Bump commons-io from 2.4 to 2.7 in /richedit

Bumps commons-io from 2.4 to 2.7.

Signed-off-by: dependabot[bot] <support@github.com>

README.md

@@ -126,7 +126,27 @@ A log file (app.log) is created after every execution of the [fixminer.sh]((pyth
    
    8. __stats__: Calculate frequency statistics of the patterns under statsactions.csv in datapath. The information is also written in app.log file.
    
-   7. __patterns__ : Export FixPatterns of APR integration under patterns folder located in datapath/
+   9. __patterns__ : Export FixPatterns of APR integration under patterns folder located in datapath/
+
+
+##### Structure of the cluster folders
+```powershell
+  |--- actions                    : Action clusters
+  |------ReturnStatement          : AST Node type
+  |---------4                     : The size of the rich edit script
+  |------------0                  : 0th Action cluster of ReturnStatement of rich edit size 4
+  |--------------- filename       : 0th member of the cluster
+
+
+  |--- tokens                     : Token clusters
+  |------ReturnStatement          : AST Node type
+  |---------4                     : The size of the rich edit script
+  |------------0                  : 0th Action cluster of ReturnStatement of rich edit size 4
+  |---------------0               : 0th Token cluster of ReturnStatement of rich edit size 4 of 0th action cluster
+  |----------------- filename       : 0th member of the cluster
+
+
+```
                                                                                                                    
    <!--
     

gumtree/gen.srcml/src/main/java/com/github/gumtreediff/gen/srcml/AbstractSrcmlTreeGenerator.java

@@ -177,7 +177,6 @@ public abstract class AbstractSrcmlTreeGenerator extends TreeGenerator {
     private void fixPos(TreeContext ctx) {
         for (ITree t : ctx.getRoot().postOrder()) {
             if (!t.isLeaf()) {
-                if(t.getType() == 0) continue;
                 //put the keywords as labels
 //                if(t.getType() == 34 || t.getType() ==37 || t.getType() ==38 || t.getType()==39 || t.getType() == 41 || t.getType()==45 || t.getType() ==55 || t.getType()==14){
 //                    t.setLabel(NodeMap_new.map.get(t.getType())+" "  +t.getLabel());

gumtree/gen.srcml/src/main/java/com/github/gumtreediff/gen/srcml/NodeMap_new.java

@@ -200,7 +200,6 @@ public class NodeMap_new {
             map.put(    197 , "message");
             map.put(    199 , "protocol_list");
             map.put(    200 , "category");
-            map.put(    201 , "clause");
 
 //
 //            map.put(1	,	"unit");

python/abstractPatch.py

@@ -52,18 +52,20 @@ delPattern = 'DEL (' + '|'.join(ast) + ')@@(.*)@AT@'
 insPattern = 'INS (' + '|'.join(ast) + ')@@(.*)@TO@ (' + '|'.join(ast) + ')@@(.*)@AT@'
 updPattern = 'UPD (' + '|'.join(ast) + ')@@(.*)@TO@(.*)@AT@'
 
-def loadPairMulti(root,matches,level):
+def loadPairMulti(root,clusterPath,level):
 
     # root = 'BreakStatement'
     logging.info(root)
-
+    port = REDIS_PORT
     # if isfile(clusterPath +"/"+root+".pickle"):
     #     return load_zipped_pickle(clusterPath +"/"+root+".pickle")
     # else:
         # redis_db = redis.StrictRedis(host="localhost", port=port, db=1)  #L1
-
-
-    matches = matches[matches.pairs_key.apply(lambda x: x.startswith(root + '-'))]
+    if level == 'tokens':
+        redis_db = redis.StrictRedis(host="localhost", port=port, db=3)
+    else:
+        redis_db = redis.StrictRedis(host="localhost", port=port, db=2)
+    keys = redis_db.scan(0, match=root+'-*', count='100000000')
     # keys = redis_db.hkeys("dump")
 
     # tuples = []
@@ -73,7 +75,8 @@ def loadPairMulti(root,matches,level):
 
     # coreNumber = 1600
     # print('Core number %s' % coreNumber)
-
+    matches = pd.DataFrame(keys[1],columns=['pairs_key'])
+    matches['pairs_key']=matches['pairs_key'].apply(lambda x:x.decode())
     # matches['pairs']=matches['pairs_key'].apply(lambda x:x.split('_')[1:])
     matches['pairs']=matches['pairs_key'].apply(lambda x:x.split(root)[1].split('/')[1:])
     matches['tuples'] = matches.pairs.apply(lambda x: tuple(x))
@@ -84,7 +87,7 @@ def loadPairMulti(root,matches,level):
     # matches['sizes']=matches['pairs_key'].apply(lambda x:x.split('_')[0].split('-')[1])
     matches['sizes']=matches['pairs_key'].apply(lambda x:x.split(root)[1].split('/')[0].split('-')[1])
     if level == 'tokens':
-        matches['tokens']=matches['pairs_key'].apply(lambda x:x.split('/')[0].split('-')[2])
+        matches['actions']=matches['pairs_key'].apply(lambda x:x.split('/')[0].split('-')[2])
     # if level == 'tokens':
     #     matches['actions'] = matches['pairs_key'].apply(lambda x: x.split('/')[0].split('-')[2])
     #     matches['tokens']=matches['pairs_key'].apply(lambda x:x.split('/')[0].split('-')[3])
@@ -105,21 +108,6 @@ def getMapping(pathMapping,x):
 
 
 
-def decode_redis(src):
-    if isinstance(src, list):
-        rv = list()
-        for key in src:
-            rv.append(decode_redis(key))
-        return rv
-    elif isinstance(src, dict):
-        rv = dict()
-        for key in src:
-            rv[key.decode()] = decode_redis(src[key])
-        return rv
-    elif isinstance(src, bytes):
-        return src.decode()
-    else:
-        raise Exception("type not handled: " +type(src))
 
 def cluster(clusterPath,pairsPath, level):
 
@@ -128,34 +116,18 @@ def cluster(clusterPath,pairsPath, level):
             os.makedirs(clusterPath, exist_ok=True)
             roots = listdir(pairsPath)
             roots = [i for i in roots if not i.startswith('.')]
-
-            port = REDIS_PORT
-            redis_db = redis.StrictRedis(host="localhost", port=port, db=1)
-            filenames= decode_redis(redis_db.hgetall('filenames'))
-            pairsPath = filenames
-            roots = list(set([i.split('-')[0] for i in filenames.keys()]))
-            if level == 'tokens':
-                redis_db = redis.StrictRedis(host="localhost", port=port, db=3)
-            else:
-                redis_db = redis.StrictRedis(host="localhost", port=port, db=2)
-
-
-
-            keys = redis_db.hkeys("compared")
-            compared = pd.DataFrame(keys, columns=['pairs_key'])
-            compared['pairs_key'] = compared['pairs_key'].apply(lambda x: x.decode())
             # roots = [rootType]
             # parallelRun(loadPairMulti,roots,clusterPath)
             for root in roots:
-                matches = loadPairMulti(root,compared,level)
+                matches = loadPairMulti(root,clusterPath,level)
                 sizes = matches['sizes'].unique().tolist()
                 for s in sizes:
                     match = matches[matches['sizes'] == s]
 
                     if level == 'tokens':
-                        actions = match['tokens'].unique().tolist()
+                        actions = match['actions'].unique().tolist()
                         for action in actions:
-                            match = match[match['tokens'] == action]
+                            match = match[match['actions'] == action]
                             clusterCore(clusterPath,  level, match, pairsPath, root, s,action)
                     # elif level == 'tokens':
                     #     actions = match['actions'].unique().tolist()
@@ -190,24 +162,21 @@ def clusterCore(clusterPath, level, match, pairsPath, root, s,action ,token=''):
         logging.info('Cluster size %d',len(subgraph.nodes()))
         cluster.append(subgraph.nodes())
     cluster
-    # pathMapping = dict()
-    # if level == 'tokens':
-    #     indexFile = join(pairsPath, root, s,action+'.index')
-    # elif level == 'actions':
-    #     indexFile = join(pairsPath, root, s + '.index')
-    # # else:
-    # #     indexFile =join(pairsPath, root, s,action,token+'.index')
-    # df = pd.read_csv(indexFile, header=None, usecols=[0, 1], index_col=[0])
-    # pathMapping = df.to_dict()
+    pathMapping = dict()
+    if level == 'tokens':
+        indexFile = join(pairsPath, root, s,action+'.index')
+    elif level == 'actions':
+        indexFile = join(pairsPath, root, s + '.index')
+    # else:
+    #     indexFile =join(pairsPath, root, s,action,token+'.index')
+    df = pd.read_csv(indexFile, header=None, usecols=[0, 1], index_col=[0])
+    pathMapping = df.to_dict()
 
     workList = []
     for idx, clus in enumerate(cluster):
         logging.info('exporting cluster %s %s %s %d', root,s,action,idx)
         for f in clus:
-            # redis_db = redis.StrictRedis(host="localhost", port=6399, db=1)
-            # dumpFile = redis_db.hget("filenames",root+'-'+s+'-'+f)
-            dumpFile = pairsPath[root+'-'+s+'-'+f]
-            # dumpFile = pathMapping[1][int(f)]
+            dumpFile = pathMapping[1][int(f)]
 
             t = dumpFile,root,level,clusterPath,s,action,token,idx
             workList.append(t)
@@ -215,40 +184,33 @@ def clusterCore(clusterPath, level, match, pairsPath, root, s,action ,token=''):
     parallelRun(dumpFilesCore,workList)
     # for wl in workList:
     #     dumpFilesCore(wl)
-    # dumpFilesCore(('linux_4844f5_c5f13d_sound#pci#hda#patch_ca0132.c.txt_0', 'decl_stmt', 'actions', '/Users/anilkoyuncu/projects/fixminer-data/actions', '14', '', '', 19))
+    # dumpFilesCore(('hive_d65d5c_96c1dc_ql#src#gen#protobuf#gen-java#org#apache#hadoop#hive#ql#io#orc#OrcProto.txt_31', 'ReturnStatement', 'tokens', '/Users/anil.koyuncu/projects/richedit-all/enhancedASTDiff/python/data/tokens', '3', '1', '0', 10))
 
 
 def dumpFilesCore(t):
 
     try:
         dumpFile, root, level, clusterPath, s, action, token, idx = t
-        project, _ ,fileName = re.split('_[0-9a-f]{6,40}', dumpFile,maxsplit=2)
-        prev, rev = re.findall('_[0-9a-f]{6,40}', dumpFile)[:2]
-
-        prev = prev.replace('_','')
-        rev = rev.replace('_','')
-        fileName, hunk = fileName.split('.txt_')
-        # split = dumpFile.split('_')
-        # project = split[0]
-        # filename = "_".join(split[1:-1])
-        filename = prev + '_'+ rev + fileName + '.txt'
+        split = dumpFile.split('_')
+        project = split[0]
+        filename = "_".join(split[1:-1])
         filePath = join(DATASET, project, 'DiffEntries', filename)
 
         key = root + '/'+s+'/'+dumpFile
         jdk8 = os.environ["JDK8"]
         # cmd = "JAVA_HOME='"+jdk8+"' java -jar "+ join(DATA_PATH,'FixPatternMiner-1.0.1.jar') + " " + join(DATA_PATH,'app.properties')+" PATTERN " +key
 
-        clusterSavePath = join(clusterPath, root, s, str(idx))
+        if level == 'tokens':
+            clusterSavePath = join(clusterPath, root, s, action, str(idx))
+        else:
+            clusterSavePath = join(clusterPath, root, s, str(idx))
         os.makedirs(clusterSavePath, exist_ok=True)
         shutil.copy(filePath,join(clusterSavePath,dumpFile))
         # with open(join(clusterSavePath, dumpFile), 'w', encoding='utf-8') as writeFile:
         #     writeFile.write(lines)
 
-        # with open(join(clusterSavePath,dumpFile),'r') as readFile:
-        #     fileContent = readFile.read()
-        #
-        # with open(join(clusterSavePath,dumpFile + "_" + hunk),'w') as writeFile:
-        #     writeFile.write(re.split(r"@@\s\-\d+,*\d*\s\+\d+,*\d*\s@@", fileContent)[int(hunk)+1])
+
+
         clusterSavePath = ''
         # if level == 'shapes':
         #     clusterSavePath = join(clusterPath, root,s, str(idx))

python/common/commons.py

@@ -276,7 +276,7 @@ def shellGitCheckout(cmd,timeout =600,enc='utf-8'):
             logging.warning(cmd +'\t'+str(t))
     return output,errors
 
-def callSpinfer(cmd,timeout =900,enc='utf-8'):
+def callSpinfer(cmd,timeout =600,enc='utf-8'):
     output = ''
     errors = ''
     # logging.debug(cmd)
@@ -569,7 +569,7 @@ def unique_everseen(iterable, key=None):
                 seen_add(k)
                 yield element
 
-def plotBox(yList,labels, fn, xAxisLabel,yAxisLabel, rotate=False,limit=True):
+def plotBox(yList,labels, fn, rotate=False,limit=True):
     import matplotlib
     matplotlib.use("TkAgg")
     import matplotlib.pyplot as plt
@@ -583,7 +583,7 @@ def plotBox(yList,labels, fn, xAxisLabel,yAxisLabel, rotate=False,limit=True):
 
     flierprops = dict(markeredgecolor ='black',markerfacecolor=
                            'black',marker='.',markersize=2)
-    box = ax1.boxplot(yList, 0, flierprops=flierprops,widths=0.5, showmeans=True, vert=False,meanprops=meanpointsprops)
+    box = ax1.boxplot(yList, 0, flierprops=flierprops,widths=0.5, showmeans=False, vert=True,meanprops=meanpointsprops)
     for line in box['medians']:
         x,y = line.get_xydata()[1]
         line.set(linewidth=3)
@@ -598,24 +598,22 @@ def plotBox(yList,labels, fn, xAxisLabel,yAxisLabel, rotate=False,limit=True):
     else:
         # ax1.set_xticklabels(labels)
         # ax1.set_xticklabels(None)
-        ax1.set_yticklabels(labels,  ha='right')
-        ax1.get_yaxis().set_ticklabels(labels)
+        ax1.get_xaxis().set_ticklabels([])
     # sns.boxplot(yList, ax=ax1)
     if limit:
-        ax1.set_xlim(left=0)
+        ax1.set_ylim(top=1.1,bottom=0)
         ax1.yaxis.set_ticks([0.0,1.0])
     else:
-        # ax1.set_yscale('log')
-        ax1.set_xlim(left=0)
-        ax1.set_xlabel(xAxisLabel)
-        ax1.set_ylabel(yAxisLabel)
+        ax1.set_yscale('log')
+        ax1.set_xlabel('Cluster Member Size')
+        ax1.set_ylabel('Folds')
     plt.ion()
 
     plt.subplots_adjust(wspace=0, hspace=0)
     fig = plt.gcf()
 
     # fig.tight_layout()
-    fig.set_size_inches(7, 2, forward=True)
+    fig.set_size_inches(7, 1, forward=True)
     fig.savefig(fn, dpi=100, bbox_inches='tight')
 
 

python/data/datasets.csv

@@ -3,6 +3,7 @@ libtiff, https://gitlab.com/libtiff/libtiff.git
 FFmpeg, https://github.com/FFmpeg/FFmpeg.git
 cmake, https://gitlab.kitware.com/cmake/cmake.git
 redis, https://github.com/antirez/redis.git
+ompi, https://github.com/open-mpi/ompi.git
 gzip, https://git.savannah.gnu.org/git/gzip.git
 libarchive, https://github.com/libarchive/libarchive
 cairo, https://gitlab.freedesktop.org/cairo/cairo.git
@@ -18,335 +19,10 @@ php-src, https://github.com/php/php-src.git
 gtk, https://gitlab.gnome.org/GNOME/gtk.git
 gstreamer, https://gitlab.freedesktop.org/gstreamer/gstreamer.git
 openssh-portable, https://github.com/openssh/openssh-portable.git
+openssl, https://github.com/openssl/openssl.git
 wireshark, https://github.com/wireshark/wireshark.git
+git, https://github.com/git/git.git
 linux, git://git.kernel.org/pub/scm/linux/kernel/git/stable/linux.git
 gmp,https://github.com/ryepdx/gmp
 lighttpd1.4,https://github.com/lighttpd/lighttpd1.4.git
 lighttpd2,https://github.com/lighttpd/lighttpd2.git
-xqemu,https://github.com/xqemu/xqemu
-git,https://github.com/git/git
-gpdb,https://github.com/greenplum-db/gpdb
-MonetDBLite-C,https://github.com/MonetDB/MonetDBLite-C
-panda,https://github.com/panda-re/panda
-freeradius-server,https://github.com/FreeRADIUS/freeradius-server
-bind9,https://github.com/isc-projects/bind9
-kamailio,https://github.com/kamailio/kamailio
-ompi,https://github.com/open-mpi/ompi
-prrte,https://github.com/openpmix/prrte
-openssl,https://github.com/openssl/openssl
-NetworkManager,https://github.com/NetworkManager/NetworkManager
-freeciv,https://github.com/freeciv/freeciv
-pcp,https://github.com/performancecopilot/pcp
-gnutls,https://github.com/gnutls/gnutls
-afni,https://github.com/afni/afni
-fontforge,https://github.com/fontforge/fontforge
-valgrind,https://github.com/pmem/valgrind
-ImageMagick6,https://github.com/ImageMagick/ImageMagick6
-rsyslog,https://github.com/rsyslog/rsyslog
-gpac,https://github.com/gpac/gpac
-PackageKit,https://github.com/hughsie/PackageKit
-libdxf,https://github.com/bert/libdxf
-contiki,https://github.com/contiki-os/contiki
-syslog-ng,https://github.com/syslog-ng/syslog-ng
-collectd,https://github.com/collectd/collectd
-atheme,https://github.com/atheme/atheme
-open-watcom-v2,https://github.com/open-watcom/open-watcom-v2
-tvheadend,https://github.com/tvheadend/tvheadend
-eudev,https://github.com/gentoo/eudev
-SRB2,https://github.com/STJr/SRB2
-hyperion,https://github.com/SDL-Hercules-390/hyperion
-riscv-openocd,https://github.com/riscv/riscv-openocd
-lxc,https://github.com/lxc/lxc
-deadbeef,https://github.com/DeaDBeeF-Player/deadbeef
-openocd,https://github.com/ilg-archived/openocd
-tmux,https://github.com/ThomasAdam/tmux
-strace,https://github.com/strace/strace
-ack,https://github.com/davidgiven/ack
-i3,https://github.com/Airblader/i3
-zstd,https://github.com/facebook/zstd
-libyang,https://github.com/CESNET/libyang
-mps,https://github.com/Ravenbrook/mps
-acados,https://github.com/acados/acados
-i3,https://github.com/i3/i3
-hashcat,https://github.com/hashcat/hashcat
-freetds,https://github.com/FreeTDS/freetds
-SLASHEM-Extended,https://github.com/SLASHEM-Extended/SLASHEM-Extended
-xmake,https://github.com/xmake-io/xmake
-indigo,https://github.com/indigo-astronomy/indigo
-libpostal,https://github.com/openvenues/libpostal
-openwsn-fw,https://github.com/openwsn-berkeley/openwsn-fw
-skiboot,https://github.com/open-power/skiboot
-civetweb,https://github.com/civetweb/civetweb
-ga,https://github.com/GlobalArrays/ga
-harvey,https://github.com/Harvey-OS/harvey
-astrometry.net,https://github.com/dstndstn/astrometry.net
-aranym,https://github.com/aranym/aranym
-NyuziProcessor,https://github.com/jbush001/NyuziProcessor
-Netatalk,https://github.com/Netatalk/Netatalk
-libevent,https://github.com/libevent/libevent
-PnetCDF,https://github.com/Parallel-NetCDF/PnetCDF
-owfs,https://github.com/owfs/owfs
-glfw,https://github.com/glfw/glfw
-dateutils,https://github.com/hroptatyr/dateutils
-alsa-lib,https://github.com/alsa-project/alsa-lib
-notion,https://github.com/raboof/notion
-mint-arena,https://github.com/zturtleman/mint-arena
-citus,https://github.com/citusdata/citus
-simh,https://github.com/simh/simh
-file,https://github.com/file/file
-aircrack-ng,https://github.com/aircrack-ng/aircrack-ng
-nagios-plugins,https://github.com/nagios-plugins/nagios-plugins
-librdkafka,https://github.com/edenhill/librdkafka
-bitlbee,https://github.com/bitlbee/bitlbee
-cdogs-sdl,https://github.com/cxong/cdogs-sdl
-LCUI,https://github.com/lc-soft/LCUI
-minisphere,https://github.com/fatcerberus/minisphere
-monitoring-plugins,https://github.com/monitoring-plugins/monitoring-plugins
-openrc,https://github.com/OpenRC/openrc
-OpenDUNE,https://github.com/OpenDUNE/OpenDUNE
-aerospike-client-c,https://github.com/aerospike/aerospike-client-c
-libming,https://github.com/libming/libming
-kvazaar,https://github.com/ultravideo/kvazaar
-deltachat-core,https://github.com/deltachat/deltachat-core
-ettercap,https://github.com/Ettercap/ettercap
-wget2,https://github.com/rockdaboot/wget2
-geeqie,https://github.com/BestImageViewer/geeqie
-libzip,https://github.com/nih-at/libzip
-specfem2d,https://github.com/geodynamics/specfem2d
-jailhouse,https://github.com/siemens/jailhouse
-xash3d,https://github.com/FWGS/xash3d
-oniguruma,https://github.com/kkos/oniguruma
-openvpn,https://github.com/OpenVPN/openvpn
-libopencm3,https://github.com/libopencm3/libopencm3
-atari800,https://github.com/atari800/atari800
-htslib,https://github.com/samtools/htslib
-luajit2,https://github.com/openresty/luajit2
-dnscrypt-proxy,https://github.com/dyne/dnscrypt-proxy
-ccan,https://github.com/rustyrussell/ccan
-rumprun,https://github.com/rumpkernel/rumprun
-testdisk,https://github.com/cgsecurity/testdisk
-ccextractor,https://github.com/CCExtractor/ccextractor
-hackrf,https://github.com/mossmann/hackrf
-flex,https://github.com/westes/flex
-libmdbx,https://github.com/erthink/libmdbx
-PowerShell-DSC-for-Linux,https://github.com/Microsoft/PowerShell-DSC-for-Linux
-lcdproc,https://github.com/lcdproc/lcdproc
-cmus,https://github.com/cmus/cmus
-libstoragemgmt,https://github.com/libstorage/libstoragemgmt
-ish,https://github.com/ish-app/ish
-celix,https://github.com/apache/celix
-nfft,https://github.com/NFFT/nfft
-xf86-input-wacom,https://github.com/linuxwacom/xf86-input-wacom
-libcaca,https://github.com/cacalabs/libcaca
-lldpd,https://github.com/vincentbernat/lldpd
-speex,https://github.com/xiph/speex
-Icecast-Server,https://github.com/xiph/Icecast-Server
-mosquitto,https://github.com/eclipse/mosquitto
-aravis,https://github.com/AravisProject/aravis
-tcsh,https://github.com/tcsh-org/tcsh
-pysam,https://github.com/pysam-developers/pysam
-c-blosc2,https://github.com/Blosc/c-blosc2
-blis,https://github.com/flame/blis
-libiio,https://github.com/analogdevicesinc/libiio
-ngs,https://github.com/ngs-lang/ngs
-rauc,https://github.com/rauc/rauc
-minizip,https://github.com/nmoinvaz/minizip
-tlf,https://github.com/Tlf/tlf
-NumCosmo,https://github.com/NumCosmo/NumCosmo
-pilight,https://github.com/pilight/pilight
-pg_pathman,https://github.com/postgrespro/pg_pathman
-libfuse,https://github.com/libfuse/libfuse
-cgreen,https://github.com/cgreen-devs/cgreen
-hawq,https://github.com/apache/hawq
-check,https://github.com/libcheck/check
-mpifileutils,https://github.com/hpc/mpifileutils
-ck,https://github.com/concurrencykit/ck
-openpbs,https://github.com/openpbs/openpbs
-oftc-ircservices,https://github.com/oftc/oftc-ircservices
-systemshock,https://github.com/Interrupt/systemshock
-dynomite,https://github.com/Netflix/dynomite
-bahamut,https://github.com/DALnet/bahamut
-tinyproxy,https://github.com/tinyproxy/tinyproxy
-crazyflie-firmware,https://github.com/bitcraze/crazyflie-firmware
-librsync,https://github.com/librsync/librsync
-gdnsd,https://github.com/gdnsd/gdnsd
-Zenroom,https://github.com/dyne/Zenroom
-yubico-piv-tool,https://github.com/Yubico/yubico-piv-tool
-petitboot,https://github.com/open-power/petitboot
-mercury,https://github.com/mercury-hpc/mercury
-libvmi,https://github.com/libvmi/libvmi
-Criterion,https://github.com/Snaipe/Criterion
-libqb,https://github.com/ClusterLabs/libqb
-paho.mqtt.c,https://github.com/eclipse/paho.mqtt.c
-mupnp,https://github.com/cybergarage/mupnp
-raft,https://github.com/canonical/raft
-libdill,https://github.com/sustrik/libdill
-pupnp,https://github.com/pupnp/pupnp
-munge,https://github.com/dun/munge
-nginx-vod-module,https://github.com/kaltura/nginx-vod-module
-TIC-80,https://github.com/nesbox/TIC-80
-ubertooth,https://github.com/greatscottgadgets/ubertooth
-controller,https://github.com/kiibohd/controller
-tarsnap,https://github.com/Tarsnap/tarsnap
-miniJVM,https://github.com/digitalgust/miniJVM
-libmaxminddb,https://github.com/maxmind/libmaxminddb
-packetgraph,https://github.com/outscale/packetgraph
-zmap,https://github.com/zmap/zmap
-tpm2-abrmd,https://github.com/tpm2-software/tpm2-abrmd
-dps-for-iot,https://github.com/intel/dps-for-iot
-libplacebo,https://github.com/haasn/libplacebo
-parasail,https://github.com/jeffdaily/parasail
-powerman,https://github.com/chaos/powerman
-rmw,https://github.com/theimpossibleastronaut/rmw
-mpb,https://github.com/NanoComp/mpb
-mapcache,https://github.com/mapserver/mapcache
-secp256k1,https://github.com/bitcoin-core/secp256k1
-app,https://github.com/Studio-Link/app
-portable,https://github.com/libressl-portable/portable
-openbsm,https://github.com/openbsm/openbsm
-Picnic,https://github.com/IAIK/Picnic
-Unity,https://github.com/ThrowTheSwitch/Unity
-cyclonedds,https://github.com/eclipse-cyclonedds/cyclonedds
-inadyn,https://github.com/troglobit/inadyn
-input-wacom,https://github.com/linuxwacom/input-wacom
-my_basic,https://github.com/paladin-t/my_basic
-pure-ftpd,https://github.com/jedisct1/pure-ftpd
-fakechroot,https://github.com/dex4er/fakechroot
-liboqs,https://github.com/open-quantum-safe/liboqs
-libatomic_ops,https://github.com/ivmai/libatomic_ops
-netcode,https://github.com/networkprotocol/netcode
-fwup,https://github.com/fhunleth/fwup
-otfcc,https://github.com/caryll/otfcc
-mcu,https://github.com/digitalbitbox/mcu
-cglm,https://github.com/recp/cglm
-gphoto2,https://github.com/gphoto/gphoto2
-ksmbd-tools,https://github.com/namjaejeon/ksmbd-tools
-unabto,https://github.com/nabto/unabto
-SSLproxy,https://github.com/sonertari/SSLproxy
-logrotate,https://github.com/logrotate/logrotate
-trunk,https://github.com/idathena/trunk
-duc,https://github.com/zevv/duc
-parodus,https://github.com/xmidt-org/parodus
-crust,https://github.com/crust-firmware/crust
-liblognorm,https://github.com/rsyslog/liblognorm
-axel,https://github.com/axel-download-accelerator/axel
-MultiMarkdown-6,https://github.com/fletcher/MultiMarkdown-6
-dqlite,https://github.com/canonical/dqlite
-snowball,https://github.com/snowballstem/snowball
-libqrencode,https://github.com/fukuchi/libqrencode
-pesign,https://github.com/rhboot/pesign
-3CeAM,https://github.com/3CeAM/3CeAM
-vnstat,https://github.com/vergoh/vnstat
-scs,https://github.com/cvxgrp/scs
-snoopy,https://github.com/a2o/snoopy
-libtpms,https://github.com/stefanberger/libtpms
-sniproxy,https://github.com/dlundquist/sniproxy
-ngx_php7,https://github.com/rryqszq4/ngx_php7
-mod_perimeterx,https://github.com/PerimeterX/mod_perimeterx
-luvi,https://github.com/luvit/luvi
-Clight,https://github.com/FedeDP/Clight
-imv,https://github.com/eXeC64/imv
-UDUNITS-2,https://github.com/Unidata/UDUNITS-2
-redshift,https://github.com/jonls/redshift
-glorytun,https://github.com/angt/glorytun
-liblouisutdml,https://github.com/liblouis/liblouisutdml
-openpace,https://github.com/frankmorgner/openpace
-proftpd-mod_proxy,https://github.com/Castaglia/proftpd-mod_proxy
-f-stack,https://github.com/F-Stack/f-stack
-ior,https://github.com/hpc/ior
-watchdogd,https://github.com/troglobit/watchdogd
-gnome-inform7,https://github.com/ptomato/gnome-inform7
-sled,https://github.com/shinyblink/sled
-Microduino-IDE-Support,https://github.com/wasdpkj/Microduino-IDE-Support
-aws-c-common,https://github.com/awslabs/aws-c-common
-noise-repellent,https://github.com/lucianodato/noise-repellent
-Little-CMS,https://github.com/mm2/Little-CMS
-Adafruit_nRF52_Bootloader,https://github.com/adafruit/Adafruit_nRF52_Bootloader
-jasper,https://github.com/jasper-software/jasper
-can-utils,https://github.com/linux-can/can-utils
-masscan,https://github.com/robertdavidgraham/masscan
-balde,https://github.com/balde/balde
-libfreefare,https://github.com/nfc-tools/libfreefare
-GNUSim8085,https://github.com/GNUSim8085/GNUSim8085
-pick,https://github.com/mptre/pick
-ksm,https://github.com/asamy/ksm
-libctl,https://github.com/NanoComp/libctl
-libepoxy,https://github.com/anholt/libepoxy
-libfort,https://github.com/seleznevae/libfort
-cpuid,https://github.com/tycho/cpuid
-x11vnc,https://github.com/LibVNC/x11vnc
-dreamchess,https://github.com/dreamchess/dreamchess
-umockdev,https://github.com/martinpitt/umockdev
-nats.c,https://github.com/nats-io/nats.c
-binjgb,https://github.com/binji/binjgb
-mcfgthread,https://github.com/lhmouse/mcfgthread
-bluez-alsa,https://github.com/Arkq/bluez-alsa
-rtty,https://github.com/zhaojh329/rtty
-ExternData,https://github.com/modelica-3rdparty/ExternData
-c-tap-harness,https://github.com/rra/c-tap-harness
-irqbalance,https://github.com/Irqbalance/irqbalance
-OpenHMD,https://github.com/OpenHMD/OpenHMD
-vmemcache,https://github.com/pmem/vmemcache
-nxdk,https://github.com/XboxDev/nxdk
-clr-boot-manager,https://github.com/clearlinux/clr-boot-manager
-digest,https://github.com/eddelbuettel/digest
-epk2extract,https://github.com/openlgtv/epk2extract
-ENet-CSharp,https://github.com/nxrighthere/ENet-CSharp
-ChameleonMini-rebooted,https://github.com/iceman1001/ChameleonMini-rebooted
-mod-host,https://github.com/moddevices/mod-host
-fzy,https://github.com/jhawthorn/fzy
-sjs,https://github.com/saghul/sjs
-opusfile,https://github.com/xiph/opusfile
-libuev,https://github.com/troglobit/libuev
-grub4dos,https://github.com/chenall/grub4dos
-logswan,https://github.com/fcambus/logswan
-gdk,https://github.com/Blockstream/gdk
-sshfs,https://github.com/libfuse/sshfs
-libtelnet,https://github.com/seanmiddleditch/libtelnet
-biscuit,https://github.com/zhou-lab/biscuit
-librtlsdr,https://github.com/steve-m/librtlsdr
-vx32,https://github.com/0intro/vx32
-twolame,https://github.com/njh/twolame
-cminpack,https://github.com/devernay/cminpack
-sftpserver,https://github.com/ewxrjk/sftpserver
-arduino-device-lib,https://github.com/TheThingsNetwork/arduino-device-lib
-stream-lua-nginx-module,https://github.com/openresty/stream-lua-nginx-module
-oppai-ng,https://github.com/Francesco149/oppai-ng
-ccnet,https://github.com/haiwen/ccnet
-lexbor,https://github.com/lexbor/lexbor
-i3lock,https://github.com/i3/i3lock
-par,https://github.com/prideout/par
-Adafruit-GFX-Library,https://github.com/adafruit/Adafruit-GFX-Library
-munin-c,https://github.com/munin-monitoring/munin-c
-libevt,https://github.com/libyal/libevt
-yabar,https://github.com/geommer/yabar
-libvmod-redis,https://github.com/carlosabalde/libvmod-redis
-FiSH-irssi,https://github.com/falsovsky/FiSH-irssi
-bcal,https://github.com/jarun/bcal
-esnacc-ng,https://github.com/esnacc/esnacc-ng
-libhydrogen,https://github.com/jedisct1/libhydrogen
-aws-c-io,https://github.com/awslabs/aws-c-io
-varnish-modules,https://github.com/varnish/varnish-modules
-rcppredis,https://github.com/eddelbuettel/rcppredis
-cgltf,https://github.com/jkuhlmann/cgltf
-kafkacat,https://github.com/edenhill/kafkacat
-gdigi,https://github.com/desowin/gdigi
-abcm2ps,https://github.com/leesavide/abcm2ps
-proxytunnel,https://github.com/proxytunnel/proxytunnel
-libphenom,https://github.com/facebookarchive/libphenom
-evdi,https://github.com/DisplayLink/evdi
-enca,https://github.com/nijel/enca
-M7M01_MuEukaron,https://github.com/EDI-Systems/M7M01_MuEukaron
-libva-utils,https://github.com/intel/libva-utils
-Enterprise,https://github.com/SevenBits/Enterprise
-rem,https://github.com/creytiv/rem
-SDL_kitchensink,https://github.com/katajakasa/SDL_kitchensink
-sntpd,https://github.com/troglobit/sntpd
-Virtual-Assistant,https://github.com/ritwik12/Virtual-Assistant
-port-mirroring,https://github.com/mmaraya/port-mirroring
-telize,https://github.com/fcambus/telize
-zhe,https://github.com/atolab/zhe
-Tilengine,https://github.com/megamarc/Tilengine
-Netopeer2,https://github.com/CESNET/Netopeer2
-libvmod-curl,https://github.com/varnish/libvmod-curl
-ocaml-freestanding,https://github.com/mirage/ocaml-freestanding

python/data/test-valid2.sh

@@ -1,49 +0,0 @@
-#!/bin/bash
-EXEFILE=$3
-ANGELIXPRE=$ANGELIX_RUN
-INPUT_NAME=$1
-OUTPUT_NAME=$2
-MY_TIMEOUT=$4
-MY_NAME=my_output
-# rm -R $MY_NAME* &>/dev/null
-run_test()
-{
-test_case="$1"
-
-echo $MY_TIMEOUT
-if ! `which gtime` -o $MY_TIMEOUT -f "(%es)" gtimeout -k 50s 50s $ANGELIXPRE $EXEFILE < $test_case | sed -e '/^$/d' -e 's/^[ \t]*//' > $test_case$MY_NAME; then
-echo Sample test \#$test_case: Runtime Error`cat $MY_TIMEOUT`
-echo ========================================
-echo Sample Input \#$test_case
-        cat $test_case
-exit 2
-else
-if grep "Command" $MY_TIMEOUT; then 
- echo "ERROR";
- exit -1;
-fi
-	if diff --brief -w $test_case$MY_NAME $2; then
-echo Sample test \#$test_case: Accepted`cat $MY_TIMEOUT`
-exit 0
-	else
-echo Sample test \#$test_case: Wrong Answer`cat $MY_TIMEOUT`
-echo ========================================
- echo Sample Input \#$test_case
- cat $test_case
-echo ========================================
-echo Sample Output \#$2
-cat $2
-echo ========================================
-echo My Output \#$test_case$MY_NAME
-cat $test_case$MY_NAME
-echo ========================================
-exit 1
-fi
-    fi
-}
-
-run_test "$INPUT_NAME" "$OUTPUT_NAME" ;
-
-esac
-exit 1
-

python/data/tests-list/gmp/README.md

@@ -1,23 +0,0 @@
-## Running `gmp` bugs
-
-After running the container you need to follow the following
-steps to prepare `SOSRepair` for running:
-
-1. Copy `makeout`, `compile.sh`, `test.sh` and `tests-list` to
-the container's `/experiment/`.
-2. Copy `settings.py` to the container's `/opt/sosrepair/sosrepair`.
-3. In the container, reconfigure the project with coverage flags:
-```
-cd /experiment/src
-./configure "CFLAGS=-fprofile-arcs -ftest-coverage" "CXXFLAGS=-fprofile-arcs -ftest-coverage" "LDFLAGS=-lgcov --coverage"
-make clean
-make
-```
-4. Run `/opt/sosrepair/prepare/setup.sh`.
-5. Set proper permissions by running `sudo chmod -R 777 /opt/sosrepair/sosrepair`.
-6. Setup environment variables:
-```
-export PYTHONPATH="/opt/sosrepair/bindings:${PYTHONPATH}"
-export CPATH=":/opt/sosrepair/include"
-export PATH="/opt/sosrepair/bin:$PATH"
-```

python/data/tests-list/gmp/compile.sh

@@ -1,8 +0,0 @@
-#!/bin/bash
-DIR=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
-
-cd $DIR/src
-#make clean
-(make && exit 0)|| exit 1
-
-

python/data/tests-list/gmp/copy.sh

@@ -1,10 +0,0 @@
-#!/bin/bash
-
-
-CONTAINER=$1
-BUG=$2
-
-docker cp compile.sh $CONTAINER:/experiment/
-docker cp $BUG/test.sh $CONTAINER:/experiment/
-docker cp $BUG/tests-list.txt $CONTAINER:/experiment/
-docker cp $BUG/settings.py $CONTAINER:/opt/sosrepair/sosrepair/

python/data/tests-list/gmp/gmp-bug-13420-13421/notes.md

@@ -1,3 +0,0 @@
-For running SOS+ on this bug, we manually helped in finding
-correct set of live variables. Number of live variables are
-very high. So we limit that to `b2p`, `n`, `rp`, and `tp`.

python/data/tests-list/gmp/gmp-bug-13420-13421/settings.py

@@ -1,83 +0,0 @@
-"""
-This file includes all the settings that could be modified for running SearchRepair/SOSRepair
-
-* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
-* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
- DB
-* Z3_COMMAND: The z3 command on this machine.
-* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
-* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
-* DATABASE: Information about the database.
-* LOGGING: Settings for logging.
-* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
-* VALID_TYPES: The variable types that are right now supported by SR.
------- Settings related to file under repair -------
-* TESTS_LIST: The path to a list of the tests that could be run on the file
-* TEST_SCRIPT: The path to a script that will run the test
-* COMPILE_SCRIPT: The path to a script that will compile the code
-* FAULTY_CODE: The path to the faulty code (a C file)
-* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
-* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
-automatically)
-* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
-* SOSREPAIR: If set to False it will only run SearchRepair features
-* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
-* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
-"""
-__author__ = 'Afsoon Afzal'
-
-import logging
-
-
-LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
-
-GENERATE_DB_PATH = '/experiment/src'
-
-Z3_COMMAND = '/opt/sosrepair/bin/z3'
-
-LARGEST_SNIPPET = 7
-SMALLEST_SNIPPET = 3
-
-DATABASE = {
-    'db_name': 'testdocker',
-    'user': 'docker',
-    'password': '1234'
-}
-
-LOGGING = {
-    'filename': 'logs/repair.log',
-    'level': logging.DEBUG
-}
-
-logging.basicConfig(**LOGGING)
-
-MAX_SUSPICIOUS_LINES = 10
-
-VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
-
-TESTS_LIST = "/experiment/tests-list.txt"
-TEST_SCRIPT = "/experiment/test.sh"
-TEST_SCRIPT_TYPE = "/bin/bash"
-COMPILE_SCRIPT = "/experiment/compile.sh"
-FAULTY_CODE = "/experiment/src/mpn/generic/powm.c"
-
-
-COMPILE_EXTRA_ARGS = [
-                    "-I/experiment/src",
-                    "-I/usr/include",
-]
-
-MAKE_OUTPUT = "/experiment/makeout"
-
-METHOD_RANGE = (144, 483)
-# IF SOS+
-# METHOD_RANGE = (212, 213)
-
-SOSREPAIR = True
-
-NUMBER_OF_TIMES_RERUNNING_TESTS = 1
-EXCLUDE_SCANF = False
-
-BULK_RUN_PATH = ""
-
-GCOV_OBJECTS = "/experiment/src/mpn/.libs/"

python/data/tests-list/gmp/gmp-bug-13420-13421/test.sh

@@ -1,165 +0,0 @@
-#!/bin/bash
-run_abbrev=False
-bugrev=13420
-time_limit=25
-dir=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
-run_test()
-{
-    cd $dir/src
-    ../gmp-run-tests.pl $1 $run_abbrev
-    if [ $? = 0 ] ; then
-        echo ""
-        echo "PASS"
-    else
-        echo ""
-        echo "FAIL"
-    fi
-    popd > /dev/null
-    return 0
-}
-case $1 in
-    p1) run_test 1 && exit 0 ;; 
-    p2) run_test 2 && exit 0 ;; 
-    p3) run_test 3 && exit 0 ;; 
-    p4) run_test 4 && exit 0 ;; 
-    p5) run_test 5 && exit 0 ;; 
-    p6) run_test 6 && exit 0 ;; 
-    p7) run_test 7 && exit 0 ;; 
-    p8) run_test 8 && exit 0 ;; 
-    p9) run_test 9 && exit 0 ;; 
-    p10) run_test 10 && exit 0 ;; 
-    p11) run_test 11 && exit 0 ;; 
-    p12) run_test 12 && exit 0 ;; 
-    p13) run_test 13 && exit 0 ;; 
-    p14) run_test 14 && exit 0 ;; 
-    p15) run_test 15 && exit 0 ;; 
-    p16) run_test 16 && exit 0 ;; 
-    p17) run_test 17 && exit 0 ;; 
-    p18) run_test 18 && exit 0 ;; 
-    p19) run_test 19 && exit 0 ;; 
-    p20) run_test 20 && exit 0 ;; 
-    p21) run_test 21 && exit 0 ;; 
-    p22) run_test 22 && exit 0 ;; 
-    p23) run_test 23 && exit 0 ;; 
-    p24) run_test 24 && exit 0 ;; 
-    p25) run_test 25 && exit 0 ;; 
-    p26) run_test 26 && exit 0 ;; 
-    p27) run_test 27 && exit 0 ;; 
-    p28) run_test 28 && exit 0 ;; 
-    p29) run_test 29 && exit 0 ;; 
-    p30) run_test 31 && exit 0 ;; 
-    p31) run_test 32 && exit 0 ;; 
-    p32) run_test 33 && exit 0 ;; 
-    p33) run_test 35 && exit 0 ;; 
-    p34) run_test 36 && exit 0 ;; 
-    p35) run_test 37 && exit 0 ;; 
-    p36) run_test 39 && exit 0 ;; 
-    p37) run_test 40 && exit 0 ;; 
-    p38) run_test 41 && exit 0 ;; 
-    p39) run_test 42 && exit 0 ;; 
-    p40) run_test 43 && exit 0 ;; 
-    p41) run_test 44 && exit 0 ;; 
-    p42) run_test 45 && exit 0 ;; 
-    p43) run_test 46 && exit 0 ;; 
-    p44) run_test 47 && exit 0 ;; 
-    p45) run_test 48 && exit 0 ;; 
-    p46) run_test 49 && exit 0 ;; 
-    p47) run_test 50 && exit 0 ;; 
-    p48) run_test 51 && exit 0 ;; 
-    p49) run_test 52 && exit 0 ;; 
-    p50) run_test 53 && exit 0 ;; 
-    p51) run_test 54 && exit 0 ;; 
-    p52) run_test 55 && exit 0 ;; 
-    p53) run_test 56 && exit 0 ;; 
-    p54) run_test 57 && exit 0 ;; 
-    p55) run_test 58 && exit 0 ;; 
-    p56) run_test 59 && exit 0 ;; 
-    p57) run_test 60 && exit 0 ;; 
-    p58) run_test 61 && exit 0 ;; 
-    p59) run_test 62 && exit 0 ;; 
-    p60) run_test 63 && exit 0 ;; 
-    p61) run_test 64 && exit 0 ;; 
-    p62) run_test 65 && exit 0 ;; 
-    p63) run_test 66 && exit 0 ;; 
-    p64) run_test 67 && exit 0 ;; 
-    p65) run_test 68 && exit 0 ;; 
-    p66) run_test 69 && exit 0 ;; 
-    p67) run_test 70 && exit 0 ;; 
-    p68) run_test 71 && exit 0 ;; 
-    p69) run_test 72 && exit 0 ;; 
-    p70) run_test 73 && exit 0 ;; 
-    p71) run_test 74 && exit 0 ;; 
-    p72) run_test 75 && exit 0 ;; 
-    p73) run_test 76 && exit 0 ;; 
-    p74) run_test 77 && exit 0 ;; 
-    p75) run_test 78 && exit 0 ;; 
-    p76) run_test 79 && exit 0 ;; 
-    p77) run_test 80 && exit 0 ;; 
-    p78) run_test 81 && exit 0 ;; 
-    p79) run_test 82 && exit 0 ;; 
-    p80) run_test 83 && exit 0 ;; 
-    p81) run_test 84 && exit 0 ;; 
-    p82) run_test 85 && exit 0 ;; 
-    p83) run_test 86 && exit 0 ;; 
-    p84) run_test 87 && exit 0 ;; 
-    p85) run_test 88 && exit 0 ;; 
-    p86) run_test 89 && exit 0 ;; 
-    p87) run_test 90 && exit 0 ;; 
-    p88) run_test 91 && exit 0 ;; 
-    p89) run_test 92 && exit 0 ;; 
-    p90) run_test 93 && exit 0 ;; 
-    p91) run_test 94 && exit 0 ;; 
-    p92) run_test 95 && exit 0 ;; 
-    p93) run_test 96 && exit 0 ;; 
-    p94) run_test 97 && exit 0 ;; 
-    p95) run_test 98 && exit 0 ;; 
-    p96) run_test 99 && exit 0 ;; 
-    p97) run_test 100 && exit 0 ;; 
-    p98) run_test 101 && exit 0 ;; 
-    p99) run_test 102 && exit 0 ;; 
-    p100) run_test 103 && exit 0 ;; 
-    p101) run_test 104 && exit 0 ;; 
-    p102) run_test 105 && exit 0 ;; 
-    p103) run_test 106 && exit 0 ;; 
-    p104) run_test 107 && exit 0 ;; 
-    p105) run_test 108 && exit 0 ;; 
-    p106) run_test 109 && exit 0 ;; 
-    p107) run_test 110 && exit 0 ;; 
-    p108) run_test 111 && exit 0 ;; 
-    p109) run_test 112 && exit 0 ;; 
-    p110) run_test 113 && exit 0 ;; 
-    p111) run_test 114 && exit 0 ;; 
-    p112) run_test 115 && exit 0 ;; 
-    p113) run_test 116 && exit 0 ;; 
-    p114) run_test 117 && exit 0 ;; 
-    p115) run_test 118 && exit 0 ;; 
-    p116) run_test 119 && exit 0 ;; 
-    p117) run_test 120 && exit 0 ;; 
-    p118) run_test 121 && exit 0 ;; 
-    p119) run_test 122 && exit 0 ;; 
-    p120) run_test 123 && exit 0 ;; 
-    p121) run_test 124 && exit 0 ;; 
-    p122) run_test 125 && exit 0 ;; 
-    p123) run_test 126 && exit 0 ;; 
-    p124) run_test 127 && exit 0 ;; 
-    p125) run_test 128 && exit 0 ;; 
-    p126) run_test 129 && exit 0 ;; 
-    p127) run_test 130 && exit 0 ;; 
-    p128) run_test 131 && exit 0 ;; 
-    p129) run_test 132 && exit 0 ;; 
-    p130) run_test 133 && exit 0 ;; 
-    p131) run_test 134 && exit 0 ;; 
-    p132) run_test 135 && exit 0 ;; 
-    p133) run_test 136 && exit 0 ;; 
-    p134) run_test 139 && exit 0 ;; 
-    p135) run_test 140 && exit 0 ;; 
-    p136) run_test 141 && exit 0 ;; 
-    p137) run_test 142 && exit 0 ;; 
-    p138) run_test 143 && exit 0 ;; 
-    p139) run_test 144 && exit 0 ;; 
-    p140) run_test 146 && exit 0 ;; 
-    n1) run_test 30 && exit 0 ;; 
-    n2) run_test 34 && exit 0 ;; 
-    n3) run_test 38 && exit 0 ;; 
-esac
-exit 1

python/data/tests-list/gmp/gmp-bug-13420-13421/tests-list.txt

@@ -1,140 +0,0 @@
-n1
-n2
-p1
-p2
-p3
-p4
-p5
-p6
-p7
-p8
-p9
-p10
-p11
-p12
-p13
-p14
-p15
-p16
-p17
-p18
-p19
-p20
-p21
-p22
-p23
-p24
-p25
-p26
-p27
-p28
-p29
-p30
-p31
-p32
-p33
-p34
-p36
-p37
-p38
-p39
-p40
-p41
-p42
-p43
-p44
-p46
-p47
-p48
-p49
-p50
-p51
-p52
-p53
-p54
-p55
-p56
-p57
-p58
-p59
-p60
-p61
-p62
-p63
-p64
-p65
-p66
-p67
-p68
-p69
-p70
-p71
-p72
-p73
-p74
-p75
-p76
-p77
-p78
-p79
-p80
-p81
-p82
-p83
-p84
-p85
-p86
-p87
-p88
-p89
-p90
-p91
-p92
-p93
-p94
-p95
-p96
-p97
-p98
-p99
-p100
-p101
-p102
-p103
-p104
-p105
-p106
-p107
-p108
-p109
-p110
-p111
-p112
-p113
-p114
-p115
-p116
-p117
-p118
-p119
-p120
-p121
-p122
-p123
-p124
-p125
-p126
-p127
-p128
-p129
-p130
-p131
-p132
-p133
-p134
-p135
-p136
-p137
-p138
-p139
-p140

python/data/tests-list/gmp/gmp-bug-14166-14167/settings.py

@@ -1,83 +0,0 @@
-"""
-This file includes all the settings that could be modified for running SearchRepair/SOSRepair
-
-* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
-* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
- DB
-* Z3_COMMAND: The z3 command on this machine.
-* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
-* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
-* DATABASE: Information about the database.
-* LOGGING: Settings for logging.
-* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
-* VALID_TYPES: The variable types that are right now supported by SR.
------- Settings related to file under repair -------
-* TESTS_LIST: The path to a list of the tests that could be run on the file
-* TEST_SCRIPT: The path to a script that will run the test
-* COMPILE_SCRIPT: The path to a script that will compile the code
-* FAULTY_CODE: The path to the faulty code (a C file)
-* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
-* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
-automatically)
-* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
-* SOSREPAIR: If set to False it will only run SearchRepair features
-* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
-* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
-"""
-__author__ = 'Afsoon Afzal'
-
-import logging
-
-
-LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
-
-GENERATE_DB_PATH = '/experiment/src'
-
-Z3_COMMAND = '/opt/sosrepair/bin/z3'
-
-LARGEST_SNIPPET = 7
-SMALLEST_SNIPPET = 3
-
-DATABASE = {
-    'db_name': 'testdocker',
-    'user': 'docker',
-    'password': '1234'
-}
-
-LOGGING = {
-    'filename': 'logs/repair.log',
-    'level': logging.DEBUG
-}
-
-logging.basicConfig(**LOGGING)
-
-MAX_SUSPICIOUS_LINES = 10
-
-VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
-
-TESTS_LIST = "/experiment/tests-list.txt"
-TEST_SCRIPT = "/experiment/test.sh"
-TEST_SCRIPT_TYPE = "/bin/bash"
-COMPILE_SCRIPT = "/experiment/compile.sh"
-FAULTY_CODE = "/experiment/src/mpz/gcdext.c"
-
-
-COMPILE_EXTRA_ARGS = [
-                    "-I/experiment/src",
-                    "-I/usr/include",
-]
-
-MAKE_OUTPUT = "/experiment/makeout"
-
-METHOD_RANGE = (29, 119)
-# IF SOS+
-# METHOD_RANGE = (56, 57)
-
-SOSREPAIR = True
-
-NUMBER_OF_TIMES_RERUNNING_TESTS = 1
-EXCLUDE_SCANF = False
-
-BULK_RUN_PATH = ""
-
-GCOV_OBJECTS = "/experiment/src/mpz/.libs"

python/data/tests-list/gmp/gmp-bug-14166-14167/test.sh

@@ -1,167 +0,0 @@
-#!/bin/bash
-run_abbrev=False
-bugrev=13420
-time_limit=25
-dir=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
-run_test()
-{
-    cd $dir/src
-    ../gmp-run-tests.pl $1 $run_abbrev
-    if [ $? = 0 ] ; then
-        echo ""
-        echo "PASS"
-    else
-        echo ""
-        echo "FAIL"
-    fi
-    popd > /dev/null
-    return 0
-}
-case $1 in
-    p1) run_test 1 && exit 0 ;; 
-    p2) run_test 2 && exit 0 ;; 
-    p3) run_test 3 && exit 0 ;; 
-    p4) run_test 4 && exit 0 ;; 
-    p5) run_test 5 && exit 0 ;; 
-    p6) run_test 6 && exit 0 ;; 
-    p7) run_test 7 && exit 0 ;; 
-    p8) run_test 8 && exit 0 ;; 
-    p9) run_test 9 && exit 0 ;; 
-    p10) run_test 10 && exit 0 ;; 
-    p11) run_test 11 && exit 0 ;; 
-    p12) run_test 12 && exit 0 ;; 
-    p13) run_test 13 && exit 0 ;; 
-    p14) run_test 14 && exit 0 ;; 
-    p15) run_test 15 && exit 0 ;; 
-    p16) run_test 16 && exit 0 ;; 
-    p17) run_test 17 && exit 0 ;; 
-    p18) run_test 18 && exit 0 ;; 
-    p19) run_test 20 && exit 0 ;; 
-    p20) run_test 21 && exit 0 ;; 
-    p21) run_test 22 && exit 0 ;; 
-    p22) run_test 23 && exit 0 ;; 
-    p23) run_test 24 && exit 0 ;; 
-    p24) run_test 25 && exit 0 ;; 
-    p25) run_test 26 && exit 0 ;; 
-    p26) run_test 27 && exit 0 ;; 
-    p27) run_test 28 && exit 0 ;; 
-    p28) run_test 29 && exit 0 ;; 
-    p29) run_test 30 && exit 0 ;; 
-    p30) run_test 31 && exit 0 ;; 
-    p31) run_test 32 && exit 0 ;; 
-    p32) run_test 33 && exit 0 ;; 
-    p33) run_test 34 && exit 0 ;; 
-    p34) run_test 35 && exit 0 ;; 
-    p35) run_test 36 && exit 0 ;; 
-    p36) run_test 37 && exit 0 ;; 
-    p37) run_test 38 && exit 0 ;; 
-    p38) run_test 39 && exit 0 ;; 
-    p39) run_test 40 && exit 0 ;; 
-    p40) run_test 41 && exit 0 ;; 
-    p41) run_test 42 && exit 0 ;; 
-    p42) run_test 43 && exit 0 ;; 
-    p43) run_test 44 && exit 0 ;; 
-    p44) run_test 45 && exit 0 ;; 
-    p45) run_test 46 && exit 0 ;; 
-    p46) run_test 47 && exit 0 ;; 
-    p47) run_test 48 && exit 0 ;; 
-    p48) run_test 49 && exit 0 ;; 
-    p49) run_test 50 && exit 0 ;; 
-    p50) run_test 52 && exit 0 ;; 
-    p51) run_test 53 && exit 0 ;; 
-    p52) run_test 54 && exit 0 ;; 
-    p53) run_test 55 && exit 0 ;; 
-    p54) run_test 56 && exit 0 ;; 
-    p55) run_test 57 && exit 0 ;; 
-    p56) run_test 58 && exit 0 ;; 
-    p57) run_test 59 && exit 0 ;; 
-    p58) run_test 60 && exit 0 ;; 
-    p59) run_test 61 && exit 0 ;; 
-    p60) run_test 62 && exit 0 ;; 
-    p61) run_test 63 && exit 0 ;; 
-    p62) run_test 64 && exit 0 ;; 
-    p63) run_test 65 && exit 0 ;; 
-    p64) run_test 66 && exit 0 ;; 
-    p65) run_test 67 && exit 0 ;; 
-    p66) run_test 68 && exit 0 ;; 
-    p67) run_test 69 && exit 0 ;; 
-    p68) run_test 70 && exit 0 ;; 
-    p69) run_test 71 && exit 0 ;; 
-    p70) run_test 72 && exit 0 ;; 
-    p71) run_test 73 && exit 0 ;; 
-    p72) run_test 74 && exit 0 ;; 
-    p73) run_test 75 && exit 0 ;; 
-    p74) run_test 76 && exit 0 ;; 
-    p75) run_test 77 && exit 0 ;; 
-    p76) run_test 78 && exit 0 ;; 
-    p77) run_test 79 && exit 0 ;; 
-    p78) run_test 80 && exit 0 ;; 
-    p79) run_test 81 && exit 0 ;; 
-    p80) run_test 82 && exit 0 ;; 
-    p81) run_test 83 && exit 0 ;; 
-    p82) run_test 84 && exit 0 ;; 
-    p83) run_test 85 && exit 0 ;; 
-    p84) run_test 86 && exit 0 ;; 
-    p85) run_test 87 && exit 0 ;; 
-    p86) run_test 88 && exit 0 ;; 
-    p87) run_test 89 && exit 0 ;; 
-    p88) run_test 90 && exit 0 ;; 
-    p89) run_test 91 && exit 0 ;; 
-    p90) run_test 92 && exit 0 ;; 
-    p91) run_test 93 && exit 0 ;; 
-    p92) run_test 94 && exit 0 ;; 
-    p93) run_test 95 && exit 0 ;; 
-    p94) run_test 96 && exit 0 ;; 
-    p95) run_test 97 && exit 0 ;; 
-    p96) run_test 98 && exit 0 ;; 
-    p97) run_test 99 && exit 0 ;; 
-    p98) run_test 100 && exit 0 ;; 
-    p99) run_test 101 && exit 0 ;; 
-    p100) run_test 102 && exit 0 ;; 
-    p101) run_test 103 && exit 0 ;; 
-    p102) run_test 104 && exit 0 ;; 
-    p103) run_test 105 && exit 0 ;; 
-    p104) run_test 106 && exit 0 ;; 
-    p105) run_test 107 && exit 0 ;; 
-    p106) run_test 108 && exit 0 ;; 
-    p107) run_test 109 && exit 0 ;; 
-    p108) run_test 110 && exit 0 ;; 
-    p109) run_test 111 && exit 0 ;; 
-    p110) run_test 112 && exit 0 ;; 
-    p111) run_test 113 && exit 0 ;; 
-    p112) run_test 114 && exit 0 ;; 
-    p113) run_test 115 && exit 0 ;; 
-    p114) run_test 116 && exit 0 ;; 
-    p115) run_test 117 && exit 0 ;; 
-    p116) run_test 118 && exit 0 ;; 
-    p117) run_test 119 && exit 0 ;; 
-    p118) run_test 120 && exit 0 ;; 
-    p119) run_test 121 && exit 0 ;; 
-    p120) run_test 122 && exit 0 ;; 
-    p121) run_test 123 && exit 0 ;; 
-    p122) run_test 124 && exit 0 ;; 
-    p123) run_test 125 && exit 0 ;; 
-    p124) run_test 126 && exit 0 ;; 
-    p125) run_test 127 && exit 0 ;; 
-    p126) run_test 128 && exit 0 ;; 
-    p127) run_test 129 && exit 0 ;; 
-    p128) run_test 130 && exit 0 ;; 
-    p129) run_test 131 && exit 0 ;; 
-    p130) run_test 132 && exit 0 ;; 
-    p131) run_test 133 && exit 0 ;; 
-    p132) run_test 134 && exit 0 ;; 
-    p133) run_test 135 && exit 0 ;; 
-    p134) run_test 136 && exit 0 ;; 
-    p135) run_test 137 && exit 0 ;; 
-    p136) run_test 138 && exit 0 ;; 
-    p137) run_test 139 && exit 0 ;; 
-    p138) run_test 140 && exit 0 ;; 
-    p139) run_test 141 && exit 0 ;; 
-    p140) run_test 142 && exit 0 ;; 
-    p141) run_test 143 && exit 0 ;; 
-    p142) run_test 144 && exit 0 ;; 
-    p143) run_test 145 && exit 0 ;; 
-    p144) run_test 146 && exit 0 ;; 
-    n1) run_test 19 && exit 0 ;; 
-esac
-exit 1

python/data/tests-list/gmp/gmp-bug-14166-14167/tests-list.txt

@@ -1,142 +0,0 @@
-n1
-p1
-p2
-p3
-p4
-p5
-p6
-p7
-p8
-p9
-p10
-p11
-p12
-p13
-p14
-p15
-p16
-p17
-p18
-p19
-p20
-p21
-p22
-p23
-p24
-p25
-p26
-p27
-p28
-p29
-p30
-p31
-p32
-p33
-p34
-p36
-p37
-p38
-p39
-p40
-p41
-p42
-p43
-p44
-p46
-p48
-p49
-p50
-p51
-p52
-p53
-p54
-p55
-p56
-p57
-p58
-p59
-p60
-p61
-p62
-p63
-p64
-p65
-p66
-p67
-p68
-p69
-p70
-p71
-p72
-p73
-p74
-p75
-p76
-p77
-p78
-p79
-p80
-p81
-p82
-p83
-p84
-p85
-p86
-p87
-p88
-p89
-p90
-p91
-p92
-p93
-p94
-p95
-p96
-p97
-p98
-p99
-p100
-p101
-p102
-p103
-p104
-p105
-p106
-p107
-p108
-p109
-p110
-p111
-p112
-p113
-p114
-p115
-p116
-p117
-p118
-p119
-p120
-p121
-p122
-p123
-p124
-p125
-p126
-p127
-p128
-p129
-p130
-p131
-p132
-p133
-p134
-p135
-p136
-p137
-p138
-p139
-p140
-p141
-p142
-p143
-p144

python/data/tests-list/gzip/README.md

@@ -1,23 +0,0 @@
-## Running `gzip` bugs
-
-After running the container you need to follow the following
-steps to prepare `SOSRepair` for running:
-
-1. Copy `makeout`, `compile.sh`, `test.sh` and `tests-list` to
-the container's `/experiment/`.
-2. Copy `settings.py` to the container's `/opt/sosrepair/sosrepair`.
-3. In the container, reconfigure the project with coverage flags:
-```
-cd /experiment/src
-./configure "CFLAGS=-m32 -fprofile-arcs -ftest-coverage" "CXXFLAGS=-m32 -fprofile-arcs -ftest-coverage" "LDFLAGS=-m32 -lgcov"
-make clean
-make
-```
-4. Run `/opt/sosrepair/prepare/setup.sh`.
-5. Set proper permissions by running `sudo chmod -R 777 /opt/sosrepair/sosrepair`.
-6. Setup environment variables:
-```
-export PYTHONPATH="/opt/sosrepair/bindings:${PYTHONPATH}"
-export CPATH=":/opt/sosrepair/include"
-export PATH="/opt/sosrepair/bin:$PATH"
-```

python/data/tests-list/gzip/compile.sh

@@ -1,19 +0,0 @@
-#!/bin/bash
-TIME_LIMIT=60
-HERE_DIR=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
-PATCH_EXE=$1
-PATCH_DIR=$(dirname "$PATCH_EXE")
-PROJECT_DIR="$HERE_DIR/src"
-
-# Remove the object file for the affected source code file
-# cp "$PATCH_DIR/inflate.c" "$PROJECT_DIR/inflate.c" && \
-pushd "$PROJECT_DIR" && \
-rm -f inflate.o && \
-
-# Clear the results of any test executions for any previous patches
-# pushd tests && \
-# make clean && \
-# popd && \
-
-# Rebuild the rest of the project
-timeout $TIME_LIMIT make || exit 1

python/data/tests-list/gzip/copy.sh

@@ -1,10 +0,0 @@
-#!/bin/bash
-
-
-CONTAINER=$1
-BUG=$2
-
-docker cp compile.sh $CONTAINER:/experiment/
-docker cp $BUG/test.sh $CONTAINER:/experiment/
-docker cp $BUG/tests-list.txt $CONTAINER:/experiment/
-docker cp $BUG/settings.py $CONTAINER:/opt/sosrepair/sosrepair/

python/data/tests-list/gzip/gzip-bug-2009-08-16-3fe0caeada-39a362ae9d/settings.py

@@ -1,80 +0,0 @@
-"""
-This file includes all the settings that could be modified for running SearchRepair/SOSRepair
-
-* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
-* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
- DB
-* Z3_COMMAND: The z3 command on this machine.
-* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
-* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
-* DATABASE: Information about the database.
-* LOGGING: Settings for logging.
-* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
-* VALID_TYPES: The variable types that are right now supported by SR.
------- Settings related to file under repair -------
-* TESTS_LIST: The path to a list of the tests that could be run on the file
-* TEST_SCRIPT: The path to a script that will run the test
-* COMPILE_SCRIPT: The path to a script that will compile the code
-* FAULTY_CODE: The path to the faulty code (a C file)
-* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
-* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
-automatically)
-* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
-* SOSREPAIR: If set to False it will only run SearchRepair features
-* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
-* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
-"""
-__author__ = 'Afsoon Afzal'
-
-import logging
-
-
-LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
-
-GENERATE_DB_PATH = '/experiment/src'
-
-Z3_COMMAND = '/opt/sosrepair/bin/z3'
-
-LARGEST_SNIPPET = 7
-SMALLEST_SNIPPET = 3
-
-DATABASE = {
-    'db_name': 'testdocker',
-    'user': 'docker',
-    'password': '1234'
-}
-
-LOGGING = {
-    'filename': 'logs/repair.log',
-    'level': logging.DEBUG
-}
-
-logging.basicConfig(**LOGGING)
-
-MAX_SUSPICIOUS_LINES = 10
-
-VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
-
-TESTS_LIST = "/experiment/tests-list.txt"
-TEST_SCRIPT = "/experiment/test.sh"
-TEST_SCRIPT_TYPE = "/bin/bash"
-COMPILE_SCRIPT = "/experiment/compile.sh"
-FAULTY_CODE = "/experiment/src/inflate.c"
-
-
-COMPILE_EXTRA_ARGS = [
-                    "-I/usr/include",
-]
-
-MAKE_OUTPUT = "/experiment/makeout"
-
-METHOD_RANGE = (300, 492)
-# IF SOS+
-# METHOD_RANGE = (338, 339)
-
-SOSREPAIR = True
-
-NUMBER_OF_TIMES_RERUNNING_TESTS = 1
-EXCLUDE_SCANF = False
-
-BULK_RUN_PATH = ""

python/data/tests-list/gzip/gzip-bug-2009-08-16-3fe0caeada-39a362ae9d/test.sh

@@ -1,24 +0,0 @@
-#!/bin/bash
-TEST_ID=$1
-DIR=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
-
-
-run_test()
-{
-    cd $DIR/src
-        timeout 5 perl $DIR/gzip-run-tests.pl $1
-    RESULT=$?
-    if [ $RESULT = 0 ] ; then
-	echo "PASS"
-    else
-	echo "FAIL"
-    fi
-    cd ..
-    return 0
-}
-case $TEST_ID in
-    p1) run_test 1 && exit 0 ;; 
-    p2) run_test 4 && exit 0 ;; 
-    n1) run_test 3 && exit 0 ;; 
-esac
-exit 1

python/data/tests-list/gzip/gzip-bug-2009-08-16-3fe0caeada-39a362ae9d/tests-list.txt

@@ -1,3 +0,0 @@
-n1
-p1
-p2

python/data/tests-list/gzip/gzip-bug-2009-09-26-a1d3d4019d-f17cbd13a1/notes.md

@@ -1,5 +0,0 @@
-For running SOS+ on this bug, we manually helped in finding
-correct set of live variables. Variable `ifd` is global variable
-therefore not considered by SOS+ as a live variable.
-We manually changed code in `fault_localization/suspicious_block.py`
-to include `ifd` as a variable.

python/data/tests-list/gzip/gzip-bug-2009-09-26-a1d3d4019d-f17cbd13a1/settings.py

@@ -1,80 +0,0 @@
-"""
-This file includes all the settings that could be modified for running SearchRepair/SOSRepair
-
-* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
-* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
- DB
-* Z3_COMMAND: The z3 command on this machine.
-* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
-* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
-* DATABASE: Information about the database.
-* LOGGING: Settings for logging.
-* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
-* VALID_TYPES: The variable types that are right now supported by SR.
------- Settings related to file under repair -------
-* TESTS_LIST: The path to a list of the tests that could be run on the file
-* TEST_SCRIPT: The path to a script that will run the test
-* COMPILE_SCRIPT: The path to a script that will compile the code
-* FAULTY_CODE: The path to the faulty code (a C file)
-* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
-* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
-automatically)
-* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
-* SOSREPAIR: If set to False it will only run SearchRepair features
-* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
-* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
-"""
-__author__ = 'Afsoon Afzal'
-
-import logging
-
-
-LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
-
-GENERATE_DB_PATH = '/experiment/src'
-
-Z3_COMMAND = '/opt/sosrepair/bin/z3'
-
-LARGEST_SNIPPET = 7
-SMALLEST_SNIPPET = 3
-
-DATABASE = {
-    'db_name': 'testdocker',
-    'user': 'docker',
-    'password': '1234'
-}
-
-LOGGING = {
-    'filename': 'logs/repair.log',
-    'level': logging.DEBUG
-}
-
-logging.basicConfig(**LOGGING)
-
-MAX_SUSPICIOUS_LINES = 10
-
-VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
-
-TESTS_LIST = "/experiment/tests-list.txt"
-TEST_SCRIPT = "/experiment/test.sh"
-TEST_SCRIPT_TYPE = "/bin/bash"
-COMPILE_SCRIPT = "/experiment/compile.sh"
-FAULTY_CODE = "/experiment/src/gzip.c"
-
-
-COMPILE_EXTRA_ARGS = [
-                    "-I/usr/include",
-]
-
-MAKE_OUTPUT = "/experiment/makeout"
-
-METHOD_RANGE = (608, 692)
-# IF SOS+
-# METHOD_RANGE = (653, 654)
-
-SOSREPAIR = True
-
-NUMBER_OF_TIMES_RERUNNING_TESTS = 1
-EXCLUDE_SCANF = False
-
-BULK_RUN_PATH = ""

python/data/tests-list/gzip/gzip-bug-2009-09-26-a1d3d4019d-f17cbd13a1/test.sh

@@ -1,25 +0,0 @@
-#!/bin/bash
-TEST_ID=$1
-DIR=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
-
-
-run_test()
-{
-    cd $DIR/src
-        timeout 5 /usr/bin/perl $DIR/gzip-run-tests.pl $1
-    RESULT=$?
-    if [ $RESULT = 0 ] ; then
-	echo "PASS"
-    else
-	echo "FAIL"
-    fi
-    cd ..
-    return 0
-}
-case $TEST_ID in
-    p1) run_test 1 && exit 0 ;; 
-    p2) run_test 3 && exit 0 ;; 
-    p3) run_test 4 && exit 0 ;; 
-    n1) run_test 7 && exit 0 ;; 
-esac
-exit 1

python/data/tests-list/gzip/gzip-bug-2009-09-26-a1d3d4019d-f17cbd13a1/tests-list.txt

@@ -1,4 +0,0 @@
-n1
-p1
-p2
-p3

python/data/tests-list/gzip/gzip-bug-2009-10-09-1a085b1446-118a107f2d/settings.py

@@ -1,80 +0,0 @@
-"""
-This file includes all the settings that could be modified for running SearchRepair/SOSRepair
-
-* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
-* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
- DB
-* Z3_COMMAND: The z3 command on this machine.
-* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
-* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
-* DATABASE: Information about the database.
-* LOGGING: Settings for logging.
-* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
-* VALID_TYPES: The variable types that are right now supported by SR.
------- Settings related to file under repair -------
-* TESTS_LIST: The path to a list of the tests that could be run on the file
-* TEST_SCRIPT: The path to a script that will run the test
-* COMPILE_SCRIPT: The path to a script that will compile the code
-* FAULTY_CODE: The path to the faulty code (a C file)
-* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
-* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
-automatically)
-* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
-* SOSREPAIR: If set to False it will only run SearchRepair features
-* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
-* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
-"""
-__author__ = 'Afsoon Afzal'
-
-import logging
-
-
-LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
-
-GENERATE_DB_PATH = '/experiment/src'
-
-Z3_COMMAND = '/opt/sosrepair/bin/z3'
-
-LARGEST_SNIPPET = 7
-SMALLEST_SNIPPET = 3
-
-DATABASE = {
-    'db_name': 'testdocker',
-    'user': 'docker',
-    'password': '1234'
-}
-
-LOGGING = {
-    'filename': 'logs/repair.log',
-    'level': logging.DEBUG
-}
-
-logging.basicConfig(**LOGGING)
-
-MAX_SUSPICIOUS_LINES = 10
-
-VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
-
-TESTS_LIST = "/experiment/tests-list.txt"
-TEST_SCRIPT = "/experiment/test.sh"
-TEST_SCRIPT_TYPE = "/bin/bash"
-COMPILE_SCRIPT = "/experiment/compile.sh"
-FAULTY_CODE = "/experiment/src/gzip.c"
-
-
-COMPILE_EXTRA_ARGS = [
-                    "-I/usr/include",
-]
-
-MAKE_OUTPUT = "/experiment/makeout"
-
-METHOD_RANGE = (1254, 1438)
-# IF SOS+
-# METHOD_RANGE = (1269,1270)
-
-SOSREPAIR = True
-
-NUMBER_OF_TIMES_RERUNNING_TESTS = 1
-EXCLUDE_SCANF = False
-
-BULK_RUN_PATH = ""

python/data/tests-list/gzip/gzip-bug-2009-10-09-1a085b1446-118a107f2d/test.sh

@@ -1,27 +0,0 @@
-#!/bin/bash
-TEST_ID=$1
-DIR=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
-
-
-run_test()
-{
-    cd $DIR/src
-        timeout 5 perl $DIR/gzip-run-tests.pl $1
-    RESULT=$?
-    if [ $RESULT = 0 ] ; then
-	echo "PASS"
-    else
-	echo "FAIL"
-    fi
-    cd ..
-    return 0
-}
-case $TEST_ID in
-    p1) run_test 1 && exit 0 ;; 
-    p2) run_test 3 && exit 0 ;; 
-    p3) run_test 4 && exit 0 ;; 
-    p4) run_test 7 && exit 0 ;; 
-    p5) run_test 9 && exit 0 ;; 
-    n1) run_test 8 && exit 0 ;; 
-esac
-exit 1

python/data/tests-list/gzip/gzip-bug-2009-10-09-1a085b1446-118a107f2d/tests-list.txt

@@ -1,6 +0,0 @@
-n1
-p1
-p2
-p3
-p4
-p5

python/data/tests-list/gzip/gzip-bug-2010-02-19-3eb6091d69-884ef6d16c/settings.py

@@ -1,80 +0,0 @@
-"""
-This file includes all the settings that could be modified for running SearchRepair/SOSRepair
-
-* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
-* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
- DB
-* Z3_COMMAND: The z3 command on this machine.
-* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
-* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
-* DATABASE: Information about the database.
-* LOGGING: Settings for logging.
-* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
-* VALID_TYPES: The variable types that are right now supported by SR.
------- Settings related to file under repair -------
-* TESTS_LIST: The path to a list of the tests that could be run on the file
-* TEST_SCRIPT: The path to a script that will run the test
-* COMPILE_SCRIPT: The path to a script that will compile the code
-* FAULTY_CODE: The path to the faulty code (a C file)
-* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
-* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
-automatically)
-* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
-* SOSREPAIR: If set to False it will only run SearchRepair features
-* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
-* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
-"""
-__author__ = 'Afsoon Afzal'
-
-import logging
-
-
-LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
-
-GENERATE_DB_PATH = '/experiment/src'
-
-Z3_COMMAND = '/opt/sosrepair/bin/z3'
-
-LARGEST_SNIPPET = 7
-SMALLEST_SNIPPET = 3
-
-DATABASE = {
-    'db_name': 'testdocker',
-    'user': 'docker',
-    'password': '1234'
-}
-
-LOGGING = {
-    'filename': 'logs/repair.log',
-    'level': logging.DEBUG
-}
-
-logging.basicConfig(**LOGGING)
-
-MAX_SUSPICIOUS_LINES = 10
-
-VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
-
-TESTS_LIST = "/experiment/tests-list.txt"
-TEST_SCRIPT = "/experiment/test.sh"
-TEST_SCRIPT_TYPE = "/bin/bash"
-COMPILE_SCRIPT = "/experiment/compile.sh"
-FAULTY_CODE = "/experiment/src/gzip.c"
-
-
-COMPILE_EXTRA_ARGS = [
-                    "-I/usr/include",
-]
-
-MAKE_OUTPUT = "/experiment/makeout"
-
-METHOD_RANGE = (409, 585)
-# IF SOS+
-# METHOD_RANGE = (546, 547)
-
-SOSREPAIR = True
-
-NUMBER_OF_TIMES_RERUNNING_TESTS = 1
-EXCLUDE_SCANF = False
-
-BULK_RUN_PATH = ""

python/data/tests-list/gzip/gzip-bug-2010-02-19-3eb6091d69-884ef6d16c/test.sh

@@ -1,30 +0,0 @@
-#!/bin/bash
-TEST_ID=$1
-DIR=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
-
-
-run_test()
-{
-    cd $DIR/src
-        timeout 5 perl $DIR/gzip-run-tests.pl $1
-    RESULT=$?
-    if [ $RESULT = 0 ] ; then
-	echo "PASS"
-    else
-	echo "FAIL"
-    fi
-    cd ..
-    return 0
-}
-case $TEST_ID in
-    p1) run_test 1 && exit 0 ;; 
-    p2) run_test 3 && exit 0 ;; 
-    p3) run_test 4 && exit 0 ;; 
-    p4) run_test 5 && exit 0 ;; 
-    p5) run_test 7 && exit 0 ;; 
-    p6) run_test 8 && exit 0 ;; 
-    p7) run_test 9 && exit 0 ;; 
-    p8) run_test 12 && exit 0 ;; 
-    n1) run_test 6 && exit 0 ;; 
-esac
-exit 1

python/data/tests-list/gzip/gzip-bug-2010-02-19-3eb6091d69-884ef6d16c/tests-list.txt

@@ -1,9 +0,0 @@
-n1
-p1
-p2
-p3
-p4
-p5
-p6
-p7
-p8

python/data/tests-list/gzip/makeout

@@ -1,79 +0,0 @@
-Making all in lib
-make[1]: Entering directory `/experiment/src/lib'
-  GEN      arg-nonnull.h
-  GEN      c++defs.h
-  GEN      configmake.h
-  GEN      warn-on-use.h
-  GEN      fcntl.h
-  GEN      stdio.h
-  GEN      string.h
-  GEN      sys/stat.h
-  GEN      sys/time.h
-  GEN      time.h
-  GEN      unistd.h
-  GEN      wchar.h
-  GEN      wctype.h
-make  all-recursive
-make[2]: Entering directory `/experiment/src/lib'
-make[3]: Entering directory `/experiment/src/lib'
-  GEN      charset.alias
-  GEN      ref-add.sed
-  GEN      ref-del.sed
-  CC       exitfail.o
-  CC       freadahead.o
-  CC       freading.o
-  CC       localcharset.o
-  CC       close-stream.o
-  CC       xalloc-die.o
-  CC       closein.o
-  CC       closeout.o
-  CC       creat-safer.o
-  CC       dup-safer.o
-  CC       fcntl.o
-  CC       fd-safer.o
-  CC       fflush.o
-  CC       fpurge.o
-  CC       fseeko.o
-  CC       gettime.o
-  CC       open-safer.o
-  CC       pipe-safer.o
-  CC       quotearg.o
-  CC       utimens.o
-  CC       xmalloc.o
-  CC       yesno.o
-  AR       libgzip.a
-make[3]: Leaving directory `/experiment/src/lib'
-make[2]: Leaving directory `/experiment/src/lib'
-make[1]: Leaving directory `/experiment/src/lib'
-Making all in doc
-make[1]: Entering directory `/experiment/src/doc'
-make[1]: Nothing to be done for `all'.
-make[1]: Leaving directory `/experiment/src/doc'
-make[1]: Entering directory `/experiment/src'
-  CC       bits.o
-  CC       crypt.o
-  CC       deflate.o
-  CC       gzip.o
-  CC       inflate.o
-  CC       lzw.o
-  CC       trees.o
-  CC       unlzh.o
-  CC       unlzw.o
-  CC       unpack.o
-  CC       unzip.o
-  CC       util.o
-  CC       zip.o
-  GEN      gunzip
-  GEN      gzexe
-  GEN      zcat
-  GEN      zcmp
-  GEN      zdiff
-  GEN      zegrep
-  GEN      zfgrep
-  GEN      zforce
-  GEN      zgrep
-  GEN      zless
-  GEN      zmore
-  GEN      znew
-  CCLD     gzip
-make[1]: Leaving directory `/experiment/src'

python/data/tests-list/gzip/test.sh

@@ -1,24 +0,0 @@
-#!/bin/bash
-TEST_ID=$1
-DIR=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
-
-
-run_test()
-{
-    cd $DIR/src
-        timeout 5 perl $DIR/gzip-run-tests.pl $1
-    RESULT=$?
-    if [ $RESULT = 0 ] ; then
-	echo "PASS"
-    else
-	echo "FAIL"
-    fi
-    cd ..
-    return 0
-}
-case $TEST_ID in
-    p1) run_test 1 && exit 0 ;; 
-    p2) run_test 4 && exit 0 ;; 
-    n1) run_test 3 && exit 0 ;; 
-esac
-exit 1

python/data/tests-list/libtiff/README.md

@@ -1,23 +0,0 @@
-## Running `libtiff` bugs
-
-After running the container you need to follow the following
-steps to prepare `SOSRepair` for running:
-
-1. Copy `makeout`, `compile.sh`, `test.sh` and `tests-list` to
-the container's `/experiment/`.
-2. Copy `settings.py` to the container's `/opt/sosrepair/sosrepair`.
-3. In the container, reconfigure the project with coverage flags:
-```
-cd /experiment/src
-./configure "CFLAGS=-fprofile-arcs -ftest-coverage" "CXXFLAGS=-fprofile-arcs -ftest-coverage" "LDFLAGS=-lgcov"
-make clean
-make
-```
-4. Run `/opt/sosrepair/prepare/setup.sh`.
-5. Set proper permissions by running `sudo chmod -R 777 /opt/sosrepair/sosrepair`.
-6. Setup environment variables:
-```
-export PYTHONPATH="/opt/sosrepair/bindings:${PYTHONPATH}"
-export CPATH=":/opt/sosrepair/include"
-export PATH="/opt/sosrepair/bin:$PATH"
-```

python/data/tests-list/libtiff/compile.sh

@@ -1,8 +0,0 @@
-#!/bin/bash
-DIR=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
-
-cd $DIR/src
-#make clean
-(make && exit 0)|| exit 1
-
-

python/data/tests-list/libtiff/copy.sh

@@ -1,10 +0,0 @@
-#!/bin/bash
-
-
-CONTAINER=$1
-BUG=$2
-
-docker cp compile.sh $CONTAINER:/experiment/
-docker cp $BUG/test.sh $CONTAINER:/experiment/
-docker cp $BUG/tests-list.txt $CONTAINER:/experiment/
-docker cp $BUG/settings.py $CONTAINER:/opt/sosrepair/sosrepair/

python/data/tests-list/libtiff/libtiff-bug-2005-12-21-3b848a7-3edb9cd/settings.py

@@ -1,83 +0,0 @@
-"""
-This file includes all the settings that could be modified for running SearchRepair/SOSRepair
-
-* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
-* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
- DB
-* Z3_COMMAND: The z3 command on this machine.
-* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
-* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
-* DATABASE: Information about the database.
-* LOGGING: Settings for logging.
-* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
-* VALID_TYPES: The variable types that are right now supported by SR.
------- Settings related to file under repair -------
-* TESTS_LIST: The path to a list of the tests that could be run on the file
-* TEST_SCRIPT: The path to a script that will run the test
-* COMPILE_SCRIPT: The path to a script that will compile the code
-* FAULTY_CODE: The path to the faulty code (a C file)
-* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
-* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
-automatically)
-* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
-* SOSREPAIR: If set to False it will only run SearchRepair features
-* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
-* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
-"""
-__author__ = 'Afsoon Afzal'
-
-import logging
-
-
-LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
-
-GENERATE_DB_PATH = '/experiment/src'
-
-Z3_COMMAND = '/opt/sosrepair/bin/z3'
-
-LARGEST_SNIPPET = 7
-SMALLEST_SNIPPET = 3
-
-DATABASE = {
-    'db_name': 'testdocker',
-    'user': 'docker',
-    'password': '1234'
-}
-
-LOGGING = {
-    'filename': 'logs/repair.log',
-    'level': logging.DEBUG
-}
-
-logging.basicConfig(**LOGGING)
-
-MAX_SUSPICIOUS_LINES = 10
-
-VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
-
-TESTS_LIST = "/experiment/tests-list.txt"
-TEST_SCRIPT = "/experiment/test.sh"
-TEST_SCRIPT_TYPE = "/bin/bash"
-COMPILE_SCRIPT = "/experiment/compile.sh"
-FAULTY_CODE = "/experiment/src/libtiff/tif_dirread.c"
-
-
-COMPILE_EXTRA_ARGS = [
-                    "-I/experiment/src",
-                    "-I/usr/include",
-]
-
-MAKE_OUTPUT = "/experiment/makeout"
-
-METHOD_RANGE = (72, 683)
-# IF SOS+
-# METHOD_RANGE = (589, 590)
-
-SOSREPAIR = True
-
-NUMBER_OF_TIMES_RERUNNING_TESTS = 1
-EXCLUDE_SCANF = False
-
-BULK_RUN_PATH = ""
-
-GCOV_OBJECTS = "/experiment/src/libtiff/.libs"

python/data/tests-list/libtiff/libtiff-bug-2005-12-21-3b848a7-3edb9cd/test.sh

@@ -1,63 +0,0 @@
-#!/bin/bash
-bugrev=3b848a7
-dir=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
-
-run_test()
-{
-    cd $dir/src
-    /usr/bin/perl $dir/libtiff-run-tests.pl $1
-    RESULT=$?
-    
-    cd ..
-    return 0
-}
-
-run_test1()
-{
-    pushd $dir/src/test > /dev/null
-    test_script=$(sed "$1q;d" $dir/TESTS)
-    test_script_log="$test_script.log"
-    rm -f $test_script_log
-    timeout $timeout make $test_script_log
-    #timeout $timeout ./$test_script
-    return $?
-}
-
-case $1 in
-    p1) run_test 2 && exit 0 ;; 
-    p2) run_test 3 && exit 0 ;; 
-    p3) run_test 4 && exit 0 ;; 
-    p4) run_test 5 && exit 0 ;; 
-    p5) run_test 6 && exit 0 ;; 
-    p6) run_test 7 && exit 0 ;; 
-    p7) run_test 8 && exit 0 ;; 
-    p8) run_test 10 && exit 0 ;; 
-    p9) run_test 11 && exit 0 ;; 
-    p10) run_test 12 && exit 0 ;; 
-    p11) run_test 13 && exit 0 ;; 
-    p12) run_test 14 && exit 0 ;; 
-    p13) run_test 15 && exit 0 ;; 
-    p14) run_test 16 && exit 0 ;; 
-    p15) run_test 17 && exit 0 ;; 
-    p16) run_test 19 && exit 0 ;; 
-    p17) run_test 20 && exit 0 ;; 
-    p18) run_test 21 && exit 0 ;; 
-    p19) run_test 24 && exit 0 ;; 
-    p20) run_test 25 && exit 0 ;; 
-    p21) run_test 26 && exit 0 ;; 
-    p22) run_test 27 && exit 0 ;; 
-    p23) run_test 28 && exit 0 ;; 
-    p24) run_test 69 && exit 0 ;; 
-    p25) run_test 70 && exit 0 ;; 
-    p26) run_test 71 && exit 0 ;; 
-    p27) run_test 72 && exit 0 ;; 
-    p28) run_test 73 && exit 0 ;; 
-    p29) run_test 74 && exit 0 ;; 
-    p30) run_test 75 && exit 0 ;; 
-    p31) run_test 76 && exit 0 ;; 
-    p32) run_test 77 && exit 0 ;; 
-    p33) run_test 78 && exit 0 ;; 
-    n1) run_test 22 && exit 0 ;; 
-    n2) run_test 23 && exit 0 ;; 
-esac
-exit 1

python/data/tests-list/libtiff/libtiff-bug-2005-12-21-3b848a7-3edb9cd/tests-list.txt

@@ -1,34 +0,0 @@
-n1
-n2
-p1
-p2
-p3
-p5
-p6
-p7
-p8
-p9
-p10
-p11
-p12
-p13
-p14
-p15
-p16
-p17
-p18
-p19
-p20
-p21
-p22
-p23
-p24
-p25
-p26
-p27
-p28
-p29
-p30
-p31
-p32
-p33

python/data/tests-list/libtiff/libtiff-bug-2006-02-23-b2ce5d8-207c78a/settings.py

@@ -1,83 +0,0 @@
-"""
-This file includes all the settings that could be modified for running SearchRepair/SOSRepair
-
-* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
-* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
- DB
-* Z3_COMMAND: The z3 command on this machine.
-* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
-* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
-* DATABASE: Information about the database.
-* LOGGING: Settings for logging.
-* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
-* VALID_TYPES: The variable types that are right now supported by SR.
------- Settings related to file under repair -------
-* TESTS_LIST: The path to a list of the tests that could be run on the file
-* TEST_SCRIPT: The path to a script that will run the test
-* COMPILE_SCRIPT: The path to a script that will compile the code
-* FAULTY_CODE: The path to the faulty code (a C file)
-* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
-* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
-automatically)
-* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
-* SOSREPAIR: If set to False it will only run SearchRepair features
-* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
-* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
-"""
-__author__ = 'Afsoon Afzal'
-
-import logging
-
-
-LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
-
-GENERATE_DB_PATH = '/experiment/src'
-
-Z3_COMMAND = '/opt/sosrepair/bin/z3'
-
-LARGEST_SNIPPET = 7
-SMALLEST_SNIPPET = 3
-
-DATABASE = {
-    'db_name': 'testdocker',
-    'user': 'docker',
-    'password': '1234'
-}
-
-LOGGING = {
-    'filename': 'logs/repair.log',
-    'level': logging.DEBUG
-}
-
-logging.basicConfig(**LOGGING)
-
-MAX_SUSPICIOUS_LINES = 10
-
-VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
-
-TESTS_LIST = "/experiment/tests-list.txt"
-TEST_SCRIPT = "/experiment/test.sh"
-TEST_SCRIPT_TYPE = "/bin/bash"
-COMPILE_SCRIPT = "/experiment/compile.sh"
-FAULTY_CODE = "/experiment/src/libtiff/tif_dirwrite.c"
-
-
-COMPILE_EXTRA_ARGS = [
-                    "-I/experiment/src",
-                    "-I/usr/include",
-]
-
-MAKE_OUTPUT = "/experiment/makeout"
-
-METHOD_RANGE = (83, 403)
-# IF SOS+
-# METHOD_RANGE = (338, 339)
-
-SOSREPAIR = True
-
-NUMBER_OF_TIMES_RERUNNING_TESTS = 1
-EXCLUDE_SCANF = False
-
-BULK_RUN_PATH = ""
-
-GCOV_OBJECTS = "/experiment/src/libtiff/.libs"

python/data/tests-list/libtiff/libtiff-bug-2006-02-23-b2ce5d8-207c78a/test.sh

@@ -1,52 +0,0 @@
-#!/bin/bash
-bugrev=b2ce5d8
-dir=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
-
-
-run_test()
-{
-    cd $dir/src
-    /usr/bin/perl $dir/libtiff-run-tests.pl $1
-    RESULT=$?
-    
-    cd ..
-    return 0
-}
-case $1 in
-    p1) run_test 2 && exit 0 ;; 
-    p2) run_test 4 && exit 0 ;; 
-    p3) run_test 5 && exit 0 ;; 
-    p4) run_test 6 && exit 0 ;; 
-    p5) run_test 7 && exit 0 ;; 
-    p6) run_test 8 && exit 0 ;; 
-    p7) run_test 10 && exit 0 ;; 
-    p8) run_test 11 && exit 0 ;; 
-    p9) run_test 12 && exit 0 ;; 
-    p10) run_test 13 && exit 0 ;; 
-    p11) run_test 14 && exit 0 ;; 
-    p12) run_test 15 && exit 0 ;; 
-    p13) run_test 16 && exit 0 ;; 
-    p14) run_test 17 && exit 0 ;; 
-    p15) run_test 19 && exit 0 ;; 
-    p16) run_test 20 && exit 0 ;; 
-    p17) run_test 21 && exit 0 ;; 
-    p18) run_test 22 && exit 0 ;; 
-    p19) run_test 23 && exit 0 ;; 
-    p20) run_test 24 && exit 0 ;; 
-    p21) run_test 25 && exit 0 ;; 
-    p22) run_test 26 && exit 0 ;; 
-    p23) run_test 27 && exit 0 ;; 
-    p24) run_test 28 && exit 0 ;; 
-    p25) run_test 69 && exit 0 ;; 
-    p26) run_test 70 && exit 0 ;; 
-    p27) run_test 71 && exit 0 ;; 
-    p28) run_test 72 && exit 0 ;; 
-    p29) run_test 73 && exit 0 ;; 
-    p30) run_test 74 && exit 0 ;; 
-    p31) run_test 75 && exit 0 ;; 
-    p32) run_test 76 && exit 0 ;; 
-    p33) run_test 77 && exit 0 ;; 
-    p34) run_test 78 && exit 0 ;; 
-    n1) run_test 3 && exit 0 ;; 
-esac
-exit 1

python/data/tests-list/libtiff/libtiff-bug-2006-02-23-b2ce5d8-207c78a/tests-list.txt

@@ -1,34 +0,0 @@
-n1
-p1
-p2
-p4
-p5
-p6
-p7
-p8
-p9
-p10
-p11
-p12
-p13
-p14
-p15
-p16
-p17
-p18
-p19
-p20
-p21
-p22
-p23
-p24
-p25
-p26
-p27
-p28
-p29
-p30
-p31
-p32
-p33
-p34

python/data/tests-list/libtiff/libtiff-bug-2006-03-03-a72cf60-0a36d7f/settings.py

@@ -1,83 +0,0 @@
-"""
-This file includes all the settings that could be modified for running SearchRepair/SOSRepair
-
-* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
-* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
- DB
-* Z3_COMMAND: The z3 command on this machine.
-* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
-* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
-* DATABASE: Information about the database.
-* LOGGING: Settings for logging.
-* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
-* VALID_TYPES: The variable types that are right now supported by SR.
------- Settings related to file under repair -------
-* TESTS_LIST: The path to a list of the tests that could be run on the file
-* TEST_SCRIPT: The path to a script that will run the test
-* COMPILE_SCRIPT: The path to a script that will compile the code
-* FAULTY_CODE: The path to the faulty code (a C file)
-* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
-* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
-automatically)
-* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
-* SOSREPAIR: If set to False it will only run SearchRepair features
-* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
-* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
-"""
-__author__ = 'Afsoon Afzal'
-
-import logging
-
-
-LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
-
-GENERATE_DB_PATH = '/experiment/src'
-
-Z3_COMMAND = '/opt/sosrepair/bin/z3'
-
-LARGEST_SNIPPET = 7
-SMALLEST_SNIPPET = 3
-
-DATABASE = {
-    'db_name': 'testdocker',
-    'user': 'docker',
-    'password': '1234'
-}
-
-LOGGING = {
-    'filename': 'logs/repair.log',
-    'level': logging.DEBUG
-}
-
-logging.basicConfig(**LOGGING)
-
-MAX_SUSPICIOUS_LINES = 10
-
-VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
-
-TESTS_LIST = "/experiment/tests-list.txt"
-TEST_SCRIPT = "/experiment/test.sh"
-TEST_SCRIPT_TYPE = "/bin/bash"
-COMPILE_SCRIPT = "/experiment/compile.sh"
-FAULTY_CODE = "/experiment/src/libtiff/tif_dirread.c"
-
-
-COMPILE_EXTRA_ARGS = [
-                    "-I/experiment/src",
-                    "-I/usr/include",
-]
-
-MAKE_OUTPUT = "/experiment/makeout"
-
-METHOD_RANGE = (972, 1018)
-# IF SOS+
-# METHOD_RANGE = (976, 977)
-
-SOSREPAIR = True
-
-NUMBER_OF_TIMES_RERUNNING_TESTS = 1
-EXCLUDE_SCANF = False
-
-BULK_RUN_PATH = ""
-
-GCOV_OBJECTS = "/experiment/src/libtiff/.libs"

python/data/tests-list/libtiff/libtiff-bug-2006-03-03-a72cf60-0a36d7f/test.sh

@@ -1,53 +0,0 @@
-#!/bin/bash
-bugrev=a72cf60
-dir=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
-
-
-run_test()
-{
-    cd $dir/src
-    /usr/bin/perl $dir/libtiff-run-tests.pl $1
-    RESULT=$?
-
-    cd ..
-    return 0
-}
-case $1 in
-    p1) run_test 5 && exit 0 ;; 
-    p2) run_test 6 && exit 0 ;; 
-    p3) run_test 7 && exit 0 ;; 
-    p4) run_test 8 && exit 0 ;; 
-    p5) run_test 9 && exit 0 ;; 
-    p6) run_test 10 && exit 0 ;; 
-    p7) run_test 11 && exit 0 ;; 
-    p8) run_test 12 && exit 0 ;; 
-    p9) run_test 13 && exit 0 ;; 
-    p10) run_test 14 && exit 0 ;; 
-    p11) run_test 15 && exit 0 ;; 
-    p12) run_test 16 && exit 0 ;; 
-    p13) run_test 17 && exit 0 ;; 
-    p14) run_test 19 && exit 0 ;; 
-    p15) run_test 20 && exit 0 ;; 
-    p16) run_test 21 && exit 0 ;; 
-    p17) run_test 24 && exit 0 ;; 
-    p18) run_test 25 && exit 0 ;; 
-    p19) run_test 26 && exit 0 ;; 
-    p20) run_test 27 && exit 0 ;; 
-    p21) run_test 28 && exit 0 ;; 
-    p22) run_test 69 && exit 0 ;; 
-    p23) run_test 70 && exit 0 ;; 
-    p24) run_test 71 && exit 0 ;; 
-    p25) run_test 72 && exit 0 ;; 
-    p26) run_test 73 && exit 0 ;; 
-    p27) run_test 74 && exit 0 ;; 
-    p28) run_test 75 && exit 0 ;; 
-    p29) run_test 76 && exit 0 ;; 
-    p30) run_test 77 && exit 0 ;; 
-    p31) run_test 78 && exit 0 ;; 
-    n1) run_test 2 && exit 0 ;; 
-    n2) run_test 3 && exit 0 ;; 
-    n3) run_test 4 && exit 0 ;; 
-    n4) run_test 22 && exit 0 ;; 
-    n5) run_test 23 && exit 0 ;; 
-esac
-exit 1

python/data/tests-list/libtiff/libtiff-bug-2006-03-03-a72cf60-0a36d7f/tests-list.txt

@@ -1,35 +0,0 @@
-n1
-n2
-n3
-n4
-n5
-p2
-p3
-p4
-p5
-p6
-p7
-p8
-p9
-p10
-p11
-p12
-p13
-p14
-p15
-p16
-p17
-p18
-p19
-p20
-p21
-p22
-p23
-p24
-p25
-p26
-p27
-p28
-p29
-p30
-p31

python/data/tests-list/libtiff/libtiff-bug-2006-03-03-eec4c06-ee65c74/libtiff-bug-2006-03-03-a72cf60-0a36d7f/settings.py

@@ -1,79 +0,0 @@
-"""
-This file includes all the settings that could be modified for running SearchRepair/SOSRepair
-
-* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
-* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
- DB
-* Z3_COMMAND: The z3 command on this machine.
-* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
-* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
-* DATABASE: Information about the database.
-* LOGGING: Settings for logging.
-* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
-* VALID_TYPES: The variable types that are right now supported by SR.
------- Settings related to file under repair -------
-* TESTS_LIST: The path to a list of the tests that could be run on the file
-* TEST_SCRIPT: The path to a script that will run the test
-* COMPILE_SCRIPT: The path to a script that will compile the code
-* FAULTY_CODE: The path to the faulty code (a C file)
-* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
-* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
-automatically)
-* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
-* SOSREPAIR: If set to False it will only run SearchRepair features
-* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
-* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
-"""
-__author__ = 'Afsoon Afzal'
-
-import logging
-
-
-LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
-
-GENERATE_DB_PATH = '/experiment/src'
-
-Z3_COMMAND = '/opt/sosrepair/bin/z3'
-
-LARGEST_SNIPPET = 7
-SMALLEST_SNIPPET = 3
-
-DATABASE = {
-    'db_name': 'testdocker',
-    'user': 'docker',
-    'password': '1234'
-}
-
-LOGGING = {
-    'filename': 'logs/repair.log',
-    'level': logging.DEBUG
-}
-
-logging.basicConfig(**LOGGING)
-
-MAX_SUSPICIOUS_LINES = 10
-
-VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
-
-TESTS_LIST = "/experiment/tests-list.txt"
-TEST_SCRIPT = "/experiment/test.sh"
-TEST_SCRIPT_TYPE = "/bin/bash"
-COMPILE_SCRIPT = "/experiment/compile.sh"
-FAULTY_CODE = "/experiment/src/libtiff/tif_dirread.c"
-
-
-COMPILE_EXTRA_ARGS = [
-                    "-I/experiment/src",
-                    "-I/usr/include",
-]
-
-MAKE_OUTPUT = "/experiment/makeout"
-
-METHOD_RANGE = (972, 1018)
-
-SOSREPAIR = True
-
-NUMBER_OF_TIMES_RERUNNING_TESTS = 1
-EXCLUDE_SCANF = False
-
-BULK_RUN_PATH = ""

python/data/tests-list/libtiff/libtiff-bug-2006-03-03-eec4c06-ee65c74/libtiff-bug-2006-03-03-a72cf60-0a36d7f/test.sh

@@ -1,63 +0,0 @@
-#!/bin/bash
-bugrev=a72cf60
-dir=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
-
-#Check if coverage is being run. If so, don't use time limit.
-if [ `basename $1` = "coverage" ] ; then
-    cov=0
-else
-    cov=1
-fi
-
-run_test()
-{
-    cd $dir/src
-    if [ $cov -eq 0 ] ; then
-        /usr/bin/perl $dir/libtiff-run-tests.pl $1
-    else
-        $dir/limit /usr/bin/perl $dir/libtiff-run-tests.pl $1
-    fi
-    RESULT=$?
-
-    cd ..
-    return 0
-}
-case $2 in
-    p1) run_test 5 && exit 0 ;; 
-    p2) run_test 6 && exit 0 ;; 
-    p3) run_test 7 && exit 0 ;; 
-    p4) run_test 8 && exit 0 ;; 
-    p5) run_test 9 && exit 0 ;; 
-    p6) run_test 10 && exit 0 ;; 
-    p7) run_test 11 && exit 0 ;; 
-    p8) run_test 12 && exit 0 ;; 
-    p9) run_test 13 && exit 0 ;; 
-    p10) run_test 14 && exit 0 ;; 
-    p11) run_test 15 && exit 0 ;; 
-    p12) run_test 16 && exit 0 ;; 
-    p13) run_test 17 && exit 0 ;; 
-    p14) run_test 19 && exit 0 ;; 
-    p15) run_test 20 && exit 0 ;; 
-    p16) run_test 21 && exit 0 ;; 
-    p17) run_test 24 && exit 0 ;; 
-    p18) run_test 25 && exit 0 ;; 
-    p19) run_test 26 && exit 0 ;; 
-    p20) run_test 27 && exit 0 ;; 
-    p21) run_test 28 && exit 0 ;; 
-    p22) run_test 69 && exit 0 ;; 
-    p23) run_test 70 && exit 0 ;; 
-    p24) run_test 71 && exit 0 ;; 
-    p25) run_test 72 && exit 0 ;; 
-    p26) run_test 73 && exit 0 ;; 
-    p27) run_test 74 && exit 0 ;; 
-    p28) run_test 75 && exit 0 ;; 
-    p29) run_test 76 && exit 0 ;; 
-    p30) run_test 77 && exit 0 ;; 
-    p31) run_test 78 && exit 0 ;; 
-    n1) run_test 2 && exit 0 ;; 
-    n2) run_test 3 && exit 0 ;; 
-    n3) run_test 4 && exit 0 ;; 
-    n4) run_test 22 && exit 0 ;; 
-    n5) run_test 23 && exit 0 ;; 
-esac
-exit 1

python/data/tests-list/libtiff/libtiff-bug-2006-03-03-eec4c06-ee65c74/libtiff-bug-2006-03-03-a72cf60-0a36d7f/tests-list.txt

@@ -1,35 +0,0 @@
-n1
-n2
-n3
-n4
-n5
-p2
-p3
-p4
-p5
-p6
-p7
-p8
-p9
-p10
-p11
-p12
-p13
-p14
-p15
-p16
-p17
-p18
-p19
-p20
-p21
-p22
-p23
-p24
-p25
-p26
-p27
-p28
-p29
-p30
-p31

python/data/tests-list/libtiff/libtiff-bug-2006-03-03-eec4c06-ee65c74/settings.py

@@ -1,83 +0,0 @@
-"""
-This file includes all the settings that could be modified for running SearchRepair/SOSRepair
-
-* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
-* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
- DB
-* Z3_COMMAND: The z3 command on this machine.
-* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
-* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
-* DATABASE: Information about the database.
-* LOGGING: Settings for logging.
-* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
-* VALID_TYPES: The variable types that are right now supported by SR.
------- Settings related to file under repair -------
-* TESTS_LIST: The path to a list of the tests that could be run on the file
-* TEST_SCRIPT: The path to a script that will run the test
-* COMPILE_SCRIPT: The path to a script that will compile the code
-* FAULTY_CODE: The path to the faulty code (a C file)
-* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
-* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
-automatically)
-* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
-* SOSREPAIR: If set to False it will only run SearchRepair features
-* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
-* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
-"""
-__author__ = 'Afsoon Afzal'
-
-import logging
-
-
-LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
-
-GENERATE_DB_PATH = '/experiment/src'
-
-Z3_COMMAND = '/opt/sosrepair/bin/z3'
-
-LARGEST_SNIPPET = 7
-SMALLEST_SNIPPET = 3
-
-DATABASE = {
-    'db_name': 'testdocker',
-    'user': 'docker',
-    'password': '1234'
-}
-
-LOGGING = {
-    'filename': 'logs/repair.log',
-    'level': logging.DEBUG
-}
-
-logging.basicConfig(**LOGGING)
-
-MAX_SUSPICIOUS_LINES = 10
-
-VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
-
-TESTS_LIST = "/experiment/tests-list.txt"
-TEST_SCRIPT = "/experiment/test.sh"
-TEST_SCRIPT_TYPE = "/bin/bash"
-COMPILE_SCRIPT = "/experiment/compile.sh"
-FAULTY_CODE = "/experiment/src/libtiff/tif_dirread.c"
-
-
-COMPILE_EXTRA_ARGS = [
-                    "-I/experiment/src",
-                    "-I/usr/include",
-]
-
-MAKE_OUTPUT = "/experiment/makeout"
-
-METHOD_RANGE = (972, 1018)
-# IF SOS+
-# METHOD_RANGE = (976, 977)
-
-SOSREPAIR = True
-
-NUMBER_OF_TIMES_RERUNNING_TESTS = 1
-EXCLUDE_SCANF = False
-
-BULK_RUN_PATH = ""
-
-GCOV_OBJECTS = "/experiment/src/libtiff/.libs"

python/data/tests-list/libtiff/libtiff-bug-2006-03-03-eec4c06-ee65c74/test.sh

@@ -1,55 +0,0 @@
-#!/bin/bash
-bugrev=eec4c06
-
-dir=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
-
-
-run_test()
-{
-    cd $dir/src
-    /usr/bin/perl $dir/libtiff-run-tests.pl $1
-    RESULT=$?
-
-    cd ..
-    return 0
-}
-
-case $1 in
-    p1) run_test 5 && exit 0 ;; 
-    p2) run_test 6 && exit 0 ;; 
-    p3) run_test 7 && exit 0 ;; 
-    p4) run_test 8 && exit 0 ;; 
-    p5) run_test 9 && exit 0 ;; 
-    p6) run_test 10 && exit 0 ;; 
-    p7) run_test 11 && exit 0 ;; 
-    p8) run_test 12 && exit 0 ;; 
-    p9) run_test 13 && exit 0 ;; 
-    p10) run_test 14 && exit 0 ;; 
-    p11) run_test 15 && exit 0 ;; 
-    p12) run_test 16 && exit 0 ;; 
-    p13) run_test 17 && exit 0 ;; 
-    p14) run_test 19 && exit 0 ;; 
-    p15) run_test 20 && exit 0 ;; 
-    p16) run_test 21 && exit 0 ;; 
-    p17) run_test 24 && exit 0 ;; 
-    p18) run_test 25 && exit 0 ;; 
-    p19) run_test 26 && exit 0 ;; 
-    p20) run_test 27 && exit 0 ;; 
-    p21) run_test 28 && exit 0 ;; 
-    p22) run_test 69 && exit 0 ;; 
-    p23) run_test 70 && exit 0 ;; 
-    p24) run_test 71 && exit 0 ;; 
-    p25) run_test 72 && exit 0 ;; 
-    p26) run_test 73 && exit 0 ;; 
-    p27) run_test 74 && exit 0 ;; 
-    p28) run_test 75 && exit 0 ;; 
-    p29) run_test 76 && exit 0 ;; 
-    p30) run_test 77 && exit 0 ;; 
-    p31) run_test 78 && exit 0 ;; 
-    n1) run_test 2 && exit 0 ;; 
-    n2) run_test 3 && exit 0 ;; 
-    n3) run_test 4 && exit 0 ;; 
-    n4) run_test 22 && exit 0 ;; 
-    n5) run_test 23 && exit 0 ;; 
-esac
-exit 1

python/data/tests-list/libtiff/libtiff-bug-2006-03-03-eec4c06-ee65c74/tests-list.txt

@@ -1,35 +0,0 @@
-n1
-n2
-n3
-n4
-n5
-p2
-p3
-p4
-p5
-p6
-p7
-p8
-p9
-p10
-p11
-p12
-p13
-p14
-p15
-p16
-p17
-p18
-p19
-p20
-p21
-p22
-p23
-p24
-p25
-p26
-p27
-p28
-p29
-p30
-p31

python/data/tests-list/libtiff/libtiff-bug-2007-07-13-09e8220-f2d989d/notes.md

@@ -1,3 +0,0 @@
-To allow SOS+ to find the perfect patch you need to run it with
-flag `--all_patches`. Also limit the considered variables for
-insertion to `size` and `stripsize`.

python/data/tests-list/libtiff/libtiff-bug-2007-07-13-09e8220-f2d989d/settings.py

@@ -1,83 +0,0 @@
-"""
-This file includes all the settings that could be modified for running SearchRepair/SOSRepair
-
-* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
-* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
- DB
-* Z3_COMMAND: The z3 command on this machine.
-* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
-* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
-* DATABASE: Information about the database.
-* LOGGING: Settings for logging.
-* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
-* VALID_TYPES: The variable types that are right now supported by SR.
------- Settings related to file under repair -------
-* TESTS_LIST: The path to a list of the tests that could be run on the file
-* TEST_SCRIPT: The path to a script that will run the test
-* COMPILE_SCRIPT: The path to a script that will compile the code
-* FAULTY_CODE: The path to the faulty code (a C file)
-* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
-* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
-automatically)
-* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
-* SOSREPAIR: If set to False it will only run SearchRepair features
-* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
-* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
-"""
-__author__ = 'Afsoon Afzal'
-
-import logging
-
-
-LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
-
-GENERATE_DB_PATH = '/experiment/src'
-
-Z3_COMMAND = '/opt/sosrepair/bin/z3'
-
-LARGEST_SNIPPET = 7
-SMALLEST_SNIPPET = 3
-
-DATABASE = {
-    'db_name': 'testdocker',
-    'user': 'docker',
-    'password': '1234'
-}
-
-LOGGING = {
-    'filename': 'logs/repair.log',
-    'level': logging.DEBUG
-}
-
-logging.basicConfig(**LOGGING)
-
-MAX_SUSPICIOUS_LINES = 10
-
-VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
-
-TESTS_LIST = "/experiment/tests-list.txt"
-TEST_SCRIPT = "/experiment/test.sh"
-TEST_SCRIPT_TYPE = "/bin/bash"
-COMPILE_SCRIPT = "/experiment/compile.sh"
-FAULTY_CODE = "/experiment/src/libtiff/tif_read.c"
-
-
-COMPILE_EXTRA_ARGS = [
-                    "-I/experiment/src",
-                    "-I/usr/include",
-]
-
-MAKE_OUTPUT = "/experiment/makeout"
-
-METHOD_RANGE = (126, 168)
-# IF SOS+
-# METHOD_RANGE = (164, 165)
-
-SOSREPAIR = True
-
-NUMBER_OF_TIMES_RERUNNING_TESTS = 1
-EXCLUDE_SCANF = False
-
-BULK_RUN_PATH = ""
-
-GCOV_OBJECTS = "/experiment/src/libtiff/.libs"

python/data/tests-list/libtiff/libtiff-bug-2007-07-13-09e8220-f2d989d/test.sh

@@ -1,78 +0,0 @@
-#!/bin/bash
-bugrev=09e8220
-dir=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
-
-
-run_test()
-{
-    cd $dir/src
-    /usr/bin/perl $dir/libtiff-run-tests.pl $1
-    RESULT=$?
-
-    cd ..
-    return 0
-}
-case $1 in
-    p1) run_test 1 && exit 0 ;; 
-    p2) run_test 2 && exit 0 ;; 
-    p3) run_test 5 && exit 0 ;; 
-    p4) run_test 6 && exit 0 ;; 
-    p5) run_test 7 && exit 0 ;; 
-    p6) run_test 8 && exit 0 ;; 
-    p7) run_test 9 && exit 0 ;; 
-    p8) run_test 10 && exit 0 ;; 
-    p9) run_test 11 && exit 0 ;; 
-    p10) run_test 12 && exit 0 ;; 
-    p11) run_test 13 && exit 0 ;; 
-    p12) run_test 14 && exit 0 ;; 
-    p13) run_test 15 && exit 0 ;; 
-    p14) run_test 16 && exit 0 ;; 
-    p15) run_test 17 && exit 0 ;; 
-    p16) run_test 20 && exit 0 ;; 
-    p17) run_test 21 && exit 0 ;; 
-    p18) run_test 22 && exit 0 ;; 
-    p19) run_test 24 && exit 0 ;; 
-    p20) run_test 25 && exit 0 ;; 
-    p21) run_test 26 && exit 0 ;; 
-    p22) run_test 27 && exit 0 ;; 
-    p23) run_test 28 && exit 0 ;; 
-    p24) run_test 39 && exit 0 ;; 
-    p25) run_test 40 && exit 0 ;; 
-    p26) run_test 41 && exit 0 ;; 
-    p27) run_test 43 && exit 0 ;; 
-    p28) run_test 44 && exit 0 ;; 
-    p29) run_test 45 && exit 0 ;; 
-    p30) run_test 46 && exit 0 ;; 
-    p31) run_test 47 && exit 0 ;; 
-    p32) run_test 48 && exit 0 ;; 
-    p33) run_test 49 && exit 0 ;; 
-    p34) run_test 50 && exit 0 ;; 
-    p35) run_test 51 && exit 0 ;; 
-    p36) run_test 53 && exit 0 ;; 
-    p37) run_test 54 && exit 0 ;; 
-    p38) run_test 55 && exit 0 ;; 
-    p39) run_test 56 && exit 0 ;; 
-    p40) run_test 57 && exit 0 ;; 
-    p41) run_test 58 && exit 0 ;; 
-    p42) run_test 59 && exit 0 ;; 
-    p43) run_test 60 && exit 0 ;; 
-    p44) run_test 61 && exit 0 ;; 
-    p45) run_test 63 && exit 0 ;; 
-    p46) run_test 64 && exit 0 ;; 
-    p47) run_test 65 && exit 0 ;; 
-    p48) run_test 66 && exit 0 ;; 
-    p49) run_test 67 && exit 0 ;; 
-    p50) run_test 68 && exit 0 ;; 
-    p51) run_test 69 && exit 0 ;; 
-    p52) run_test 70 && exit 0 ;; 
-    p53) run_test 71 && exit 0 ;; 
-    p54) run_test 72 && exit 0 ;; 
-    p55) run_test 73 && exit 0 ;; 
-    p56) run_test 74 && exit 0 ;; 
-    p57) run_test 75 && exit 0 ;; 
-    p58) run_test 76 && exit 0 ;; 
-    p59) run_test 77 && exit 0 ;; 
-    p60) run_test 78 && exit 0 ;; 
-    n1) run_test 4 && exit 0 ;; 
-esac
-exit 1

python/data/tests-list/libtiff/libtiff-bug-2007-07-13-09e8220-f2d989d/tests-list.txt

@@ -1,60 +0,0 @@
-n1
-p1
-p2
-p4
-p5
-p6
-p7
-p8
-p9
-p10
-p11
-p12
-p13
-p14
-p15
-p16
-p17
-p18
-p19
-p20
-p21
-p22
-p23
-p24
-p25
-p26
-p27
-p28
-p29
-p30
-p31
-p32
-p33
-p34
-p35
-p36
-p37
-p38
-p39
-p40
-p41
-p42
-p43
-p44
-p45
-p46
-p47
-p48
-p49
-p50
-p51
-p52
-p53
-p54
-p55
-p56
-p57
-p58
-p59
-p60

python/data/tests-list/libtiff/libtiff-bug-2007-11-02-371336d-865f7b2/settings.py

@@ -1,83 +0,0 @@
-"""
-This file includes all the settings that could be modified for running SearchRepair/SOSRepair
-
-* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
-* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
- DB
-* Z3_COMMAND: The z3 command on this machine.
-* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
-* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
-* DATABASE: Information about the database.
-* LOGGING: Settings for logging.
-* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
-* VALID_TYPES: The variable types that are right now supported by SR.
------- Settings related to file under repair -------
-* TESTS_LIST: The path to a list of the tests that could be run on the file
-* TEST_SCRIPT: The path to a script that will run the test
-* COMPILE_SCRIPT: The path to a script that will compile the code
-* FAULTY_CODE: The path to the faulty code (a C file)
-* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
-* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
-automatically)
-* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
-* SOSREPAIR: If set to False it will only run SearchRepair features
-* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
-* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
-"""
-__author__ = 'Afsoon Afzal'
-
-import logging
-
-
-LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
-
-GENERATE_DB_PATH = '/experiment/src'
-
-Z3_COMMAND = '/opt/sosrepair/bin/z3'
-
-LARGEST_SNIPPET = 7
-SMALLEST_SNIPPET = 3
-
-DATABASE = {
-    'db_name': 'testdocker',
-    'user': 'docker',
-    'password': '1234'
-}
-
-LOGGING = {
-    'filename': 'logs/repair.log',
-    'level': logging.DEBUG
-}
-
-logging.basicConfig(**LOGGING)
-
-MAX_SUSPICIOUS_LINES = 10
-
-VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
-
-TESTS_LIST = "/experiment/tests-list.txt"
-TEST_SCRIPT = "/experiment/test.sh"
-TEST_SCRIPT_TYPE = "/bin/bash"
-COMPILE_SCRIPT = "/experiment/compile.sh"
-FAULTY_CODE = "/experiment/src/libtiff/tif_dirwrite.c"
-
-
-COMPILE_EXTRA_ARGS = [
-                    "-I/experiment/src",
-                    "-I/usr/include",
-]
-
-MAKE_OUTPUT = "/experiment/makeout"
-
-METHOD_RANGE = (311, 853)
-# IF SOS+
-# METHOD_RANGE = (346, 347)
-
-SOSREPAIR = True
-
-NUMBER_OF_TIMES_RERUNNING_TESTS = 1
-EXCLUDE_SCANF = False
-
-BULK_RUN_PATH = ""
-
-GCOV_OBJECTS = "/experiment/src/libtiff/.libs"

python/data/tests-list/libtiff/libtiff-bug-2007-11-02-371336d-865f7b2/test.sh

@@ -1,77 +0,0 @@
-#!/bin/bash
-bugrev=371336d
-dir=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
-
-run_test()
-{
-    cd $dir/src
-    /usr/bin/perl $dir/libtiff-run-tests.pl $1
-    RESULT=$?
-
-    cd ..
-    return 0
-}
-case $1 in    
-    p1) run_test 1 && exit 0 ;; 
-    p2) run_test 2 && exit 0 ;; 
-    p3) run_test 4 && exit 0 ;; 
-    p4) run_test 5 && exit 0 ;; 
-    p5) run_test 6 && exit 0 ;; 
-    p6) run_test 7 && exit 0 ;; 
-    p7) run_test 8 && exit 0 ;; 
-    p8) run_test 9 && exit 0 ;; 
-    p9) run_test 10 && exit 0 ;; 
-    p10) run_test 11 && exit 0 ;; 
-    p11) run_test 12 && exit 0 ;; 
-    p12) run_test 13 && exit 0 ;; 
-    p13) run_test 14 && exit 0 ;; 
-    p14) run_test 15 && exit 0 ;; 
-    p15) run_test 16 && exit 0 ;; 
-    p16) run_test 17 && exit 0 ;; 
-    p17) run_test 20 && exit 0 ;; 
-    p18) run_test 21 && exit 0 ;; 
-    p19) run_test 24 && exit 0 ;; 
-    p20) run_test 25 && exit 0 ;; 
-    p21) run_test 26 && exit 0 ;; 
-    p22) run_test 27 && exit 0 ;; 
-    p23) run_test 28 && exit 0 ;; 
-    p24) run_test 39 && exit 0 ;; 
-    p25) run_test 40 && exit 0 ;; 
-    p26) run_test 41 && exit 0 ;; 
-    p27) run_test 43 && exit 0 ;; 
-    p28) run_test 44 && exit 0 ;; 
-    p29) run_test 45 && exit 0 ;; 
-    p30) run_test 46 && exit 0 ;; 
-    p31) run_test 47 && exit 0 ;; 
-    p32) run_test 48 && exit 0 ;; 
-    p33) run_test 49 && exit 0 ;; 
-    p34) run_test 50 && exit 0 ;; 
-    p35) run_test 51 && exit 0 ;; 
-    p36) run_test 53 && exit 0 ;; 
-    p37) run_test 54 && exit 0 ;; 
-    p38) run_test 55 && exit 0 ;; 
-    p39) run_test 56 && exit 0 ;; 
-    p40) run_test 57 && exit 0 ;; 
-    p41) run_test 58 && exit 0 ;; 
-    p42) run_test 59 && exit 0 ;; 
-    p43) run_test 60 && exit 0 ;; 
-    p44) run_test 61 && exit 0 ;; 
-    p45) run_test 63 && exit 0 ;; 
-    p46) run_test 64 && exit 0 ;; 
-    p47) run_test 65 && exit 0 ;; 
-    p48) run_test 66 && exit 0 ;; 
-    p49) run_test 67 && exit 0 ;; 
-    p50) run_test 68 && exit 0 ;; 
-    p51) run_test 69 && exit 0 ;; 
-    p52) run_test 70 && exit 0 ;; 
-    p53) run_test 71 && exit 0 ;; 
-    p54) run_test 72 && exit 0 ;; 
-    p55) run_test 73 && exit 0 ;; 
-    p56) run_test 74 && exit 0 ;; 
-    p57) run_test 75 && exit 0 ;; 
-    p58) run_test 76 && exit 0 ;; 
-    p59) run_test 77 && exit 0 ;; 
-    p60) run_test 78 && exit 0 ;; 
-    n1) run_test 22 && exit 0 ;; 
-esac
-exit 1

python/data/tests-list/libtiff/libtiff-bug-2007-11-02-371336d-865f7b2/tests-list.txt

@@ -1,60 +0,0 @@
-n1
-p1
-p2
-p3
-p5
-p6
-p7
-p8
-p9
-p10
-p11
-p12
-p13
-p14
-p15
-p16
-p17
-p18
-p19
-p20
-p21
-p22
-p23
-p24
-p25
-p26
-p27
-p28
-p29
-p30
-p31
-p32
-p33
-p34
-p35
-p36
-p37
-p38
-p39
-p40
-p41
-p42
-p43
-p44
-p45
-p46
-p47
-p48
-p49
-p50
-p51
-p52
-p53
-p54
-p55
-p56
-p57
-p58
-p59
-p60

python/data/tests-list/libtiff/libtiff-bug-2009-02-05-764dbba-2e42d63/settings.py

@@ -1,84 +0,0 @@
-"""
-This file includes all the settings that could be modified for running SearchRepair/SOSRepair
-
-* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
-* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
- DB
-* Z3_COMMAND: The z3 command on this machine.
-* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
-* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
-* DATABASE: Information about the database.
-* LOGGING: Settings for logging.
-* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
-* VALID_TYPES: The variable types that are right now supported by SR.
------- Settings related to file under repair -------
-* TESTS_LIST: The path to a list of the tests that could be run on the file
-* TEST_SCRIPT: The path to a script that will run the test
-* COMPILE_SCRIPT: The path to a script that will compile the code
-* FAULTY_CODE: The path to the faulty code (a C file)
-* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
-* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
-automatically)
-* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
-* SOSREPAIR: If set to False it will only run SearchRepair features
-* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
-* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
-"""
-__author__ = 'Afsoon Afzal'
-
-import logging
-
-
-LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
-
-GENERATE_DB_PATH = '/experiment/src'
-
-Z3_COMMAND = '/opt/sosrepair/bin/z3'
-
-LARGEST_SNIPPET = 7
-SMALLEST_SNIPPET = 3
-
-DATABASE = {
-    'db_name': 'testdocker',
-    'user': 'docker',
-    'password': '1234'
-}
-
-LOGGING = {
-    'filename': 'logs/repair.log',
-    'level': logging.DEBUG
-}
-
-logging.basicConfig(**LOGGING)
-
-MAX_SUSPICIOUS_LINES = 10
-
-VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
-
-TESTS_LIST = "/experiment/tests-list.txt"
-TEST_SCRIPT = "/experiment/test.sh"
-TEST_SCRIPT_TYPE = "/bin/bash"
-COMPILE_SCRIPT = "/experiment/compile.sh"
-FAULTY_CODE = "/experiment/src/tools/tiffcrop.c"
-
-
-COMPILE_EXTRA_ARGS = [
-                    "-I/experiment/src",
-                    "-I/experiment/src/libtiff",
-                    "-I/usr/include",
-]
-
-MAKE_OUTPUT = "/experiment/makeout"
-
-METHOD_RANGE = (4950, 5131)
-# IF SOS+
-# METHOD_RANGE = (4969, 4970)
-
-SOSREPAIR = True
-
-NUMBER_OF_TIMES_RERUNNING_TESTS = 1
-EXCLUDE_SCANF = False
-
-BULK_RUN_PATH = ""
-
-GCOV_OBJECTS = ""

python/data/tests-list/libtiff/libtiff-bug-2009-02-05-764dbba-2e42d63/test.sh

@@ -1,90 +0,0 @@
-#!/bin/bash
-bugrev=764dbba
-dir=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
-
-
-run_test()
-{
-    cd $dir/src
-    /usr/bin/perl $dir/libtiff-run-tests.pl $1
-    RESULT=$?
-
-    cd ..
-    return 0
-}
-case $1 in
-    p1) run_test 1 && exit 0 ;; 
-    p2) run_test 2 && exit 0 ;; 
-    p3) run_test 3 && exit 0 ;; 
-    p4) run_test 4 && exit 0 ;; 
-    p5) run_test 5 && exit 0 ;; 
-    p6) run_test 6 && exit 0 ;; 
-    p7) run_test 7 && exit 0 ;; 
-    p8) run_test 8 && exit 0 ;; 
-    p9) run_test 9 && exit 0 ;; 
-    p10) run_test 10 && exit 0 ;; 
-    p11) run_test 11 && exit 0 ;; 
-    p12) run_test 12 && exit 0 ;; 
-    p13) run_test 13 && exit 0 ;; 
-    p14) run_test 14 && exit 0 ;; 
-    p15) run_test 15 && exit 0 ;; 
-    p16) run_test 16 && exit 0 ;; 
-    p17) run_test 17 && exit 0 ;; 
-    p18) run_test 19 && exit 0 ;; 
-    p19) run_test 20 && exit 0 ;; 
-    p20) run_test 21 && exit 0 ;; 
-    p21) run_test 22 && exit 0 ;; 
-    p22) run_test 23 && exit 0 ;; 
-    p23) run_test 24 && exit 0 ;; 
-    p24) run_test 25 && exit 0 ;; 
-    p25) run_test 26 && exit 0 ;; 
-    p26) run_test 27 && exit 0 ;; 
-    p27) run_test 28 && exit 0 ;; 
-    p28) run_test 29 && exit 0 ;; 
-    p29) run_test 30 && exit 0 ;; 
-    p30) run_test 31 && exit 0 ;; 
-    p31) run_test 33 && exit 0 ;; 
-    p32) run_test 34 && exit 0 ;; 
-    p33) run_test 35 && exit 0 ;; 
-    p34) run_test 36 && exit 0 ;; 
-    p35) run_test 37 && exit 0 ;; 
-    p36) run_test 38 && exit 0 ;; 
-    p37) run_test 49 && exit 0 ;; 
-    p38) run_test 50 && exit 0 ;; 
-    p39) run_test 51 && exit 0 ;; 
-    p40) run_test 53 && exit 0 ;; 
-    p41) run_test 54 && exit 0 ;; 
-    p42) run_test 55 && exit 0 ;; 
-    p43) run_test 56 && exit 0 ;; 
-    p44) run_test 57 && exit 0 ;; 
-    p45) run_test 58 && exit 0 ;; 
-    p46) run_test 59 && exit 0 ;; 
-    p47) run_test 60 && exit 0 ;; 
-    p48) run_test 61 && exit 0 ;; 
-    p49) run_test 63 && exit 0 ;; 
-    p50) run_test 64 && exit 0 ;; 
-    p51) run_test 65 && exit 0 ;; 
-    p52) run_test 66 && exit 0 ;; 
-    p53) run_test 67 && exit 0 ;; 
-    p54) run_test 68 && exit 0 ;; 
-    p55) run_test 69 && exit 0 ;; 
-    p56) run_test 70 && exit 0 ;; 
-    p57) run_test 71 && exit 0 ;; 
-    p58) run_test 72 && exit 0 ;; 
-    p59) run_test 73 && exit 0 ;; 
-    p60) run_test 74 && exit 0 ;; 
-    p61) run_test 75 && exit 0 ;; 
-    p62) run_test 76 && exit 0 ;; 
-    p63) run_test 77 && exit 0 ;; 
-    p64) run_test 78 && exit 0 ;; 
-    n1) run_test 39 && exit 0 ;; 
-    n2) run_test 40 && exit 0 ;; 
-    n3) run_test 41 && exit 0 ;; 
-    n4) run_test 43 && exit 0 ;; 
-    n5) run_test 44 && exit 0 ;; 
-    n6) run_test 45 && exit 0 ;; 
-    n7) run_test 46 && exit 0 ;; 
-    n8) run_test 47 && exit 0 ;; 
-    n9) run_test 48 && exit 0 ;; 
-esac
-exit 1

python/data/tests-list/libtiff/libtiff-bug-2009-02-05-764dbba-2e42d63/tests-list.txt

@@ -1,72 +0,0 @@
-n1
-n2
-n3
-n4
-n5
-n6
-n7
-n8
-n9
-p1
-p2
-p3
-p4
-p5
-p6
-p7
-p8
-p9
-p10
-p11
-p12
-p13
-p14
-p15
-p16
-p17
-p18
-p19
-p20
-p21
-p23
-p24
-p25
-p26
-p27
-p28
-p29
-p30
-p31
-p32
-p33
-p34
-p35
-p36
-p37
-p38
-p39
-p40
-p41
-p42
-p43
-p44
-p45
-p46
-p47
-p48
-p49
-p50
-p51
-p52
-p53
-p54
-p55
-p56
-p57
-p58
-p59
-p60
-p61
-p62
-p63
-p64

python/data/tests-list/libtiff/libtiff-bug-2009-08-28-e8a47d4-023b6df/settings.py

@@ -1,83 +0,0 @@
-"""
-This file includes all the settings that could be modified for running SearchRepair/SOSRepair
-
-* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
-* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
- DB
-* Z3_COMMAND: The z3 command on this machine.
-* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
-* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
-* DATABASE: Information about the database.
-* LOGGING: Settings for logging.
-* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
-* VALID_TYPES: The variable types that are right now supported by SR.
------- Settings related to file under repair -------
-* TESTS_LIST: The path to a list of the tests that could be run on the file
-* TEST_SCRIPT: The path to a script that will run the test
-* COMPILE_SCRIPT: The path to a script that will compile the code
-* FAULTY_CODE: The path to the faulty code (a C file)
-* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
-* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
-automatically)
-* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
-* SOSREPAIR: If set to False it will only run SearchRepair features
-* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
-* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
-"""
-__author__ = 'Afsoon Afzal'
-
-import logging
-
-
-LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
-
-GENERATE_DB_PATH = '/experiment/src'
-
-Z3_COMMAND = '/opt/sosrepair/bin/z3'
-
-LARGEST_SNIPPET = 7
-SMALLEST_SNIPPET = 3
-
-DATABASE = {
-    'db_name': 'testdocker',
-    'user': 'docker',
-    'password': '1234'
-}
-
-LOGGING = {
-    'filename': 'logs/repair.log',
-    'level': logging.DEBUG
-}
-
-logging.basicConfig(**LOGGING)
-
-MAX_SUSPICIOUS_LINES = 10
-
-VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
-
-TESTS_LIST = "/experiment/tests-list.txt"
-TEST_SCRIPT = "/experiment/test.sh"
-TEST_SCRIPT_TYPE = "/bin/bash"
-COMPILE_SCRIPT = "/experiment/compile.sh"
-FAULTY_CODE = "/experiment/src/tools/tiffinfo.c"
-
-
-COMPILE_EXTRA_ARGS = [
-                    "-I/experiment/src",
-                    "-I/usr/include",
-]
-
-MAKE_OUTPUT = "/experiment/makeout"
-
-METHOD_RANGE = (69, 161)
-# IF SOS+
-# METHOD_RANGE = (132, 134)
-
-SOSREPAIR = True
-
-NUMBER_OF_TIMES_RERUNNING_TESTS = 1
-EXCLUDE_SCANF = False
-
-BULK_RUN_PATH = ""
-
-GCOV_OBJECTS = ""

python/data/tests-list/libtiff/libtiff-bug-2009-08-28-e8a47d4-023b6df/test.sh

@@ -1,91 +0,0 @@
-#!/bin/bash
-bugrev=e8a47d4
-dir=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
-
-
-run_test()
-{
-    cd $dir/src
-    /usr/bin/perl $dir/libtiff-run-tests.pl $1
-    RESULT=$?
-
-    cd ..
-    return 0
-}
-case $1 in
-    p1) run_test 1 && exit 0 ;; 
-    p2) run_test 2 && exit 0 ;; 
-    p3) run_test 3 && exit 0 ;; 
-    p4) run_test 4 && exit 0 ;; 
-    p5) run_test 5 && exit 0 ;; 
-    p6) run_test 6 && exit 0 ;; 
-    p7) run_test 7 && exit 0 ;; 
-    p8) run_test 8 && exit 0 ;; 
-    p9) run_test 9 && exit 0 ;; 
-    p10) run_test 10 && exit 0 ;; 
-    p11) run_test 11 && exit 0 ;; 
-    p12) run_test 12 && exit 0 ;; 
-    p13) run_test 13 && exit 0 ;; 
-    p14) run_test 14 && exit 0 ;; 
-    p15) run_test 15 && exit 0 ;; 
-    p16) run_test 16 && exit 0 ;; 
-    p17) run_test 17 && exit 0 ;; 
-    p18) run_test 18 && exit 0 ;; 
-    p19) run_test 19 && exit 0 ;; 
-    p20) run_test 20 && exit 0 ;; 
-    p21) run_test 21 && exit 0 ;; 
-    p22) run_test 22 && exit 0 ;; 
-    p23) run_test 23 && exit 0 ;; 
-    p24) run_test 24 && exit 0 ;; 
-    p25) run_test 25 && exit 0 ;; 
-    p26) run_test 26 && exit 0 ;; 
-    p27) run_test 27 && exit 0 ;; 
-    p28) run_test 28 && exit 0 ;; 
-    p29) run_test 29 && exit 0 ;; 
-    p30) run_test 30 && exit 0 ;; 
-    p31) run_test 31 && exit 0 ;; 
-    p32) run_test 33 && exit 0 ;; 
-    p33) run_test 34 && exit 0 ;; 
-    p34) run_test 35 && exit 0 ;; 
-    p35) run_test 36 && exit 0 ;; 
-    p36) run_test 37 && exit 0 ;; 
-    p37) run_test 38 && exit 0 ;; 
-    p38) run_test 39 && exit 0 ;; 
-    p39) run_test 40 && exit 0 ;; 
-    p40) run_test 41 && exit 0 ;; 
-    p41) run_test 43 && exit 0 ;; 
-    p42) run_test 44 && exit 0 ;; 
-    p43) run_test 45 && exit 0 ;; 
-    p44) run_test 46 && exit 0 ;; 
-    p45) run_test 47 && exit 0 ;; 
-    p46) run_test 48 && exit 0 ;; 
-    p47) run_test 50 && exit 0 ;; 
-    p48) run_test 51 && exit 0 ;; 
-    p49) run_test 53 && exit 0 ;; 
-    p50) run_test 54 && exit 0 ;; 
-    p51) run_test 55 && exit 0 ;; 
-    p52) run_test 56 && exit 0 ;; 
-    p53) run_test 57 && exit 0 ;; 
-    p54) run_test 58 && exit 0 ;; 
-    p55) run_test 59 && exit 0 ;; 
-    p56) run_test 60 && exit 0 ;; 
-    p57) run_test 61 && exit 0 ;; 
-    p58) run_test 63 && exit 0 ;; 
-    p59) run_test 64 && exit 0 ;; 
-    p60) run_test 65 && exit 0 ;; 
-    p61) run_test 66 && exit 0 ;; 
-    p62) run_test 67 && exit 0 ;; 
-    p63) run_test 68 && exit 0 ;; 
-    p64) run_test 69 && exit 0 ;; 
-    p65) run_test 70 && exit 0 ;; 
-    p66) run_test 71 && exit 0 ;; 
-    p67) run_test 72 && exit 0 ;; 
-    p68) run_test 73 && exit 0 ;; 
-    p69) run_test 74 && exit 0 ;; 
-    p70) run_test 75 && exit 0 ;; 
-    p71) run_test 76 && exit 0 ;; 
-    p72) run_test 77 && exit 0 ;; 
-    p73) run_test 78 && exit 0 ;; 
-    n1) run_test 49 && exit 0 ;; 
-esac
-exit 1

python/data/tests-list/libtiff/libtiff-bug-2009-08-28-e8a47d4-023b6df/tests-list.txt

@@ -1,74 +0,0 @@
-n1
-p1
-p2
-p3
-p4
-p5
-p6
-p7
-p8
-p9
-p10
-p11
-p12
-p13
-p14
-p15
-p16
-p17
-p18
-p19
-p20
-p21
-p22
-p23
-p24
-p25
-p26
-p27
-p28
-p29
-p30
-p31
-p32
-p33
-p34
-p35
-p36
-p37
-p38
-p39
-p40
-p41
-p42
-p43
-p44
-p45
-p46
-p47
-p48
-p49
-p50
-p51
-p52
-p53
-p54
-p55
-p56
-p57
-p58
-p59
-p60
-p61
-p62
-p63
-p64
-p65
-p66
-p67
-p68
-p69
-p70
-p71
-p72
-p73

python/data/tests-list/libtiff/libtiff-bug-2010-11-27-eb326f9-eec7ec0/settings.py

@@ -1,83 +0,0 @@
-"""
-This file includes all the settings that could be modified for running SearchRepair/SOSRepair
-
-* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
-* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
- DB
-* Z3_COMMAND: The z3 command on this machine.
-* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
-* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
-* DATABASE: Information about the database.
-* LOGGING: Settings for logging.
-* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
-* VALID_TYPES: The variable types that are right now supported by SR.
------- Settings related to file under repair -------
-* TESTS_LIST: The path to a list of the tests that could be run on the file
-* TEST_SCRIPT: The path to a script that will run the test
-* COMPILE_SCRIPT: The path to a script that will compile the code
-* FAULTY_CODE: The path to the faulty code (a C file)
-* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
-* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
-automatically)
-* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
-* SOSREPAIR: If set to False it will only run SearchRepair features
-* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
-* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
-"""
-__author__ = 'Afsoon Afzal'
-
-import logging
-
-
-LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
-
-GENERATE_DB_PATH = '/experiment/src'
-
-Z3_COMMAND = '/opt/sosrepair/bin/z3'
-
-LARGEST_SNIPPET = 7
-SMALLEST_SNIPPET = 3
-
-DATABASE = {
-    'db_name': 'testdocker',
-    'user': 'docker',
-    'password': '1234'
-}
-
-LOGGING = {
-    'filename': 'logs/repair.log',
-    'level': logging.DEBUG
-}
-
-logging.basicConfig(**LOGGING)
-
-MAX_SUSPICIOUS_LINES = 10
-
-VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
-
-TESTS_LIST = "/experiment/tests-list.txt"
-TEST_SCRIPT = "/experiment/test.sh"
-TEST_SCRIPT_TYPE = "/bin/bash"
-COMPILE_SCRIPT = "/experiment/compile.sh"
-FAULTY_CODE = "/experiment/src/tools/tiff2pdf.c"
-
-
-COMPILE_EXTRA_ARGS = [
-                    "-I/experiment/src",
-                    "-I/usr/include",
-]
-
-MAKE_OUTPUT = "/experiment/makeout"
-
-METHOD_RANGE = (559, 784)
-# IF SOS+
-# METHOD_RANGE = (769, 770)
-
-SOSREPAIR = True
-
-NUMBER_OF_TIMES_RERUNNING_TESTS = 1
-EXCLUDE_SCANF = False
-
-BULK_RUN_PATH = ""
-
-GCOV_OBJECTS = ""

python/data/tests-list/libtiff/libtiff-bug-2010-11-27-eb326f9-eec7ec0/test.sh

@@ -1,93 +0,0 @@
-#!/bin/bash
-bugrev=eb326f9
-dir=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
-
-run_test()
-{
-    cd $dir/src
-    /usr/bin/perl $dir/libtiff-run-tests.pl $1
-    RESULT=$?
-
-    cd ..
-    return 0
-}
-case $1 in
-    p1) run_test 1 && exit 0 ;; 
-    p2) run_test 2 && exit 0 ;; 
-    p3) run_test 3 && exit 0 ;; 
-    p4) run_test 4 && exit 0 ;; 
-    p5) run_test 5 && exit 0 ;; 
-    p6) run_test 6 && exit 0 ;; 
-    p7) run_test 7 && exit 0 ;; 
-    p8) run_test 8 && exit 0 ;; 
-    p9) run_test 9 && exit 0 ;; 
-    p10) run_test 10 && exit 0 ;; 
-    p11) run_test 11 && exit 0 ;; 
-    p12) run_test 12 && exit 0 ;; 
-    p13) run_test 13 && exit 0 ;; 
-    p14) run_test 14 && exit 0 ;; 
-    p15) run_test 15 && exit 0 ;; 
-    p16) run_test 16 && exit 0 ;; 
-    p17) run_test 17 && exit 0 ;; 
-    p18) run_test 18 && exit 0 ;; 
-    p19) run_test 19 && exit 0 ;; 
-    p20) run_test 20 && exit 0 ;; 
-    p21) run_test 21 && exit 0 ;; 
-    p22) run_test 22 && exit 0 ;; 
-    p23) run_test 23 && exit 0 ;; 
-    p24) run_test 24 && exit 0 ;; 
-    p25) run_test 25 && exit 0 ;; 
-    p26) run_test 26 && exit 0 ;; 
-    p27) run_test 27 && exit 0 ;; 
-    p28) run_test 29 && exit 0 ;; 
-    p29) run_test 30 && exit 0 ;; 
-    p30) run_test 31 && exit 0 ;; 
-    p31) run_test 32 && exit 0 ;; 
-    p32) run_test 33 && exit 0 ;; 
-    p33) run_test 34 && exit 0 ;; 
-    p34) run_test 35 && exit 0 ;; 
-    p35) run_test 36 && exit 0 ;; 
-    p36) run_test 37 && exit 0 ;; 
-    p37) run_test 38 && exit 0 ;; 
-    p38) run_test 39 && exit 0 ;; 
-    p39) run_test 40 && exit 0 ;; 
-    p40) run_test 41 && exit 0 ;; 
-    p41) run_test 42 && exit 0 ;; 
-    p42) run_test 43 && exit 0 ;; 
-    p43) run_test 44 && exit 0 ;; 
-    p44) run_test 45 && exit 0 ;; 
-    p45) run_test 46 && exit 0 ;; 
-    p46) run_test 47 && exit 0 ;; 
-    p47) run_test 48 && exit 0 ;; 
-    p48) run_test 50 && exit 0 ;; 
-    p49) run_test 51 && exit 0 ;; 
-    p50) run_test 52 && exit 0 ;; 
-    p51) run_test 53 && exit 0 ;; 
-    p52) run_test 54 && exit 0 ;; 
-    p53) run_test 55 && exit 0 ;; 
-    p54) run_test 56 && exit 0 ;; 
-    p55) run_test 57 && exit 0 ;; 
-    p56) run_test 58 && exit 0 ;; 
-    p57) run_test 59 && exit 0 ;; 
-    p58) run_test 60 && exit 0 ;; 
-    p59) run_test 61 && exit 0 ;; 
-    p60) run_test 62 && exit 0 ;; 
-    p61) run_test 63 && exit 0 ;; 
-    p62) run_test 64 && exit 0 ;; 
-    p63) run_test 65 && exit 0 ;; 
-    p64) run_test 66 && exit 0 ;; 
-    p65) run_test 67 && exit 0 ;; 
-    p66) run_test 68 && exit 0 ;; 
-    p67) run_test 69 && exit 0 ;; 
-    p68) run_test 70 && exit 0 ;; 
-    p69) run_test 71 && exit 0 ;; 
-    p70) run_test 72 && exit 0 ;; 
-    p71) run_test 73 && exit 0 ;; 
-    p72) run_test 74 && exit 0 ;; 
-    p73) run_test 75 && exit 0 ;; 
-    p74) run_test 76 && exit 0 ;; 
-    p75) run_test 77 && exit 0 ;; 
-    p76) run_test 78 && exit 0 ;; 
-    n1) run_test 28 && exit 0 ;; 
-esac
-exit 1

python/data/tests-list/libtiff/libtiff-bug-2010-11-27-eb326f9-eec7ec0/tests-list.txt

@@ -1,76 +0,0 @@
-n1
-p1
-p2
-p3
-p4
-p5
-p6
-p7
-p8
-p9
-p10
-p11
-p12
-p13
-p14
-p15
-p16
-p17
-p18
-p19
-p20
-p21
-p23
-p24
-p25
-p26
-p27
-p28
-p29
-p30
-p31
-p32
-p33
-p34
-p35
-p36
-p37
-p38
-p39
-p40
-p41
-p42
-p43
-p44
-p45
-p46
-p47
-p48
-p49
-p50
-p51
-p52
-p53
-p54
-p55
-p56
-p57
-p58
-p59
-p60
-p61
-p62
-p63
-p64
-p65
-p66
-p67
-p68
-p69
-p70
-p71
-p72
-p73
-p74
-p75
-p76

python/data/tests-list/libtiff/makeout

@@ -1,675 +0,0 @@
-Making all in port
-make[1]: Entering directory `/experiment/src/port'
-if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff     -m32 -Wall -MT dummy.lo -MD -MP -MF ".deps/dummy.Tpo" -c -o dummy.lo dummy.c; \
-	then mv -f ".deps/dummy.Tpo" ".deps/dummy.Plo"; else rm -f ".deps/dummy.Tpo"; exit 1; fi
-mkdir .libs
- gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -m32 -Wall -MT dummy.lo -MD -MP -MF .deps/dummy.Tpo -c dummy.c  -fPIC -DPIC -o .libs/dummy.o
-dummy.c:8:1: warning: 'libport_dummy_function' defined but not used [-Wunused-function]
- libport_dummy_function()
- ^
- gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -m32 -Wall -MT dummy.lo -MD -MP -MF .deps/dummy.Tpo -c dummy.c -o dummy.o >/dev/null 2>&1
-/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o libport.la   dummy.lo  -lm -lc 
-ar cru .libs/libport.a .libs/dummy.o
-ranlib .libs/libport.a
-creating libport.la
-(cd .libs && rm -f libport.la && ln -s ../libport.la libport.la)
-make[1]: Leaving directory `/experiment/src/port'
-Making all in libtiff
-make[1]: Entering directory `/experiment/src/libtiff'
-make  all-am
-make[2]: Entering directory `/experiment/src/libtiff'
-if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_aux.lo -MD -MP -MF ".deps/tif_aux.Tpo" -c -o tif_aux.lo tif_aux.c; \
-	then mv -f ".deps/tif_aux.Tpo" ".deps/tif_aux.Plo"; else rm -f ".deps/tif_aux.Tpo"; exit 1; fi
-mkdir .libs
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_aux.lo -MD -MP -MF .deps/tif_aux.Tpo -c tif_aux.c  -fPIC -DPIC -o .libs/tif_aux.o
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_aux.lo -MD -MP -MF .deps/tif_aux.Tpo -c tif_aux.c -o tif_aux.o >/dev/null 2>&1
-if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_close.lo -MD -MP -MF ".deps/tif_close.Tpo" -c -o tif_close.lo tif_close.c; \
-	then mv -f ".deps/tif_close.Tpo" ".deps/tif_close.Plo"; else rm -f ".deps/tif_close.Tpo"; exit 1; fi
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_close.lo -MD -MP -MF .deps/tif_close.Tpo -c tif_close.c  -fPIC -DPIC -o .libs/tif_close.o
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_close.lo -MD -MP -MF .deps/tif_close.Tpo -c tif_close.c -o tif_close.o >/dev/null 2>&1
-if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_codec.lo -MD -MP -MF ".deps/tif_codec.Tpo" -c -o tif_codec.lo tif_codec.c; \
-	then mv -f ".deps/tif_codec.Tpo" ".deps/tif_codec.Plo"; else rm -f ".deps/tif_codec.Tpo"; exit 1; fi
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_codec.lo -MD -MP -MF .deps/tif_codec.Tpo -c tif_codec.c  -fPIC -DPIC -o .libs/tif_codec.o
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_codec.lo -MD -MP -MF .deps/tif_codec.Tpo -c tif_codec.c -o tif_codec.o >/dev/null 2>&1
-if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_color.lo -MD -MP -MF ".deps/tif_color.Tpo" -c -o tif_color.lo tif_color.c; \
-	then mv -f ".deps/tif_color.Tpo" ".deps/tif_color.Plo"; else rm -f ".deps/tif_color.Tpo"; exit 1; fi
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_color.lo -MD -MP -MF .deps/tif_color.Tpo -c tif_color.c  -fPIC -DPIC -o .libs/tif_color.o
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_color.lo -MD -MP -MF .deps/tif_color.Tpo -c tif_color.c -o tif_color.o >/dev/null 2>&1
-if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_compress.lo -MD -MP -MF ".deps/tif_compress.Tpo" -c -o tif_compress.lo tif_compress.c; \
-	then mv -f ".deps/tif_compress.Tpo" ".deps/tif_compress.Plo"; else rm -f ".deps/tif_compress.Tpo"; exit 1; fi
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_compress.lo -MD -MP -MF .deps/tif_compress.Tpo -c tif_compress.c  -fPIC -DPIC -o .libs/tif_compress.o
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_compress.lo -MD -MP -MF .deps/tif_compress.Tpo -c tif_compress.c -o tif_compress.o >/dev/null 2>&1
-if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_dir.lo -MD -MP -MF ".deps/tif_dir.Tpo" -c -o tif_dir.lo tif_dir.c; \
-	then mv -f ".deps/tif_dir.Tpo" ".deps/tif_dir.Plo"; else rm -f ".deps/tif_dir.Tpo"; exit 1; fi
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_dir.lo -MD -MP -MF .deps/tif_dir.Tpo -c tif_dir.c  -fPIC -DPIC -o .libs/tif_dir.o
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_dir.lo -MD -MP -MF .deps/tif_dir.Tpo -c tif_dir.c -o tif_dir.o >/dev/null 2>&1
-if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_dirinfo.lo -MD -MP -MF ".deps/tif_dirinfo.Tpo" -c -o tif_dirinfo.lo tif_dirinfo.c; \
-	then mv -f ".deps/tif_dirinfo.Tpo" ".deps/tif_dirinfo.Plo"; else rm -f ".deps/tif_dirinfo.Tpo"; exit 1; fi
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_dirinfo.lo -MD -MP -MF .deps/tif_dirinfo.Tpo -c tif_dirinfo.c  -fPIC -DPIC -o .libs/tif_dirinfo.o
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_dirinfo.lo -MD -MP -MF .deps/tif_dirinfo.Tpo -c tif_dirinfo.c -o tif_dirinfo.o >/dev/null 2>&1
-if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_dirread.lo -MD -MP -MF ".deps/tif_dirread.Tpo" -c -o tif_dirread.lo tif_dirread.c; \
-	then mv -f ".deps/tif_dirread.Tpo" ".deps/tif_dirread.Plo"; else rm -f ".deps/tif_dirread.Tpo"; exit 1; fi
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_dirread.lo -MD -MP -MF .deps/tif_dirread.Tpo -c tif_dirread.c  -fPIC -DPIC -o .libs/tif_dirread.o
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_dirread.lo -MD -MP -MF .deps/tif_dirread.Tpo -c tif_dirread.c -o tif_dirread.o >/dev/null 2>&1
-if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_dirwrite.lo -MD -MP -MF ".deps/tif_dirwrite.Tpo" -c -o tif_dirwrite.lo tif_dirwrite.c; \
-	then mv -f ".deps/tif_dirwrite.Tpo" ".deps/tif_dirwrite.Plo"; else rm -f ".deps/tif_dirwrite.Tpo"; exit 1; fi
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_dirwrite.lo -MD -MP -MF .deps/tif_dirwrite.Tpo -c tif_dirwrite.c  -fPIC -DPIC -o .libs/tif_dirwrite.o
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_dirwrite.lo -MD -MP -MF .deps/tif_dirwrite.Tpo -c tif_dirwrite.c -o tif_dirwrite.o >/dev/null 2>&1
-if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_dumpmode.lo -MD -MP -MF ".deps/tif_dumpmode.Tpo" -c -o tif_dumpmode.lo tif_dumpmode.c; \
-	then mv -f ".deps/tif_dumpmode.Tpo" ".deps/tif_dumpmode.Plo"; else rm -f ".deps/tif_dumpmode.Tpo"; exit 1; fi
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_dumpmode.lo -MD -MP -MF .deps/tif_dumpmode.Tpo -c tif_dumpmode.c  -fPIC -DPIC -o .libs/tif_dumpmode.o
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_dumpmode.lo -MD -MP -MF .deps/tif_dumpmode.Tpo -c tif_dumpmode.c -o tif_dumpmode.o >/dev/null 2>&1
-if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_error.lo -MD -MP -MF ".deps/tif_error.Tpo" -c -o tif_error.lo tif_error.c; \
-	then mv -f ".deps/tif_error.Tpo" ".deps/tif_error.Plo"; else rm -f ".deps/tif_error.Tpo"; exit 1; fi
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_error.lo -MD -MP -MF .deps/tif_error.Tpo -c tif_error.c  -fPIC -DPIC -o .libs/tif_error.o
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_error.lo -MD -MP -MF .deps/tif_error.Tpo -c tif_error.c -o tif_error.o >/dev/null 2>&1
-if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_extension.lo -MD -MP -MF ".deps/tif_extension.Tpo" -c -o tif_extension.lo tif_extension.c; \
-	then mv -f ".deps/tif_extension.Tpo" ".deps/tif_extension.Plo"; else rm -f ".deps/tif_extension.Tpo"; exit 1; fi
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_extension.lo -MD -MP -MF .deps/tif_extension.Tpo -c tif_extension.c  -fPIC -DPIC -o .libs/tif_extension.o
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_extension.lo -MD -MP -MF .deps/tif_extension.Tpo -c tif_extension.c -o tif_extension.o >/dev/null 2>&1
-if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_fax3.lo -MD -MP -MF ".deps/tif_fax3.Tpo" -c -o tif_fax3.lo tif_fax3.c; \
-	then mv -f ".deps/tif_fax3.Tpo" ".deps/tif_fax3.Plo"; else rm -f ".deps/tif_fax3.Tpo"; exit 1; fi
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_fax3.lo -MD -MP -MF .deps/tif_fax3.Tpo -c tif_fax3.c  -fPIC -DPIC -o .libs/tif_fax3.o
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_fax3.lo -MD -MP -MF .deps/tif_fax3.Tpo -c tif_fax3.c -o tif_fax3.o >/dev/null 2>&1
-if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_fax3sm.lo -MD -MP -MF ".deps/tif_fax3sm.Tpo" -c -o tif_fax3sm.lo tif_fax3sm.c; \
-	then mv -f ".deps/tif_fax3sm.Tpo" ".deps/tif_fax3sm.Plo"; else rm -f ".deps/tif_fax3sm.Tpo"; exit 1; fi
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_fax3sm.lo -MD -MP -MF .deps/tif_fax3sm.Tpo -c tif_fax3sm.c  -fPIC -DPIC -o .libs/tif_fax3sm.o
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_fax3sm.lo -MD -MP -MF .deps/tif_fax3sm.Tpo -c tif_fax3sm.c -o tif_fax3sm.o >/dev/null 2>&1
-if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_flush.lo -MD -MP -MF ".deps/tif_flush.Tpo" -c -o tif_flush.lo tif_flush.c; \
-	then mv -f ".deps/tif_flush.Tpo" ".deps/tif_flush.Plo"; else rm -f ".deps/tif_flush.Tpo"; exit 1; fi
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_flush.lo -MD -MP -MF .deps/tif_flush.Tpo -c tif_flush.c  -fPIC -DPIC -o .libs/tif_flush.o
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_flush.lo -MD -MP -MF .deps/tif_flush.Tpo -c tif_flush.c -o tif_flush.o >/dev/null 2>&1
-if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_getimage.lo -MD -MP -MF ".deps/tif_getimage.Tpo" -c -o tif_getimage.lo tif_getimage.c; \
-	then mv -f ".deps/tif_getimage.Tpo" ".deps/tif_getimage.Plo"; else rm -f ".deps/tif_getimage.Tpo"; exit 1; fi
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_getimage.lo -MD -MP -MF .deps/tif_getimage.Tpo -c tif_getimage.c  -fPIC -DPIC -o .libs/tif_getimage.o
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_getimage.lo -MD -MP -MF .deps/tif_getimage.Tpo -c tif_getimage.c -o tif_getimage.o >/dev/null 2>&1
-if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_jpeg.lo -MD -MP -MF ".deps/tif_jpeg.Tpo" -c -o tif_jpeg.lo tif_jpeg.c; \
-	then mv -f ".deps/tif_jpeg.Tpo" ".deps/tif_jpeg.Plo"; else rm -f ".deps/tif_jpeg.Tpo"; exit 1; fi
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_jpeg.lo -MD -MP -MF .deps/tif_jpeg.Tpo -c tif_jpeg.c  -fPIC -DPIC -o .libs/tif_jpeg.o
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_jpeg.lo -MD -MP -MF .deps/tif_jpeg.Tpo -c tif_jpeg.c -o tif_jpeg.o >/dev/null 2>&1
-if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_luv.lo -MD -MP -MF ".deps/tif_luv.Tpo" -c -o tif_luv.lo tif_luv.c; \
-	then mv -f ".deps/tif_luv.Tpo" ".deps/tif_luv.Plo"; else rm -f ".deps/tif_luv.Tpo"; exit 1; fi
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_luv.lo -MD -MP -MF .deps/tif_luv.Tpo -c tif_luv.c  -fPIC -DPIC -o .libs/tif_luv.o
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_luv.lo -MD -MP -MF .deps/tif_luv.Tpo -c tif_luv.c -o tif_luv.o >/dev/null 2>&1
-if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_lzw.lo -MD -MP -MF ".deps/tif_lzw.Tpo" -c -o tif_lzw.lo tif_lzw.c; \
-	then mv -f ".deps/tif_lzw.Tpo" ".deps/tif_lzw.Plo"; else rm -f ".deps/tif_lzw.Tpo"; exit 1; fi
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_lzw.lo -MD -MP -MF .deps/tif_lzw.Tpo -c tif_lzw.c  -fPIC -DPIC -o .libs/tif_lzw.o
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_lzw.lo -MD -MP -MF .deps/tif_lzw.Tpo -c tif_lzw.c -o tif_lzw.o >/dev/null 2>&1
-if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_next.lo -MD -MP -MF ".deps/tif_next.Tpo" -c -o tif_next.lo tif_next.c; \
-	then mv -f ".deps/tif_next.Tpo" ".deps/tif_next.Plo"; else rm -f ".deps/tif_next.Tpo"; exit 1; fi
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_next.lo -MD -MP -MF .deps/tif_next.Tpo -c tif_next.c  -fPIC -DPIC -o .libs/tif_next.o
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_next.lo -MD -MP -MF .deps/tif_next.Tpo -c tif_next.c -o tif_next.o >/dev/null 2>&1
-if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_ojpeg.lo -MD -MP -MF ".deps/tif_ojpeg.Tpo" -c -o tif_ojpeg.lo tif_ojpeg.c; \
-	then mv -f ".deps/tif_ojpeg.Tpo" ".deps/tif_ojpeg.Plo"; else rm -f ".deps/tif_ojpeg.Tpo"; exit 1; fi
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_ojpeg.lo -MD -MP -MF .deps/tif_ojpeg.Tpo -c tif_ojpeg.c  -fPIC -DPIC -o .libs/tif_ojpeg.o
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_ojpeg.lo -MD -MP -MF .deps/tif_ojpeg.Tpo -c tif_ojpeg.c -o tif_ojpeg.o >/dev/null 2>&1
-if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_open.lo -MD -MP -MF ".deps/tif_open.Tpo" -c -o tif_open.lo tif_open.c; \
-	then mv -f ".deps/tif_open.Tpo" ".deps/tif_open.Plo"; else rm -f ".deps/tif_open.Tpo"; exit 1; fi
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_open.lo -MD -MP -MF .deps/tif_open.Tpo -c tif_open.c  -fPIC -DPIC -o .libs/tif_open.o
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_open.lo -MD -MP -MF .deps/tif_open.Tpo -c tif_open.c -o tif_open.o >/dev/null 2>&1
-if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_packbits.lo -MD -MP -MF ".deps/tif_packbits.Tpo" -c -o tif_packbits.lo tif_packbits.c; \
-	then mv -f ".deps/tif_packbits.Tpo" ".deps/tif_packbits.Plo"; else rm -f ".deps/tif_packbits.Tpo"; exit 1; fi
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_packbits.lo -MD -MP -MF .deps/tif_packbits.Tpo -c tif_packbits.c  -fPIC -DPIC -o .libs/tif_packbits.o
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_packbits.lo -MD -MP -MF .deps/tif_packbits.Tpo -c tif_packbits.c -o tif_packbits.o >/dev/null 2>&1
-if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_pixarlog.lo -MD -MP -MF ".deps/tif_pixarlog.Tpo" -c -o tif_pixarlog.lo tif_pixarlog.c; \
-	then mv -f ".deps/tif_pixarlog.Tpo" ".deps/tif_pixarlog.Plo"; else rm -f ".deps/tif_pixarlog.Tpo"; exit 1; fi
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_pixarlog.lo -MD -MP -MF .deps/tif_pixarlog.Tpo -c tif_pixarlog.c  -fPIC -DPIC -o .libs/tif_pixarlog.o
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_pixarlog.lo -MD -MP -MF .deps/tif_pixarlog.Tpo -c tif_pixarlog.c -o tif_pixarlog.o >/dev/null 2>&1
-if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_predict.lo -MD -MP -MF ".deps/tif_predict.Tpo" -c -o tif_predict.lo tif_predict.c; \
-	then mv -f ".deps/tif_predict.Tpo" ".deps/tif_predict.Plo"; else rm -f ".deps/tif_predict.Tpo"; exit 1; fi
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_predict.lo -MD -MP -MF .deps/tif_predict.Tpo -c tif_predict.c  -fPIC -DPIC -o .libs/tif_predict.o
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_predict.lo -MD -MP -MF .deps/tif_predict.Tpo -c tif_predict.c -o tif_predict.o >/dev/null 2>&1
-if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_print.lo -MD -MP -MF ".deps/tif_print.Tpo" -c -o tif_print.lo tif_print.c; \
-	then mv -f ".deps/tif_print.Tpo" ".deps/tif_print.Plo"; else rm -f ".deps/tif_print.Tpo"; exit 1; fi
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_print.lo -MD -MP -MF .deps/tif_print.Tpo -c tif_print.c  -fPIC -DPIC -o .libs/tif_print.o
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_print.lo -MD -MP -MF .deps/tif_print.Tpo -c tif_print.c -o tif_print.o >/dev/null 2>&1
-if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_read.lo -MD -MP -MF ".deps/tif_read.Tpo" -c -o tif_read.lo tif_read.c; \
-	then mv -f ".deps/tif_read.Tpo" ".deps/tif_read.Plo"; else rm -f ".deps/tif_read.Tpo"; exit 1; fi
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_read.lo -MD -MP -MF .deps/tif_read.Tpo -c tif_read.c  -fPIC -DPIC -o .libs/tif_read.o
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_read.lo -MD -MP -MF .deps/tif_read.Tpo -c tif_read.c -o tif_read.o >/dev/null 2>&1
-if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_strip.lo -MD -MP -MF ".deps/tif_strip.Tpo" -c -o tif_strip.lo tif_strip.c; \
-	then mv -f ".deps/tif_strip.Tpo" ".deps/tif_strip.Plo"; else rm -f ".deps/tif_strip.Tpo"; exit 1; fi
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_strip.lo -MD -MP -MF .deps/tif_strip.Tpo -c tif_strip.c  -fPIC -DPIC -o .libs/tif_strip.o
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_strip.lo -MD -MP -MF .deps/tif_strip.Tpo -c tif_strip.c -o tif_strip.o >/dev/null 2>&1
-if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_swab.lo -MD -MP -MF ".deps/tif_swab.Tpo" -c -o tif_swab.lo tif_swab.c; \
-	then mv -f ".deps/tif_swab.Tpo" ".deps/tif_swab.Plo"; else rm -f ".deps/tif_swab.Tpo"; exit 1; fi
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_swab.lo -MD -MP -MF .deps/tif_swab.Tpo -c tif_swab.c  -fPIC -DPIC -o .libs/tif_swab.o
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_swab.lo -MD -MP -MF .deps/tif_swab.Tpo -c tif_swab.c -o tif_swab.o >/dev/null 2>&1
-if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_thunder.lo -MD -MP -MF ".deps/tif_thunder.Tpo" -c -o tif_thunder.lo tif_thunder.c; \
-	then mv -f ".deps/tif_thunder.Tpo" ".deps/tif_thunder.Plo"; else rm -f ".deps/tif_thunder.Tpo"; exit 1; fi
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_thunder.lo -MD -MP -MF .deps/tif_thunder.Tpo -c tif_thunder.c  -fPIC -DPIC -o .libs/tif_thunder.o
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_thunder.lo -MD -MP -MF .deps/tif_thunder.Tpo -c tif_thunder.c -o tif_thunder.o >/dev/null 2>&1
-if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_tile.lo -MD -MP -MF ".deps/tif_tile.Tpo" -c -o tif_tile.lo tif_tile.c; \
-	then mv -f ".deps/tif_tile.Tpo" ".deps/tif_tile.Plo"; else rm -f ".deps/tif_tile.Tpo"; exit 1; fi
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_tile.lo -MD -MP -MF .deps/tif_tile.Tpo -c tif_tile.c  -fPIC -DPIC -o .libs/tif_tile.o
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_tile.lo -MD -MP -MF .deps/tif_tile.Tpo -c tif_tile.c -o tif_tile.o >/dev/null 2>&1
-if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_unix.lo -MD -MP -MF ".deps/tif_unix.Tpo" -c -o tif_unix.lo tif_unix.c; \
-	then mv -f ".deps/tif_unix.Tpo" ".deps/tif_unix.Plo"; else rm -f ".deps/tif_unix.Tpo"; exit 1; fi
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_unix.lo -MD -MP -MF .deps/tif_unix.Tpo -c tif_unix.c  -fPIC -DPIC -o .libs/tif_unix.o
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_unix.lo -MD -MP -MF .deps/tif_unix.Tpo -c tif_unix.c -o tif_unix.o >/dev/null 2>&1
-if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_version.lo -MD -MP -MF ".deps/tif_version.Tpo" -c -o tif_version.lo tif_version.c; \
-	then mv -f ".deps/tif_version.Tpo" ".deps/tif_version.Plo"; else rm -f ".deps/tif_version.Tpo"; exit 1; fi
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_version.lo -MD -MP -MF .deps/tif_version.Tpo -c tif_version.c  -fPIC -DPIC -o .libs/tif_version.o
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_version.lo -MD -MP -MF .deps/tif_version.Tpo -c tif_version.c -o tif_version.o >/dev/null 2>&1
-if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_warning.lo -MD -MP -MF ".deps/tif_warning.Tpo" -c -o tif_warning.lo tif_warning.c; \
-	then mv -f ".deps/tif_warning.Tpo" ".deps/tif_warning.Plo"; else rm -f ".deps/tif_warning.Tpo"; exit 1; fi
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_warning.lo -MD -MP -MF .deps/tif_warning.Tpo -c tif_warning.c  -fPIC -DPIC -o .libs/tif_warning.o
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_warning.lo -MD -MP -MF .deps/tif_warning.Tpo -c tif_warning.c -o tif_warning.o >/dev/null 2>&1
-if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_write.lo -MD -MP -MF ".deps/tif_write.Tpo" -c -o tif_write.lo tif_write.c; \
-	then mv -f ".deps/tif_write.Tpo" ".deps/tif_write.Plo"; else rm -f ".deps/tif_write.Tpo"; exit 1; fi
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_write.lo -MD -MP -MF .deps/tif_write.Tpo -c tif_write.c  -fPIC -DPIC -o .libs/tif_write.o
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_write.lo -MD -MP -MF .deps/tif_write.Tpo -c tif_write.c -o tif_write.o >/dev/null 2>&1
-if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_zip.lo -MD -MP -MF ".deps/tif_zip.Tpo" -c -o tif_zip.lo tif_zip.c; \
-	then mv -f ".deps/tif_zip.Tpo" ".deps/tif_zip.Plo"; else rm -f ".deps/tif_zip.Tpo"; exit 1; fi
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_zip.lo -MD -MP -MF .deps/tif_zip.Tpo -c tif_zip.c  -fPIC -DPIC -o .libs/tif_zip.o
- gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_zip.lo -MD -MP -MF .deps/tif_zip.Tpo -c tif_zip.c -o tif_zip.o >/dev/null 2>&1
-/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o libtiff.la -rpath /usr/local/lib -no-undefined -version-number 3:7:4  tif_aux.lo tif_close.lo tif_codec.lo tif_color.lo tif_compress.lo tif_dir.lo tif_dirinfo.lo tif_dirread.lo tif_dirwrite.lo tif_dumpmode.lo tif_error.lo tif_extension.lo tif_fax3.lo tif_fax3sm.lo tif_flush.lo tif_getimage.lo tif_jpeg.lo tif_luv.lo tif_lzw.lo tif_next.lo tif_ojpeg.lo tif_open.lo tif_packbits.lo tif_pixarlog.lo tif_predict.lo tif_print.lo tif_read.lo tif_strip.lo tif_swab.lo tif_thunder.lo tif_tile.lo tif_unix.lo tif_version.lo tif_warning.lo tif_write.lo tif_zip.lo ../port/libport.la -lm -lc 
-gcc -shared  .libs/tif_aux.o .libs/tif_close.o .libs/tif_codec.o .libs/tif_color.o .libs/tif_compress.o .libs/tif_dir.o .libs/tif_dirinfo.o .libs/tif_dirread.o .libs/tif_dirwrite.o .libs/tif_dumpmode.o .libs/tif_error.o .libs/tif_extension.o .libs/tif_fax3.o .libs/tif_fax3sm.o .libs/tif_flush.o .libs/tif_getimage.o .libs/tif_jpeg.o .libs/tif_luv.o .libs/tif_lzw.o .libs/tif_next.o .libs/tif_ojpeg.o .libs/tif_open.o .libs/tif_packbits.o .libs/tif_pixarlog.o .libs/tif_predict.o .libs/tif_print.o .libs/tif_read.o .libs/tif_strip.o .libs/tif_swab.o .libs/tif_thunder.o .libs/tif_tile.o .libs/tif_unix.o .libs/tif_version.o .libs/tif_warning.o .libs/tif_write.o .libs/tif_zip.o -Wl,--whole-archive ../port/.libs/libport.a -Wl,--no-whole-archive  -lm -lc  -m32 -m32 -Wl,-soname -Wl,libtiff.so.3 -o .libs/libtiff.so.3.7.4
-(cd .libs && rm -f libtiff.so.3 && ln -s libtiff.so.3.7.4 libtiff.so.3)
-(cd .libs && rm -f libtiff.so && ln -s libtiff.so.3.7.4 libtiff.so)
-rm -fr .libs/libtiff.lax
-mkdir .libs/libtiff.lax
-rm -fr .libs/libtiff.lax/libport.a
-mkdir .libs/libtiff.lax/libport.a
-(cd .libs/libtiff.lax/libport.a && ar x /experiment/src/libtiff/../port/.libs/libport.a)
-ar cru .libs/libtiff.a  tif_aux.o tif_close.o tif_codec.o tif_color.o tif_compress.o tif_dir.o tif_dirinfo.o tif_dirread.o tif_dirwrite.o tif_dumpmode.o tif_error.o tif_extension.o tif_fax3.o tif_fax3sm.o tif_flush.o tif_getimage.o tif_jpeg.o tif_luv.o tif_lzw.o tif_next.o tif_ojpeg.o tif_open.o tif_packbits.o tif_pixarlog.o tif_predict.o tif_print.o tif_read.o tif_strip.o tif_swab.o tif_thunder.o tif_tile.o tif_unix.o tif_version.o tif_warning.o tif_write.o tif_zip.o  .libs/libtiff.lax/libport.a/dummy.o 
-ranlib .libs/libtiff.a
-rm -fr .libs/libtiff.lax
-creating libtiff.la
-(cd .libs && rm -f libtiff.la && ln -s ../libtiff.la libtiff.la)
-if /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -MT tif_stream.lo -MD -MP -MF ".deps/tif_stream.Tpo" -c -o tif_stream.lo tif_stream.cxx; \
-	then mv -f ".deps/tif_stream.Tpo" ".deps/tif_stream.Plo"; else rm -f ".deps/tif_stream.Tpo"; exit 1; fi
- g++ -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -MT tif_stream.lo -MD -MP -MF .deps/tif_stream.Tpo -c tif_stream.cxx  -fPIC -DPIC -o .libs/tif_stream.o
-In file included from tiffiop.h:61:0,
-                 from tif_stream.cxx:30:
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
- };
- ^
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
- };
- ^
-tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
-tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
- g++ -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -MT tif_stream.lo -MD -MP -MF .deps/tif_stream.Tpo -c tif_stream.cxx -o tif_stream.o >/dev/null 2>&1
-/bin/sh ../libtool --tag=CXX --mode=link g++  -m32  -m32 -o libtiffxx.la -rpath /usr/local/lib -no-undefined -version-number 3:7:4  tif_stream.lo ../libtiff/libtiff.la ../port/libport.la -lm -lc 
-g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib32/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.8/32/crtbeginS.o  .libs/tif_stream.o -Wl,--whole-archive ../port/.libs/libport.a -Wl,--no-whole-archive  -Wl,--rpath -Wl,/experiment/src/libtiff/.libs ../libtiff/.libs/libtiff.so -L/usr/lib/gcc/x86_64-linux-gnu/4.8/32 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib32 -L/lib/../lib32 -L/usr/lib/../lib32 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.8/32/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib32/crtn.o  -m32 -m32 -Wl,-soname -Wl,libtiffxx.so.3 -o .libs/libtiffxx.so.3.7.4
-(cd .libs && rm -f libtiffxx.so.3 && ln -s libtiffxx.so.3.7.4 libtiffxx.so.3)
-(cd .libs && rm -f libtiffxx.so && ln -s libtiffxx.so.3.7.4 libtiffxx.so)
-rm -fr .libs/libtiffxx.lax
-mkdir .libs/libtiffxx.lax
-rm -fr .libs/libtiffxx.lax/libport.a
-mkdir .libs/libtiffxx.lax/libport.a
-(cd .libs/libtiffxx.lax/libport.a && ar x /experiment/src/libtiff/../port/.libs/libport.a)
-ar cru .libs/libtiffxx.a  tif_stream.o  .libs/libtiffxx.lax/libport.a/dummy.o 
-ranlib .libs/libtiffxx.a
-rm -fr .libs/libtiffxx.lax
-creating libtiffxx.la
-(cd .libs && rm -f libtiffxx.la && ln -s ../libtiffxx.la libtiffxx.la)
-if gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT mkg3states.o -MD -MP -MF ".deps/mkg3states.Tpo" -c -o mkg3states.o mkg3states.c; \
-	then mv -f ".deps/mkg3states.Tpo" ".deps/mkg3states.Po"; else rm -f ".deps/mkg3states.Tpo"; exit 1; fi
-/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o mkg3states  mkg3states.o ../port/libport.la -lm -lc 
-gcc -m32 -Wall -m32 -o mkg3states mkg3states.o  ../port/.libs/libport.a -lm -lc
-make[2]: Leaving directory `/experiment/src/libtiff'
-make[1]: Leaving directory `/experiment/src/libtiff'
-Making all in tools
-make[1]: Entering directory `/experiment/src/tools'
-if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT bmp2tiff.o -MD -MP -MF ".deps/bmp2tiff.Tpo" -c -o bmp2tiff.o bmp2tiff.c; \
-	then mv -f ".deps/bmp2tiff.Tpo" ".deps/bmp2tiff.Po"; else rm -f ".deps/bmp2tiff.Tpo"; exit 1; fi
-/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o bmp2tiff  bmp2tiff.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
-mkdir .libs
-gcc -m32 -Wall -m32 -o .libs/bmp2tiff bmp2tiff.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
-creating bmp2tiff
-if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT fax2ps.o -MD -MP -MF ".deps/fax2ps.Tpo" -c -o fax2ps.o fax2ps.c; \
-	then mv -f ".deps/fax2ps.Tpo" ".deps/fax2ps.Po"; else rm -f ".deps/fax2ps.Tpo"; exit 1; fi
-/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o fax2ps  fax2ps.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
-gcc -m32 -Wall -m32 -o .libs/fax2ps fax2ps.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
-creating fax2ps
-if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT fax2tiff.o -MD -MP -MF ".deps/fax2tiff.Tpo" -c -o fax2tiff.o fax2tiff.c; \
-	then mv -f ".deps/fax2tiff.Tpo" ".deps/fax2tiff.Po"; else rm -f ".deps/fax2tiff.Tpo"; exit 1; fi
-/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o fax2tiff  fax2tiff.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
-gcc -m32 -Wall -m32 -o .libs/fax2tiff fax2tiff.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
-creating fax2tiff
-if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT gif2tiff.o -MD -MP -MF ".deps/gif2tiff.Tpo" -c -o gif2tiff.o gif2tiff.c; \
-	then mv -f ".deps/gif2tiff.Tpo" ".deps/gif2tiff.Po"; else rm -f ".deps/gif2tiff.Tpo"; exit 1; fi
-/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o gif2tiff  gif2tiff.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
-gcc -m32 -Wall -m32 -o .libs/gif2tiff gif2tiff.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
-creating gif2tiff
-if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT pal2rgb.o -MD -MP -MF ".deps/pal2rgb.Tpo" -c -o pal2rgb.o pal2rgb.c; \
-	then mv -f ".deps/pal2rgb.Tpo" ".deps/pal2rgb.Po"; else rm -f ".deps/pal2rgb.Tpo"; exit 1; fi
-/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o pal2rgb  pal2rgb.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
-gcc -m32 -Wall -m32 -o .libs/pal2rgb pal2rgb.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
-creating pal2rgb
-if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT ppm2tiff.o -MD -MP -MF ".deps/ppm2tiff.Tpo" -c -o ppm2tiff.o ppm2tiff.c; \
-	then mv -f ".deps/ppm2tiff.Tpo" ".deps/ppm2tiff.Po"; else rm -f ".deps/ppm2tiff.Tpo"; exit 1; fi
-/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o ppm2tiff  ppm2tiff.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
-gcc -m32 -Wall -m32 -o .libs/ppm2tiff ppm2tiff.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
-creating ppm2tiff
-if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT ras2tiff.o -MD -MP -MF ".deps/ras2tiff.Tpo" -c -o ras2tiff.o ras2tiff.c; \
-	then mv -f ".deps/ras2tiff.Tpo" ".deps/ras2tiff.Po"; else rm -f ".deps/ras2tiff.Tpo"; exit 1; fi
-/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o ras2tiff  ras2tiff.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
-gcc -m32 -Wall -m32 -o .libs/ras2tiff ras2tiff.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
-creating ras2tiff
-if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT raw2tiff.o -MD -MP -MF ".deps/raw2tiff.Tpo" -c -o raw2tiff.o raw2tiff.c; \
-	then mv -f ".deps/raw2tiff.Tpo" ".deps/raw2tiff.Po"; else rm -f ".deps/raw2tiff.Tpo"; exit 1; fi
-/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o raw2tiff  raw2tiff.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
-gcc -m32 -Wall -m32 -o .libs/raw2tiff raw2tiff.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
-creating raw2tiff
-if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT rgb2ycbcr.o -MD -MP -MF ".deps/rgb2ycbcr.Tpo" -c -o rgb2ycbcr.o rgb2ycbcr.c; \
-	then mv -f ".deps/rgb2ycbcr.Tpo" ".deps/rgb2ycbcr.Po"; else rm -f ".deps/rgb2ycbcr.Tpo"; exit 1; fi
-/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o rgb2ycbcr  rgb2ycbcr.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
-gcc -m32 -Wall -m32 -o .libs/rgb2ycbcr rgb2ycbcr.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
-creating rgb2ycbcr
-if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT thumbnail.o -MD -MP -MF ".deps/thumbnail.Tpo" -c -o thumbnail.o thumbnail.c; \
-	then mv -f ".deps/thumbnail.Tpo" ".deps/thumbnail.Po"; else rm -f ".deps/thumbnail.Tpo"; exit 1; fi
-/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o thumbnail  thumbnail.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
-gcc -m32 -Wall -m32 -o .libs/thumbnail thumbnail.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
-creating thumbnail
-if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT tiff2bw.o -MD -MP -MF ".deps/tiff2bw.Tpo" -c -o tiff2bw.o tiff2bw.c; \
-	then mv -f ".deps/tiff2bw.Tpo" ".deps/tiff2bw.Po"; else rm -f ".deps/tiff2bw.Tpo"; exit 1; fi
-/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o tiff2bw  tiff2bw.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
-gcc -m32 -Wall -m32 -o .libs/tiff2bw tiff2bw.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
-creating tiff2bw
-if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT tiff2pdf.o -MD -MP -MF ".deps/tiff2pdf.Tpo" -c -o tiff2pdf.o tiff2pdf.c; \
-	then mv -f ".deps/tiff2pdf.Tpo" ".deps/tiff2pdf.Po"; else rm -f ".deps/tiff2pdf.Tpo"; exit 1; fi
-tiff2pdf.c: In function 'main':
-tiff2pdf.c:528:10: warning: variable 'written' set but not used [-Wunused-but-set-variable]
-  tsize_t written=0;
-          ^
-tiff2pdf.c: In function 't2p_readwrite_pdf_image_tile':
-tiff2pdf.c:2675:10: warning: variable 'tilesize' set but not used [-Wunused-but-set-variable]
-  tsize_t tilesize=0;
-          ^
-tiff2pdf.c: In function 't2p_write_pdf_info':
-tiff2pdf.c:3947:6: warning: variable 'buflen' set but not used [-Wunused-but-set-variable]
-  int buflen=0;
-      ^
-/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o tiff2pdf  tiff2pdf.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
-gcc -m32 -Wall -m32 -o .libs/tiff2pdf tiff2pdf.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
-creating tiff2pdf
-if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT tiff2ps.o -MD -MP -MF ".deps/tiff2ps.Tpo" -c -o tiff2ps.o tiff2ps.c; \
-	then mv -f ".deps/tiff2ps.Tpo" ".deps/tiff2ps.Po"; else rm -f ".deps/tiff2ps.Tpo"; exit 1; fi
-/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o tiff2ps  tiff2ps.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
-gcc -m32 -Wall -m32 -o .libs/tiff2ps tiff2ps.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
-creating tiff2ps
-if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT tiff2rgba.o -MD -MP -MF ".deps/tiff2rgba.Tpo" -c -o tiff2rgba.o tiff2rgba.c; \
-	then mv -f ".deps/tiff2rgba.Tpo" ".deps/tiff2rgba.Po"; else rm -f ".deps/tiff2rgba.Tpo"; exit 1; fi
-/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o tiff2rgba  tiff2rgba.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
-gcc -m32 -Wall -m32 -o .libs/tiff2rgba tiff2rgba.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
-creating tiff2rgba
-if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT tiffcmp.o -MD -MP -MF ".deps/tiffcmp.Tpo" -c -o tiffcmp.o tiffcmp.c; \
-	then mv -f ".deps/tiffcmp.Tpo" ".deps/tiffcmp.Po"; else rm -f ".deps/tiffcmp.Tpo"; exit 1; fi
-tiffcmp.c: In function 'CheckLongTag':
-tiffcmp.c:605:2: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'uint32' [-Wformat=]
-  CHECK(v1 == v2, "%s: %lu %lu\n");
-  ^
-tiffcmp.c:605:2: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'uint32' [-Wformat=]
-/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o tiffcmp  tiffcmp.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
-gcc -m32 -Wall -m32 -o .libs/tiffcmp tiffcmp.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
-creating tiffcmp
-if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT tiffcp.o -MD -MP -MF ".deps/tiffcp.Tpo" -c -o tiffcp.o tiffcp.c; \
-	then mv -f ".deps/tiffcp.Tpo" ".deps/tiffcp.Po"; else rm -f ".deps/tiffcp.Tpo"; exit 1; fi
-/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o tiffcp  tiffcp.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
-gcc -m32 -Wall -m32 -o .libs/tiffcp tiffcp.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
-creating tiffcp
-if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT tiffdither.o -MD -MP -MF ".deps/tiffdither.Tpo" -c -o tiffdither.o tiffdither.c; \
-	then mv -f ".deps/tiffdither.Tpo" ".deps/tiffdither.Po"; else rm -f ".deps/tiffdither.Tpo"; exit 1; fi
-/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o tiffdither  tiffdither.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
-gcc -m32 -Wall -m32 -o .libs/tiffdither tiffdither.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
-creating tiffdither
-if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT tiffdump.o -MD -MP -MF ".deps/tiffdump.Tpo" -c -o tiffdump.o tiffdump.c; \
-	then mv -f ".deps/tiffdump.Tpo" ".deps/tiffdump.Po"; else rm -f ".deps/tiffdump.Tpo"; exit 1; fi
-/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o tiffdump  tiffdump.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
-gcc -m32 -Wall -m32 -o .libs/tiffdump tiffdump.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
-creating tiffdump
-if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT tiffinfo.o -MD -MP -MF ".deps/tiffinfo.Tpo" -c -o tiffinfo.o tiffinfo.c; \
-	then mv -f ".deps/tiffinfo.Tpo" ".deps/tiffinfo.Po"; else rm -f ".deps/tiffinfo.Tpo"; exit 1; fi
-/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o tiffinfo  tiffinfo.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
-gcc -m32 -Wall -m32 -o .libs/tiffinfo tiffinfo.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
-creating tiffinfo
-if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT tiffmedian.o -MD -MP -MF ".deps/tiffmedian.Tpo" -c -o tiffmedian.o tiffmedian.c; \
-	then mv -f ".deps/tiffmedian.Tpo" ".deps/tiffmedian.Po"; else rm -f ".deps/tiffmedian.Tpo"; exit 1; fi
-/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o tiffmedian  tiffmedian.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
-gcc -m32 -Wall -m32 -o .libs/tiffmedian tiffmedian.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
-creating tiffmedian
-if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT tiffset.o -MD -MP -MF ".deps/tiffset.Tpo" -c -o tiffset.o tiffset.c; \
-	then mv -f ".deps/tiffset.Tpo" ".deps/tiffset.Po"; else rm -f ".deps/tiffset.Tpo"; exit 1; fi
-/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o tiffset  tiffset.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
-gcc -m32 -Wall -m32 -o .libs/tiffset tiffset.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
-creating tiffset
-if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT tiffsplit.o -MD -MP -MF ".deps/tiffsplit.Tpo" -c -o tiffsplit.o tiffsplit.c; \
-	then mv -f ".deps/tiffsplit.Tpo" ".deps/tiffsplit.Po"; else rm -f ".deps/tiffsplit.Tpo"; exit 1; fi
-/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o tiffsplit  tiffsplit.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
-gcc -m32 -Wall -m32 -o .libs/tiffsplit tiffsplit.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
-creating tiffsplit
-make[1]: Leaving directory `/experiment/src/tools'
-Making all in contrib
-make[1]: Entering directory `/experiment/src/contrib'
-Making all in acorn
-make[2]: Entering directory `/experiment/src/contrib/acorn'
-make[2]: Nothing to be done for `all'.
-make[2]: Leaving directory `/experiment/src/contrib/acorn'
-Making all in addtiffo
-make[2]: Entering directory `/experiment/src/contrib/addtiffo'
-if gcc -DHAVE_CONFIG_H -I. -I. -I../../libtiff -I../../libtiff -I../../libtiff    -m32 -Wall -MT addtiffo.o -MD -MP -MF ".deps/addtiffo.Tpo" -c -o addtiffo.o addtiffo.c; \
-	then mv -f ".deps/addtiffo.Tpo" ".deps/addtiffo.Po"; else rm -f ".deps/addtiffo.Tpo"; exit 1; fi
-if gcc -DHAVE_CONFIG_H -I. -I. -I../../libtiff -I../../libtiff -I../../libtiff    -m32 -Wall -MT tif_overview.o -MD -MP -MF ".deps/tif_overview.Tpo" -c -o tif_overview.o tif_overview.c; \
-	then mv -f ".deps/tif_overview.Tpo" ".deps/tif_overview.Po"; else rm -f ".deps/tif_overview.Tpo"; exit 1; fi
-if gcc -DHAVE_CONFIG_H -I. -I. -I../../libtiff -I../../libtiff -I../../libtiff    -m32 -Wall -MT tif_ovrcache.o -MD -MP -MF ".deps/tif_ovrcache.Tpo" -c -o tif_ovrcache.o tif_ovrcache.c; \
-	then mv -f ".deps/tif_ovrcache.Tpo" ".deps/tif_ovrcache.Po"; else rm -f ".deps/tif_ovrcache.Tpo"; exit 1; fi
-/bin/sh ../../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o addtiffo  addtiffo.o tif_overview.o tif_ovrcache.o ../../libtiff/libtiff.la -lm -lc 
-mkdir .libs
-gcc -m32 -Wall -m32 -o .libs/addtiffo addtiffo.o tif_overview.o tif_ovrcache.o  ../../libtiff/.libs/libtiff.so -lm -lc
-creating addtiffo
-make[2]: Leaving directory `/experiment/src/contrib/addtiffo'
-Making all in dbs
-make[2]: Entering directory `/experiment/src/contrib/dbs'
-Making all in xtiff
-make[3]: Entering directory `/experiment/src/contrib/dbs/xtiff'
-make[3]: Nothing to be done for `all'.
-make[3]: Leaving directory `/experiment/src/contrib/dbs/xtiff'
-make[3]: Entering directory `/experiment/src/contrib/dbs'
-if gcc -DHAVE_CONFIG_H -I. -I. -I../../libtiff -I../../libtiff -I../../libtiff    -m32 -Wall -MT tiff-bi.o -MD -MP -MF ".deps/tiff-bi.Tpo" -c -o tiff-bi.o tiff-bi.c; \
-	then mv -f ".deps/tiff-bi.Tpo" ".deps/tiff-bi.Po"; else rm -f ".deps/tiff-bi.Tpo"; exit 1; fi
-/bin/sh ../../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o tiff-bi  tiff-bi.o ../../libtiff/libtiff.la -lm -lc 
-mkdir .libs
-gcc -m32 -Wall -m32 -o .libs/tiff-bi tiff-bi.o  ../../libtiff/.libs/libtiff.so -lm -lc
-creating tiff-bi
-if gcc -DHAVE_CONFIG_H -I. -I. -I../../libtiff -I../../libtiff -I../../libtiff    -m32 -Wall -MT tiff-grayscale.o -MD -MP -MF ".deps/tiff-grayscale.Tpo" -c -o tiff-grayscale.o tiff-grayscale.c; \
-	then mv -f ".deps/tiff-grayscale.Tpo" ".deps/tiff-grayscale.Po"; else rm -f ".deps/tiff-grayscale.Tpo"; exit 1; fi
-/bin/sh ../../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o tiff-grayscale  tiff-grayscale.o ../../libtiff/libtiff.la -lm -lc 
-gcc -m32 -Wall -m32 -o .libs/tiff-grayscale tiff-grayscale.o  ../../libtiff/.libs/libtiff.so -lm -lc
-creating tiff-grayscale
-if gcc -DHAVE_CONFIG_H -I. -I. -I../../libtiff -I../../libtiff -I../../libtiff    -m32 -Wall -MT tiff-palette.o -MD -MP -MF ".deps/tiff-palette.Tpo" -c -o tiff-palette.o tiff-palette.c; \
-	then mv -f ".deps/tiff-palette.Tpo" ".deps/tiff-palette.Po"; else rm -f ".deps/tiff-palette.Tpo"; exit 1; fi
-/bin/sh ../../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o tiff-palette  tiff-palette.o ../../libtiff/libtiff.la -lm -lc 
-gcc -m32 -Wall -m32 -o .libs/tiff-palette tiff-palette.o  ../../libtiff/.libs/libtiff.so -lm -lc
-creating tiff-palette
-if gcc -DHAVE_CONFIG_H -I. -I. -I../../libtiff -I../../libtiff -I../../libtiff    -m32 -Wall -MT tiff-rgb.o -MD -MP -MF ".deps/tiff-rgb.Tpo" -c -o tiff-rgb.o tiff-rgb.c; \
-	then mv -f ".deps/tiff-rgb.Tpo" ".deps/tiff-rgb.Po"; else rm -f ".deps/tiff-rgb.Tpo"; exit 1; fi
-/bin/sh ../../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o tiff-rgb  tiff-rgb.o ../../libtiff/libtiff.la -lm -lc 
-gcc -m32 -Wall -m32 -o .libs/tiff-rgb tiff-rgb.o  ../../libtiff/.libs/libtiff.so -lm -lc
-creating tiff-rgb
-make[3]: Leaving directory `/experiment/src/contrib/dbs'
-make[2]: Leaving directory `/experiment/src/contrib/dbs'
-Making all in iptcutil
-make[2]: Entering directory `/experiment/src/contrib/iptcutil'
-if gcc -DHAVE_CONFIG_H -I. -I. -I../../libtiff -I../../libtiff -I../../libtiff    -m32 -Wall -MT iptcutil.o -MD -MP -MF ".deps/iptcutil.Tpo" -c -o iptcutil.o iptcutil.c; \
-	then mv -f ".deps/iptcutil.Tpo" ".deps/iptcutil.Po"; else rm -f ".deps/iptcutil.Tpo"; exit 1; fi
-iptcutil.c: In function 'main':
-iptcutil.c:388:7: warning: format not a string literal and no format arguments [-Wformat-security]
-       printf(usage);
-       ^
-iptcutil.c:447:9: warning: format not a string literal and no format arguments [-Wformat-security]
-         printf(usage);
-         ^
-iptcutil.c:372:6: warning: variable 'buffer' set but not used [-Wunused-but-set-variable]
-     *buffer;
-      ^
-iptcutil.c:369:5: warning: variable 'length' set but not used [-Wunused-but-set-variable]
-     length;
-     ^
-/bin/sh ../../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o iptcutil  iptcutil.o ../../libtiff/libtiff.la -lm -lc 
-mkdir .libs
-gcc -m32 -Wall -m32 -o .libs/iptcutil iptcutil.o  ../../libtiff/.libs/libtiff.so -lm -lc
-creating iptcutil
-make[2]: Leaving directory `/experiment/src/contrib/iptcutil'
-Making all in mac-cw
-make[2]: Entering directory `/experiment/src/contrib/mac-cw'
-make[2]: Nothing to be done for `all'.
-make[2]: Leaving directory `/experiment/src/contrib/mac-cw'
-Making all in mac-mpw
-make[2]: Entering directory `/experiment/src/contrib/mac-mpw'
-make[2]: Nothing to be done for `all'.
-make[2]: Leaving directory `/experiment/src/contrib/mac-mpw'
-Making all in mfs
-make[2]: Entering directory `/experiment/src/contrib/mfs'
-make[2]: Nothing to be done for `all'.
-make[2]: Leaving directory `/experiment/src/contrib/mfs'
-Making all in ojpeg
-make[2]: Entering directory `/experiment/src/contrib/ojpeg'
-make[2]: Nothing to be done for `all'.
-make[2]: Leaving directory `/experiment/src/contrib/ojpeg'
-Making all in pds
-make[2]: Entering directory `/experiment/src/contrib/pds'
-make[2]: Nothing to be done for `all'.
-make[2]: Leaving directory `/experiment/src/contrib/pds'
-Making all in ras
-make[2]: Entering directory `/experiment/src/contrib/ras'
-make[2]: Nothing to be done for `all'.
-make[2]: Leaving directory `/experiment/src/contrib/ras'
-Making all in stream
-make[2]: Entering directory `/experiment/src/contrib/stream'
-make[2]: Nothing to be done for `all'.
-make[2]: Leaving directory `/experiment/src/contrib/stream'
-Making all in tags
-make[2]: Entering directory `/experiment/src/contrib/tags'
-make[2]: Nothing to be done for `all'.
-make[2]: Leaving directory `/experiment/src/contrib/tags'
-Making all in win_dib
-make[2]: Entering directory `/experiment/src/contrib/win_dib'
-make[2]: Nothing to be done for `all'.
-make[2]: Leaving directory `/experiment/src/contrib/win_dib'
-make[2]: Entering directory `/experiment/src/contrib'
-make[2]: Nothing to be done for `all-am'.
-make[2]: Leaving directory `/experiment/src/contrib'
-make[1]: Leaving directory `/experiment/src/contrib'
-Making all in test
-make[1]: Entering directory `/experiment/src/test'
-make[1]: Nothing to be done for `all'.
-make[1]: Leaving directory `/experiment/src/test'
-Making all in man
-make[1]: Entering directory `/experiment/src/man'
-make[1]: Nothing to be done for `all'.
-make[1]: Leaving directory `/experiment/src/man'
-Making all in html
-make[1]: Entering directory `/experiment/src/html'
-Making all in images
-make[2]: Entering directory `/experiment/src/html/images'
-make[2]: Nothing to be done for `all'.
-make[2]: Leaving directory `/experiment/src/html/images'
-Making all in man
-make[2]: Entering directory `/experiment/src/html/man'
-make[2]: Nothing to be done for `all'.
-make[2]: Leaving directory `/experiment/src/html/man'
-make[2]: Entering directory `/experiment/src/html'
-make[2]: Nothing to be done for `all-am'.
-make[2]: Leaving directory `/experiment/src/html'
-make[1]: Leaving directory `/experiment/src/html'
-make[1]: Entering directory `/experiment/src'
-make[1]: Nothing to be done for `all-am'.
-make[1]: Leaving directory `/experiment/src'

python/data/tests-list/lighttpd/README.md

@@ -1,27 +0,0 @@
-## Running `lighttpd` bugs
-
-After running the container you need to follow the following
-steps to prepare `SOSRepair` for running:
-
-1. Copy `makeout`, `compile.sh`, `test.sh` and `tests-list` to
-the container's `/experiment/`.
-2. Copy `settings.py` to the container's `/opt/sosrepair/sosrepair`.
-3. In the container, reconfigure the project with coverage flags:
-```
-cd /experiment/src
-./configure "CFLAGS=-fprofile-arcs -ftest-coverage" "CXXFLAGS=-fprofile-arcs -ftest-coverage" "LDFLAGS=-lgcov" --with-ldap --with-bzip2 --with-openssl --with-gdbm --with-memcache --with-webdav-props --with-webdav-locks
-make clean
-make
-```
-4. Run `/opt/sosrepair/prepare/setup.sh`.
-5. Set proper permissions by running `sudo chmod -R 777 /opt/sosrepair/sosrepair`.
-6. Setup environment variables:
-```
-export PYTHONPATH="/opt/sosrepair/bindings:${PYTHONPATH}"
-export CPATH=":/opt/sosrepair/include"
-export PATH="/opt/sosrepair/bin:$PATH"
-```
-
-Pay attention that `lighttpd` tests occupy a single port. Therefore, you can only
-run on a single bug at a time if you're sharing ports. Otherwise, the tests will
-fail.

python/data/tests-list/lighttpd/compile.sh

@@ -1,8 +0,0 @@
-#!/bin/bash
-DIR=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
-
-cd $DIR/src
-#make clean
-(make && exit 0)|| exit 1
-
-

python/data/tests-list/lighttpd/copy.sh

@@ -1,10 +0,0 @@
-#!/bin/bash
-
-
-CONTAINER=$1
-BUG=$2
-
-docker cp compile.sh $CONTAINER:/experiment/
-docker cp $BUG/test.sh $CONTAINER:/experiment/
-docker cp $BUG/tests-list.txt $CONTAINER:/experiment/
-docker cp $BUG/settings.py $CONTAINER:/opt/sosrepair/sosrepair/

python/data/tests-list/lighttpd/lighttpd-bug-1913-1914/settings.py

@@ -1,86 +0,0 @@
-"""
-This file includes all the settings that could be modified for running SearchRepair/SOSRepair
-
-* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
-* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
- DB
-* Z3_COMMAND: The z3 command on this machine.
-* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
-* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
-* DATABASE: Information about the database.
-* LOGGING: Settings for logging.
-* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
-* VALID_TYPES: The variable types that are right now supported by SR.
------- Settings related to file under repair -------
-* TESTS_LIST: The path to a list of the tests that could be run on the file
-* TEST_SCRIPT: The path to a script that will run the test
-* COMPILE_SCRIPT: The path to a script that will compile the code
-* FAULTY_CODE: The path to the faulty code (a C file)
-* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
-* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
-automatically)
-* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
-* SOSREPAIR: If set to False it will only run SearchRepair features
-* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
-* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
-"""
-__author__ = 'Afsoon Afzal'
-
-import logging
-
-
-LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
-
-GENERATE_DB_PATH = '/experiment/src'
-
-Z3_COMMAND = '/opt/sosrepair/bin/z3'
-
-LARGEST_SNIPPET = 7
-SMALLEST_SNIPPET = 3
-
-DATABASE = {
-    'db_name': 'testdocker',
-    'user': 'docker',
-    'password': '1234',
-}
-
-LOGGING = {
-    'filename': 'logs/repair.log',
-    'level': logging.DEBUG
-}
-
-logging.basicConfig(**LOGGING)
-
-MAX_SUSPICIOUS_LINES = 10
-
-VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
-
-TESTS_LIST = "/experiment/tests-list.txt"
-TEST_SCRIPT = "/experiment/test.sh"
-TEST_SCRIPT_TYPE = "/bin/bash"
-COMPILE_SCRIPT = "/experiment/compile.sh"
-FAULTY_CODE = "/experiment/src/src/mod_cgi.c"
-
-
-COMPILE_EXTRA_ARGS = [
-                    "-I/experiment/src",
-#                    "-I/usr/include",
-                    "-I/usr/include/glib-2.0",
-                    "-I/usr/lib/x86_64-linux-gnu/glib-2.0/include",
-                    "-I/opt/sosrepair/llvm/lib/clang/5.0.2/include"
-]
-
-MAKE_OUTPUT = "/experiment/makeout"
-
-METHOD_RANGE = (584, 918)
-# IF SOS+
-# METHOD_RANGE = (747, 749)
-
-SOSREPAIR = True
-
-NUMBER_OF_TIMES_RERUNNING_TESTS = 1
-EXCLUDE_SCANF = False
-
-BULK_RUN_PATH = ""
-
-GCOV_OBJECTS = "/experiment/src/src/.libs"

python/data/tests-list/lighttpd/lighttpd-bug-1913-1914/test.sh

@@ -1,52 +0,0 @@
-#!/bin/bash
-bugrev=1913
-dir=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd ) 
-
-#Check if coverage is being run. If so, don't use time limit.
-#if [ `basename $2` = "coverage" ] ; then
-#    cov=0
-#else
-cov=0
-#fi
-
-run_test()
-{
-    cd $dir/src/tests
-    if [ $cov -eq 0 ] ; then
-        perl /experiment/lighttpd-run-tests.pl $1
-    else
-        timeout 5 perl /experiment/lighttpd-run-tests.pl $1
-    fi
-    RESULT=$?
-    if [ $RESULT = 0 ] ; then 
-	echo ""
-	echo "PASS"
-    else
-	echo ""
-	echo "FAIL"
-    fi
-    killall -9 lighttpd &> /dev/null
-    cd ../../
-    return 0
-}
-case $1 in
-    p1) run_test 1 && exit 0 ;; 
-    p2) run_test 2 && exit 0 ;; 
-    p3) run_test 3 && exit 0 ;; 
-    p4) run_test 4 && exit 0 ;; 
-    p5) run_test 6 && exit 0 ;; 
-    p6) run_test 7 && exit 0 ;; 
-    p7) run_test 8 && exit 0 ;; 
-    p8) run_test 10 && exit 0 ;; 
-    p9) run_test 11 && exit 0 ;; 
-    p10) run_test 12 && exit 0 ;; 
-    p11) run_test 14 && exit 0 ;; 
-    p12) run_test 15 && exit 0 ;; 
-    p13) run_test 16 && exit 0 ;; 
-    p14) run_test 17 && exit 0 ;; 
-    p15) run_test 18 && exit 0 ;; 
-    p16) run_test 20 && exit 0 ;; 
-    p17) run_test 21 && exit 0 ;; 
-    n1) run_test 9 && exit 0 ;; 
-esac
-exit 1

python/data/tests-list/lighttpd/lighttpd-bug-1913-1914/tests-list.txt

@@ -1,17 +0,0 @@
-n1
-p1
-p2
-p3
-p4
-p5
-p6
-p7
-p8
-p9
-p10
-p12
-p13
-p14
-p15
-p16
-p17

python/data/tests-list/lighttpd/lighttpd-bug-1948-1949/settings.py

@@ -1,82 +0,0 @@
-"""
-This file includes all the settings that could be modified for running SearchRepair/SOSRepair
-
-* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
-* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
- DB
-* Z3_COMMAND: The z3 command on this machine.
-* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
-* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
-* DATABASE: Information about the database.
-* LOGGING: Settings for logging.
-* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
-* VALID_TYPES: The variable types that are right now supported by SR.
------- Settings related to file under repair -------
-* TESTS_LIST: The path to a list of the tests that could be run on the file
-* TEST_SCRIPT: The path to a script that will run the test
-* COMPILE_SCRIPT: The path to a script that will compile the code
-* FAULTY_CODE: The path to the faulty code (a C file)
-* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
-* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
-automatically)
-* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
-* SOSREPAIR: If set to False it will only run SearchRepair features
-* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
-* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
-"""
-__author__ = 'Afsoon Afzal'
-
-import logging
-
-
-LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
-
-GENERATE_DB_PATH = '/experiment/src'
-
-Z3_COMMAND = '/opt/sosrepair/bin/z3'
-
-LARGEST_SNIPPET = 7
-SMALLEST_SNIPPET = 3
-
-DATABASE = {
-    'db_name': 'testdocker',
-    'user': 'docker',
-    'password': '1234'
-}
-
-LOGGING = {
-    'filename': 'logs/repair.log',
-    'level': logging.DEBUG
-}
-
-logging.basicConfig(**LOGGING)
-
-MAX_SUSPICIOUS_LINES = 10
-
-VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
-
-TESTS_LIST = "/experiment/tests-list.txt"
-TEST_SCRIPT = "/experiment/test.sh"
-TEST_SCRIPT_TYPE = "/bin/bash"
-COMPILE_SCRIPT = "/experiment/compile.sh"
-FAULTY_CODE = "/experiment/src/src/response.c"
-
-
-COMPILE_EXTRA_ARGS = [
-                    "-I/experiment/src",
-#                    "-I/usr/include",
-                    "-I/usr/include/glib-2.0",
-                    "-I/usr/lib/x86_64-linux-gnu/glib-2.0/include",
-                    "-I/opt/sosrepair/llvm/lib/clang/5.0.2/include"
-]
-
-MAKE_OUTPUT = "/experiment/makeout"
-
-METHOD_RANGE = (32, 134)
-
-SOSREPAIR = True
-
-NUMBER_OF_TIMES_RERUNNING_TESTS = 1
-EXCLUDE_SCANF = False
-
-BULK_RUN_PATH = ""

python/data/tests-list/lighttpd/lighttpd-bug-1948-1949/test.sh

@@ -1,39 +0,0 @@
-#!/bin/bash
-bugrev=1948
-dir=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
-run_test()
-{
-    cd $dir/src/tests
-    perl ../../lighttpd-run-tests.pl $1
-    if [ $? = 0 ] ; then
-        echo ""
-        echo "PASS"
-    else
-        echo ""
-        echo "FAIL"
-    fi
-    popd > /dev/null
-    killall -9 lighttpd &> /dev/null
-    return 0
-}
-case $1 in
-    p1) run_test 1 && exit 0 ;; 
-    p2) run_test 2 && exit 0 ;; 
-    p3) run_test 3 && exit 0 ;; 
-    p4) run_test 4 && exit 0 ;; 
-    p5) run_test 6 && exit 0 ;; 
-    p6) run_test 7 && exit 0 ;; 
-    p7) run_test 8 && exit 0 ;; 
-    p8) run_test 10 && exit 0 ;; 
-    p9) run_test 11 && exit 0 ;; 
-    p10) run_test 12 && exit 0 ;; 
-    p11) run_test 14 && exit 0 ;; 
-    p12) run_test 15 && exit 0 ;; 
-    p13) run_test 16 && exit 0 ;; 
-    p14) run_test 17 && exit 0 ;; 
-    p15) run_test 18 && exit 0 ;; 
-    p16) run_test 20 && exit 0 ;; 
-    p17) run_test 21 && exit 0 ;; 
-    n1) run_test 19 && exit 0 ;; 
-esac
-exit 1

python/data/tests-list/lighttpd/lighttpd-bug-1948-1949/tests-list.txt

@@ -1,14 +0,0 @@
-n1
-p1
-p2
-p3
-p4
-p5
-p6
-p7
-p8
-p10
-p11
-p13
-p14
-p15

python/data/tests-list/lighttpd/lighttpd-bug-2254-2259/settings.py

@@ -1,86 +0,0 @@
-"""
-This file includes all the settings that could be modified for running SearchRepair/SOSRepair
-
-* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
-* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
- DB
-* Z3_COMMAND: The z3 command on this machine.
-* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
-* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
-* DATABASE: Information about the database.
-* LOGGING: Settings for logging.
-* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
-* VALID_TYPES: The variable types that are right now supported by SR.
------- Settings related to file under repair -------
-* TESTS_LIST: The path to a list of the tests that could be run on the file
-* TEST_SCRIPT: The path to a script that will run the test
-* COMPILE_SCRIPT: The path to a script that will compile the code
-* FAULTY_CODE: The path to the faulty code (a C file)
-* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
-* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
-automatically)
-* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
-* SOSREPAIR: If set to False it will only run SearchRepair features
-* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
-* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
-"""
-__author__ = 'Afsoon Afzal'
-
-import logging
-
-
-LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
-
-GENERATE_DB_PATH = '/experiment/src'
-
-Z3_COMMAND = '/opt/sosrepair/bin/z3'
-
-LARGEST_SNIPPET = 7
-SMALLEST_SNIPPET = 3
-
-DATABASE = {
-    'db_name': 'testdocker',
-    'user': 'docker',
-    'password': '1234'
-}
-
-LOGGING = {
-    'filename': 'logs/repair.log',
-    'level': logging.DEBUG
-}
-
-logging.basicConfig(**LOGGING)
-
-MAX_SUSPICIOUS_LINES = 10
-
-VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
-
-TESTS_LIST = "/experiment/tests-list.txt"
-TEST_SCRIPT = "/experiment/test.sh"
-TEST_SCRIPT_TYPE = "/bin/bash"
-COMPILE_SCRIPT = "/experiment/compile.sh"
-FAULTY_CODE = "/experiment/src/src/mod_secure_download.c"
-
-
-COMPILE_EXTRA_ARGS = [ 
-                    "-I/experiment/src",
-#                    "-I/usr/include",
-                    "-I/usr/include/glib-2.0",
-                    "-I/usr/lib/x86_64-linux-gnu/glib-2.0/include",
-                    "-I/opt/sosrepair/llvm/lib/clang/5.0.2/include"
-]
-
-MAKE_OUTPUT = "/experiment/makeout"
-
-METHOD_RANGE = (198, 328)
-# IF SOS+
-# METHOD_RANGE = (278, 280)
-
-SOSREPAIR = True
-
-NUMBER_OF_TIMES_RERUNNING_TESTS = 1
-EXCLUDE_SCANF = False
-
-BULK_RUN_PATH = ""
-
-GCOV_OBJECTS = "/experiment/src/src/.libs"

python/data/tests-list/lighttpd/lighttpd-bug-2254-2259/test.sh

@@ -1,40 +0,0 @@
-#!/bin/bash
-bugrev=2254
-dir=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
-run_test()
-{
-    cd $dir/src/tests
-    perl ../../lighttpd-run-tests.pl $1
-    if [ $? = 0 ] ; then
-        echo ""
-        echo "PASS"
-    else
-        echo ""
-        echo "FAIL"
-    fi
-    popd > /dev/null
-    killall -9 lighttpd &> /dev/null
-    return 0
-}
-case $1 in
-    p1) run_test 1 && exit 0 ;; 
-    p2) run_test 2 && exit 0 ;; 
-    p3) run_test 3 && exit 0 ;; 
-    p4) run_test 4 && exit 0 ;; 
-    p5) run_test 6 && exit 0 ;; 
-    p6) run_test 7 && exit 0 ;; 
-    p7) run_test 8 && exit 0 ;; 
-    p8) run_test 9 && exit 0 ;; 
-    p9) run_test 10 && exit 0 ;; 
-    p10) run_test 11 && exit 0 ;; 
-    p11) run_test 12 && exit 0 ;; 
-    p12) run_test 14 && exit 0 ;; 
-    p13) run_test 15 && exit 0 ;; 
-    p14) run_test 16 && exit 0 ;; 
-    p15) run_test 17 && exit 0 ;; 
-    p16) run_test 18 && exit 0 ;; 
-    p17) run_test 20 && exit 0 ;; 
-    p18) run_test 21 && exit 0 ;; 
-    n1) run_test 5 && exit 0 ;; 
-esac
-exit 1

python/data/tests-list/lighttpd/lighttpd-bug-2254-2259/tests-list.txt

@@ -1,16 +0,0 @@
-n1
-p1
-p2
-p3
-p4
-p5
-p6
-p7
-p9
-p11
-p12
-p13
-p14
-p15
-p16
-p17

python/data/tests-list/lighttpd/lighttpd-bug-2661-2662/notes.md

@@ -1,3 +0,0 @@
-For this bug both SOS and SOS+ can generate perfect patch
-but they won't if you return the first patch. If
-`--all_patches` is used the perfect patch will be generated.

python/data/tests-list/lighttpd/lighttpd-bug-2661-2662/test.sh

@@ -1,54 +0,0 @@
-#!/bin/bash
-bugrev=1913
-dir=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd ) 
-
-#Check if coverage is being run. If so, don't use time limit.
-#if [ `basename $2` = "coverage" ] ; then
-#    cov=0
-#else
-cov=0
-#fi
-
-run_test()
-{
-    cd $dir/src/tests
-    if [ $cov -eq 0 ] ; then
-        perl /experiment/lighttpd-run-tests.pl $1
-    else
-        timeout 5 perl /experiment/lighttpd-run-tests.pl $1
-    fi
-    RESULT=$?
-    if [ $RESULT = 0 ] ; then 
-	echo ""
-	echo "PASS"
-    else
-	echo ""
-	echo "FAIL"
-    fi
-    killall -9 lighttpd &> /dev/null
-    cd ../../
-    return 0
-}
-case $1 in
-    p1) run_test 1 && exit 0 ;;
-    p2) run_test 2 && exit 0 ;;
-    p3) run_test 3 && exit 0 ;;
-    p4) run_test 4 && exit 0 ;;
-    p5) run_test 5 && exit 0 ;;
-    p6) run_test 6 && exit 0 ;;
-    p7) run_test 7 && exit 0 ;;
-    p8) run_test 8 && exit 0 ;;
-    p9) run_test 9 && exit 0 ;;
-    p10) run_test 12 && exit 0 ;;
-    p11) run_test 13 && exit 0 ;;
-    p12) run_test 14 && exit 0 ;;
-    p13) run_test 15 && exit 0 ;;
-    p14) run_test 16 && exit 0 ;;
-    p15) run_test 17 && exit 0 ;;
-    p16) run_test 18 && exit 0 ;;
-    p17) run_test 20 && exit 0 ;;
-    p18) run_test 21 && exit 0 ;;
-    n1) run_test 10 && exit 0 ;;
-    n2) run_test 11 && exit 0 ;;
-esac
-exit 1

python/data/tests-list/lighttpd/lighttpd-bug-2661-2662/tests-list.txt

@@ -1,19 +0,0 @@
-n1
-n2
-p1
-p2
-p3
-p4
-p5
-p6
-p7
-p8
-p9
-p10
-p12
-p13
-p14
-p15
-p16
-p17
-p18

python/data/tests-list/lighttpd/lighttpd-bug-2785-2786/test.sh

@@ -1,45 +0,0 @@
-#!/bin/bash
-bugrev=1913
-dir=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd ) 
-
-
-run_test()
-{
-    cd $dir/src/tests
-    timeout 20 perl /experiment/lighttpd-run-tests.pl $1
-    RESULT=$?
-    if [ $RESULT = 0 ] ; then 
-	echo ""
-	echo "PASS"
-    else
-	echo ""
-	echo "FAIL"
-    fi
-    killall -9 lighttpd &> /dev/null
-    cd ../../
-    return 0
-}
-case $1 in
-    p1) run_test 1 && exit 0 ;;
-    p2) run_test 2 && exit 0 ;;
-    p3) run_test 3 && exit 0 ;;
-    p4) run_test 4 && exit 0 ;;
-    p5) run_test 5 && exit 0 ;;
-    p6) run_test 6 && exit 0 ;;
-    p7) run_test 7 && exit 0 ;;
-    p8) run_test 8 && exit 0 ;;
-    p9) run_test 9 && exit 0 ;;
-    p10) run_test 10 && exit 0 ;;
-    p11) run_test 11 && exit 0 ;;
-    p12) run_test 12 && exit 0 ;;
-    p13) run_test 13 && exit 0 ;;
-    p14) run_test 14 && exit 0 ;;
-    p15) run_test 15 && exit 0 ;;
-    p16) run_test 16 && exit 0 ;;
-    p17) run_test 17 && exit 0 ;;
-    p18) run_test 18 && exit 0 ;;
-    p19) run_test 20 && exit 0 ;;
-    p20) run_test 21 && exit 0 ;;
-    n1) run_test 19 && exit 0 ;;
-esac
-exit 1

python/data/tests-list/lighttpd/lighttpd-bug-2785-2786/tests-list.txt

@@ -1,18 +0,0 @@
-n1
-p2
-p4
-p5
-p6
-p7
-p8
-p9
-p10
-p12
-p13
-p14
-p15
-p16
-p17
-p18
-p19
-p20

python/data/tests-list/php/README.md

@@ -1,23 +0,0 @@
-## Running `php` bugs
-
-After running the container you need to follow the following
-steps to prepare `SOSRepair` for running:
-
-1. Copy `makeout`, `compile.sh` and `tests-list` to
-the container's `/experiment/`.
-2. Copy `settings.py` to the container's `/opt/sosrepair/sosrepair`.
-3. In the container, reconfigure the project with coverage flags:
-```
-cd /experiment/src
-./configure "CFLAGS=-fprofile-arcs -ftest-coverage" "CXXFLAGS=-fprofile-arcs -ftest-coverage" "LDFLAGS=-lgcov"
-make clean
-make
-```
-4. Run `/opt/sosrepair/prepare/setup.sh`.
-5. Set proper permissions by running `sudo chmod -R 777 /opt/sosrepair/sosrepair`.
-6. Setup environment variables:
-```
-export PYTHONPATH="/opt/sosrepair/bindings:${PYTHONPATH}"
-export CPATH=":/opt/sosrepair/include"
-export PATH="/opt/sosrepair/bin:$PATH"
-```

python/data/tests-list/php/compile.sh

@@ -1,8 +0,0 @@
-#!/bin/bash
-DIR=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
-
-cd $DIR/src
-#make clean
-(make && exit 0)|| exit 1
-
-

python/data/tests-list/php/copy.sh

@@ -1,10 +0,0 @@
-#!/bin/bash
-
-
-CONTAINER=$1
-BUG=$2
-
-docker cp compile.sh $CONTAINER:/experiment/
-#docker cp $BUG/test.sh $CONTAINER:/experiment/
-docker cp $BUG/tests-list.txt $CONTAINER:/experiment/
-docker cp $BUG/settings.py $CONTAINER:/opt/sosrepair/sosrepair/

python/data/tests-list/php/php-bug-2011-01-30-5bb0a44e06-1e91069eb4/settings.py

@@ -1,84 +0,0 @@
-"""
-This file includes all the settings that could be modified for running SearchRepair/SOSRepair
-
-* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
-* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
- DB
-* Z3_COMMAND: The z3 command on this machine.
-* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
-* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
-* DATABASE: Information about the database.
-* LOGGING: Settings for logging.
-* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
-* VALID_TYPES: The variable types that are right now supported by SR.
------- Settings related to file under repair -------
-* TESTS_LIST: The path to a list of the tests that could be run on the file
-* TEST_SCRIPT: The path to a script that will run the test
-* COMPILE_SCRIPT: The path to a script that will compile the code
-* FAULTY_CODE: The path to the faulty code (a C file)
-* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
-* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
-automatically)
-* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
-* SOSREPAIR: If set to False it will only run SearchRepair features
-* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
-* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
-"""
-__author__ = 'Afsoon Afzal'
-
-import logging
-
-
-LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
-
-GENERATE_DB_PATH = '/experiment/src'
-
-Z3_COMMAND = '/opt/sosrepair/bin/z3'
-
-LARGEST_SNIPPET = 7
-SMALLEST_SNIPPET = 3
-
-DATABASE = {
-    'db_name': 'testdocker',
-    'user': 'docker',
-    'password': '1234'
-}
-
-LOGGING = {
-    'filename': 'logs/repair.log',
-    'level': logging.DEBUG
-}
-
-logging.basicConfig(**LOGGING)
-
-MAX_SUSPICIOUS_LINES = 10
-
-VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
-
-TESTS_LIST = "/experiment/tests-list.txt"
-TEST_SCRIPT = "/experiment/test.sh"
-TEST_SCRIPT_TYPE = "/bin/bash"
-COMPILE_SCRIPT = "/experiment/compile.sh"
-FAULTY_CODE = "/experiment/src/ext/date/php_date.c"
-
-
-COMPILE_EXTRA_ARGS = [
-                    "-I/experiment/src",
-                    "-I/experiment/src/include",
-                    "-I/experiment/src/main",
-                    "-I/experiment/src/ext",
-                    "-I/usr/include",
-]
-
-MAKE_OUTPUT = "/experiment/makeout"
-
-METHOD_RANGE = (3076, 3095)
-# IF SOS+
-# METHOD_RANGE = (3088, 3088)
-
-SOSREPAIR = True
-
-NUMBER_OF_TIMES_RERUNNING_TESTS = 1
-EXCLUDE_SCANF = False
-
-BULK_RUN_PATH = ""

python/data/tests-list/php/php-bug-2011-01-30-5bb0a44e06-1e91069eb4/tests-list.txt

@@ -1,13 +0,0 @@
-n1
-p2414
-p2378
-p2327
-p2315
-p2298
-p2256
-p2156
-p2102
-p2087
-p2054
-p2042
-p2031

python/data/tests-list/php/php-bug-2011-02-01-01745fa657-1f49902999/settings.py

@@ -1,84 +0,0 @@
-"""
-This file includes all the settings that could be modified for running SearchRepair/SOSRepair
-
-* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
-* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
- DB
-* Z3_COMMAND: The z3 command on this machine.
-* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
-* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
-* DATABASE: Information about the database.
-* LOGGING: Settings for logging.
-* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
-* VALID_TYPES: The variable types that are right now supported by SR.
------- Settings related to file under repair -------
-* TESTS_LIST: The path to a list of the tests that could be run on the file
-* TEST_SCRIPT: The path to a script that will run the test
-* COMPILE_SCRIPT: The path to a script that will compile the code
-* FAULTY_CODE: The path to the faulty code (a C file)
-* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
-* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
-automatically)
-* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
-* SOSREPAIR: If set to False it will only run SearchRepair features
-* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
-* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
-"""
-__author__ = 'Afsoon Afzal'
-
-import logging
-
-
-LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
-
-GENERATE_DB_PATH = '/experiment/src'
-
-Z3_COMMAND = '/opt/sosrepair/bin/z3'
-
-LARGEST_SNIPPET = 7
-SMALLEST_SNIPPET = 3
-
-DATABASE = {
-    'db_name': 'testdocker',
-    'user': 'docker',
-    'password': '1234'
-}
-
-LOGGING = {
-    'filename': 'logs/repair.log',
-    'level': logging.DEBUG
-}
-
-logging.basicConfig(**LOGGING)
-
-MAX_SUSPICIOUS_LINES = 10
-
-VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
-
-TESTS_LIST = "/experiment/tests-list.txt"
-TEST_SCRIPT = "/experiment/test.sh"
-TEST_SCRIPT_TYPE = "/bin/bash"
-COMPILE_SCRIPT = "/experiment/compile.sh"
-FAULTY_CODE = "/experiment/src/main/streams/userspace.c"
-
-
-COMPILE_EXTRA_ARGS = [
-                    "-I/experiment/src",
-                    "-I/experiment/src/include",
-                    "-I/experiment/src/main",
-                    "-I/experiment/src/ext",
-                    "-I/usr/include",
-]
-
-MAKE_OUTPUT = "/experiment/makeout"
-
-METHOD_RANGE = (854, 893)
-# IF SOS+
-# METHOD_RANGE = (858, 859)
-
-SOSREPAIR = True
-
-NUMBER_OF_TIMES_RERUNNING_TESTS = 1
-EXCLUDE_SCANF = False
-
-BULK_RUN_PATH = ""

python/data/tests-list/php/php-bug-2011-02-01-01745fa657-1f49902999/tests-list.txt

@@ -1,6 +0,0 @@
-n1
-p7273
-p1845
-p1609
-p1298
-p59

python/data/tests-list/php/php-bug-2011-02-01-fefe9fc5c7-0927309852/settings.py

@@ -1,84 +0,0 @@
-"""
-This file includes all the settings that could be modified for running SearchRepair/SOSRepair
-
-* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
-* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
- DB
-* Z3_COMMAND: The z3 command on this machine.
-* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
-* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
-* DATABASE: Information about the database.
-* LOGGING: Settings for logging.
-* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
-* VALID_TYPES: The variable types that are right now supported by SR.
------- Settings related to file under repair -------
-* TESTS_LIST: The path to a list of the tests that could be run on the file
-* TEST_SCRIPT: The path to a script that will run the test
-* COMPILE_SCRIPT: The path to a script that will compile the code
-* FAULTY_CODE: The path to the faulty code (a C file)
-* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
-* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
-automatically)
-* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
-* SOSREPAIR: If set to False it will only run SearchRepair features
-* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
-* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
-"""
-__author__ = 'Afsoon Afzal'
-
-import logging
-
-
-LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
-
-GENERATE_DB_PATH = '/experiment/src'
-
-Z3_COMMAND = '/opt/sosrepair/bin/z3'
-
-LARGEST_SNIPPET = 7
-SMALLEST_SNIPPET = 3
-
-DATABASE = {
-    'db_name': 'testdocker',
-    'user': 'docker',
-    'password': '1234'
-}
-
-LOGGING = {
-    'filename': 'logs/repair.log',
-    'level': logging.DEBUG
-}
-
-logging.basicConfig(**LOGGING)
-
-MAX_SUSPICIOUS_LINES = 10
-
-VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
-
-TESTS_LIST = "/experiment/tests-list.txt"
-TEST_SCRIPT = "/experiment/test.sh"
-TEST_SCRIPT_TYPE = "/bin/bash"
-COMPILE_SCRIPT = "/experiment/compile.sh"
-FAULTY_CODE = "/experiment/src/ext/phar/phar.c"
-
-
-COMPILE_EXTRA_ARGS = [
-                    "-I/experiment/src",
-                    "-I/experiment/src/include",
-                    "-I/experiment/src/main",
-                    "-I/experiment/src/ext",
-                    "-I/usr/include",
-]
-
-MAKE_OUTPUT = "/experiment/makeout"
-
-METHOD_RANGE = (1246, 1318)
-# IF SOS+
-# METHOD_RANGE = (1268, 1268)
-
-SOSREPAIR = True
-
-NUMBER_OF_TIMES_RERUNNING_TESTS = 1
-EXCLUDE_SCANF = False
-
-BULK_RUN_PATH = ""