K2/Native: fix ModuleDescriptor dependencies in fir2ir phase

Previous implementation set Nth ModuleDescriptor dependencies to the
first N modules. This is not always correct: for example, when producing
a metadata klib (-Xmetadata-klib) for HMPP, metadata dependencies might
have inexact or missing depends= in their manifests.

This commit sets ModuleDescriptor dependencies to all other
deserialized modules. The same approach is used for K1. That way, the
implementation is more reliable.

^KT-56071

kotlin-native/backend.native/compiler/ir/backend.native/src/org/jetbrains/kotlin/backend/konan/Fir2Ir.kt

@@ -61,7 +61,6 @@ internal fun PhaseContext.fir2Ir(
                 lookupTracker = LookupTracker.DO_NOTHING
         )
         dependencies += moduleDescriptor
-        moduleDescriptor.setDependencies(ArrayList(dependencies))
 
         val isBuiltIns = moduleDescriptor.isNativeStdlib()
         if (isBuiltIns) builtInsModule = moduleDescriptor.builtIns
@@ -69,6 +68,11 @@ internal fun PhaseContext.fir2Ir(
         moduleDescriptor
     }
 
+    librariesDescriptors.forEach { moduleDescriptor ->
+        // Yes, just to all of them.
+        moduleDescriptor.setDependencies(ArrayList(dependencies))
+    }
+
     val fir2irResult = Fir2IrConverter.createModuleFragmentWithSignaturesIfNeeded(
             input.session, input.scopeSession, input.firFiles + commonFirFiles,
             configuration.languageVersionSettings, signaturer,