Tune module graph dependencies building

compiler/cli/src/org/jetbrains/kotlin/cli/jvm/modules/JavaModuleGraph.kt

@@ -47,9 +47,14 @@ class JavaModuleGraph(finder: JavaModuleFinder) {
                     // Do nothing; all automatic modules should be added to compilation roots at call site as per java.lang.module javadoc
                 }
                 is JavaModule.Explicit -> {
-                    for ((dependencyModuleName) in module.moduleInfo.requires) {
-                        if (visited.add(dependencyModuleName)) {
-                            dfs(dependencyModuleName)
+                    if (module.isJdkModule) {
+                        //ct.sym can miss some internal modules from non-transitive dependencies
+                        dfs(moduleName)
+                    } else {
+                        for ((dependencyModuleName) in module.moduleInfo.requires) {
+                            if (visited.add(dependencyModuleName)) {
+                                dfs(dependencyModuleName)
+                            }
                         }
                     }
                 }

compiler/frontend.java/src/org/jetbrains/kotlin/resolve/jvm/modules/JavaModule.kt

@@ -83,7 +83,8 @@ interface JavaModule {
     class Explicit(
             val moduleInfo: JavaModuleInfo,
             override val moduleRoots: List<Root>,
-            override val moduleInfoFile: VirtualFile
+            override val moduleInfoFile: VirtualFile,
+            val isJdkModule: Boolean = false
     ) : JavaModule {
         override val name: String
             get() = moduleInfo.moduleName