CLion: Patch some xml's of Java plugin to make it work more stable

To get rid of exceptions while startup and indexing

prepare/clion-plugin/build.gradle.kts

@@ -1,6 +1,6 @@
-import com.github.jengelman.gradle.plugins.shadow.tasks.ShadowJar
 import com.github.jk1.tcdeps.KotlinScriptDslAdapter.teamcityServer
 import com.github.jk1.tcdeps.KotlinScriptDslAdapter.tc
+import java.util.regex.Pattern
 
 apply {
     plugin("kotlin")
@@ -29,6 +29,9 @@ val cidrPlugin by configurations.creating
 val platformDepsZip by configurations.creating
 
 val pluginXmlPath = "META-INF/plugin.xml"
+val javaPsiXmlPath = "META-INF/JavaPsiPlugin.xml"
+val javaPluginXmlPath = "META-INF/JavaPlugin.xml"
+
 val platformDepsJarName = "kotlinNative-platformDeps.jar"
 val pluginXmlLocation = File(buildDir, "pluginXml")
 
@@ -93,11 +96,46 @@ val jar = runtimeJar {
     from(pluginXmlLocation) { include(pluginXmlPath) }
 }
 
+fun Zip.includePatched(fileToMarkers: Map<String, List<String>>) {
+
+    val notDone = mutableSetOf<Pair<String, String>>()
+    fileToMarkers.forEach { (path, markers) ->
+        for (marker in markers) {
+            notDone += path to marker
+        }
+    }
+
+    eachFile {
+        val markers = fileToMarkers[this.sourcePath] ?: return@eachFile
+        this.filter {
+            var data = it
+            for (marker in markers) {
+                val newData = data.replace(("^(.*" + Pattern.quote(marker) + ".*)$").toRegex(), "<!-- $1 -->")
+                data = newData
+                notDone -= path to marker
+            }
+            data
+        }
+    }
+    doLast {
+        check(notDone.size == 0) {
+            "Filtering failed for: " +
+                    notDone.joinToString(separator = "\n") { (file, marker) -> "file=$file, marker=`$marker`" }
+        }
+    }
+}
+
 val platformDepsJar by task<Zip> {
     archiveName = platformDepsJarName
     val platformDepsJar = zipTree(platformDepsZip.singleFile).matching { include("**/$platformDepsJarName") }.singleFile
     from(zipTree(platformDepsJar)) {
         exclude(pluginXmlPath)
+        includePatched(
+            mapOf(
+                javaPsiXmlPath to listOf("implementation=\"org.jetbrains.uast.java.JavaUastLanguagePlugin\""),
+                javaPluginXmlPath to listOf("implementation=\"com.intellij.spi.SPIFileTypeFactory\"")
+            )
+        )
     }
 }