Respect -output even if compiling module script

build-tools/core/src/org/jetbrains/jet/buildtools/core/BytecodeCompiler.java

@@ -90,6 +90,6 @@ public class BytecodeCompiler {
      * @param classpath      compilation classpath, can be <code>null</code> or empty
      */
     public void moduleToJar ( String module, String jar, boolean includeRuntime, String stdlib, String[] classpath ) {
-        env( stdlib, classpath ).compileModuleScript( module, jar, includeRuntime );
+        env( stdlib, classpath ).compileModuleScript( module, jar, null, includeRuntime );
     }
 }

compiler/cli/src/org/jetbrains/jet/cli/KotlinCompiler.java

@@ -100,7 +100,7 @@ public class KotlinCompiler {
         }
 
         if (arguments.module != null) {
-            environment.compileModuleScript(arguments.module, arguments.jar, arguments.includeRuntime);
+            environment.compileModuleScript(arguments.module, arguments.jar, arguments.outputDir, arguments.includeRuntime);
             return 0;
         }
         else {

compiler/cli/src/org/jetbrains/jet/compiler/CompileEnvironment.java

@@ -130,7 +130,7 @@ public class CompileEnvironment {
         return null;
     }
 
-    public void compileModuleScript(String moduleFile, String jarPath, boolean jarRuntime) {
+    public void compileModuleScript(String moduleFile, @Nullable String jarPath, @Nullable String outputDir, boolean jarRuntime) {
         final List<Module> modules = loadModuleScript(moduleFile);
 
         if (modules == null) {
@@ -144,11 +144,16 @@ public class CompileEnvironment {
         final String directory = new File(moduleFile).getParent();
         for (Module moduleBuilder : modules) {
             ClassFileFactory moduleFactory = compileModule(moduleBuilder, directory);
-            final String path = jarPath != null ? jarPath : new File(directory, moduleBuilder.getModuleName() + ".jar").getPath();
-            try {
-                writeToJar(moduleFactory, new FileOutputStream(path), null, jarRuntime);
-            } catch (FileNotFoundException e) {
-                throw new CompileEnvironmentException("Invalid jar path " + path, e);
+            if (outputDir != null) {
+                writeToOutputDirectory(moduleFactory, outputDir);
+            }
+            else {
+                String path = jarPath != null ? jarPath : new File(directory, moduleBuilder.getModuleName() + ".jar").getPath();
+                try {
+                    writeToJar(moduleFactory, new FileOutputStream(path), null, jarRuntime);
+                } catch (FileNotFoundException e) {
+                    throw new CompileEnvironmentException("Invalid jar path " + path, e);
+                }
             }
         }
     }