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merge python scripts

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fixminer
2020-04-06 21:30:39 +02:00
parent 61a9612345
commit c5463f91f8
75 changed files with 95073 additions and 12 deletions
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python/test_patched_file.py
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import bugzoo
from bugzoo import server, Container
from common.commons import *
import signal
# from common.commons import shellGitCheckout
DATA_PATH = os.environ["DATA_PATH"]
introClassFile = join(DATA_PATH,'introClassData.txt')
def testCore(t):
bugName, port = t
container = None
# with bugzoo.server.ephemeral(port=port, verbose=False,bugzooPath="/Users/anil.koyuncu/anaconda3/envs/python36/bin/bugzood", timeout_connection=3000) as client:
cmd = 'bash {} {}'.format(join(DATA_PATH,'startBugzoo.sh'),port)
with Popen(cmd, stdout=PIPE, stderr=PIPE, shell=True) as process:
# o,e = shellGitCheckout(cmd)
url = "http://127.0.0.1:{}".format(port)
timeout_connection = 3000
client = Client(url, timeout_connection=timeout_connection)
# with bugzoo.server.ephemeral(port=port, verbose=False, timeout_connection=3000) as client:
try:
# port = 6060
# url = "http://127.0.0.1:{}".format(port)
# client = Client(url, timeout_connection=300)
# bugName = bugList[i]
# if bugName != 'introclass:digits:070455:000':
# continue
fix = 'failure'
output = ''
# print("bugName: {}".format(bugName), end=' ')
output += 'bugName:' + bugName + ', '
bug = client.bugs[bugName]
if not client.bugs.is_installed(bug):
output += ' building'
client.bugs.build(bug)
# client.bugs.download(bug)
# print("the image is not installed :'(")
# print("creating container...")
container = client.containers.provision(bug)
# print("container is ready")
# print("First_test:", end=' ')
output += 'First_test:'
pre_test_outcomes = {}
pre_failure_cases, pre_failure, total, pre_test_outcomes = test_all(bug, container, client)
# print("@fail:{}@total:{}".format(pre_failure, total), end=' ')
# print("@pre_failure_cases:{}".format(pre_failure_cases), end=' ')
if pre_failure == 0:
logging.error(bugName + ' no failed test initially')
return ''
output += '@fail:' + str(pre_failure) + '@total:' + str(total) + ', '
# print("patching...")
path = join(DATA_PATH,'introclass',bugName)
patch_path = join(path ,'patched')
# avaliable_patch = os.path.abspath('data') + '/introclass2/' + bugName + '/' + 'patches'
patch_names = os.listdir(patch_path)
times = 0
for patch_name in patch_names:
# if patch_name not in os.listdir(avaliable_patch):
# continue
patch = join(patch_path,patch_name)
patch_result = patched_application(path, bug.name, patch, client, container)
if patch_result == -1 or patch_result.code != 0:
# print("@{}@".format('False'), end='')
# print("{}".format('F'), end=' ')
output += '@False@F '
continue
# print("@{}@".format('True'), end='')
output += '@True@'
# print("Second_test:", end=' ')
post_test_outcomes = {}
post_failure_cases, post_failure, total, post_test_outcomes = test_all(bug, container, client)
# print("{}".format(post_failure), end=' ')
output += str(post_failure) + ' '
if post_failure == 0:
times += 1
fix = 'success'
# print("fix {} by {}".format(bugName, patch_name))
output += 'fix {} by {} '.format(bugName, patch_name)
# print("@fail:{}@total:{}".format(post_failure, total),end=' ')
# print("@post_failure_cases:{}".format(post_failure_cases))
# cmd = 'docker rm -fv {}'.format(container.id)
# out, e = shellGitCheckout(cmd)
output += 'times:{}, '.format(times) + fix
print(output)
return output
except Exception as e:
logging.error(e)
finally:
# ''
cmd = 'docker stop {}'.format(container.id)
out, e = shellGitCheckout(cmd)
client.shutdown()
os.killpg(process.pid, signal.SIGTERM)
# docker stop $(docker ps -q)
def patch_validate():
logger = logging.getLogger()
for k,v in logger.manager.loggerDict.items():
if(k.startswith('bugzoo')):
if isinstance(v,logging.Logger):
v.setLevel(logging.ERROR)
# url = "http://127.0.0.1:6060"
# client = bugzoo.Client(url)
# bug = client.bugs['introclass:checksum:08c7ea:006']
bugList = []
# cmd = 'bash ' + join(DATA_PATH,'startBugzoo.sh')
# cmd = "/Users/anil.koyuncu/anaconda3/envs/python36/bin/bugzood --debug -p " + str(port)
# output, errors = shellGitCheckout(cmd)
# with bugzoo.server.ephemeral(port=8082, verbose=True, timeout_connection=3000) as client:
port = 6000
bugs2test= listdir(join(DATA_PATH, "introclass"))
for b in bugs2test:
t = b, port
bugList.append(t)
if port == 6300:
port = 6000
port += 1
# with open(introClassFile, 'r') as file:
# for line in file.readlines():
#
# t =line.strip(),port
# bugList.append(t)
# if port == 6300:
# port = 6000
# port +=1
# for i in range(0,len(bugList)):
# t = 'introclass:syllables:93f87b:005',6000
# t = 'introclass:syllables:99cbb4:000',6000
# testCore(t)
results = parallelRunMerge(testCore, bugList,max_workers=10)
# print('\n'.join(results))
with open(join(DATA_PATH, 'introTestResults'), 'w',
encoding='utf-8') as writeFile:
# if levelPatch == 0:
writeFile.write('\n'.join(results))
# for i in bugList:
# testCore(i)
# pass
from bugzoo import Patch, Client
def test_all(bug, container, client):
test_outcomes = {} # type: Dict[TestCase, TestOutcome]
failure_cases = []
failure = 0
total = len(bug.tests._tests)
for test in bug.tests:
test_outcomes[test] = client.containers.test(container, test)
# if test.expected_outcome != test_outcomes[test].passed:
if test_outcomes[test].passed != True:
failure += 1
failure_cases.append(test.command)
break
return failure_cases, failure, total, test_outcomes
def patched_application(path, bugName, patched, client: Client, container: Container):
buggroup = bugName.split(":")[1]
# path = join(BUGDIR,bug)
program = path + '/' + buggroup + '.c'
fixedFile = patched.split('/')[-1]
cmd = 'docker cp ' + patched + ' ' + container.id + ':/experiment/'
output, e = shellGitCheckout(cmd)
cmd = 'sudo chown $(whoami):$(whoami) "{}"'
cmd = cmd.format(fixedFile)
output = client.containers.exec(container=container, command=cmd, context='/experiment/')
# cmd = 'rm .genprog_test_cache.json & mv {} {}.c & gcc -o {} {}'.format(fixedFile,fixedFile, buggroup, fixedFile+'.c')
cmd = 'rm {} & rm .genprog_test_cache.json'.format(buggroup)
output = client.containers.exec(container=container, command=cmd, context='/experiment/')
cmd = 'setarch `uname -m` -R gcc -o {} {}'.format(buggroup, fixedFile)
output = client.containers.exec(container=container, command=cmd, context='/experiment/')
return output
def checkCorrect():
regex = r"fix (.*) by (.*)\.c"
if not os.path.exists(join(DATA_PATH, 'introclass_eval')):
os.makedirs(join(DATA_PATH, 'introclass_eval'))
with open(join(DATA_PATH, 'introTestResults'), 'r',
encoding='utf-8') as readFile:
res = readFile.readlines()
results = []
for line in res:
if line.strip().endswith('success'):
line = '\n'.join(line.split('@'))
matches = re.finditer(regex, line, re.MULTILINE)
for matchNum, match in enumerate(matches, start=1):
bug, patch = match.groups()
print(bug,patch)
t = bug,patch
results.append(t)
# for groupNum in range(0, len(match.groups())):
# groupNum = groupNum + 1
#
# print("Group {groupNum} found at {start}-{end}: {group}".format(groupNum=groupNum,
# start=match.start(groupNum),
# end=match.end(groupNum),
# group=match.group(groupNum)))
# line
for t in results:
bug, patch = t
if not os.path.exists(join(DATA_PATH, 'introclass_eval',bug)):
os.makedirs(join(DATA_PATH, 'introclass_eval',bug))
buggyFile = join(DATA_PATH,'introclass',bug,patch.split('.')[0]+'.c')
spinferFix = join(DATA_PATH,'introclass_patched',bug,'patches',patch + '.c')
spinferPatch = join(DATA_PATH,'introclass_eval',bug,patch +'.patch')
oracle = join(DATA_PATH,'introclass',bug,'oracle.c.patch')
oracleEval = join(DATA_PATH,'introclass_eval',bug,'oracle.patch')
cmd = 'diff -u ' +buggyFile + ' ' + spinferFix + ' > ' + spinferPatch
o,e= shellGitCheckout(cmd)
shutil.copy(oracle,oracleEval)
if __name__ == "__main__":
patch_validate()