Cleanup RC deprecations in compiler and plugin.

Original commit: 744a7a83f7

jps/jps-plugin/src/org/jetbrains/kotlin/jps/build/KotlinBuilder.kt

@@ -830,7 +830,7 @@ private fun withSubtypes(
         typeFqName: FqName,
         caches: Sequence<IncrementalCacheImpl<*>>
 ): Set<FqName> {
-    val types = linkedListOf(typeFqName)
+    val types = LinkedList(listOf(typeFqName))
     val subtypes = hashSetOf<FqName>()
 
     while (types.isNotEmpty()) {

jps/jps-plugin/src/org/jetbrains/kotlin/jps/incremental/JpsIncrementalCacheImpl.kt

@@ -81,7 +81,7 @@ class JpsIncrementalCacheImpl(
 
     private inner class DirtyInlineFunctionsMap(storageFile: File) : BasicStringMap<Collection<String>>(storageFile, StringCollectionExternalizer) {
         fun getEntries(): Map<JvmClassName, Collection<String>> =
-                storage.keys.toMapBy(JvmClassName::byInternalName) { storage[it]!! }
+                storage.keys.associateBy(JvmClassName::byInternalName) { storage[it]!! }
 
         fun put(className: JvmClassName, changedFunctions: List<String>) {
             storage[className.internalName] = changedFunctions

jps/jps-plugin/test/org/jetbrains/kotlin/jps/build/AbstractLookupTrackerTest.kt

@@ -53,7 +53,7 @@ abstract class AbstractLookupTrackerTest : AbstractIncrementalJpsTest(
                 fail("File $actualFile unexpectedly contains multiline comments. In range ${matchResult.range} found: ${matchResult.value} in $text")
             }
 
-            val lines = text.lines().toArrayList()
+            val lines = text.lines().toMutableList()
 
             for ((line, lookupsFromLine) in lookupsFromFile.groupBy { it.position.line }) {
                 val columnToLookups = lookupsFromLine.groupBy { it.position.column }.toList().sortedBy { it.first }

jps/jps-plugin/test/org/jetbrains/kotlin/jps/build/classFilesComparison/classFilesComparison.kt

@@ -36,6 +36,8 @@ import java.io.File
 import java.io.PrintWriter
 import java.io.StringWriter
 import java.util.*
+import kotlin.comparisons.*
+
 
 // Set this to true if you want to dump all bytecode (test will fail in this case)
 val DUMP_ALL = System.getProperty("comparison.dump.all") == "true"
@@ -53,7 +55,7 @@ fun getDirectoryString(dir: File, interestingPaths: List<String>): String {
         val listFiles = dir.listFiles()
         assertNotNull(listFiles)
 
-        val children = listFiles!!.sortedWith(compareBy ({ it.isDirectory }, { it.name } ))
+        val children = listFiles!!.sortedWith(compareBy({ it.isDirectory }, { it.name }))
         for (child in children) {
             if (child.isDirectory) {
                 p.println(child.name)

jps/jps-plugin/test/org/jetbrains/kotlin/jps/incremental/AbstractProtoComparisonTest.kt

@@ -37,8 +37,8 @@ abstract class AbstractProtoComparisonTest : UsefulTestCase() {
         val oldClassFiles = compileFileAndGetClasses(testDataPath, testDir, "old")
         val newClassFiles = compileFileAndGetClasses(testDataPath, testDir, "new")
 
-        val oldClassMap = oldClassFiles.toMapBy { it.name }
-        val newClassMap = newClassFiles.toMapBy { it.name }
+        val oldClassMap = oldClassFiles.associateBy { it.name }
+        val newClassMap = newClassFiles.associateBy { it.name }
 
         val sb = StringBuilder()
         val p = Printer(sb)