Fix various tests and test data

Since we now distinguish between binaries and java source roots

compiler/testData/cli/jvm/wrongKotlinSignature.args

@@ -1,5 +1,4 @@
 $TESTDATA_DIR$/wrongKotlinSignature.kt
--cp
 $TESTDATA_DIR$/wrongKotlinSignatureLib
 -d
 $TEMP_DIR$

compiler/tests/org/jetbrains/kotlin/codegen/generated/AbstractBlackBoxCodegenTest.java

@@ -42,6 +42,7 @@ import java.util.ArrayList;
 import java.util.Collections;
 import java.util.List;
 
+import static org.jetbrains.kotlin.cli.jvm.config.ConfigPackage.addJavaSourceRoot;
 import static org.jetbrains.kotlin.cli.jvm.config.ConfigPackage.addJvmClasspathRoot;
 import static org.jetbrains.kotlin.codegen.CodegenTestUtil.compileJava;
 import static org.jetbrains.kotlin.load.kotlin.PackageClassUtils.getPackageClassFqName;
@@ -144,7 +145,7 @@ public abstract class AbstractBlackBoxCodegenTest extends CodegenTestCase {
         CompilerConfiguration configuration = JetTestUtils.compilerConfigurationForTests(
                 ConfigurationKind.ALL, TestJdkKind.MOCK_JDK, JetTestUtils.getAnnotationsJar()
         );
-        addJvmClasspathRoot(configuration, dirFile);
+        addJavaSourceRoot(configuration, dirFile);
         myEnvironment = KotlinCoreEnvironment.createForTests(getTestRootDisposable(), configuration, EnvironmentConfigFiles.JVM_CONFIG_FILES);
         loadFiles(ArrayUtil.toStringArray(ktFilePaths));
         classFileFactory =

compiler/tests/org/jetbrains/kotlin/jvm/compiler/AbstractLoadJavaTest.java

@@ -111,7 +111,7 @@ public abstract class AbstractLoadJavaTest extends TestCaseWithTmpdir {
         Assert.assertEquals("test", packageFromSource.getName().asString());
 
         PackageViewDescriptor packageFromBinary = LoadDescriptorUtil.loadTestPackageAndBindingContextFromJavaRoot(
-                tmpdir, getTestRootDisposable(), TestJdkKind.MOCK_JDK, configurationKind
+                tmpdir, getTestRootDisposable(), TestJdkKind.MOCK_JDK, configurationKind, true
         ).first;
 
         for (DeclarationDescriptor descriptor : packageFromBinary.getMemberScope().getAllDescriptors()) {
@@ -140,10 +140,11 @@ public abstract class AbstractLoadJavaTest extends TestCaseWithTmpdir {
         });
 
         CompilerConfiguration configuration = JetTestUtils.compilerConfigurationForTests(
-                ConfigurationKind.JDK_ONLY, TestJdkKind.MOCK_JDK, tmpdir);
+                ConfigurationKind.JDK_ONLY, TestJdkKind.MOCK_JDK);
         addKotlinSourceRoot(configuration, sourcesDir.getAbsolutePath());
         addJavaSourceRoot(configuration, new File("compiler/testData/loadJava/include"));
-
+        addJavaSourceRoot(configuration, tmpdir);
+        
         KotlinCoreEnvironment environment =
                 KotlinCoreEnvironment.createForTests(getTestRootDisposable(), configuration, EnvironmentConfigFiles.JVM_CONFIG_FILES);
 
@@ -211,7 +212,7 @@ public abstract class AbstractLoadJavaTest extends TestCaseWithTmpdir {
         FileUtil.copy(originalJavaFile, new File(testPackageDir, originalJavaFile.getName()));
 
         Pair<PackageViewDescriptor, BindingContext> javaPackageAndContext = loadTestPackageAndBindingContextFromJavaRoot(
-                tmpdir, getTestRootDisposable(), TestJdkKind.MOCK_JDK, ConfigurationKind.JDK_ONLY
+                tmpdir, getTestRootDisposable(), TestJdkKind.MOCK_JDK, ConfigurationKind.JDK_ONLY, false
         );
 
         checkJavaPackage(expectedFile, javaPackageAndContext.first, javaPackageAndContext.second,
@@ -258,7 +259,7 @@ public abstract class AbstractLoadJavaTest extends TestCaseWithTmpdir {
             @NotNull ConfigurationKind configurationKind
     ) throws IOException {
         compileJavaWithAnnotationsJar(javaFiles, outDir);
-        return loadTestPackageAndBindingContextFromJavaRoot(outDir, myTestRootDisposable, TestJdkKind.MOCK_JDK, configurationKind);
+        return loadTestPackageAndBindingContextFromJavaRoot(outDir, myTestRootDisposable, TestJdkKind.MOCK_JDK, configurationKind, true);
     }
 
     private static void checkJavaPackage(

compiler/tests/org/jetbrains/kotlin/jvm/compiler/LoadDescriptorUtil.java

@@ -46,10 +46,7 @@ import org.jetbrains.kotlin.test.TestJdkKind;
 
 import java.io.File;
 import java.io.IOException;
-import java.util.Arrays;
-import java.util.Collection;
-import java.util.Collections;
-import java.util.List;
+import java.util.*;
 
 import static org.jetbrains.kotlin.test.JetTestUtils.createEnvironmentWithMockJdkAndIdeaAnnotations;
 
@@ -81,14 +78,25 @@ public final class LoadDescriptorUtil {
             @NotNull File javaRoot,
             @NotNull Disposable disposable,
             @NotNull TestJdkKind testJdkKind,
-            @NotNull ConfigurationKind configurationKind
+            @NotNull ConfigurationKind configurationKind,
+            boolean isBinaryRoot
     ) {
+        List<File> javaBinaryRoots = new ArrayList<File>();
+        javaBinaryRoots.add(JetTestUtils.getAnnotationsJar());
+
+        List<File> javaSourceRoots = new ArrayList<File>();
+        javaSourceRoots.add(new File("compiler/testData/loadJava/include"));
+        if (isBinaryRoot) {
+            javaBinaryRoots.add(javaRoot);
+        }
+        else {
+            javaSourceRoots.add(javaRoot);
+        }
         CompilerConfiguration configuration = JetTestUtils.compilerConfigurationForTests(
                 configurationKind,
                 testJdkKind,
-                JetTestUtils.getAnnotationsJar(),
-                javaRoot,
-                new File("compiler/testData/loadJava/include")
+                javaBinaryRoots,
+                javaSourceRoots
         );
         KotlinCoreEnvironment environment =
                 KotlinCoreEnvironment.createForTests(disposable, configuration, EnvironmentConfigFiles.JVM_CONFIG_FILES);

compiler/tests/org/jetbrains/kotlin/jvm/runtime/AbstractJvmRuntimeDescriptorLoaderTest.kt

@@ -90,7 +90,7 @@ public abstract class AbstractJvmRuntimeDescriptorLoaderTest : TestCaseWithTmpdi
         val actual = createReflectedPackageView(classLoader)
 
         val expected = LoadDescriptorUtil.loadTestPackageAndBindingContextFromJavaRoot(
-                tmpdir, getTestRootDisposable(), jdkKind, ConfigurationKind.ALL
+                tmpdir, getTestRootDisposable(), jdkKind, ConfigurationKind.ALL, true
         ).first
 
         val comparatorConfiguration = Configuration(

idea/testData/modules.xml/basic.xml

@@ -4,7 +4,7 @@
         <sources path="s1"/>
         <sources path="s2"/>
         <!-- Java source roots -->
-        <classpath path="java"/>
+        <javaSourceRoots path="java"/>
         <!-- Classpath -->
         <classpath path="cp1"/>
         <classpath path="cp2"/>

idea/testData/modules.xml/filtered.xml

@@ -3,6 +3,7 @@
     <module name="name" outputDir="output">
         <sources path="s1"/>
         <sources path="s2"/>
+        <!-- Java source roots -->
         <!-- Classpath -->
         <!-- Output directory, commented out -->
         <!-- 

idea/testData/modules.xml/multiple.xml

@@ -3,6 +3,7 @@
     <module name="name" outputDir="output">
         <sources path="s1"/>
         <sources path="s2"/>
+        <!-- Java source roots -->
         <!-- Classpath -->
         <!-- Output directory, commented out -->
         <!-- 
@@ -17,6 +18,7 @@
     <module name="name2" outputDir="output2">
         <sources path="s12"/>
         <sources path="s22"/>
+        <!-- Java source roots -->
         <!-- Classpath -->
         <!-- Output directory, commented out -->
         <!--