Rework Tune module graph dependencies building

#KT-50701 In progress

compiler/cli/src/org/jetbrains/kotlin/cli/jvm/modules/CliJavaModuleFinder.kt

@@ -127,7 +127,7 @@ class CliJavaModuleFinder(
                     useSig -> createModuleFromSignature(moduleInfo)
                     else -> error("Can't find ${moduleRoot.path} module")
                 },
-                file, true
+                file, !useLastJdkApi && useSig
             )
         }
 

compiler/cli/src/org/jetbrains/kotlin/cli/jvm/modules/JavaModuleGraph.kt

@@ -30,14 +30,15 @@ class JavaModuleGraph(finder: JavaModuleFinder) {
         // Every module implicitly depends on java.base
         visited += "java.base"
 
-        fun dfs(moduleName: String) {
+        fun dfs(moduleName: String): Boolean {
             // Automatic modules have no transitive exports, so we only consider explicit modules here
-            val moduleInfo = (module(moduleName) as? JavaModule.Explicit)?.moduleInfo ?: return
+            val moduleInfo = (module(moduleName) as? JavaModule.Explicit)?.moduleInfo ?: return false
             for ((dependencyModuleName, isTransitive) in moduleInfo.requires) {
                 if (isTransitive && visited.add(dependencyModuleName)) {
                     dfs(dependencyModuleName)
                 }
             }
+            return true
         }
 
         for (moduleName in moduleNames) {
@@ -47,14 +48,11 @@ class JavaModuleGraph(finder: JavaModuleFinder) {
                     // Do nothing; all automatic modules should be added to compilation roots at call site as per java.lang.module javadoc
                 }
                 is JavaModule.Explicit -> {
-                    if (module.isJdkModule) {
-                        //ct.sym can miss some internal modules from non-transitive dependencies
-                        dfs(moduleName)
-                    } else {
-                        for ((dependencyModuleName) in module.moduleInfo.requires) {
-                            if (visited.add(dependencyModuleName)) {
-                                dfs(dependencyModuleName)
-                            }
+                    for ((dependencyModuleName, isTransitive) in module.moduleInfo.requires) {
+                        if (visited.add(dependencyModuleName)) {
+                            val moduleExists = dfs(dependencyModuleName)
+                            //ct.sym can miss some internal modules from non-transitive dependencies
+                            if (!moduleExists && !isTransitive && module.isJdkModuleFromCtSym) visited.remove(dependencyModuleName)
                         }
                     }
                 }

compiler/frontend.java/src/org/jetbrains/kotlin/resolve/jvm/modules/JavaModule.kt

@@ -81,10 +81,10 @@ interface JavaModule {
     }
 
     class Explicit(
-            val moduleInfo: JavaModuleInfo,
-            override val moduleRoots: List<Root>,
-            override val moduleInfoFile: VirtualFile,
-            val isJdkModule: Boolean = false
+        val moduleInfo: JavaModuleInfo,
+        override val moduleRoots: List<Root>,
+        override val moduleInfoFile: VirtualFile,
+        val isJdkModuleFromCtSym: Boolean = false
     ) : JavaModule {
         override val name: String
             get() = moduleInfo.moduleName

compiler/testData/javaModules/automaticModuleInternalJdkPackageUsage/jvmStatUsage.txt

@@ -0,0 +1,4 @@
+compiler/testData/javaModules/automaticModuleInternalJdkPackageUsage/jvmStatUsage/Test.kt:1:28: error: symbol is declared in module 'jdk.internal.jvmstat' which does not export package 'sun.jvmstat.monitor'
+val z: sun.jvmstat.monitor.Monitor? = null
+                           ^
+COMPILATION_ERROR

compiler/testData/javaModules/automaticModuleInternalJdkPackageUsage/jvmStatUsage/Test.kt

@@ -0,0 +1 @@
+val z: sun.jvmstat.monitor.Monitor? = null

compiler/tests/org/jetbrains/kotlin/jvm/compiler/JavaModulesIntegrationTest.kt

@@ -160,6 +160,10 @@ abstract class JavaModulesIntegrationTest(private val jdkVersion: Int, private v
         }
     }
 
+    fun testAutomaticModuleInternalJdkPackageUsage() {
+        module("jvmStatUsage")
+    }
+
     fun testReleaseFlag() {
         module("module")
         module("module9", additionalKotlinArguments = listOf("-Xjdk-release=9"))