diff --git a/.idea/workspace.xml b/.idea/workspace.xml index a4fab60..5be37e3 100644 --- a/.idea/workspace.xml +++ b/.idea/workspace.xml @@ -2,7 +2,7 @@ - + @@ -48,7 +48,7 @@ - + @@ -57,6 +57,11 @@ + + + + + @@ -175,17 +180,16 @@ - - + - + @@ -242,6 +246,9 @@ + + + diff --git a/README.md b/README.md index fc85219..9bdf3a4 100644 --- a/README.md +++ b/README.md @@ -1,7 +1,238 @@ -# FixMiner ![Build Status](https://travis-ci.com/SerVal-DTF/fixminer_source.svg?branch=master)[![Coverage Status](https://coveralls.io/repos/github/SerVal-DTF/fixminer_source/badge.svg?branch=master)](https://coveralls.io/github/SerVal-DTF/fixminer_source?branch=master) - -# Code of FixMiner - -Reference: [FixMiner: Mining Relevant Fix Patterns for Automated Program Repair](http://arxiv.org/pdf/1810.01791) (Empirical Software Engineering, [doi:10.1007/s10664-019-09780-z](https://doi.org/10.1007/s10664-019-09780-z)) - - +# FixMiner ![Build Status](https://travis-ci.com/SerVal-DTF/fixminer_source.svg?branch=master)[![Coverage Status](https://coveralls.io/repos/github/SerVal-DTF/fixminer_source/badge.svg?branch=master)](https://coveralls.io/github/SerVal-DTF/fixminer_source?branch=master) + +# Code of FixMiner + +Reference: [FixMiner: Mining Relevant Fix Patterns for Automated Program Repair](http://arxiv.org/pdf/1810.01791) (Empirical Software Engineering, [doi:10.1007/s10664-019-09780-z](https://doi.org/10.1007/s10664-019-09780-z)) + +# FixMiner + +* [I. Introduction of FixMiner](#user-content-i-introduction) +* [II. Environment setup](#user-content-ii-environment) +* [III. Replication Data](#user-content-iii-data) +* [IV. Step-by-Step execution](#user-content-iv-how-to-run) + + +## I. Introduction + +Fixminer is a systematic and automated approach to mine relevant and actionable fix patterns for automated program repair. +![The workflow of this technique.\label{workflow}](worflow.png) + +## II. Environment setup + +* OS: macOS Mojave (10.14.3) +* JDK8: Oracle jdk1.8 (**important!**) +* Download and configure Anaconda +* Create an python environment using the [environment file](environment.yml) + ```powershell + conda env create -f environment.yml + ``` +* After creating the environment, activate it. It is containing necessary dependencies for redis, and python. + ```powershell + source activate redisEnv + ``` + + +## III. Replication Data +Replication Data: + + [singleBR.pickle](python/data/singleBR.pickle) + + This pickle contains the list bug reports (i.e. bid) with the their corresponding fixes (i.e. commit) for each project in the dataset (i.e. project). + + [bugReports.7z.00X](python/data/bugReports.7z.001) + + This is the dump of the bug reports archive extracted from each commit. These bug reports are not necessarily considered as BUG,CLOSED; this archive is the contins initial bug reports before identifying the fixes. + + [gumInput.7z.001](python/data/gumInput.7z.001) + + This archive contains all the patches in our dataset, formatted in a way that can be processed by GumTree (i.e DiffEntries, prevFiles, revFiles) + + [ALLbugReportsComplete.pickle](python/data/ALLbugReportsComplete.pickle) + + The pickle object that represents the bug reports under the following columns 'bugReport', 'summary', 'description', 'created', 'updated', 'resolved', 'reporterDN', 'reporterEmail','hasAttachment', 'attachmentTime', 'hasPR', 'commentsCount' + +#### Data Viewer + +The data provided with replication package is listed in directory [python/data](python/data) +The data is stored in different formats. (e.g. pickle, db, csv, etc..) + +The see content of the .pickle file the following script could be used. + + ```python + import pickle as p + import gzip + def load_zipped_pickle(filename): + with gzip.open(filename, 'rb') as f: + loaded_object = p.load(f) + return loaded_object + ``` +Usage + + ```python + result = load_zipped_pickle('code/LANGbugReportsComplete.pickle') + # Result is pandas object which can be exported to several formats + # Details on how to export is listed in offical library documentation + # https://pandas.pydata.org/pandas-docs/stable/reference/api/pandas.DataFrame.html + + ``` + + +## IV. Step-by-Step execution + +#### Before running + +* Update [config file](python/config.yml) with corresponding user paths. + +* Active the conda environment from shell + ```powershell + source activate redisEnv + ``` + +In order to launch FixMiner, execute [fixminer.sh](python/fixminer.sh) + + bash fixminer.sh [PATH_TO_PYTHON_FOLDER] [OPTIONS] + e.g. bash fixminer.sh Users/fixminer-core/python/ stats + +#### Running Options + +*FixMiner* needs to specify an option to run. + + 1. 'dataset': Create a mining dataset from the project speficied in [subjects.csv](python/data/subjects.csv) + Eventually dataset option is the execution of the following steps, which are merged under 'dataset' option + for this demo. Eventually single options can be activated by commenting out the corresponding option in [main.py](python/main.py) + + `clone` : Clone target project repository. + + `collect` : Collect all commit from repository. + + `fix` : Collect commits linked to a bug report. + + `bugPoints` : Identify the snapshot of the repository before the bug fixing commit introducted. + + `brDownload` : Download bug reports recovered from commit log + + `brParser` : Parse bug reports to select the bug report where type labelled as BUG and status as RESOLVED or CLOSED + + 2. 'richEditScript': Rich edit script computation step. + + 3. 'shapeSI': Search index creation for shapes. The output of this step is written to [pairs](python/data/pairs) + + 4. 'compareShapes' : ShapeTree comparison + + 5. 'cluster': Forms clusters of identical shapetree. The output of this step is written to [shapes](python/data/shapes) + + 6. 'actionSI': Search index creation for actions. The output of this step is written to [pairs](python/data/pairsAction) + + 7. 'compareActions' : ActionTree comparison + + 8. 'clusterActions': Forms clusters of identical ActionTree. The output of this step is written to [shapes](python/data/actions) + + 9. 'tokenSI': Search index creation for shapes. The output of this step is written to [pairs](python/data/pairsToken) + + 10. 'compareTokens' : TokenTree comparison + + 11. 'clusterTokens': Forms clusters of identical TokenTree. The output of this step is written to [shapes](python/data/tokens) + + 12. 'stats' : Calculate some statistics about patterns under python/data/statsactions.csv,statsshapes.csv,statstokens.csv, and export FixPatterns of APR integration [fixpatterns](actionPattern2verify.csv) + + + + + + + + diff --git a/environment.yml b/environment.yml new file mode 100644 index 0000000..f135361 --- /dev/null +++ b/environment.yml @@ -0,0 +1,13 @@ +name: fixminerEnv +channels: + - anaconda + - defaults +dependencies: + - numpy + - tqdm + - pandas + - pyyaml + - redis-py + - scikit-learn + - networkx=2.1 + diff --git a/python/MF0012.local.config.yml b/python/MF0012.local.config.yml new file mode 100644 index 0000000..8ccf60c --- /dev/null +++ b/python/MF0012.local.config.yml @@ -0,0 +1,16 @@ +java: + 8home: /Library/Java/JavaVirtualMachines/jdk1.8.0_181.jdk/Contents/Home +spinfer: + home: /Users/anil.koyuncu/projects/spinfer/spinfer.native +dataset: + home: /Users/anil.koyuncu/projects/test/fixminer-data/patches/ + repo: /Users/anil.koyuncu/projects/test/fixminer-data/datasets +# home: /data/fixminer-core/python/data/gumInputLinux/ + +coccinelle: + home: /Users/anil.koyuncu/projects/spinfer/statics + +fixminer: + datapath: /Users/anil.koyuncu/projects/test/fixminer-data/ + projectType : c +# datapath: /data/fixminer-core/python/data/ diff --git a/python/abstractPatch.py b/python/abstractPatch.py new file mode 100644 index 0000000..956461b --- /dev/null +++ b/python/abstractPatch.py @@ -0,0 +1,306 @@ + +import redis + +from common.commons import * + +DATA_PATH = os.environ["DATA_PATH"] +DATASET = os.environ["dataset"] +jdk8 = os.environ["JDK8"] +# def localPairCore(aTuple): +# redis_db = redis.StrictRedis(host="localhost", port=6380, db=1) +# idx, key = aTuple +# +# +# +# val = redis_db.get(key) +# +# res = val.decode().split(',') +# res.insert(0, key.decode().split('_')[1:]) +# res.insert(0, key.decode()) +# # matches.loc[idx] = res +# return res +ast = ["AnonymousClassDeclaration", "ArrayAccess", "ArrayCreation", "ArrayInitializer", "ArrayType", "AssertStatement", + "Assignment", "Block", "BooleanLiteral", "BreakStatement", "CastExpression", "CatchClause", "CharacterLiteral", + "ClassInstanceCreation", "CompilationUnit", "ConditionalExpression", "ConstructorInvocation", + "ContinueStatement", "DoStatement", "EmptyStatement", "ExpressionStatement", "FieldAccess", "FieldDeclaration", + "ForStatement", "IfStatement", "ImportDeclaration", "InfixExpression", "Initializer", "Javadoc", + "LabeledStatement", "MethodDeclaration", "MethodInvocation", "NullLiteral", "NumberLiteral", + "PackageDeclaration", "ParenthesizedExpression", "PostfixExpression", "PrefixExpression", "PrimitiveType", + "QualifiedName", "ReturnStatement", "SimpleName", "SimpleType", "SingleVariableDeclaration", "StringLiteral", + "SuperConstructorInvocation", "SuperFieldAccess", "SuperMethodInvocation", "SwitchCase", "SwitchStatement", + "SynchronizedStatement", "ThisExpression", "ThrowStatement", "TryStatement", "TypeDeclaration", + "TypeDeclarationStatement", "TypeLiteral", "VariableDeclarationExpression", "VariableDeclarationFragment", + "VariableDeclarationStatement", "WhileStatement", "InstanceofExpression", "LineComment", "BlockComment", + "TagElement", "TextElement", "MemberRef", "MethodRef", "MethodRefParameter", "EnhancedForStatement", + "EnumDeclaration", "EnumConstantDeclaration", "TypeParameter", "ParameterizedType", "QualifiedType", + "WildcardType", "NormalAnnotation", "MarkerAnnotation", "SingleMemberAnnotation", "MemberValuePair", + "AnnotationTypeDeclaration", "AnnotationTypeMemberDeclaration", "Modifier", "UnionType", "Dimension", + "LambdaExpression", "IntersectionType", "NameQualifiedType", "CreationReference", "ExpressionMethodReference", + "SuperMethodReference", "TypeMethodReference", "MethodName", "Operator", "New", "Instanceof"] + +ast = ["unit","comment","name","type","condition","block","index","decltype","typename","atomic","assert","generic_selection","selector","association_list", + "association","expr_stmt","expr","decl_stmt","decl","range","break","continue","goto","label","typedef","asm","enum","ternary","elseif","while","lock", + "fixed","checked","unchecked","unsafe","do","switch","case","default","for","foreach","group","init","incr","function","function_decl","lambda","specifier", + "return","call","sizeof","parameter_list","param","krparameter_list","krparam","argument_list","argument","capture","struct","struct_decl","union","union_decl", + "class","class_decl","public","private","protected","namespace","using","try","catch","finally","throw","throws","noexcept","template","directive","file","number", + "include","define","undef","line","if","ifdef","ifndef","else","elif","endif","then","pragma","error","macro","value","import","constructor_decl","empty_stmt","escape","annotation","alignof","forever","extern"] + +movPattern = 'MOV (' + '|'.join(ast) + ')@@(.*)@TO@ (' + '|'.join(ast) + ')@@(.*)@AT@' +delPattern = 'DEL (' + '|'.join(ast) + ')@@(.*)@AT@' +insPattern = 'INS (' + '|'.join(ast) + ')@@(.*)@TO@ (' + '|'.join(ast) + ')@@(.*)@AT@' +updPattern = 'UPD (' + '|'.join(ast) + ')@@(.*)@TO@(.*)@AT@' + +def loadPairMulti(root,clusterPath,level): + + # root = 'BreakStatement' + logging.info(root) + port = 6399 + # if isfile(clusterPath +"/"+root+".pickle"): + # return load_zipped_pickle(clusterPath +"/"+root+".pickle") + # else: + # redis_db = redis.StrictRedis(host="localhost", port=port, db=1) #L1 + redis_db = redis.StrictRedis(host="localhost", port=port, db=2) + keys = redis_db.scan(0, match=root+'-*', count='100000000') + # keys = redis_db.hkeys("dump") + + # tuples = [] + # for idx,key in enumerate(keys[1]): + # t = idx,key + # tuples.append(t) + + # coreNumber = 1600 + # print('Core number %s' % coreNumber) + matches = pd.DataFrame(keys[1],columns=['pairs_key']) + matches['pairs_key']=matches['pairs_key'].apply(lambda x:x.decode()) + # matches['pairs']=matches['pairs_key'].apply(lambda x:x.split('_')[1:]) + matches['pairs']=matches['pairs_key'].apply(lambda x:x.split(root)[1].split('/')[1:]) + matches['tuples'] = matches.pairs.apply(lambda x: tuple(x)) + # matches['path1']=matches['pairs_key'].apply(lambda x:x.split('_')[1]) + matches['path1']=matches['pairs'].apply(lambda x:x[0]) + # matches['path2']=matches['pairs_key'].apply(lambda x:x.split('_')[2]) + matches['path2']=matches['pairs'].apply(lambda x:x[1]) + # matches['sizes']=matches['pairs_key'].apply(lambda x:x.split('_')[0].split('-')[1]) + matches['sizes']=matches['pairs_key'].apply(lambda x:x.split(root)[1].split('/')[0].split('-')[1]) + if level == 'actions': + matches['actions']=matches['pairs_key'].apply(lambda x:x.split('/')[0].split('-')[2]) + if level == 'tokens': + matches['actions'] = matches['pairs_key'].apply(lambda x: x.split('/')[0].split('-')[2]) + matches['tokens']=matches['pairs_key'].apply(lambda x:x.split('/')[0].split('-')[3]) + + + # save_zipped_pickle(matches,clusterPath +"/"+root+".pickle") + return matches + + + +def getMapping(pathMapping,x): + pair1,pair2 = x['pairs'] + p1 = x['path1'] + p2 = x['path2'] + pathMapping[pair1] = p1 + pathMapping[pair2] = p2 + + + + + +def cluster(clusterPath,pairsPath, level,rootType): + + try: + # logging.info('Parameters: \ninputPath %s \nclusterPath %s \nport %s \nmatchesName %s \nthreshold %s \n%indexFile',inputPath,clusterPath,str(port),matchesName,str(threshold),indexFile) + os.makedirs(clusterPath, exist_ok=True) + roots = listdir(pairsPath) + roots = [i for i in roots if not i.startswith('.')] + # roots = [rootType] + # parallelRun(loadPairMulti,roots,clusterPath) + for root in roots: + matches = loadPairMulti(root,clusterPath,level) + sizes = matches['sizes'].unique().tolist() + for s in sizes: + match = matches[matches['sizes'] == s] + + if level == 'actions': + actions = match['actions'].unique().tolist() + for action in actions: + match = match[match['actions'] == action] + clusterCore(clusterPath, level, match, pairsPath, root, s,action) + elif level == 'tokens': + actions = match['actions'].unique().tolist() + for action in actions: + match = match[match['actions'] == action] + tokens = match['tokens'].unique().tolist() + for token in tokens: + match = match[match['tokens']==token] + clusterCore(clusterPath, level, match, pairsPath, root, s, action,token) + else: + clusterCore(clusterPath, level, match, pairsPath, root, s,'') + + # redis_db = redis.StrictRedis(host="localhost", port=6399, db=2) + # redis_db.flushdb() + # redis_db = redis.StrictRedis(host="localhost", port=6399, db=1) + # redis_db.flushdb() + # redis_db = redis.StrictRedis(host="localhost", port=6399, db=0) + # redis_db.delete("compare") + + + + except Exception as ex: + logging.error(ex) + + +def clusterCore(clusterPath, level, match, pairsPath, root, s,action ,token=''): + col_combi = match.tuples.values.tolist() + import networkx + g = networkx.Graph(col_combi) + cluster = [] + for subgraph in networkx.connected_component_subgraphs(g): + logging.info('Cluster size %d',len(subgraph.nodes())) + cluster.append(subgraph.nodes()) + cluster + pathMapping = dict() + if level == 'actions': + indexFile = join(pairsPath, root, s,action+'.index') + elif level == 'shapes': + indexFile = join(pairsPath, root, s + '.index') + else: + indexFile =join(pairsPath, root, s,action,token+'.index') + df = pd.read_csv(indexFile, header=None, usecols=[0, 1], index_col=[0]) + pathMapping = df.to_dict() + + workList = [] + for idx, clus in enumerate(cluster): + logging.info('exporting cluster %s %s %s %d', root,s,action,idx) + for f in clus: + dumpFile = pathMapping[1][int(f)] + + t = dumpFile,root,level,clusterPath,s,action,token,idx + workList.append(t) + + parallelRun(dumpFilesCore,workList) + # for wl in workList: + # dumpFilesCore(wl) + # dumpFilesCore(('hive_d65d5c_96c1dc_ql#src#gen#protobuf#gen-java#org#apache#hadoop#hive#ql#io#orc#OrcProto.txt_31', 'ReturnStatement', 'tokens', '/Users/anil.koyuncu/projects/fixminer-all/enhancedASTDiff/python/data/tokens', '3', '1', '0', 10)) + + +def dumpFilesCore(t): + + try: + dumpFile, root, level, clusterPath, s, action, token, idx = t + split = dumpFile.split('_') + project = split[0] + filename = "_".join(split[1:-1]) + filePath = join(DATASET, project, 'DiffEntries', filename) + + key = root + '/'+s+'/'+dumpFile + jdk8 = os.environ["JDK8"] + # cmd = "JAVA_HOME='"+jdk8+"' java -jar "+ join(DATA_PATH,'FixPatternMiner-1.0.1.jar') + " " + join(DATA_PATH,'app.properties')+" PATTERN " +key + + clusterSavePath = join(clusterPath, root, s, str(idx)) + os.makedirs(clusterSavePath, exist_ok=True) + shutil.copy(filePath,join(clusterSavePath,dumpFile)) + # with open(join(clusterSavePath, dumpFile), 'w', encoding='utf-8') as writeFile: + # writeFile.write(lines) + + + + clusterSavePath = '' + # if level == 'shapes': + # clusterSavePath = join(clusterPath, root,s, str(idx)) + # + # o, e = shellGitCheckout(cmd) + # lines = o + # elif level == 'actions': + # clusterSavePath = join(clusterPath, root, s,action, str(idx)) + # + # o, e = shellGitCheckout(cmd) + # lines = o + # else: + # clusterSavePath = join(clusterPath, root, s,action,token, str(idx)) + # o, e = shellGitCheckout(cmd) + # lines = o + # # with open(filePath, 'r', encoding='utf-8') as fi: + # # lines = fi.read() + # + # if level =='shapes' or level=='actions': + # + # lines = re.split("@LENGTH@ \d+", lines) + # tokens = [] + # for line in lines: + # # levelPatch = len(re.findall('\w*---', line)) + # match = re.search(r"^\w*---+", line,re.M) + # + # + # if match is not None: + # not_matched, matched = line[:match.start()], match.group() + # levelPatch = int(len(matched) / 3) + # else: + # levelPatch = 0 + # line = line.strip().strip('-') + # type = '' + # if line is '': + # continue + # t = [] + # searchPattern = '' + # if line.startswith('INS'): + # if level =='actions': + # t= [1,3] + # else: + # t = [1] + # searchPattern = insPattern + # type =' INS ' + # elif line.startswith('UPD'): + # t = [1] + # searchPattern = updPattern + # type = ' UPD ' + # elif line.startswith('DEL'): + # t = [1] + # searchPattern = delPattern + # type = ' DEL ' + # elif line.startswith('MOV'): + # if level == 'actions': + # t = [1, 3] + # else: + # t = [1] + # searchPattern = movPattern + # type = ' MOV ' + # # from common.preprocessing import preprocessingForSimi + # m = re.search(searchPattern, line, re.DOTALL) + # if t is None: + # print() + # if m: + # for k in t: + # prefix = '---' * levelPatch + # if prefix != '': + # prefix = '\n'+prefix + # token = m.group(k) + # if level =='actions': + # if k ==3: + # prefix = 'TO ' + # else: + # prefix = prefix + type + # + # tokens.append(prefix+token) + # + # os.makedirs(clusterSavePath, exist_ok=True) + # with open(join(clusterSavePath, dumpFile), 'w', encoding='utf-8') as writeFile: + # # if levelPatch == 0: + # writeFile.write(' '.join(tokens)) + # # else: + # # writeFile.write('\n'.join(tokens)) + # else: + # os.makedirs(clusterSavePath, exist_ok=True) + # with open(join(clusterSavePath, dumpFile), 'w', encoding='utf-8') as writeFile: + # writeFile.write(lines) + + except Exception as ex: + logging.error(t) + logging.error(ex) + raise ex + + + + + + + + diff --git a/python/actionsPattern2verify.csv b/python/actionsPattern2verify.csv new file mode 100644 index 0000000..419fc51 --- /dev/null +++ b/python/actionsPattern2verify.csv @@ -0,0 +1,222 @@ +ExpressionStatement-3-0-0," UPD ExpressionStatement +--- UPD MethodInvocation +------ UPD SimpleName" +ExpressionStatement-4-3-0," UPD ExpressionStatement +--- UPD MethodInvocation +------ UPD SimpleName +--------- UPD StringLiteral" +VariableDeclarationStatement-3-0-0," UPD VariableDeclarationStatement +--- UPD VariableDeclarationFragment +------ UPD SimpleName" +FieldDeclaration-2-0-0," UPD FieldDeclaration +--- INS Modifier TO FieldDeclaration" +FieldDeclaration-6-0-0," INS FieldDeclaration TO TypeDeclaration +--- INS Modifier TO FieldDeclaration +--- INS Modifier TO FieldDeclaration +--- INS SimpleType TO FieldDeclaration +--- INS VariableDeclarationFragment TO FieldDeclaration +------ INS SimpleName TO VariableDeclarationFragment" +FieldDeclaration-8-0-0," INS FieldDeclaration TO TypeDeclaration +--- INS Modifier TO FieldDeclaration +--- INS Modifier TO FieldDeclaration +--- INS Modifier TO FieldDeclaration +--- INS SimpleType TO FieldDeclaration +--- INS VariableDeclarationFragment TO FieldDeclaration +------ INS SimpleName TO VariableDeclarationFragment +------ INS StringLiteral TO VariableDeclarationFragment" +ExpressionStatement-2-0-0," DEL ExpressionStatement +--- DEL MethodInvocation" +ExpressionStatement-2-0-1," INS ExpressionStatement TO MethodDeclaration +--- INS MethodInvocation TO ExpressionStatement" +VariableDeclarationStatement-5-2-0," INS VariableDeclarationStatement TO MethodDeclaration +--- INS SimpleType TO VariableDeclarationStatement +--- INS VariableDeclarationFragment TO VariableDeclarationStatement +------ INS SimpleName TO VariableDeclarationFragment +------ INS NullLiteral TO VariableDeclarationFragment" +VariableDeclarationStatement-2-0-0," UPD VariableDeclarationStatement +--- INS Modifier TO VariableDeclarationStatement" +MethodDeclaration-2-0-0," UPD MethodDeclaration +--- INS Modifier TO MethodDeclaration" +VariableDeclarationStatement-7-0-0," INS VariableDeclarationStatement TO MethodDeclaration +--- INS SimpleType TO VariableDeclarationStatement +--- INS VariableDeclarationFragment TO VariableDeclarationStatement +------ INS SimpleName TO VariableDeclarationFragment +------ INS MethodInvocation TO VariableDeclarationFragment +--------- INS SimpleName TO MethodInvocation +--------- INS SimpleName TO MethodInvocation" +FieldDeclaration-3-0-0," UPD FieldDeclaration +--- UPD VariableDeclarationFragment +------ UPD SimpleName" +ExpressionStatement-5-6-0," INS ExpressionStatement TO IfStatement +--- INS Assignment TO ExpressionStatement +------ INS SimpleName TO Assignment +------ INS Operator TO Assignment +------ INS BooleanLiteral TO Assignment" +VariableDeclarationStatement-4-0-0," DEL VariableDeclarationStatement +--- DEL SimpleType +--- DEL VariableDeclarationFragment +------ DEL SimpleName" +IfStatement-6-0-0," DEL IfStatement +--- DEL InfixExpression +------ DEL SimpleName +------ DEL Operator +------ DEL NullLiteral +--- DEL ExpressionStatement" +ExpressionStatement-2-0-2," INS ExpressionStatement TO Block +--- MOV MethodInvocation TO ExpressionStatement" +ExpressionStatement-7-1-0," UPD ExpressionStatement +--- UPD MethodInvocation +------ UPD SimpleName +--------- INS StringLiteral TO SimpleName +--------- DEL MethodInvocation +------------ DEL TypeLiteral +------------ DEL SimpleName" +SwitchCase-2-0-0," INS SwitchCase TO SwitchStatement +--- INS SimpleName TO SwitchCase" +MethodDeclaration-2-0-1," UPD MethodDeclaration +--- DEL Modifier" +ReturnStatement-2-0-0," DEL ReturnStatement +--- DEL SimpleName" +TypeDeclaration-5-0-0," INS TypeDeclaration TO TypeDeclaration +--- INS Modifier TO TypeDeclaration +--- INS Modifier TO TypeDeclaration +--- INS SimpleName TO TypeDeclaration +--- INS SimpleType TO TypeDeclaration" +ReturnStatement-2-0-1," INS ReturnStatement TO MethodDeclaration +--- INS SimpleName TO ReturnStatement" +FieldDeclaration-2-0-1," UPD FieldDeclaration +--- DEL Modifier" +FieldDeclaration-5-2-0," INS FieldDeclaration TO TypeDeclaration +--- INS Modifier TO FieldDeclaration +--- INS PrimitiveType TO FieldDeclaration +--- INS VariableDeclarationFragment TO FieldDeclaration +------ INS SimpleName TO VariableDeclarationFragment" +ReturnStatement-2-0-3," UPD ReturnStatement +--- UPD SimpleName" +CatchClause-3-0-0," UPD CatchClause +--- UPD SingleVariableDeclaration +------ UPD SimpleType" +MethodDeclaration-14-0-0," INS MethodDeclaration TO TypeDeclaration +--- INS Modifier TO MethodDeclaration +--- INS PrimitiveType TO MethodDeclaration +--- INS SimpleName TO MethodDeclaration +--- INS SingleVariableDeclaration TO MethodDeclaration +------ INS SimpleType TO SingleVariableDeclaration +------ INS SimpleName TO SingleVariableDeclaration +--- INS ExpressionStatement TO MethodDeclaration +------ INS Assignment TO ExpressionStatement +--------- INS FieldAccess TO Assignment +------------ INS ThisExpression TO FieldAccess +------------ INS SimpleName TO FieldAccess +--------- INS Operator TO Assignment +--------- INS SimpleName TO Assignment" +ExpressionStatement-2-0-3," INS ExpressionStatement TO MethodDeclaration +--- MOV MethodInvocation TO ExpressionStatement" +FieldDeclaration-11-0-0," INS FieldDeclaration TO TypeDeclaration +--- INS Modifier TO FieldDeclaration +--- INS Modifier TO FieldDeclaration +--- INS Modifier TO FieldDeclaration +--- INS SimpleType TO FieldDeclaration +--- INS VariableDeclarationFragment TO FieldDeclaration +------ INS SimpleName TO VariableDeclarationFragment +------ INS MethodInvocation TO VariableDeclarationFragment +--------- INS SimpleName TO MethodInvocation +--------- INS SimpleName TO MethodInvocation +------------ INS TypeLiteral TO SimpleName" +ReturnStatement-3-3-0," UPD ReturnStatement +--- UPD MethodInvocation +------ UPD QualifiedName" +IfStatement-5-3-0," INS IfStatement TO IfStatement +--- MOV ExpressionStatement TO IfStatement +--- INS MethodInvocation TO IfStatement +------ INS SimpleName TO MethodInvocation +------ INS SimpleName TO MethodInvocation" +VariableDeclarationStatement-7-0-2," INS VariableDeclarationStatement TO IfStatement +--- INS SimpleType TO VariableDeclarationStatement +--- INS VariableDeclarationFragment TO VariableDeclarationStatement +------ INS SimpleName TO VariableDeclarationFragment +------ INS MethodInvocation TO VariableDeclarationFragment +--------- INS SimpleName TO MethodInvocation +--------- INS SimpleName TO MethodInvocation" +ReturnStatement-2-0-2," UPD ReturnStatement +--- INS SimpleName TO ReturnStatement" +TypeDeclaration-2-1-1," UPD TypeDeclaration +--- INS SimpleType TO TypeDeclaration" +MethodDeclaration-6-2-0," INS MethodDeclaration TO TypeDeclaration +--- INS Modifier TO MethodDeclaration +--- INS PrimitiveType TO MethodDeclaration +--- INS SimpleName TO MethodDeclaration +--- INS ReturnStatement TO MethodDeclaration +------ INS SimpleName TO ReturnStatement" +ReturnStatement-4-2-0," UPD ReturnStatement +--- UPD MethodInvocation +------ UPD SimpleName +--------- INS SimpleName TO SimpleName" +VariableDeclarationStatement-7-0-3," DEL VariableDeclarationStatement +--- DEL SimpleType +--- DEL VariableDeclarationFragment +------ DEL SimpleName +------ DEL MethodInvocation +--------- DEL SimpleName +--------- DEL SimpleName" +ThrowStatement-4-0-0," UPD ThrowStatement +--- UPD ClassInstanceCreation +------ UPD InfixExpression +--------- UPD StringLiteral" +MethodDeclaration-2-0-2," UPD MethodDeclaration +--- UPD Modifier" +ExpressionStatement-5-6-1," DEL ExpressionStatement +--- DEL Assignment +------ DEL SimpleName +------ DEL Operator +------ DEL BooleanLiteral" +VariableDeclarationStatement-4-0-1," INS VariableDeclarationStatement TO MethodDeclaration +--- INS SimpleType TO VariableDeclarationStatement +--- INS VariableDeclarationFragment TO VariableDeclarationStatement +------ INS SimpleName TO VariableDeclarationFragment" +VariableDeclarationStatement-11-0-0," INS VariableDeclarationStatement TO MethodDeclaration +--- INS ParameterizedType TO VariableDeclarationStatement +------ INS SimpleType TO ParameterizedType +------ INS SimpleType TO ParameterizedType +--- INS VariableDeclarationFragment TO VariableDeclarationStatement +------ INS SimpleName TO VariableDeclarationFragment +------ INS ClassInstanceCreation TO VariableDeclarationFragment +--------- INS New TO ClassInstanceCreation +--------- INS ParameterizedType TO ClassInstanceCreation +------------ INS SimpleType TO ParameterizedType +------------ INS SimpleType TO ParameterizedType" +TypeDeclaration-4-0-0," INS TypeDeclaration TO TypeDeclaration +--- INS Modifier TO TypeDeclaration +--- INS Modifier TO TypeDeclaration +--- INS SimpleName TO TypeDeclaration" +IfStatement-3-1-0," UPD IfStatement +--- UPD InfixExpression +------ UPD SimpleName" +VariableDeclarationStatement-5-2-2," DEL VariableDeclarationStatement +--- DEL SimpleType +--- DEL VariableDeclarationFragment +------ DEL SimpleName +------ DEL NullLiteral" +ThrowStatement-3-1-0," UPD ThrowStatement +--- UPD ClassInstanceCreation +------ UPD SimpleType" +MethodDeclaration-4-1-0," UPD MethodDeclaration +--- INS SingleVariableDeclaration TO MethodDeclaration +------ INS PrimitiveType TO SingleVariableDeclaration +------ INS SimpleName TO SingleVariableDeclaration" +VariableDeclarationStatement-7-0-6," INS VariableDeclarationStatement TO EnhancedForStatement +--- INS SimpleType TO VariableDeclarationStatement +--- INS VariableDeclarationFragment TO VariableDeclarationStatement +------ INS SimpleName TO VariableDeclarationFragment +------ INS MethodInvocation TO VariableDeclarationFragment +--------- INS SimpleName TO MethodInvocation +--------- INS SimpleName TO MethodInvocation" +FieldDeclaration-9-0-1," INS FieldDeclaration TO TypeDeclaration +--- INS Modifier TO FieldDeclaration +--- INS Modifier TO FieldDeclaration +--- INS SimpleType TO FieldDeclaration +--- INS VariableDeclarationFragment TO FieldDeclaration +------ INS SimpleName TO VariableDeclarationFragment +------ INS ClassInstanceCreation TO VariableDeclarationFragment +--------- INS New TO ClassInstanceCreation +--------- INS SimpleType TO ClassInstanceCreation" diff --git a/python/addNewData.py b/python/addNewData.py new file mode 100644 index 0000000..fe7bebb --- /dev/null +++ b/python/addNewData.py @@ -0,0 +1,142 @@ +from common.commons import * +DATA_PATH = os.environ["DATA_PATH"] + +def core(): + clusterPath = join(DATA_PATH, 'shapes') + roots = listdir(clusterPath) + roots = [i for i in roots if not (i.startswith('.') or i.endswith('.pickle'))] + pattern = {} + for root in roots: + root + sizes = listdir(join(clusterPath, root)) + for size in sizes: + # actions = listdir(join(clusterPath,root,size)) + # for action in actions: + clusters = listdir(join(clusterPath, root, size)) + for cluster in clusters: + members = listdir(join(clusterPath, root, size, cluster)) + + # pattern[root+'/'+size+'/'+cluster]= root +'/' +size +'/'+ members[0] + pattern[root+'/'+size+'/'+cluster]= members[0] + pattern + + from pairs import shapePairs + matches = shapePairs() + # 'FFmpeg','curl','nginx','openssl','redis','tmux','vlc'] + matches = matches[matches.file.apply(lambda x: x in list(pattern.values()) or not ( x.startswith('linux_') or x.startswith('FFmpeg_') or x.startswith('curl_') or x.startswith('nginx_') or x.startswith('openssl_') or x.startswith('redis_') or x.startswith('tmux_') or x.startswith('vlc_')))] + from pairs import createPairs + createPairs(matches) + # # # elif job == 'importShapesPairs': + from pairs import importShape + importShape() + +def checkWrongMembers(): + clusterPath = join(DATA_PATH, 'shapes') + roots = listdir(clusterPath) + roots = [i for i in roots if not (i.startswith('.') or i.endswith('.pickle'))] + pattern = {} + for root in roots: + root + sizes = listdir(join(clusterPath, root)) + for size in sizes: + # actions = listdir(join(clusterPath,root,size)) + # for action in actions: + clusters = listdir(join(clusterPath, root, size)) + for cluster in clusters: + members = listdir(join(clusterPath, root, size, cluster)) + sizeDict = {} + for s in [(i,os.path.getsize(join(clusterPath, root, size, cluster,i))) for i in members]: + sizeDict[s[1]] = s[0] + sizeDict + if len(sizeDict) > 1: + print(join(clusterPath, root, size, cluster)) + print(sizeDict.values()) + +def cluster(): + clusterPath = join(DATA_PATH, 'shapes') + roots = listdir(clusterPath) + roots = [i for i in roots if not (i.startswith('.') or i.endswith('.pickle'))] + pattern = {} + for root in roots: + root + sizes = listdir(join(clusterPath, root)) + for size in sizes: + # actions = listdir(join(clusterPath,root,size)) + # for action in actions: + clusters = listdir(join(clusterPath, root, size)) + for cluster in clusters: + members = listdir(join(clusterPath, root, size, cluster)) + + # pattern[root+'/'+size+'/'+cluster]= root +'/' +size +'/'+ members[0] + pattern[root+'/'+size+'/'+cluster]= members[0] + pattern + + pairsPath = join(DATA_PATH, 'pairs') + from abstractPatch import loadPairMulti + for root in roots: + matches =loadPairMulti(root,'','shapes') + matches + sizes = matches['sizes'].unique().tolist() + for s in sizes: + match = matches[matches['sizes'] == s] + match + clusterCore(pattern,clusterPath, 'shapes', match, pairsPath, root, s, '') + +def clusterCore(pattern,clusterPath, level, match, pairsPath, root, s,action ,token=''): + col_combi = match.tuples.values.tolist() + import networkx + g = networkx.Graph(col_combi) + cluster = [] + for subgraph in networkx.connected_component_subgraphs(g): + logging.info('Cluster size %d',len(subgraph.nodes())) + cluster.append(subgraph.nodes()) + cluster + pathMapping = dict() + if level == 'actions': + indexFile = join(pairsPath, root, s,action+'.index') + elif level == 'shapes': + indexFile = join(pairsPath, root, s + '.index') + else: + indexFile =join(pairsPath, root, s,action,token+'.index') + df = pd.read_csv(indexFile, header=None, usecols=[0, 1], index_col=[0]) + pathMapping = df.to_dict() + + workList = [] + + exportCLusters ={} + if not os.path.exists(join(clusterPath, root, s)): + print() + existingClusters = 0 + else: + existingClusters = len(listdir(join(clusterPath, root, s))) + + for clus in cluster: + members = [pathMapping[1][int(i)] for i in clus] + members + potentialClusters = [(key, value) for key, value in pattern.items() if key.startswith(root + '/' + s)] + potentialClusters + foundExisting = False + for pc,pcMember in potentialClusters: + if pcMember in members: + pc + foundExisting = True + exportCLusters[pc.split('/')[-1]] = members + if not foundExisting: + exportCLusters[existingClusters] = members + existingClusters= existingClusters+1 + exportCLusters + for k,v in exportCLusters.items(): + for f in v: + t = f, root, level, clusterPath, s, action, token, k + workList.append(t) + # for idx, clus in enumerate(cluster): + # logging.info('exporting cluster %s %s %s %d', root,s,action,idx) + # for f in clus: + # dumpFile = pathMapping[1][int(f)] + # + # t = dumpFile,root,level,clusterPath,s,action,token,idx + # workList.append(t) + from abstractPatch import dumpFilesCore + parallelRun(dumpFilesCore,workList) + # for wl in workList: + # dumpFilesCore(wl) diff --git a/python/bugReport.pdf b/python/bugReport.pdf new file mode 100644 index 0000000..22219f8 Binary files /dev/null and b/python/bugReport.pdf differ diff --git a/python/bugReportDownloader.py b/python/bugReportDownloader.py new file mode 100644 index 0000000..a0bf9a5 --- /dev/null +++ b/python/bugReportDownloader.py @@ -0,0 +1,132 @@ +from common.commons import * + +BUG_REPORT_PATH = os.environ["BUG_REPORT"] +DATA_PATH = os.environ["DATA_PATH"] +# BUG_POINT = os.environ["BUG_POINT"] +COMMIT_DFS = os.environ["COMMIT_DFS"] +from urllib.request import urlopen +from urllib import error +import urllib + +import socket + +timeout = 30 +socket.setdefaulttimeout(timeout) + +import logging +hdr = {'User-Agent': 'Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.64 Safari/537.11', + 'Accept': 'text/html,application/xhtml+xml,application/xml;q=0.9,*/*;q=0.8', + 'Accept-Charset': 'ISO-8859-1,utf-8;q=0.7,*;q=0.3', + 'Accept-Encoding': 'none', + 'Accept-Language': 'en-US,en;q=0.8', + 'Connection': 'keep-alive'} + +def bugRepoDict(): + brDict={} + brDict['CAMEL'] ='https://issues.apache.org/jira/browse/CAMEL-'#4748' + brDict['HBASE'] ='https://issues.apache.org/jira/browse/HBASE-'#84' + brDict['HIVE'] ='https://issues.apache.org/jira/browse/HIVE-'#3518' + brDict['CODEC'] ='https://issues.apache.org/jira/browse/CODEC-'#103' + brDict['COLLECTIONS'] ='https://issues.apache.org/jira/browse/COLLECTIONS-'#660' + brDict['COMPRESS'] ='https://issues.apache.org/jira/browse/COMPRESS-'#261' + brDict['CONFIGURATION'] ='https://issues.apache.org/jira/browse/CONFIGURATION-'#307' + brDict['CRYPTO'] ='https://issues.apache.org/jira/browse/CRYPTO-'#85' + brDict['CSV'] ='https://issues.apache.org/jira/browse/CSV-'#84' + brDict['IO'] ='https://issues.apache.org/jira/browse/IO-'#193' + brDict['LANG'] ='https://issues.apache.org/jira/browse/LANG-'#810' + brDict['MATH'] ='https://issues.apache.org/jira/browse/MATH-'#790' + brDict['WEAVER'] = 'https://issues.apache.org/jira/browse/WEAVER-' + brDict['ENTESB'] ='https://issues.jboss.org/browse/ENTESB-'#80' + brDict['JBMETA'] ='https://issues.jboss.org/browse/JBMETA-'#315' + brDict['ELY'] ='https://issues.jboss.org/browse/ELY-'#515' + brDict['SWARM'] ='https://issues.jboss.org/browse/SWARM-'#1710' + brDict['WFARQ'] ='https://issues.jboss.org/browse/WFARQ-'#14' + brDict['WFCORE'] ='https://issues.jboss.org/browse/WFCORE-'#1499' + brDict['WFLY'] ='https://issues.jboss.org/browse/WFLY-'#3717' + brDict['WFMP'] ='https://issues.jboss.org/browse/WFMP-'#85' + brDict['AMQP'] ='https://jira.spring.io/browse/AMQP-'#32' + brDict['ANDROID'] ='https://jira.spring.io/browse/ANDROID-'#131' + brDict['BATCH'] ='https://jira.spring.io/browse/BATCH-'#84' + brDict['BATCHADM'] ='https://jira.spring.io/browse/BATCHADM-'#22' + brDict['DATACMNS'] ='https://jira.spring.io/browse/DATACMNS-'#43' + brDict['DATAGRAPH'] ='https://jira.spring.io/browse/DATAGRAPH-'#869' + brDict['DATAJPA'] ='https://jira.spring.io/browse/DATAJPA-'#869' + brDict['DATAJPA'] ='https://jira.spring.io/browse/DATAJPA-'#43' + brDict['DATAMONGO'] ='https://jira.spring.io/browse/DATAMONGO-'#634' + brDict['DATAREDIS'] ='https://jira.spring.io/browse/DATAREDIS-'#680' + brDict['DATAREST']='https://jira.spring.io/browse/DATAREST-'#44' + brDict['LDAP'] ='https://jira.spring.io/browse/LDAP-'#64' #https://github.com/spring-projects/spring-ldap/issues/107 + brDict['MOBILE'] = 'https://jira.spring.io/browse/MOBILE-' + brDict['ROO'] ='https://jira.spring.io/browse/ROO-'#260' + brDict['SEC'] = 'https://jira.spring.io/browse/SEC-'#1880' #'https://github.com/spring-projects/spring-security/issues/2108' + brDict['SECOAUTH'] ='https://jira.spring.io/browse/SECOAUTH-'#42' + brDict['SGF'] ='https://jira.spring.io/browse/SGF-'#69' + brDict['SHDP'] ='https://jira.spring.io/browse/SHDP-'#444' + brDict['SHL'] ='https://jira.spring.io/browse/SHL-'#80' + brDict['SOCIAL'] ='https://jira.spring.io/browse/SOCIAL-'#33' + brDict['SOCIALFB'] ='https://jira.spring.io/browse/SOCIALFB-'#33' + brDict['SOCIALLI'] ='https://jira.spring.io/browse/SOCIALLI-'#33' + brDict['SOCIALTW'] ='https://jira.spring.io/browse/SOCIALTW-'#10' + brDict['SPR'] ='https://jira.spring.io/browse/SPR-'#6132' + brDict['SWF'] ='https://jira.spring.io/browse/SWF-'#80' + brDict['SWS'] ='https://jira.spring.io/browse/SWS-'#510' + brDict['AspectJ']='https://bugs.eclipse.org/bugs/show_bug.cgi?id=' + brDict['JDT'] ='https://bugs.eclipse.org/bugs/show_bug.cgi?id='#30113' + brDict['SWT'] ='https://bugs.eclipse.org/bugs/show_bug.cgi?id='#231787' + brDict['PDE'] ='https://bugs.eclipse.org/bugs/show_bug.cgi?id='#201369' + return brDict + +def downloadAll(x): + try: + pj,id = x.split('-') + links = bugRepoDict() + downloadLink = links[pj] + id + webRequest(downloadLink) + + except Exception as e: + print(e) + logging.error(e) + return False +def webRequest(x): + url = x + bugID = url.split('/')[-1:] + url = url + '?redirect=false' + + brLocation = join(BUG_REPORT_PATH,bugID[0] + ".xml") + if isfile(brLocation): + with open(brLocation, 'rb') as f: + the_page = p.load(f) + else: + try: + logging.info(url) + req = urllib.request.Request(url, headers=hdr) + + + response = urlopen(req) + the_page = response.read() + except error.HTTPError as err: + if err.code == 404: + print("Error: %s, reason: %s." % (err.code, err.reason)) + return None + p.dump(the_page, open(brLocation, "wb")) + +def caseBRDownload(subject): + + if not os.path.exists(BUG_REPORT_PATH): + os.mkdir(BUG_REPORT_PATH) + bids=[] + if subject == 'ALL': + for i in listdir(COMMIT_DFS): + commits = load_zipped_pickle(join(COMMIT_DFS, i)) + bids.extend(commits.fix.values.tolist()) + else: + subjects = pd.read_csv(join(DATA_PATH, 'subjects.csv')) + + subjects = subjects.query("Subject == '{0}'".format(subject)) + + commits = load_zipped_pickle(join(COMMIT_DFS, subjects.iloc[0].Repo + '.pickle')) + bids.extend(commits.fix.values.tolist()) + + + + parallelRun(downloadAll,bids) diff --git a/python/bugReportParser.py b/python/bugReportParser.py new file mode 100644 index 0000000..7569567 --- /dev/null +++ b/python/bugReportParser.py @@ -0,0 +1,210 @@ +from common.commons import * + +# CODE_PATH = os.environ["CODE_PATH"] +DATA_PATH = os.environ["DATA_PATH"] +BUG_REPORT_PATH = os.environ["BUG_REPORT"] +COMMIT_DFS = os.environ["COMMIT_DFS"] + +import bs4 as bs + +import re +def parseCore(br): + columns = ['bugReport', 'summary', 'description','created','updated','resolved','reporterDN','reporterEmail','hasAttachment','attachmentTime','hasPR','commentsCount'] + bugReport = pd.DataFrame(columns=columns) + ind = 0 + if isfile(join(BUG_REPORT_PATH, br)): + + with open(join(BUG_REPORT_PATH, br), 'rb') as f: + the_page = p.load(f) + soup = bs.BeautifulSoup(the_page, "html.parser") + + if not (br.startswith('show')): + + type = soup.find('span', {'id': 'type-val'}) + status = soup.find('span', {'id': 'status-val'}) + + if type is None: + # print(br) + return; + if (type.text.strip() == 'Bug' or type.text.strip() =='Defect'): + if (status.text.strip() == 'Resolved' or status.text.strip() == 'Closed'): + + summary = soup.find('h1', {'id': 'summary-val'}).text + desc = soup.find('div', {'id': 'description-val'}) + + created= soup.find('span', {'data-name': 'Created'}).time['datetime'] + updated = soup.find('span', {'data-name': 'Updated'}).time['datetime'] + resolved = soup.find('span', {'data-name': 'Resolved'}).time['datetime'] + + # jboss reporter is different + reporterField = soup.find('span',{'id':'reporter-val'}) + try: + reporterInfo= reporterField.findAll('span', {'class': 'user-hover'})[0]['data-user'] + reporterDict = eval(reporterInfo) + reporterDN = reporterDict['displayName'] + reporterEmail = reporterDict['emailAddress'] + except KeyError as e: + + e + reporterDN = reporterField.text.strip() + reporterEmail = None + except Exception as e: + e + reporterDN = reporterField.text.strip() + reporterEmail = None + + attachment = soup.find('dd', {'class': 'attachment-date'}) + isAttachment = False + isPR = False + attachmentTime = None + if attachment is not None and len(attachment) > 0: + attachmentTime = attachment.parent.time['datetime'] + isAttachment = True + + hasPullReq = soup.find('strong', {'title': 'Git Pull Request'}) + if hasPullReq is not None: + haveAttachment = hasPullReq.parent.findAll('a') + if(haveAttachment is not None and len(haveAttachment)>0): + isPR = True + else: + linkPullRequest = soup.find('ul', {'id': 'issuedetails'}).find('a', {'title': 'PullRequest'}) + if(linkPullRequest is not None and len(linkPullRequest)> 0): + isPR = True + + commentsCount = len(re.findall(r'\"comment-[0-9]+', soup.getText())) + if desc is not None: + # bugReport.loc[ind] = [br, summary, desc.text,created,updated,resolved,reporterDN,reporterEmail,isAttachment,attachmentTime,isPR,commentsCount] + return [br, summary, desc.text, created, updated, resolved, reporterDN, + reporterEmail, isAttachment, attachmentTime, isPR, commentsCount] + # ind += 1 + else: + # bugReport.loc[ind] = [br, summary, None, created, updated, resolved, reporterDN, reporterEmail, + # isAttachment,attachmentTime,isPR,commentsCount] + return [br, summary, None, created, updated, resolved, reporterDN, reporterEmail, + isAttachment,attachmentTime,isPR,commentsCount] + # ind += 1 + # else: + # print(type.text.strip()) + else: + importance = ( + soup.find('a', {'href': 'page.cgi?id=fields.html#importance'}).parent.parent.parent.td.text.strip()) + status = soup.find('span', {'id': 'static_bug_status'}).text.strip() + + m1 = re.search('enhancement', importance, re.IGNORECASE) + # if not m: + # print(br) + if not m1: + m = re.search('FIXED|DUPLICATE', status) + if m: + summary = soup.find('span', {'id': 'short_desc_nonedit_display'}).text + comment0 = soup.find('div', {'id': 'c0'}) + if comment0.find('a').text == 'Description': + desc = comment0.find('pre', {'class': 'bz_comment_text'}).text + bugReport.loc[ind] = [br, summary, desc] + ind += 1 + # desc + # return bugReport + +def parallelRun(coreFun,elements,*args): + with concurrent.futures.ProcessPoolExecutor() as executor: + try: + dataL = [] + futures = {executor.submit(coreFun, l,*args): l for l in elements} + for future in concurrent.futures.as_completed(futures): + url = futures[future] + try: + data = future.result() + dataL.append(data) + + except Exception as exc: + logging.error('%r generated an exception: %s' % (url, exc)) + raise + + kwargs = { + 'total': len(futures), + 'unit': 'files', + 'unit_scale': True, + 'leave': False + } + # Print out the progress as tasks complete + for f in tqdm(concurrent.futures.as_completed(futures), **kwargs): + pass + newData = pd.concat(dataL) + return newData + except Exception as e: + executor.shutdown() + raise + +def getCommitter(x): + subject = x.split('-')[0] + subjects = pd.read_csv(join(DATA_PATH, 'subjects.csv')) + repo = subjects.query("Subject == '{0}'".format(subject)).Repo.tolist()[0] + commits = load_zipped_pickle(join(COMMIT_DFS, repo+'.pickle')) + commits + committer = commits.query("fix =='{0}'".format(x)).committer.tolist() + # print(len(committer)) + return committer + + + +def step1(subject): + + if subject == 'ALL': + bids = os.listdir(BUG_REPORT_PATH) + else: + bids = [f for f in os.listdir(BUG_REPORT_PATH) if f.startswith(subject)] + bids = [i for i in bids if not i.startswith('.')] + + # bids = bids[:100] + + + + dataL = parallelRunMerge(parseCore,bids) + logging.info('Finish parsing') + # list(filter(None.__ne__, dataL)) + br = pd.DataFrame( + columns=['bugReport', 'summary', 'description', 'created', 'updated', 'resolved', 'reporterDN', 'reporterEmail', + 'hasAttachment', 'attachmentTime', 'hasPR', 'commentsCount'], data=list(filter(None.__ne__, dataL))) + # br = pd.concat(dataL) + logging.info('Finish parsing') + br['project'] = br.bugReport.apply(lambda x: x.split('-')[0]) + br['bid'] = br.bugReport.apply(lambda x: x.split('.')[0]) + br['committerEmail'] = br.bid.apply(lambda x: getCommitter(x)) + + br['sameEmail'] = br.apply(lambda x:x['reporterEmail'] in x['committerEmail'],axis=1) + subjects = pd.read_csv(join(DATA_PATH, 'subjects.csv')) + subjects['Group']=subjects.Group.apply(lambda x:x.replace('Commons','Apache').replace('Wildfly','Jboss').upper()) + save_zipped_pickle(br,join(DATA_PATH,subject+"bugReportsComplete.pickle")) + + +def step3(subject): + subjects = pd.read_csv(join(DATA_PATH, 'subjects.csv')) + subjects['Group']=subjects.Group.apply(lambda x:x.replace('Commons','Apache').replace('Wildfly','Jboss').upper()) + + stats = load_zipped_pickle(join(DATA_PATH, subject + "bugReportsComplete.pickle")) + + stats = stats[['bugReport', 'sameEmail', 'hasAttachment','attachmentTime','hasPR', 'created','codeElements','stackTraces','summaryHints','descHints','commentsCount']] + stats['project'] =stats.bugReport.apply(lambda x:x.split('-')[0]) + stats['project'] = stats.project.apply(lambda x: subjects.query("Subject == '{0}'".format(x)).Group.tolist()[0]+'-'+x) + stats['created'] = stats['created'].apply(lambda x: pd.to_datetime(x)) + stats['attachmentTime'] = stats['attachmentTime'].apply(lambda x: pd.to_datetime(x)) + stats['isAttach'] = (stats['attachmentTime'] - stats['created']) < pd.Timedelta(1, unit='h') + stats['hints'] = stats.apply(lambda x: True if len(x['summaryHints']) > 0 or len(x['descHints']) > 0 else False, + axis=1) + + stats['commentsCount'].to_csv(subject+'Comments', index=False) + + a = stats.groupby('project').agg({'sameEmail': "sum", 'isAttach': "sum"}) + a['avgComments'] =stats['commentsCount'].mean() + a['hasStackTraces'] = len([i for i in stats['stackTraces'].str.len().tolist() if i != 0]) + a['hasHints']= len([i for i in stats['hints'].tolist() if i == True]) + a['hasCE']= len([i for i in stats['codeElements'].str.len().tolist() if i != 0]) + + a['no'] = len(stats) + + a.to_latex(join(DATA_PATH,subject+'datasetQuality.tex')) + +def caseBRParser(subject): + step1(subject) + # step2() + # step3() \ No newline at end of file diff --git a/python/bugstats.py b/python/bugstats.py new file mode 100644 index 0000000..aa9be1c --- /dev/null +++ b/python/bugstats.py @@ -0,0 +1,233 @@ +from common.commons import * +DATA_PATH = os.environ["DATA_PATH"] +PROJECT_TYPE = os.environ["PROJECT_TYPE"] + + +def bStats(): + if isfile(join(DATA_PATH, 'studyBugReports.pickle')): + studyBugReports = load_zipped_pickle(join(DATA_PATH, 'studyBugReports.pickle')) + else: + brs = load_zipped_pickle(join(DATA_PATH, args.subject + "bugReportsComplete.pickle")) + commits = load_zipped_pickle(join(DATA_PATH, 'singleBR.pickle')) + + dbDir = join(DATA_PATH, 'redis') + + portInner = '6399' + startDB(dbDir, portInner, PROJECT_TYPE) + + import redis + + redis_db = redis.StrictRedis(host="localhost", port=portInner, db=0) + keys = redis_db.scan(0, match='*', count='1000000') + + matches = pd.DataFrame(keys[1], columns=['pairs_key']) + + # matches = load_zipped_pickle(join(DATA_PATH,'singleHunks')) + matches['pairs_key'] = matches['pairs_key'].apply(lambda x: x.decode()) + matches['root'] = matches['pairs_key'].apply(lambda x: x.split('/')[0]) + matches['size'] = matches['pairs_key'].apply(lambda x: x.split('/')[1]) + matches['file'] = matches['pairs_key'].apply(lambda x: x.split('/')[2]) + matches['repo'] = matches['file'].apply(lambda x: x.split('_')[0]) + matches['commit'] = matches['file'].apply(lambda x: x.split('_')[1]) + + subjects = pd.read_csv(join(DATA_PATH, 'subjects.csv')) + + def getBID(x): + try: + if x['repo'].endswith('.git'): + return None + subject = subjects.query("Repo == '{0}'".format(x['repo'])).Subject.tolist()[0] + bids = commits.query( + "commit.str.startswith('{0}') and project== '{1}'".format(x['commit'], subject)).bid.tolist() + return bids[0] + except Exception as e: + logging.error(e) + + matches = matches[~matches.repo.apply( + lambda i: (i.startswith('commons-math') or i.startswith('commons-lang') or i.startswith( + 'closure-compiler') or i.startswith('joda-time') or i.startswith('mockito') or i.startswith( + 'jfreechart')))] + matches['bid'] = matches.apply(lambda x: getBID(x), axis=1) + + subjects + # res = pd.merge(matches, brs, on=['bid']) + save_zipped_pickle(matches, join(DATA_PATH, 'studyDataset.pickle')) + studyBugReports = brs[brs.bid.isin(matches.bid.unique())] + save_zipped_pickle(studyBugReports, join(DATA_PATH, 'studyBugReports.pickle')) + if isfile(join(DATA_PATH, 'studyBR_DTM_index')): + brIndexes = load_zipped_pickle(join(DATA_PATH, 'studyBR_DTM_index')) + bugDTM = load_zipped_pickle(join(DATA_PATH, 'studyBR_DTM')) + vectorDF = load_zipped_pickle(join(DATA_PATH, 'studyBR_vector')) + matches = load_zipped_pickle(join(DATA_PATH, 'studyDataset.pickle')) + else: + studyBugReports['description'] = studyBugReports['description'].fillna("") + studyBugReports['sumDesc'] = studyBugReports['summary'] + studyBugReports['description'] + # corpus['sumDesc'] = corpus['summary'] + corpus['desc'] + # from common.preprocessing import + # result, aVector = getVectorAndDtm(corpus, 'summary') + from common.preprocessing import calculateTfIdfNLList + + corpusBug = studyBugReports['sumDesc'].values.tolist() + from common.preprocessing import preprocessingNL + + preCorpusBug = list(map(preprocessingNL, corpusBug)) + + v = calculateTfIdfNLList(preCorpusBug) + bugDTM = v.transform(preCorpusBug) + bugDTM + save_zipped_pickle(bugDTM, join(DATA_PATH, 'studyBR_DTM')) + brIndexes = studyBugReports['bid'].values.tolist() + + save_zipped_pickle(brIndexes, join(DATA_PATH, 'studyBR_DTM_index')) + # from sklearn.metrics.pairwise import cosine_similarity + # cosine_similarity(bugDTM[11701], bugDTM[11111]) + vectorDF = pd.DataFrame(columns=['bid', 'dtm']) + # idx = 0 + for idx, val in enumerate(brIndexes): + vectorDF.loc[idx] = [val, bugDTM[idx]] + vectorDF + + save_zipped_pickle(vectorDF, join(DATA_PATH, 'studyBR_vector')) + + matches + if isfile(join(DATA_PATH, 'study_clusters')): + clustersDF = load_zipped_pickle(join(DATA_PATH, 'study_clusters')) + else: + clustersDF = pd.DataFrame(columns=['cid', 'type', 'members']) + idx = 0 + + def statsCore(cs, type): + global idx + + cs = [i for i in cs if not (i.startswith('commons-math') or i.startswith('commons-lang') or i.startswith( + 'closure-compiler') or i.startswith('joda-time') or i.startswith('mockito') or i.startswith( + 'jfreechart'))] + # print('Cluster %s : member size %s' % (shape+"-"+size +"-"+cluster, len(cs))) + if len(cs) > 0: + if token is None: + if action is None: + t = shape + "-" + size + "-" + cluster + + clustersDF.loc[idx] = [t, type, cs] + idx = idx + 1 + else: + t = shape + "-" + size + "-" + cluster + "-" + action # , len(cs) + clustersDF.loc[idx] = [t, type, cs] + idx = idx + 1 + else: + # clusterSize = len(cs) + # if clusterSize > 0: + # clusterSize = len(set([re.split('.txt_[0-9]+', i)[0] for i in cs])) + t = shape + "-" + size + "-" + cluster + "-" + action + "-" + token # , clusterSize + clustersDF.loc[idx] = [t, type, cs] + idx = idx + 1 + + for type in ['tokens', 'actions', 'shapes']: + shapesPath = join(DATA_PATH, type) + shapes = listdir(shapesPath) + shapes = [f for f in shapes if isdir(join(shapesPath, f))] + shape = size = cluster = action = token = None + + for shape in shapes: + if shape.startswith('.'): + continue + sizes = listdir(join(shapesPath, shape)) + + for size in sizes: + if size.startswith('.'): + continue + clusters = listdir(join(shapesPath, shape, size)) + for cluster in clusters: + if cluster.startswith('.'): + continue + cs = listdir(join(shapesPath, shape, size, cluster)) + + if shapesPath.endswith('shapes'): + cs = listdir(join(shapesPath, shape, size, cluster)) + statsCore(cs, 'shapes') + else: + # level3 + for action in cs: + if action.startswith('.'): + continue + tokens = listdir(join(shapesPath, shape, size, cluster, action)) + if shapesPath.endswith('actions'): + statsCore(tokens, 'actions') + else: + for token in tokens: + if token.startswith('.'): + continue + cs = listdir(join(shapesPath, shape, size, cluster, action, token)) + statsCore(cs, 'tokens') + + clustersDF + save_zipped_pickle(clustersDF, join(DATA_PATH, 'study_clusters')) + clustersDF + + # selected = clustersDF[clustersDF.type =='shapes'] + + from sklearn.metrics.pairwise import cosine_similarity + # cosine_similarity(bugDTM[11701], bugDTM[11111]) + def getSimilarity(x): + try: + if len(x) == 1: + return [1] + else: + filenames = list(set([re.split('.txt_[0-9]+', i)[0] for i in x])) + if len(filenames) == 1: + return [1] + else: + bids2Compare = [matches[matches.file.str.startswith(fn)].bid.unique()[0] for fn in filenames] + + pairs = list(itertools.combinations(bids2Compare, 2)) + pairs + res = [] + for p in pairs: + p + simi = cosine_similarity(vectorDF[vectorDF.bid == p[0]].iloc[0].dtm, + vectorDF[vectorDF.bid == p[1]].iloc[0].dtm) + res.append(simi[0][0]) + return res + except Exception as e: + logging.error(e) + + # import swifter + clustersDF['simi'] = clustersDF.members.apply(lambda x: getSimilarity(x)) + save_zipped_pickle(clustersDF, join(DATA_PATH, 'study_clusters')) + + clustersDF + + shapes = clustersDF[clustersDF.type == 'shapes'] + actions = clustersDF[clustersDF.type == 'actions'] + tokens = clustersDF[clustersDF.type == 'tokens'] + + # shapes + # yList = [list(itertools.chain.from_iterable(shapes.simi.values.tolist())), + # list(itertools.chain.from_iterable(actions.simi.values.tolist())), + # list(itertools.chain.from_iterable(tokens.simi.values.tolist()))] + # colNames = ['shapes','actions','tokens'] + + ys = [] + cols = [] + means = [] + # plotBox(yList, colNames, 'bugReport' + '.pdf', True) + for ds in [shapes, actions, tokens]: + ds['ms'] = ds.members.str.len() + ds.sort_values(by=['ms'], ascending=False, inplace=True) + top10 = ds.head(20) + + colNames = top10.cid.values.tolist() + # colNames = [0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19] + colNames = list(range(len(colNames))) + yList = yList = top10.simi.values.tolist() + # yList = [np.mean(i) for i in yList] + # colNames.insert(0,'ALL') + # yList.insert(0,list(itertools.chain.from_iterable(ds.simi.values.tolist()))) + mean = np.mean(list(itertools.chain.from_iterable(ds.simi.values.tolist()))) + type = ds.type.iloc[0] + # from common.commons import plotBox + # plotBox(yList,colNames,type+'.pdf',False) + ys.append(yList) + cols.append(colNames) + means.append(mean) + plotBox2(ys, cols, 'test.pdf', means, False) diff --git a/python/commitCollector.py b/python/commitCollector.py new file mode 100644 index 0000000..d879f85 --- /dev/null +++ b/python/commitCollector.py @@ -0,0 +1,77 @@ + + +from common.commons import * + +REPO_PATH = os.environ["REPO_PATH"] +DATA_PATH = os.environ["DATA_PATH"] +COMMIT_DFS = os.environ["COMMIT_DFS"] +COMMIT_FOLDER = os.environ["COMMIT_FOLDER"] + +def getCommitFromRepo(f,gitrepo,branch): + cmd = 'git -C ' + f + ' checkout -f ' + branch + + output, err = shellGitCheckout(cmd) + m = re.search(branch, err) + + while not m: + time.sleep(10) + logging.info('Waiting for checkout') + cmd = 'git -C ' + f + " log --no-merges --pretty=format:'{\"commit\":\"%H\",\"commitDate\":\"%ci\",\"title\":\"%f\",\"committer\":\"%ce\"}' > " + gitrepo + '.commits' + output = shellCallTemplate(cmd,enc='latin1') + + +def makeDF(filename): + with open(filename,encoding='latin1') as f: + lines = f.readlines() + ls = [eval(f) for f in lines] + ds = pd.DataFrame.from_dict(ls) + ds['commitDate']= ds['commitDate'].apply(lambda x:pd.to_datetime(x)) + return ds + + +def caseCollect(subject): + + if not os.path.exists(COMMIT_FOLDER): + os.mkdir(COMMIT_FOLDER) + if not os.path.exists(COMMIT_DFS): + os.mkdir(COMMIT_DFS) + + subjects = pd.read_csv(join(DATA_PATH, 'subjects.csv')) + if subject == 'ALL': + tuples = subjects[['Repo', 'Branch']].values.tolist() + else: + # repos = subjects.query("Subject == '{0}'".format(subject)).Repo.tolist() + tuples = subjects.query("Subject == '{0}'".format(subject))[['Repo', 'Branch']].values.tolist() + + for t in tuples: + repo,branch = t + logging.info(repo) + getCommitFromRepo(join(REPO_PATH, repo), join(COMMIT_FOLDER, repo),branch) + + if subject == 'ALL': + commits = listdir(COMMIT_FOLDER) + else: + commits = [i for i in listdir(COMMIT_FOLDER) if i.startswith(repo)] + + for commit in commits: + logging.info(commit) + rDF = makeDF(join(COMMIT_FOLDER, commit)) + repoName = commit.split('.')[0] + save_zipped_pickle(rDF, join(COMMIT_DFS, repoName + ".pickle")) + # p.dump(rDF, open(join(COMMIT_DFS, repoName + ".pickle"), "wb")) + +def caseClone(subject): + if not os.path.exists(REPO_PATH): + os.mkdir(REPO_PATH) + + subjects = pd.read_csv(join(DATA_PATH, 'subjects.csv')) + if subject == 'ALL': + gitrepos = subjects.GitRepo.tolist() + else: + gitrepos = subjects.query("Subject == '{0}'".format(subject)).GitRepo.tolist() + os.getcwd() + os.chdir(REPO_PATH) + for gitrepo in gitrepos: + cmd = 'git clone ' + gitrepo + out = shellCallTemplate(cmd) + diff --git a/python/common/__init__.py b/python/common/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/python/common/commons.py b/python/common/commons.py new file mode 100644 index 0000000..fa49807 --- /dev/null +++ b/python/common/commons.py @@ -0,0 +1,748 @@ + +import logging +import sys +import gzip +import numpy as np +from tqdm import tqdm +import shutil +import itertools + +# COMMIT_FOLDER = 'commits/' +from os import listdir +import re +import pandas as pd +from os.path import isfile, join, isdir +import pickle as p +from subprocess import Popen, PIPE +from subprocess import CalledProcessError +from subprocess import TimeoutExpired +import pickle as p +import os +import concurrent.futures + +import time +import math +from collections import Counter + +import datetime +import subprocess + + +sourceCodeColumns = ['packageName', 'className', 'methodNames', 'formalParameter', + 'methodInvocation', 'memberReference', 'documentation', 'literal', 'rawSource', 'hunks', + 'commitLogs', 'classNameExt'] + + +def nap(): + time.sleep(1) + +def setLogg(): + # logging.basicConfig(filename='app.log', filemode='w',level=logging.DEBUG) + root = logging.getLogger() + root.setLevel(logging.DEBUG) + + ch = logging.StreamHandler(sys.stdout) + ch.setLevel(logging.WARNING) + formatter = logging.Formatter('%(asctime)s - %(process)d - %(levelname)s - %(filename)s:%(funcName)s - %(message)s') + ch.setFormatter(formatter) + # ch.addFilter(lambda record: record.levelno <= logging.) + root.addHandler(ch) + + # # 2 handlers for the same logger: + # h1 = logging.StreamHandler(sys.stdout) + # h1.setLevel(logging.DEBUG) + # # filter out everything that is above INFO level (WARN, ERROR, ...) + # h1.addFilter(lambda record: record.levelno <= logging.INFO) + # h1.setFormatter(formatter) + # root.addHandler(h1) + + h2 = logging.FileHandler(filename='app.log', mode='w') + # take only warnings and error logs + h2.setLevel(logging.DEBUG) + h2.setFormatter(formatter) + root.addHandler(h2) + +def setEnv(args): + # env = args.env + + # logging.info('Environment: %s',env) + + os.environ["ROOT_DIR"] = args.root + sys.path.append(args.root) + + + import yaml + if os.uname().nodename != '': + with open(join(os.environ["ROOT_DIR"], os.uname().nodename + ".config.yml"), 'r') as ymlfile: + cfg = yaml.load(ymlfile) + else: + with open(join(os.environ["ROOT_DIR"], "config.yml"), 'r') as ymlfile: + cfg = yaml.load(ymlfile) + + # for section in cfg: + # print(section) + # print(cfg['mysql']) + # print(cfg['other']) + + # os.environ["JDK7"] = cfg['java']['7home'] + os.environ["JDK8"] = cfg['java']['8home'] + os.environ["spinfer"] = cfg['spinfer']['home'] + os.environ["coccinelle"] = cfg['coccinelle']['home'] + os.environ["dataset"] = cfg['dataset']['home'] + os.environ["REPO_PATH"] = cfg['dataset']['repo'] + os.environ["DATA_PATH"] = cfg['fixminer']['datapath'] + os.environ["PROJECT_TYPE"] = cfg['fixminer']['projectType'] + + # import yaml + # + # with open(join(os.environ["ROOT_DIR"],"config.yml"), 'r') as ymlfile: + # cfg = yaml.load(ymlfile) + # + # # for section in cfg: + # # print(section) + # # print(cfg['mysql']) + # # print(cfg['other']) + # + # os.environ["JDK7"] = cfg['java']['7home'] + # os.environ["JDK8"] = cfg['java']['8home'] + # os.environ["D4JHOME"] = cfg['defects4j']['home'] + + + os.environ["CODE_PATH"] = join(os.environ["ROOT_DIR"],'code/') + # os.environ["DATA_PATH"] = join(os.environ["ROOT_DIR"],'data/') + # os.environ["REPO_PATH"] = join(os.environ["DATA_PATH"], 'gitrepo/') + os.environ["COMMIT_DFS"]= join(os.environ["DATA_PATH"],'commitsDF/') + os.environ["SIMI_DIR"]= join(os.environ["DATA_PATH"],'simi/') + os.environ["DTM_PATH"] = join(os.environ["DATA_PATH"], 'dtm/') + os.environ["SIMI_SINGLE"] = join(os.environ["DATA_PATH"], 'simiSingle/') + os.environ["FEATURE_DIR"] = join(os.environ["DATA_PATH"],'features/') + + os.environ["BUG_POINT"] = join(os.environ["DATA_PATH"], 'bugPoints/') + os.environ["DEFECTS4J"] = join(os.environ["DATA_PATH"], 'defects4jdata/') + + os.environ["BUG_REPORT"] = join(os.environ["DATA_PATH"], 'bugReports/') + os.environ["BUG_REPORT_FEATURES"] = join(os.environ["DATA_PATH"], 'bugReportFeatures/') + # os.environ["PARSED_DIR"] = join(os.environ["CODE_PATH"], 'parsedFilesSingle/') + # os.environ["PARSED_M_DIR"] = join(os.environ["CODE_PATH"], 'parsedFilesMulti/') + + os.environ["PARSED"] = join(os.environ["DATA_PATH"], 'parsedPj/') + os.environ["PARSED_DIR"] = join(os.environ["DATA_PATH"], 'parsedFilesSingle/') + os.environ["COMMIT_FOLDER"] = join(os.environ["DATA_PATH"], 'commits/') + os.environ["CLASSIFIER_DIR"] = join(os.environ["DATA_PATH"], 'classifiers/') + os.environ["PREDICTION_DIR"] = join(os.environ["DATA_PATH"], 'predictions/') + os.environ["DATASET_DIR"] = join(os.environ["DATA_PATH"], 'datasets/') + os.environ["REMOTE_PATH"] = '/Volumes/Samsung_T5/data' + + + + + + logging.info('ROOT_DIR : %s', os.environ["ROOT_DIR"]) + logging.info('REPO_PATH : %s', os.environ["REPO_PATH"]) + logging.info('CODE_PATH : %s', os.environ["CODE_PATH"]) + logging.info('COMMIT_DFS : %s', os.environ["COMMIT_DFS"]) + # logging.info('SIMI_DIR : %s', os.environ["SIMI_DIR"]) + logging.info('BUG_POINT : %s', os.environ["BUG_POINT"]) + # logging.info('PARSED_DIR : %s', os.environ["PARSED_DIR"]) + logging.info('COMMIT_FOLDER : %s', os.environ["COMMIT_FOLDER"]) + # logging.info('DTM_PATH : %s', os.environ["DTM_PATH"]) + # logging.info('SIMI_SINGLE : %s', os.environ["SIMI_SINGLE"]) + logging.info('FEATURE_DIR : %s', os.environ["FEATURE_DIR"]) + logging.info('CLASSIFIER_DIR : %s', os.environ["CLASSIFIER_DIR"]) + logging.info('PREDICTION_DIR : %s', os.environ["PREDICTION_DIR"]) + logging.info('DATASET_DIR : %s', os.environ["DATASET_DIR"]) + + + +def getRun(): + import argparse + parser = argparse.ArgumentParser(description='') + # parser.add_argument('-subject', dest='subject', help='Environment') + parser.add_argument('-root', dest='root', help='root folder') + parser.add_argument('-job',dest='job',help='job name') + + + args = parser.parse_args() + + if args.root is None or args.job is None: + parser.print_help() + raise AttributeError + return args + + + + + +def shellCallTemplate(cmd,enc='utf-8'): + try: + logging.info(cmd) + with Popen(cmd, stdout=PIPE, stderr=PIPE, shell=True,encoding=enc) as p: + output, errors = p.communicate() + # print(output) + if errors: + m = re.search('unknown revision or path not in the working tree', errors) + if not m: + raise CalledProcessError(errors, '-1') + output + except CalledProcessError as e: + logging.error(errors) + except Exception as e: + logging.error(e) + return output + +def getChildMem(pid,children): + + out = subprocess.Popen(['pgrep', '-P', str(pid)], + stdout=subprocess.PIPE).communicate()[0].split(b'\n') + child = out[0].decode() + if child !='': + children.append(child) + getChildMem(child,children) + else: + return children + +def getAllChildMe(pid): + + childrenProcess = [] + getChildMem(pid,childrenProcess) + + # if child == '': + return sum(map(memory_usage_ps,childrenProcess)) + memory_usage_ps(pid) + # else: + # return memory_usage_ps(child) + memory_usage_ps(pid) +def memory_usage_ps(pid): + import subprocess + out = subprocess.Popen(['ps', 'v', '-p', str(pid)], + stdout=subprocess.PIPE).communicate()[0].split(b'\n') + vsz_index = out[0].split().index(b'RSS') + if out[1].decode() != '': + mem = float(out[1].split()[vsz_index]) / 1024 + else: + mem = float(0) + return mem + +def raiseTime(cmd,timeout,my_timer): + my_timer.cancel() + raise TimeoutExpired(cmd, timeout) + +def killP(pid): + out = subprocess.Popen(['kill', str(pid)], + stdout=subprocess.PIPE).communicate()[0].split(b'\n') + out + + +def shellGitCheckout(cmd,timeout =600,enc='utf-8'): + output = '' + errors = '' + # logging.debug(cmd) + + with Popen(cmd, stdout=PIPE, stderr=PIPE, shell=True,encoding=enc) as p: + try: + output, errors = p.communicate(timeout=timeout) + # print(output) + logging.debug(cmd + '\t' +output) + # logging.info(errors) + if errors: + raise CalledProcessError(errors, '-1') + output + except CalledProcessError as e: + logging.debug(cmd +'\t'+ errors) + except TimeoutExpired as t: + p.terminate() + p.communicate() + # p.kill() + logging.warning(cmd +'\t'+str(t)) + return output,errors + +def callSpinfer(cmd,timeout =600,enc='utf-8'): + output = '' + errors = '' + # logging.debug(cmd) + my_timer = None + with Popen(cmd, stdout=PIPE, stderr=PIPE, shell=True,encoding=enc) as p: + try: + start = datetime.datetime.now() + memusage = getAllChildMe(p.pid) + # isExit = False + while(memusage != 0.0): + end = datetime.datetime.now() + elapsed = end - start + if(elapsed.seconds > timeout): + raise TimeoutExpired(cmd,timeout) + memusage = getAllChildMe(p.pid) + # print(str(p.pid) + " ; " + str(memusage)) + if memusage > 2000: + # isExit = True + raise TimeoutExpired(cmd,timeout) + + output, errors = p.communicate(timeout=timeout) + # print(output) + logging.debug(cmd + '\t' +output) + # logging.info(errors) + if errors: + raise CalledProcessError(errors, '-1') + output + except CalledProcessError as e: + logging.debug(cmd +'\t'+ errors) + except TimeoutExpired as t: + # my_timer.cancel() + + + childrenProcess = [] + getChildMem(p.pid, childrenProcess) + [killP(i) for i in childrenProcess] + + p.terminate() + p.communicate() + # p.kill() + logging.warning(cmd +'\t'+str(t)) + return output,errors + +def save_zipped_pickle(obj, filename, protocol=-1): + with gzip.open(filename, 'wb') as f: + p.dump(obj, f, protocol) + +def load_zipped_pickle(filename): + with gzip.open(filename, 'rb') as f: + loaded_object = p.load(f) + return loaded_object + +def file2path(file): + count = file.count(".") - 1 + file = file.replace('.', '/', count) + return file + +def isFileInList(file,checkList): + for f in checkList: + if f in file: + return True + return False + # [i for i in ansFiles if 'org/fusesource/esb/itests/basic/fabric/EsbFeatureTest.java' in i] + +def get_venn_sections(sets): + """ + Given a list of sets, return a new list of sets with all the possible + mutually exclusive overlapping combinations of those sets. Another way + to think of this is the mutually exclusive sections of a venn diagram + of the sets. If the original list has N sets, the returned list will + have (2**N)-1 sets. + + Parameters + ---------- + sets : list of set + + Returns + ------- + combinations : list of tuple + tag : str + Binary string representing which sets are included / excluded in + the combination. + set : set + The set formed by the overlapping input sets. + """ + num_combinations = 2 ** len(sets) + bit_flags = [2 ** n for n in range(len(sets))] + flags_zip_sets = [z for z in zip(bit_flags, sets)] + + #combo_sets = [] + combo_sets = dict() + for bits in range(num_combinations - 1, 0, -1): + include_sets = [s for flag, s in flags_zip_sets if bits & flag] + exclude_sets = [s for flag, s in flags_zip_sets if not bits & flag] + combo = set.intersection(*include_sets) + combo = set.difference(combo, *exclude_sets) + tag = ''.join([str(int((bits & flag) > 0)) for flag in bit_flags]) + #combo_sets.append((tag, combo)) + combo_sets[tag] = combo + return combo_sets + +def pairwise(iterable): + "s -> (s0,s1), (s1,s2), (s2, s3), ..." + a, b = itertools.tee(iterable) + next(b, None) + return zip(a, b) + +def RR_XGB(x,ao,column): + if x[ao] == 1: + return (1.0 / (x[column])) + elif pd.isnull(x[ao]): + return None + else: + return 0 + +def parallelRunNo(coreFun,elements,*args): + with concurrent.futures.ProcessPoolExecutor(max_workers=int(8)) as executor: + try: + futures = {executor.submit(coreFun, l,*args): l for l in elements} + + kwargs = { + 'total': len(futures), + 'unit': 'files', + 'unit_scale': True, + 'leave': False + } + + for future in tqdm(concurrent.futures.as_completed(futures), **kwargs): + url = futures[future] + try: + data = future.result(timeout=None) + + + except Exception as exc: + logging.error('%r generated an exception: %s' % (url, exc)) + raise + + except Exception as e: + logging.error(e) + executor.shutdown() + raise + + +def parallelRun(coreFun,elements,*args,max_workers=os.cpu_count()): + with concurrent.futures.ProcessPoolExecutor(max_workers=max_workers) as executor: + try: + futures = {executor.submit(coreFun, l,*args): l for l in elements} + + kwargs = { + 'total': len(futures), + 'unit': 'files', + 'unit_scale': True, + 'leave': False + } + + for future in tqdm(concurrent.futures.as_completed(futures), **kwargs): + url = futures[future] + try: + data = future.result() + except Exception as exc: + logging.error('%r generated an exception: %s' % (url, exc)) + raise + except Exception as e: + logging.error(e) + executor.shutdown() + raise + + +def parallelRunMerge(coreFun,elements,*args,max_workers=os.cpu_count()): + dataL = [] + with concurrent.futures.ProcessPoolExecutor(max_workers=max_workers) as executor: + try: + futures = {executor.submit(coreFun, l,*args): l for l in elements} + kwargs = { + 'total': len(futures), + 'unit': 'files', + 'unit_scale': True, + 'leave': False + } + for future in tqdm(concurrent.futures.as_completed(futures), **kwargs): + url = futures[future] + try: + data = future.result() + dataL.append(data) + + except Exception as exc: + logging.error('%r generated an exception: %s' % (url, exc)) + raise + + return dataL + except Exception as e: + logging.error(e) + executor.shutdown() + raise + + +def parallelRunMergeNew(coreFun,elements,*args,max_workers=os.cpu_count()): + + res = [] + with concurrent.futures.ProcessPoolExecutor(max_workers=max_workers) as executor: + try: + futures = {executor.submit(coreFun, l,*args): l for l in elements} + + kwargs = { + 'total': len(futures), + 'unit': 'files', + 'unit_scale': True, + 'leave': False + } + + for future in tqdm(concurrent.futures.as_completed(futures), **kwargs): + url = futures[future] + try: + data = future.result() + res.append(data) + except Exception as exc: + logging.error('%r generated an exception: %s' % (url, exc)) + raise + + except Exception as e: + logging.error(e) + executor.shutdown() + raise + aDF = pd.concat(res) + return aDF + +def get_filepaths(directory,extension): + + file_paths = [] # List which will store all of the full filepaths.\n, + exclude = '.git' + # Walk the tree.\n, + for root, directories, files in os.walk(directory): + directories[:] = [d for d in directories if d not in exclude] + # java = [i for i in files if i.endswith(extension)] + java = [i for i in files if bool(re.search(extension, i))] + + for filename in java: + # Join the two strings in order to form the full filepath.\n, + filepath = os.path.join(root, filename) + file_paths.append(filepath) # Add it to the list.\n, + + return file_paths # Self-explanatory.\n, + +def get_class_weights(y): + counter = Counter(y) + majority = max(counter.values()) + return {cls: round(float(majority)/float(count), 2) for cls, count in counter.items()} + + +def stopDB(dbDir,portInner,dbName): + cmd = "bash " + dbDir + "/" + "stopServer.sh " + " " + portInner; + + o, e = shellGitCheckout(cmd) + logging.info(o) + + + +def startDB(dbDir,portInner,projectType): + dbName = "dumps-"+projectType+".rdb" + # portInner = '6380' + cmd = "bash " + dbDir + "/" + "startServer.sh " + dbDir + " "+dbName+ " " + portInner; + + o, e = shellGitCheckout(cmd) + ping = "redis-cli -p "+portInner+" ping" + o, e = shellGitCheckout(ping) + m = re.search('PONG', o) + + while not m: + time.sleep(10) + logging.info('Waiting for checkout') + o, e = shellGitCheckout(ping) + m = re.search('PONG', o) + print(o) + + +def unique_everseen(iterable, key=None): + "List unique elements, preserving order. Remember all elements ever seen." + # unique_everseen('AAAABBBCCDAABBB') --> A B C D + # unique_everseen('ABBCcAD', str.lower) --> A B C D + seen = set() + seen_add = seen.add + if key is None: + for element in itertools.filterfalse(seen.__contains__, iterable): + seen_add(element) + yield element + else: + for element in iterable: + k = key(element) + if k not in seen: + seen_add(k) + yield element + +def plotBox(yList,labels, fn, rotate=False,limit=True): + import matplotlib + matplotlib.use("TkAgg") + import matplotlib.pyplot as plt + + + + fig = plt.figure() + ax1 = fig.add_subplot(111) + meanpointsprops = dict(markeredgecolor ='blue',markerfacecolor= + 'blue') + + flierprops = dict(markeredgecolor ='black',markerfacecolor= + 'black',marker='.',markersize=2) + box = ax1.boxplot(yList, 0, flierprops=flierprops,widths=0.5, showmeans=False, vert=True,meanprops=meanpointsprops) + for line in box['medians']: + x,y = line.get_xydata()[1] + line.set(linewidth=3) + line.set_color('blue') + # plt.scatter(labels, yList, color='r') + # plt.plot(labels, yList, '-o') + # ax1.boxplot(yList,notch=False, sym='', vert=True, whis=1.5, + # positions=None, widths=None, patch_artist=True, + # bootstrap=None, usermedians=None, conf_intervals=None) + if rotate: + ax1.set_xticklabels(labels, rotation=45, ha='right') + else: + # ax1.set_xticklabels(labels) + # ax1.set_xticklabels(None) + ax1.get_xaxis().set_ticklabels([]) + # sns.boxplot(yList, ax=ax1) + if limit: + ax1.set_ylim(top=1.1,bottom=0) + ax1.yaxis.set_ticks([0.0,1.0]) + else: + ax1.set_yscale('log') + ax1.set_xlabel('Cluster Member Size') + ax1.set_ylabel('Folds') + plt.ion() + + plt.subplots_adjust(wspace=0, hspace=0) + fig = plt.gcf() + + # fig.tight_layout() + fig.set_size_inches(7, 1, forward=True) + fig.savefig(fn, dpi=100, bbox_inches='tight') + + + plt.show() + +def plotBox2(ys,labels, fn,means, rotate=False,limit=True): + + + import matplotlib + matplotlib.use("TkAgg") + import matplotlib.pyplot as plt + + + fig,axes = plt.subplots(nrows=3,ncols=1) + + for ax1,yList,l,l2,mean in zip(axes.flat,ys,labels,['Shapes','Actions','Tokens'],means): + # plt.setp(ax1.get_xticks(),visible=False) + # ax1 = fig.add_subplot(111) + meanpointsprops = dict(markeredgecolor ='blue',markerfacecolor= + 'blue') + + flierprops = dict(markeredgecolor ='black',markerfacecolor= + 'black',marker='.',markersize=2) + box = ax1.boxplot(yList, 0, flierprops=flierprops,widths=0.5, showmeans=False, vert=True,meanprops=meanpointsprops) + + ax1.axhline(linewidth=2, color='r',y=mean) + + for line in box['medians']: + x,y = line.get_xydata()[1] + line.set(linewidth=3) + line.set_color('blue') + # plt.scatter(labels, yList, color='r') + # plt.plot(labels, yList, '-o') + # ax1.boxplot(yList,notch=False, sym='', vert=True, whis=1.5, + # positions=None, widths=None, patch_artist=True, + # bootstrap=None, usermedians=None, conf_intervals=None) + if rotate: + ax1.set_xticklabels(l, rotation=45, ha='right') + else: + # ax1.set_xticklabels(labels) + # ax1.set_xticklabels(None) + ax1.get_xaxis().set_ticklabels([]) + # ax1.get_xaxis().set_ticks([]) + # sns.boxplot(yList, ax=ax1) + if limit: + if l2 !='Tokens': + ax1.set_ylim(top=1,bottom=0) + else: + ax1.set_ylim(top=1.1, bottom=0) + ax1.yaxis.set_ticks([0.0,mean,0.5,1.0]) + ax1.yaxis.set_ticklabels([0,'',0.5,1]) + ax1.tick_params(direction='out', length=6, width=2, axis='y', + grid_color='r', grid_alpha=0.5) + + else: + # ax1.set_yscale('log') + ax1.set_xlabel('Cluster Member Size') + ax1.set_ylabel('Folds') + ax1.set_aspect('auto') + + ax1.set_ylabel(l2) + labels = ['C-'+str(i+1) for i in labels[0]] + ax1.set_xticklabels(labels) + ax1.set_xticklabels(labels, rotation=45, ha='right') + # plt.setp(ax1.get_xticks(), visible=True) + + ax1.set_xlabel('Clusters') + # ax1.set_xlabel('Similarity') + plt.ion() + + plt.subplots_adjust(wspace=0, hspace=0.05) + fig = plt.gcf() + + + # fig.tight_layout() + fig.set_size_inches(7, 7, forward=True) + fig.savefig(fn, dpi=100, bbox_inches='tight') + + + plt.show() + + +def plotScatter(s1,s2,vs,label,limits,type): + import matplotlib + matplotlib.use("TkAgg") + import matplotlib.pyplot as plt + plt.figure(figsize=(2.5, 2.5)) + + # s1 = (df1[whichColumn]).apply(lambda x: round(Decimal(x), 3)) + # s2 = (df2[whichColumn]).apply(lambda x: round(Decimal(x), 3)) + plt.scatter(s1, s2, color='r') + # plt.text(0.5, 0.25, '\\textbf{%s wins}' % + # vs, ha='center', va='center', rotation=45) + # plt.text(0.2, 0.5, '\\textbf{%s wins}' % + # label, ha='center', va='center', rotation=45) + # plt.title('%s vs. %s ' % (label, vs)) + ax = plt.gca() + ax.grid(False) + # ax.patch.set_alpha(0) + ax.set_xlim([0, limits]) + ax.set_ylim([0, limits]) + start, end = ax.get_xlim() + stepsize = 1 + ax.xaxis.set_ticks(np.arange(0, end, stepsize)) + ax.yaxis.set_ticks(np.arange(0, end, stepsize)) + x = np.linspace(start, end, limits+1) + y = np.linspace(start, end, limits+1) + ax.fill_between(x, y, end, facecolor='b', alpha=0.3) + # plt.plot(np.linspace(0, 1, 10), np.linspace(0, 1, 10), lw=1) + ax.spines['top'].set_visible(True) + ax.spines['right'].set_visible(True) + ax.spines['bottom'].set_visible(True) + ax.spines['left'].set_visible(True) + + ax.set_xlabel(vs) + ax.set_ylabel(label) + + plt.subplots_adjust(wspace=0, hspace=0) + # fig = plt.gcf() + # fig.set_size_inches(4, 4, forward=True) + + plt.savefig( + os.path.join( + 'scatter', + '{}.pdf'.format( + type).replace(' ', '-') + ), + tight_bbox=True + ) + +import threading +class BackgroundTask(object): + """ Threading example class + The run() method will be started and it will run in the background + until the application exits. + """ + + def __init__(self, model,PATH, interval=1): + """ Constructor + :type interval: int + :param interval: Check interval, in seconds + """ + self.interval = interval + self.model = model + self.path = PATH + + thread = threading.Thread(target=self.run, args=()) + thread.daemon = True # Daemonize thread + thread.start() # Start the execution + + def run(self): + """ Method that runs forever """ + self.model.save_model(self.path, + num_iteration=self.model.best_iteration) \ No newline at end of file diff --git a/python/common/preprocessing.py b/python/common/preprocessing.py new file mode 100644 index 0000000..e4b2c74 --- /dev/null +++ b/python/common/preprocessing.py @@ -0,0 +1,300 @@ +from nltk.tokenize import RegexpTokenizer +# from stop_words import get_stop_words +from nltk.stem.porter import PorterStemmer +from string import punctuation +import re +from nltk.corpus import stopwords +en_stop = stopwords.words('english') +from nltk.corpus import wordnet +import html + +from common.commons import * +CODE_PATH = os.environ["CODE_PATH"] + +# import spacy +# nlp = spacy.load('en_core_web_lg', disable=['parser', 'tagger', 'ner']) +# nlp.max_length =100000000 +from sklearn.feature_extraction.text import TfidfVectorizer +from sklearn.metrics.pairwise import cosine_similarity + +import sys + + +def getTokensForPatterns(res): + if isinstance(res, list): + merged = str() + for r in res: + if isinstance(r, list): + merged = merged + ' ' + ' '.join(r) + else: + merged = merged +' ' + r + else: + merged=res + + res = html.unescape(merged) + + tokens = getTokens(res,False) + + stripped = [] + for t in tokens: + splits = re.split('\.|\(|\)|:|>|<|:|=|/|\\\\|\'|-|,|\]|\[|}|{|;',t) + for s in splits: + stripped.append(s) + non_empty = [i for i in stripped if i != ''] + return non_empty + +def preprocessingCodeElementsList(res): + printDetail = False + if isinstance(res, list): + merged = str() + for r in res: + if isinstance(r, list): + merged = merged + ' ' + ' '.join(r) + else: + merged = merged +' ' + r + else: + merged=res + + res = html.unescape(merged) + + tokens = getTokens(res,printDetail) + + stripped = [] + for t in tokens: + splits = re.split('\.|\(|\)|:|>|<|:|=|/|\\\\|\'|-|,|\]|\[',t) + for s in splits: + stripped.append(s) + punc = removeEndingPunct(stripped,printDetail) + + non_empty = [i for i in punc if i != ''] + + stripped = removeEndingPunct(non_empty,printDetail) + + camelCase = handleCamelCase(stripped,printDetail,True) + + underScore = handleUnderScore(camelCase,printDetail,True) + + lower = [i.lower() for i in underScore] + + # stopped_tokens = [i for i in lower if not i in en_stop] + + stem2 = stem(lower,printDetail) + if printDetail: + print('=====CLEANED=========') + print(stem2) + + return stem2 + +def preprocessingForSimi(res): + printDetail = False + if isinstance(res, list): + merged = str() + for r in res: + if isinstance(r, list): + merged = merged + ' ' + ' '.join(r) + else: + merged = merged +' ' + r + else: + merged=res + + res = html.unescape(merged) + + tokens = getTokens(res,printDetail) + + stripped = [] + for t in tokens: + splits = re.split('\.|\(|\)|:|>|<|:|=|/|\\\\|\'|-|,|\]|\[',t) + for s in splits: + stripped.append(s) + punc = removeEndingPunct(stripped,printDetail) + + non_empty = [i for i in punc if i != ''] + + stripped = removeEndingPunct(non_empty,printDetail) + + camelCase = handleCamelCase(stripped,printDetail,False) + + underScore = handleUnderScore(camelCase,printDetail,False) + + # lower = [i.lower() for i in underScore] + + # stopped_tokens = [i for i in lower if not i in en_stop] + + # stem2 = stem(lower,printDetail) + # if printDetail: + # print('=====CLEANED=========') + # print(stem2) + + return underScore + +def preprocessingNL(res): + try: + printDetail = False + + if isinstance(res, list): + merged = str() + for r in res: + if isinstance(r, list): + merged = merged + ' ' + ' '.join(r) + else: + merged = merged +' ' + r + else: + merged=res + + res = html.unescape(merged) + html_decoded_string = res.replace("&", "&").replace(""", '"').replace("'", "'").replace(">", + ">").replace( + "<", "<") + html_decoded_string = re.sub(r'http[s]?://(?:[a-zA-Z]|[0-9]|[$-_@.&+]|[!*\(\),]|(?:%[0-9a-fA-F][0-9a-fA-F]))+', '',html_decoded_string) + + tokens = getTokens(html_decoded_string,printDetail) + + stripped = [] + for t in tokens: + splits = re.split('\.|\(|\)|:|>|<|:|=|/|\\\\|\'|-|,|\]|\[',t) + # splits = re.split('\.|\(|\)|:|>|<|:|=|/|\\\\|\'|-',t) + for s in splits: + stripped.append(s) + punc = removeEndingPunct(stripped,printDetail) + + non_empty = [i for i in punc if i != ''] + + stripped = removeEndingPunct(non_empty,printDetail) + + camelCase = handleCamelCase(stripped,printDetail,True) + + underScore = handleUnderScore(camelCase,printDetail,True) + + lower = [i.lower() for i in underScore] + + stopped_tokens = [i for i in lower if not i in en_stop] + + nonDigit = [i for i in stopped_tokens if (not i.isdigit())] + + # doc = nlp(' '.join(nonDigit)) + # newWord = [] + # for token in doc: + # if(token.text in nlp.vocab): + # newWord.append(token.text) + + stem2 = stem(nonDigit,printDetail) + + if printDetail: + print('=====CLEANED=========') + print(stem2) + + return stem2 + except Exception as e: + logging.error(e) + +def getTokens(re,printDetail=False): + tokenizer = RegexpTokenizer(r'\S+') + tokens = tokenizer.tokenize(re) + if printDetail: + print('=====TOKENS=========') + print(tokens) + + return tokens + +def charLength(x, l=3): + if x.isalpha() and len(x) >= l: + return True + else: + return False + + +def removeEndingPunct(re,printDetail): + stripped = [i.strip(punctuation) for i in re] + if printDetail: + print('=====removeEndingPunct=========') + print(stripped) + return stripped + +def handleCamelCase(re,printDetail=False,keepOriginal = False): + camelCased = list() + + for i in re: + listOfCC = camel_case_split(i) + camelCased.extend(listOfCC) + if i not in listOfCC and keepOriginal: + camelCased.append(i) + + if printDetail: + print('=====CAMEL CASE=========') + print(camelCased) + return camelCased + +def handleUnderScore(re,printDetail=False,keepOriginal = False): + underScored = list() + for i in re: + listOfCC = i.split('_') + underScored.extend(listOfCC) + if i not in listOfCC and keepOriginal: + underScored.append(i) + + if printDetail: + print('=====UNDER SCORE=========') + print(underScored) + + return underScored + +def camel_case_split(identifier): + matches = re.finditer('.+?(?:(?<=[a-z])(?=[A-Z])|(?<=[A-Z])(?=[A-Z][a-z])|$)', identifier) + res = [m.group(0) for m in matches] + + return res + +def stem(res,printDetail): + p_stemmer = PorterStemmer() + stemmed_tokens = [p_stemmer.stem(i.strip()) for i in res if i] + if printDetail: + print('=====STEMMED=========') + print(stemmed_tokens) + return stemmed_tokens + +def isEnglish(word_to_test): + if not wordnet.synsets(word_to_test): + #Not an English Word + #TODO + word_to_test + #print word_to_test + else: + return word_to_test + + +def dummy_fun(doc): + return doc + +def calculateTfIdfCodeElementsList(aCorpus): + global progress + progress = 0 + v = TfidfVectorizer(tokenizer=dummy_fun,stop_words=None,lowercase=False,sublinear_tf=True)#,max_df=0.7,min_df=3) + m = v.fit(aCorpus) + return v + +def calculateTfIdfNLList(aCorpus): + global progress + progress = 0 + v = TfidfVectorizer(tokenizer=dummy_fun,stop_words=None,lowercase=False,sublinear_tf=True)#,max_df=0.7,min_df=3) + m = v.fit(aCorpus) + return v + +def getDTMNL(x,v,corpus): + ind =x.name + v.tokenizer = dummy_fun + return v.transform([corpus[ind]]) +def getDTMCE(x,v,corpus): + ind =x.name + v.tokenizer = dummy_fun + return v.transform([corpus[ind]]) + +def getBRDTM(x,v,corpus): + ind =x.name + v.tokenizer = dummy_fun + return v.transform([corpus[ind]]) + + +def getBRDTMCEs(x,v,corpus): + ind =x.name + v.tokenizer = dummy_fun + return v.transform([corpus[ind]]) diff --git a/python/config.yml b/python/config.yml new file mode 100644 index 0000000..537953d --- /dev/null +++ b/python/config.yml @@ -0,0 +1,17 @@ +java: + 8home: /Library/Java/JavaVirtualMachines/jdk1.8.0_181.jdk/Contents/Home +spinfer: + home: /Users/anil.koyuncu/projects/fixminer/spinfer/spinfer.native + #home: /Users/anil.koyuncu/projects/spinfer/spinfer.native +dataset: +# home: /Users/anil.koyuncu/projects/test/fixminer-core/python/data/gumInputLinux/ + home: /data/fixminer-core/python/data/gumInputLinux/ + +coccinelle: + home: /Users/anil.koyuncu/projects/fixminer/spinfer/statics + #home: /Users/anil.koyuncu/projects/spinfer/statics + + +fixminer: +# datapath: /Users/anil.koyuncu/projects/test/fixminer-core/python/data/ + datapath: /data/fixminer-core/python/data/ diff --git a/python/data/ALLbugReportsComplete.pickle b/python/data/ALLbugReportsComplete.pickle new file mode 100644 index 0000000..542f9c6 Binary files /dev/null and b/python/data/ALLbugReportsComplete.pickle differ diff --git a/python/data/Cluster2Pattern.jar b/python/data/Cluster2Pattern.jar new file mode 100644 index 0000000..aad4820 Binary files /dev/null and b/python/data/Cluster2Pattern.jar differ diff --git a/python/data/CompareTrees.jar b/python/data/CompareTrees.jar new file mode 100644 index 0000000..842d122 Binary files /dev/null and b/python/data/CompareTrees.jar differ diff --git a/python/data/FixPatternMiner-1.0.0.jar b/python/data/FixPatternMiner-1.0.0.jar new file mode 100644 index 0000000..007f2fd Binary files /dev/null and b/python/data/FixPatternMiner-1.0.0.jar differ diff --git a/python/data/FixPatternMiner-1.0.1.jar b/python/data/FixPatternMiner-1.0.1.jar new file mode 100644 index 0000000..6397e52 Binary files /dev/null and b/python/data/FixPatternMiner-1.0.1.jar differ diff --git a/python/data/RichEditScript.jar b/python/data/RichEditScript.jar new file mode 100644 index 0000000..3002841 Binary files /dev/null and b/python/data/RichEditScript.jar differ diff --git a/python/data/allCocciPatterns.pickle b/python/data/allCocciPatterns.pickle new file mode 100644 index 0000000..2b6ab23 Binary files /dev/null and b/python/data/allCocciPatterns.pickle differ diff --git a/python/data/app.properties b/python/data/app.properties new file mode 100644 index 0000000..85e2607 --- /dev/null +++ b/python/data/app.properties @@ -0,0 +1,16 @@ +pjName = gumInput +portInner = 6380 +portDumps = 6399 +parallelism = AKKA +numOfWorkers = 20 +hostname = localhost +hunkLimit = 1 + +#inputPath = /Users/anilkoyuncu/projects/gumInputLinux +inputPath = /data/fixminer-core/python/data/gumInputLinux +redisPath = /data/fixminer-core/python/data/redis +#srcMLPath= /Users/anil.koyuncu/Downloads/srcML/src2srcml +#srcMLPath= /Users/anil.koyuncu/Downloads/srcML.0.9.5/bin/srcml +srcMLPath= /usr/local/bin/srcml +actionType = ALL +eDiffTimeout = 900 diff --git a/python/data/bugReports.7z.001 b/python/data/bugReports.7z.001 new file mode 100644 index 0000000..5e6b2d9 Binary files /dev/null and b/python/data/bugReports.7z.001 differ diff --git a/python/data/bugReports.7z.002 b/python/data/bugReports.7z.002 new file mode 100644 index 0000000..02159fd Binary files /dev/null and b/python/data/bugReports.7z.002 differ diff --git a/python/data/bugReports.7z.003 b/python/data/bugReports.7z.003 new file mode 100644 index 0000000..a8ce4b3 Binary files /dev/null and b/python/data/bugReports.7z.003 differ diff --git a/python/data/buildBugzoo.sh b/python/data/buildBugzoo.sh new file mode 100644 index 0000000..c50a3f8 --- /dev/null +++ b/python/data/buildBugzoo.sh @@ -0,0 +1,5 @@ +#!/bin/bash +source activate fixminerEnv + +bugzoo bug build $1 + diff --git a/python/data/classification.json b/python/data/classification.json new file mode 100644 index 0000000..003da36 --- /dev/null +++ b/python/data/classification.json @@ -0,0 +1,371 @@ +{ + "Repair Actions": { + "Assignment": { + "assignAdd": { + "name": "Addition", + "fullname": "Assignment addition" + }, + "assignRem": { + "name": "Removal", + "fullname": "Assignment removal" + }, + "assignExpChange": { + "name": "Expression modification", + "fullname": "Assignment expression modification" + } + }, + "Conditional": { + "condBranIfAdd": { + "name": "if branch addition", + "fullname": "Conditional (if) branch addition" + }, + "condBranIfElseAdd": { + "name": "if-else branches addition", + "fullname": "Conditional (if-else) branches addition" + }, + "condBranElseAdd": { + "name": "else branch addition", + "fullname": "Conditional (else) branch addition" + }, + "condBranCaseAdd": { + "name": "case branch addition", + "fullname": "Conditional (case in switch) branch addition" + }, + "condBranRem": { + "name": "Removal", + "fullname": "Conditional (if or else) branch removal" + }, + "condExpExpand": { + "name": "Expression expansion", + "fullname": "Conditional expression expansion" + }, + "condExpRed": { + "name": "Expression reduction", + "fullname": "Conditional expression reduction" + }, + "condExpMod": { + "name": "Expression modification", + "fullname": "Conditional expression modification" + } + }, + "Loop": { + "loopAdd": { + "name": "Addition", + "fullname": "Loop addition" + }, + "loopRem": { + "name": "Removal", + "fullname": "Loop removal" + }, + "loopCondChange": { + "name": "Conditional expression modification", + "fullname": "Loop conditional expression modification" + }, + "loopInitChange": { + "name": "Initialization field modification", + "fullname": "Loop initialization field modification" + } + }, + "Method Call": { + "mcAdd": { + "name": "Addition", + "fullname": "Method call addition" + }, + "mcRem": { + "name": "Removal", + "fullname": "Method call removal" + }, + "mcRepl": { + "name": "Replacement", + "fullname": "Method call replacement" + }, + "mcMove": { + "name": "Moving", + "fullname": "Method call moving" + }, + "mcParAdd": { + "name": "Parameter addition", + "fullname": "Method call parameter addition" + }, + "mcParRem": { + "name": "Parameter removal", + "fullname": "Method call parameter removal" + }, + "mcParSwap": { + "name": "Parameter value swapping", + "fullname": "Method call parameter value swapping" + }, + "mcParValChange": { + "name": "Parameter value modification", + "fullname": "Method call parameter value modification" + } + }, + "Method Definition": { + "mdAdd": { + "name": "Addition", + "fullname": "Method definition addition" + }, + "mdRem": { + "name": "Removal", + "fullname": "Method definition removal" + }, + "mdRen": { + "name": "Renaming", + "fullname": "Method definition renaming" + }, + "mdParAdd": { + "name": "Parameter addition", + "fullname": "Parameter addition in method definition" + }, + "mdParRem": { + "name": "Parameter removal", + "fullname": "Parameter removal from method definition" + }, + "mdParTyChange": { + "name": "Parameter type modification", + "fullname": "Parameter type modification in method definition" + }, + "mdRetTyChange": { + "name": "Return type modification", + "fullname": "Method return type modification" + }, + "mdModChange": { + "name": "Modifier change", + "fullname": "Method modifier change" + }, + "mdOverride": { + "name": "Method overriding related change", + "fullname": "Method overriding addition or removal" + } + }, + "Object Instantiation": { + "objInstAdd": { + "name": "Addition", + "fullname": "Object instantiation addition" + }, + "objInstRem": { + "name": "Removal", + "fullname": "Object instantiation removal" + }, + "objInstMod": { + "name": "Modification", + "fullname": "Object instantiation modification" + } + }, + "Exception": { + "exTryCatchAdd": { + "name": "try-catch addition" + }, + "exTryCatchRem": { + "name": "try-catch removal" + }, + "exThrowsAdd": { + "name": "throw addition" + }, + "exThrowsRem": { + "name": "throw removal" + } + }, + "Return": { + "retBranchAdd": { + "name": "Addition", + "fullname": "Return statement addition" + }, + "retRem": { + "name": "Removal", + "fullname": "Return statement removal" + }, + "retExpChange": { + "name": "Expression modification", + "fullname": "Return expression modification" + } + }, + "Variable": { + "varAdd": { + "name": "Addition", + "fullname": "Variable addition" + }, + "varRem": { + "name": "Removal", + "fullname": "Variable removal" + }, + "varTyChange": { + "name": "Type change", + "fullname": "Variable type change" + }, + "varModChange": { + "name": "Modifier change", + "fullname": "Variable modifier change" + }, + "varReplVar": { + "name": "Replacement by Another Variable", + "fullname": "Variable replacement by another variable" + }, + "varReplMc": { + "name": "Replacement by Method Call", + "fullname": "Variable replacement by method call" + } + }, + "Type": { + "tyAdd": { + "name": "Type addition", + "fullname": "Type addition" + }, + "tyImpInterf": { + "name": "Type implemented interface modification", + "fullname": "Type implemented interface modification" + } + } + }, + "Repair Patterns": { + "Conditional Block": { + "condBlockOthersAdd": { + "name": "Conditional block addition", + "fullname": "Conditional block addition" + }, + "condBlockRetAdd": { + "name": "Addition with return statement", + "fullname": "Conditional block addition with return statement" + + }, + "condBlockExcAdd": { + "name": "Addition with exception throwing", + "fullname": "Conditional block addition with exception throwing" + }, + "condBlockRem": { + "name": "Conditional block removal", + "fullname": "Conditional block removal" + } + }, + "Expression Fix": { + "expLogicExpand": { + "name": "Logic expression expansion", + "fullname": "Logic expression expansion" + }, + "expLogicReduce": { + "name": "Logic expression reduction", + "fullname": "Logic expression reduction" + }, + "expLogicMod": { + "name": "Logic expression modification", + "fullname": "Logic expression modification" + }, + "expArithMod": { + "name": "Arithmetic expression modification", + "fullname": "Arithmetic expression modification" + } + }, + "Wraps-with/Unwraps-from": { + "wrapsIf": { + "name": "Wraps-with if statement", + "fullname": "Wraps-with if statement" + }, + "wrapsIfElse": { + "name": "Wraps-with if-else statement", + "fullname": "Wraps-with if-else statement" + }, + "wrapsElse": { + "name": "Wraps-with else statement", + "fullname": "Wraps-with else statement" + }, + "wrapsTryCatch": { + "name": "Wraps-with try-catch block", + "fullname": "Wraps-with try-catch block" + }, + "wrapsMethod": { + "name": "Wraps-with method call", + "fullname": "Wraps-with method call" + }, + "wrapsLoop": { + "name": "Wraps-with loop", + "fullname": "Wraps-with loop" + }, + "unwrapIfElse": { + "name": "Unwraps-from if-else statement" + }, + "unwrapMethod": { + "name": "Unwraps-from method call" + }, + "unwrapTryCatch": { + "name": "Unwraps-from try-catch block" + } + }, + "Wrong Reference": { + "wrongVarRef": { + "name": "Variable", + "fullname": "Wrong Variable Reference" + }, + "wrongMethodRef": { + "name": "Method", + "fullname": "Wrong Method Reference" + } + }, + "Missing Null-Check": { + "missNullCheckP": { + "name": "Missing null check", + "fullname": "Missing null check addition" + }, + "missNullCheckN": { + "name": "Missing non-null check", + "fullname": "Missing non-null check addition" + } + }, + "Other": { + "singleLine": { + "name": "Single Line" + }, + "copyPaste": { + "name": "Copy/Paste" + }, + "constChange": { + "name": "Constant Change" + }, + "codeMove": { + "name": "Code Moving" + }, + "notClassified": { + "name": "Not classified" + } + } + }, + "Runtime Information": { + "Automatic Repair": { + "rtAcs": { + "name": "ACS" + }, + "rtCardumen": { + "name": "Cardumen" + }, + "rtDeepRepair": { + "name": "DeepRepair" + }, + "rtDynaMoth": { + "name": "DynaMoth" + }, + "rtElixir": { + "name": "Elixir" + }, + "rtGPFL": { + "name": "GPFL" + }, + "rtHDRepair": { + "name": "HDRepair" + }, + "rtGenProg": { + "name": "jGenProg" + }, + "rtKali": { + "name": "jKali" + }, + "rtNopol": { + "name": "Nopol" + }, + "rtssFix": { + "name": "ssFix" + }, + "rtJAID": { + "name": "JAID" + } + } + } +} diff --git a/python/data/datasets.csv b/python/data/datasets.csv new file mode 100644 index 0000000..dc7dee4 --- /dev/null +++ b/python/data/datasets.csv @@ -0,0 +1,29 @@ +Name,GitRepo +libtiff, https://gitlab.com/libtiff/libtiff.git +FFmpeg, https://github.com/FFmpeg/FFmpeg.git +cmake, https://gitlab.kitware.com/cmake/cmake.git +redis, https://github.com/antirez/redis.git +ompi, https://github.com/open-mpi/ompi.git +gzip, https://git.savannah.gnu.org/git/gzip.git +libarchive, https://github.com/libarchive/libarchive +cairo, https://gitlab.freedesktop.org/cairo/cairo.git +vlc, https://github.com/videolan/vlc.git +freebsd, https://github.com/freebsd/freebsd +curl, https://github.com/curl/curl.git +tcl, https://github.com/tcltk/tcl.git +cpython, https://github.com/python/cpython.git +nginx, https://github.com/nginx/nginx.git +qemu, https://github.com/qemu/qemu.git +apr, https://github.com/apache/apr.git +tmux, https://github.com/tmux/tmux.git +php-src, https://github.com/php/php-src.git +gtk, https://gitlab.gnome.org/GNOME/gtk.git +gstreamer, https://gitlab.freedesktop.org/gstreamer/gstreamer.git +openssh-portable, https://github.com/openssh/openssh-portable.git +openssl, https://github.com/openssl/openssl.git +wireshark, https://github.com/wireshark/wireshark.git +git, https://github.com/git/git.git +linux, git://git.kernel.org/pub/scm/linux/kernel/git/stable/linux.git +gmp,https://github.com/ryepdx/gmp +lighttpd1.4,https://github.com/lighttpd/lighttpd1.4.git +lighttpd2,https://github.com/lighttpd/lighttpd2.git diff --git a/python/data/defects4j-bugs.csv b/python/data/defects4j-bugs.csv new file mode 100644 index 0000000..bdf0889 --- /dev/null +++ b/python/data/defects4j-bugs.csv @@ -0,0 +1,396 @@ 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flag variable.,,,,,,,,,,,, +Chart,23,7,1,0,1,1,1,19,0,0,19,1,0,0,x,,,,,,,,x,x,,,,,,,,,,,x,,,,,,,,,,,,,x,,,,,x,,,,,,,,,,x,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,"I don't know if it makes sense to describe everything made in a method definition... specially in cases like that, where many lines of code with specific logic are commited.",,,,,,,,,,,, +Chart,24,2,3,3,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,x,,x,,,,,x,,,,x,,,,,,,,,,,Replaces variable in an assignment expression.,,,,,,X,X,,,X,, +Chart,25,7,5,7,1,2,1,12,0,2,14,6,226,185,,,,,,,,,,x,x,,,,,,,,,,x,,,,,,,,,,,,,x,,,,,x,,x,,,,,,,,x,,x,,,,,,,,,,x,,,x,x,x,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,X,X,X,X,X,,,,,X,X +Chart,26,1,2,6,1,1,1,2,0,0,2,2,5,5,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,X,X,,X,X,,,,X,,X +Closure,1,2,1,2,1,1,1,3,0,0,3,1,0,0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,x,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,X,,,,,,,,,X +Closure,2,3,2,1,1,1,1,4,0,0,4,3,3,1,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,x,,,,,,,,,,,,,x,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,X +Closure,3,10,2,2,1,2,2,6,0,2,8,3,218,119,,,,x,,,,,,x,,x,,x,,,,,,,x,,,,,,,,,,,,x,x,,,x,,x,,,,,,,,,,x,,,,,,,,,,,,x,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,X,,,,,,,,,X +Closure,4,2,3,0,1,1,1,0,0,2,2,2,11,9,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,x,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,, +Closure,5,3,1,3,1,1,1,3,0,0,3,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,x,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,X,,,,,,,X,,X +Closure,6,2,2,0,1,2,1,0,8,0,8,4,36,20,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,x,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,x,,,,,,,,,,,,, +Closure,7,5,2,2,1,1,1,4,0,1,5,3,2,0,,,,,,,,,,x,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,x,x,,,,,,,,,,,x,,,,,,,x,,,,,,,,,,,x,,,,,,,,x,,,,,,,,,,,,,X,,,,,,X +Closure,8,4,1,2,1,2,1,4,0,0,4,2,4,3,x,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,x,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,x,,,,,,,,Adds a new condition in expression and a new method invocated by this condition.,,,X,,,,,,,,,X +Closure,9,5,1,0,1,2,2,1,0,1,2,2,64,43,,,,,,,,,,x,x,,,,,x,,,,,,,,,,,,,,,,,,,,,,,x,,x,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,x,,,,x,,,,,,,,,,,,,,,,,,,,,, +Closure,10,2,2,4,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,x,x,,,,,,,,,x,,,,,,,,,,x,,,,X,,,X,,X,,,,X +Closure,11,3,1,0,1,1,1,0,2,0,2,1,0,0,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,x,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,, +Closure,12,6,1,3,1,1,1,6,0,0,6,1,0,0,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,x,,,,,x,,,x,,,,,,,x,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,x,,,,,,,,x,,,,,,,,,X,,,X,,,,,,X +Closure,13,1,2,2,1,1,1,1,1,0,2,2,1,1,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,x,,,,,,,,,,x,,,,,,,,,,Only one line of code was moved.,,,X,,,X,,,,,, +Closure,14,2,3,3,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,,,,,x,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,x,x,,,,,,,,x,,,,,,,,,,,Parameter value change.,,,,,,,X,X,,,,X +Closure,15,3,1,1,1,1,1,3,0,0,3,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,x,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,X +Closure,16,8,1,2,1,3,2,6,0,3,9,5,296,217,,,,x,,,,,,x,,x,,x,,x,,,,x,x,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,x,,,,,,,,,x,,,,,,X,,,,,,,,,X +Closure,17,5,2,2,1,1,1,4,0,1,5,2,1,0,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,x,,,,,x,,,,,,,,,,x,,,,,,,,,,,,x,,,,,x,,,,,,,,,,,,,,,,,,,,,x,,,,,,,Transform If structure in Wrap-with IfElse.,,,X,,,,,,,,,X +Closure,18,1,2,3,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,x,,,,,,,,,x,,,,,,,,,,x,,,,X,,,,,,,X,,X +Closure,19,1,1,1,1,1,1,2,0,0,2,2,1,0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,X,,,,,,,,, +Closure,20,2,3,2,1,1,1,1,0,1,2,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,x,,,,,,,x,,,,,,,,,,x,,,,,,,,,,,,,X,,,,,,,,,X +Closure,21,8,3,3,1,1,1,0,17,2,19,2,11,7,,,,,,,,,,x,x,,,,,,,,,,,x,,,,,,,,,,x,,,,,,x,,x,,,x,,,,,,,x,,,,,,,,,,,,,x,,,,x,,x,,,,,,,,,,x,,,,,,,,,,,,,,,,,,X,,,X,,,,,,X +Closure,22,8,4,3,1,1,1,0,24,2,26,5,12,8,,,,,,,,,,x,x,,,,,,,,,,,x,,,,,,,,,,,,x,,,,x,,x,,,x,,,,,,,x,,,,,,,x,,,,,,x,,,x,,,x,,,,,,,,,,x,,,,,,,,,,,,,,x,"It seems that the old conditions were wrong, so a replacement was made. It simplifies too the implementation. It is similar to a Wrap-with-If operation plus a move of some conditionals.",,,X,,,X,,,,,,X +Closure,23,5,2,0,1,1,1,6,0,1,7,2,1,1,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,x,,,,,,,,,x,,,,,x,,,x,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,, +Closure,24,4,2,0,1,1,1,2,1,2,5,4,15,9,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,x,,,x,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,x,,,,,,,,,,,,,x,,,,,,,x,,,,,,,"Again, a kind of Wrap-with-IfElse where some conditionals were missing.",,,,,,,,,,,, +Closure,25,5,0,0,1,1,1,2,4,0,6,4,22,18,,,,,,,,,,x,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,x,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,x,,,,x,,,,,,,x,,,,,,,,,,,,,,,,,, +Closure,26,5,1,2,1,1,1,5,0,0,5,3,100,71,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,x,,,,,x,,,,,,,,,,x,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,x,,,,,,,x,,,,,,,,,,X,,,,,,,,,X +Closure,27,6,2,0,1,3,1,3,0,3,6,3,120,99,x,,,,,,,,,,,x,,,,x,,x,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,x,,,,,,,,,,,,,,,x,,,,,,,,,x,,,,,,x,,,,,,,,,x,,,,,,A Node object is instantiated in the call. Adds new method and replace calls.,,,,,,,,,,,, +Closure,28,3,0,2,1,1,1,4,0,0,4,1,0,0,x,,,,,,,,x,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,x,,,,,,,x,,,,,,,x,Overrides the addConstant method. Replaces method calls.,,,X,,,,,,,,,X +Closure,29,6,2,2,1,1,1,10,0,0,10,3,59,28,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,x,x,,,,x,,,,,,,,,,x,,,,,,,,,,,,x,x,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,x,,,,,X,,,,,,,,,X +Closure,30,9,5,2,2,3,3,8,0,2,10,6,358,237,,,,,,,,,,,x,x,,x,,,,,,,x,,,,,,,,,,x,,,x,x,,,,x,,,,,,,,,,x,,,x,,,,,,,,,x,,,,x,,,x,,,,,x,,,,,,,,,x,,,,,,,,,,x,x,Adds a new class attribute with its initialization.,,,X,,,,,,,,,X +Closure,31,1,2,4,1,1,1,0,1,0,1,1,0,0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,x,,,,,,,,,x,,,,,,,,,,,,,,X,,,,X,,,X,,X +Closure,32,8,2,0,1,1,1,15,3,0,18,6,56,38,,,,,,,,,,x,x,,,,,,,,,,x,,,,,,,,,,,,,x,x,,,x,x,,,x,,,,,,,,,,,,,,,,,,,,x,x,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,, +Closure,33,3,1,4,1,1,1,3,0,0,3,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,x,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,X,,,X,,,,X,,X +Closure,34,5,3,0,2,3,2,0,2,3,5,3,629,505,,,,,,,,,,x,,x,,x,,,,,,,,,,,x,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,x,x,,,,,,,,x,,,,,,x,,,,,,,,,,,,,,,,,,, +Closure,35,7,2,1,1,1,1,0,13,2,15,1,0,0,,,,,,,,,,x,x,,,,,,,,,,,x,,,,,,,,,x,,,,,,,x,,x,,,x,,,,,,,,,,,,,,,,,,,,x,,,,,x,,,,,,,,,,,,,x,,,,,,,,,,,,x,Simplifies an existent null check. It's a kind of conditional block replacement.,,,,,,,,,,,,X +Closure,36,3,2,2,1,1,1,3,0,0,3,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,x,,,,,,,,,,,,x,,,,,x,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,X,,,,,,,,,X +Closure,37,5,2,0,2,2,2,4,0,1,5,3,3,0,,,,,,,,,,x,,x,,x,,,,,,,,,,,,,,,,,,,,x,,,,,x,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,,x,,,,,,x,Replaces method call by overloaded method with extra parameters.,,,,,,,,,,,, +Closure,38,1,2,1,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,x,,,,,,,,,x,,,,,,,,,,,"Parentesis added has no effect on expression evaluation, so a conditional expression expansion was considered only.",,,,,,,,,,,,X +Closure,39,5,3,0,1,1,1,0,0,3,3,3,12,9,,,,,,,,,,,,x,,x,,,,,,,,,,,,,,,,,,x,,,x,,,,,,,,,,,,,x,,,,x,,,,,,,,,,,,,,,x,,,,,,x,,,,,,,,,,,,x,,,,,,,,,"If-else implicit in ""exp?a:b"" construct",,,,,,,,,,,, +Closure,40,2,2,5,1,1,1,0,2,1,3,2,2,2,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,x,,,,,,,,,,x,,,,,,,,,"Removed a null check, maintaining the branch code.",,,X,,,X,X,,,X,,X +Closure,41,4,2,0,1,2,1,9,0,0,9,2,191,138,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,x,,,x,,,,,,,,,,,,,,,,,,,,x,,,,x,,,,,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,,, +Closure,42,3,1,0,1,1,1,7,0,0,7,2,2,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,x,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,x,,,,,,,,,x,,,,,,,,,,,,,,,,, +Closure,43,6,4,0,1,2,1,17,0,0,17,4,161,108,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,x,x,,,,x,,,x,,,,,,,,,,x,,,,,,,,,,x,,,x,x,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,, +Closure,44,2,1,0,1,1,1,2,0,0,2,2,5,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,, +Closure,45,8,3,3,1,2,2,4,0,2,6,4,171,107,,,,,,,,,,x,x,,,,,,,,,,x,,,,,,,,,,,x,x,x,,,,,x,,x,,,,,,,,,,,,,,,,,,,,,x,,,,,x,,,,,,x,,,,,,,,,x,,,,,,x,,,,,,,,,X,,,X,,,,,,X +Closure,46,9,1,2,1,1,1,0,16,0,16,1,0,0,,x,,,,,,,x,,x,,,,,,,,x,,,x,,,,,,,,,,,,,,,,x,,x,,,x,,,,,,,x,,,,,,,,,,,,,x,,,,,,,,,,,,,,x,,x,,,,,,,,,,,,,,x,Removes Overriding method. Adds and initializes local variable.,,,X,,,X,,,,,, +Closure,47,5,1,0,2,2,2,5,0,3,8,3,3,2,,,,,,,,,,,,,,,,x,,,,x,x,,,,,,,,,,,,,x,,,,,x,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,x,,,,,,,,x,,,,,,,,,,,,,,,, +Closure,48,6,2,1,1,1,1,3,0,4,7,2,1,0,,,,,,,,,,x,x,,,,,,,,,,,,,,,,,,,,,x,,,x,,,,x,x,,,,,,,,,,,,,,,,,,,,,,x,,,,,x,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,X,,,,,,,,, +Closure,49,10,2,2,1,3,1,14,8,0,22,8,81,53,,,,,,,,,,x,x,,,,,,,,,,x,x,,,,,,,,,,,,,,,x,x,x,x,,x,x,,,,,,,,,,,,,,,,,,,x,x,,,,,,,,,,,,,,x,,,x,,,,,,,,,,,,,,,,,X,,,,,,,,,X +Closure,50,3,3,2,1,1,1,5,0,1,6,3,13,9,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,x,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,x,x,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,X,,,,,,,,,X +Closure,51,2,2,1,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,x,,,,,,,,,x,,,,,,,,,,,,,,,,,,,X,,,, +Closure,52,2,2,0,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,x,,,,,,,x,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,, +Closure,53,4,1,0,1,1,1,4,0,0,4,2,19,13,,,,,,,,,,x,,,,,,,,x,,,,,,,,,,,,,,,,,x,,,,x,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,, +Closure,54,9,5,0,2,3,2,10,1,2,13,5,31,18,,,,,,,,,,x,x,,,,,,,,,,x,,,,x,,,,,,x,,,x,x,,,,x,,x,,,,,,,,,,,x,,,,,,,,,,x,,,,x,,x,,,,x,,,,,,,,x,,,,,,,,,,,,,,One of the chunks have a kind of Wrap-with-IfElse done with the replacement of existent conditional block.,,,,,,,,,,,, +Closure,55,2,2,3,1,1,1,1,0,1,2,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,x,,,,,,,x,,,,,,,,,,x,,,,,,,,,x,,,,X,,,X,,,,,,X +Closure,56,3,1,0,1,1,1,4,0,0,4,2,1,1,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,x,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,, +Closure,57,2,2,0,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,x,,,,,,,,,x,,,,,,,,,,,"Altought there is a null check in the conditional expression, the expression is expanded with an extra condition not related to null-check.",,,,,,,,,,,, +Closure,58,2,1,0,1,1,1,4,0,0,4,2,2,2,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,, +Closure,59,2,2,1,1,1,1,1,0,1,2,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,x,,,,,,,,,,x,,,,,,,,,,,,,X,,,,,,,,, +Closure,60,4,2,2,1,2,1,5,0,0,5,3,29,17,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,x,,,,,,,,,,,,x,,x,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,X,,,,,,,,,X +Closure,61,5,2,2,1,1,1,6,0,0,6,1,0,0,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,x,,,,,x,,,,,,,,,,x,,,,,,,,,,,,x,x,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,X,,,,,,,,,X +Closure,62,1,2,4,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,x,,,,,,,,,x,,,,,,,,,,,"Just changed the operator in ""if"" condition",,,X,,,,,X,,X,,X +Closure,63,1,2,3,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,x,,,,,,,,,x,,,,,,,,,,,Same as bug 62,,,X,,,,,,,X,,X +Closure,64,5,1,0,1,3,1,0,0,4,4,4,38,25,,,,x,,,,,,,,x,,x,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,x,,,,,,,,New parameters are added in three method calls (call to overloaded methods). A logic expression passed to a method call is changed.,,,,,,,,,,,, +Closure,65,1,2,0,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,x,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,, +Closure,66,2,1,2,1,1,1,2,0,0,2,2,1,0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,x,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,X,,,,,,,,,X +Closure,67,2,2,2,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,x,,,,,,,,,x,,,,,,,,,,,,,,X,,,,,,,,,X +Closure,68,1,3,0,1,3,1,3,1,0,4,4,892,554,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,x,,,,,,,x,,,,,,,,,x,,,,,,x,,,,,,,x,An assignment was moved outside a branch.,,,,,,,,,,,, +Closure,69,2,1,0,1,1,1,7,0,0,7,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,x,,,,,,,,,x,,,,x,,,,,,,,,,,,, +Closure,70,1,2,2,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,x,,,,,,,,x,,,,,,,,,,x,,,,,,,,X,,,X,, +Closure,71,3,3,0,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,x,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,x,,,x,,,,,x,,,,,,,,,x,,,,,,,,,,,The null-check is done in a boolean expression assigned to a variable and not to a conditional test.,,,,,,,,,,,, +Closure,72,3,1,2,2,2,2,2,0,1,3,2,0,0,,,,,,,,,,x,,,,,,,,x,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,x,,,,,x,,,,,,,,,Instantiates an anonymous object and make a method call on it.,,,X,,,,,,,,,X +Closure,73,1,2,3,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,x,,,,,,,,,x,,,,,,,,,,,,,,,,,,X,X,,X,, +Closure,74,9,3,0,1,2,1,13,0,2,15,2,165,136,x,,,,,,,,,x,,x,,,,,,,,,x,,,,,,,,,,,,,x,,,x,,x,,x,,,,,,,,x,,,,,,,,,,,,x,,,x,,,,,,,,,x,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,, +Closure,75,5,3,2,1,2,1,3,0,1,4,3,62,46,,,,,,,,,,x,,,,,,,,,,,,,,,x,,,,,,,,,x,,,,,,,,,,,,,,x,x,,,,,,,,,,,,x,,,,,,,,,,,x,,,x,,,,,,,,,,,x,,,,,,,,,,,X,,,,,,,,,X +Closure,76,9,4,2,1,2,1,37,6,0,43,11,73,48,,,,,,,,,,x,x,,,,,,,,,,x,,,,,,,,,,,,x,x,x,,,x,x,,,,,,,,,,x,,,,,,,,x,,,,x,x,,,,x,,,,,,,,,,,,,,x,,,,,,,,,,,,,x,,,,X,,,,,,,,,X +Closure,77,2,2,0,1,1,1,1,0,0,1,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,x,,,,,,,,,x,,,,,,,,,,x,,,,,,,,,,,,, +Closure,78,1,1,2,1,1,1,0,2,0,2,2,6,6,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,Removes error invocation call.,,,X,,,,,,,,,X +Closure,79,3,1,0,2,2,2,1,0,1,2,2,0,0,,,,,,,,,,x,,x,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,x,,,,x,,,,,,,,,,Calls overloaded method with extra parameters.,,,,,,,,,,,, +Closure,80,1,1,0,1,2,1,2,0,0,2,2,1648,989,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,x,,,,,,,,,,"These blocks are inserted as extra switch clauses. Should be a ""Missing Condition"", ""Missing Block"" or both?",,,,,,,,,,,, +Closure,81,4,1,0,1,1,1,7,0,0,7,1,0,0,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,x,,,,,x,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,, +Closure,82,2,2,0,1,1,1,2,0,1,3,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,x,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,, +Closure,83,2,1,0,1,1,1,3,0,1,4,1,0,0,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,x,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,"The existent code was splitted in declaration of var ""param"" out of the wrap and assignment, with Wrap-with-TryCatch.",,,,,,,,,,,, +Closure,84,7,2,0,1,3,1,27,0,0,27,3,465,377,x,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,x,,,x,,x,,,,,,,,,,x,,,,,,,,,,,,x,x,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,x,,,,,,,,,,,,, +Closure,85,9,4,0,1,2,1,7,13,1,21,4,29,22,,,,,,,,,,x,x,,,,,,,,,,,x,,,,,,,,,,,,,x,,,x,x,x,,x,,,,,,,,x,,,,,,,,x,,,,x,x,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, +Closure,86,1,3,1,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,x,,,,,x,x,,,,,,,,x,,,,,,,,,,x,,,,,,,,X,,,,, +Closure,87,8,1,0,1,1,1,12,0,1,13,4,10,0,,,,,,,,,,x,x,,,,,,,,,,x,,,,,,,,,,,,,x,x,,,,x,,,,,,,,,x,x,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,, +Closure,88,5,1,0,1,1,1,6,0,0,6,2,3,0,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,x,,,,,x,,,,,,,,,,x,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,, +Closure,89,3,3,0,2,2,2,3,0,1,4,2,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,x,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,x,,x,,,,,,,,,,,,,,,,,,x,,,,,,,x,,,,,,,,,,,,, +Closure,90,4,2,0,2,2,2,3,0,1,4,2,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,x,x,,,,,x,,,,,,,,,,,,,,,,,,,,,,,x,,,,x,,,,,,,,,,,,,,x,,,,,,x,,,,,,,,,,,,,,,,,,,, +Closure,91,5,2,0,1,1,1,9,0,0,9,1,0,0,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,x,,,,,x,,,,,,,,,,x,,,,,,,,,,,,x,x,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,x,,x,,,,,,,,,,,,, +Closure,92,2,2,0,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,x,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,, +Closure,93,2,2,0,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,x,,,,,,,,,x,,,,,,,,,,,Same change/commit as #92.,,,,,,,,,,,, +Closure,94,3,2,0,1,1,1,19,0,0,19,3,8,6,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,x,,,,,,,,,,,,x,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,"Many ""case"" conditions were added, sharing the same consequent action. Equivalent to ""if ( x || y || z || ... ) then do this"". These blocks are inserted as extra switch clauses. Should be a ""Missing Condition"", ""Missing Block"" or both?",,,,,,,,,,,, +Closure,95,4,1,0,1,1,1,7,0,0,7,2,3,0,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,x,,,,,x,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,x,,,,,,,,,x,,,,,,,,,,,,,,,,, +Closure,96,3,3,0,1,1,1,3,0,1,4,3,3,1,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,x,,,,,,,x,,,,,,,,,,,,,,,x,x,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,, +Closure,97,3,2,0,1,1,1,1,0,1,2,1,0,0,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,x,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,x,,,,,,x,,,,x,,,,,,,,,,,,,,,,,,,,,, +Closure,98,6,3,0,1,2,2,19,0,0,19,5,201,127,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,,x,,,,x,,,x,,,,,,,x,,,,,,,,,,,,x,x,,,,x,,,,,,,,,,,,,,x,,,,,,,,,,,,,,New class attributes were added.,,,,,,,,,,,, +Closure,99,6,3,0,1,1,1,5,0,1,6,4,39,26,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,x,,x,,,,x,x,,,,,,,,,,,,x,,,,,,,,,,,,,,,,x,,x,,,,,,,,,,,,x,,,,,,,x,,,,,x,"Changed condition in expression, adds an extra computing in line 131.",,,,,,,,,,,, +Closure,100,6,2,0,1,1,1,7,0,1,8,2,47,34,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,x,,,,,x,,,,,,,,,x,x,,,,,,,,,,,,x,,,,,x,,,,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,,,, +Closure,101,2,1,0,1,1,1,1,3,0,4,2,1,0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,x,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,x,,,,,,,,,,,,, +Closure,102,1,2,0,1,1,1,1,1,0,2,2,5,5,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,x,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,, +Closure,103,5,4,0,2,2,2,8,0,0,8,3,3,0,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,x,,,x,,x,,,,,,,,,,,,,,,,,,,,,,,x,,,x,x,x,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,, +Closure,104,2,2,0,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,x,,,,,,,,,x,,,,,,,,,,,A Null-Check was removed and replaced by another condition.,,,,,,,,,,,, +Closure,105,7,3,0,1,1,1,2,0,5,7,5,19,16,,,,,,,,,,,x,,,,,,,x,x,,,,,,,,,,,,,,x,,x,,,,x,,x,,,,,,,,,,,,,,,,,,,,,x,,x,,,,,x,,,,,,,,,,,,,x,,,,,,,x,,,,,Moves the instantiation of StringBuilder to another place.,,,,,,,,,,,, +Closure,106,4,3,0,2,2,2,4,2,0,6,3,1,1,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,,x,,,,,,,,,,,x,,,,,,,,x,,,,x,,,,,x,,,,,,,,,,,,,,,,,,,,,,x,,,,,x,,,,,,,,,,,,, +Closure,107,1,1,0,1,1,1,1,0,0,1,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,x,,,x,,,,,,,,,,x,,,,,,,,,,,,, +Closure,108,4,1,0,1,3,1,3,0,1,4,4,322,230,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,x,,x,,,,x,,,,,,,,Added new class attribute and its initialization. An existent conditional expression with Null-Check was expanded with another condition.,,,,,,,,,,,, +Closure,109,5,3,0,1,1,1,4,0,1,5,1,0,0,,,,,,,,,,x,,x,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,x,x,,,x,,,,,,,,,x,,,,,,,,,,,,x,,,,,,x,,,,,,,,x,,,,,,,,,,,,,,,,,,, +Closure,110,12,7,0,2,2,2,21,0,4,25,12,47,22,,,,,,,,,,x,x,,,,,,,x,,,x,,,,,,,,x,,,x,x,x,x,,,,x,,x,,,,,,,x,,,,x,,,,,,,,x,,x,,,x,x,x,,x,,,,,,,,,,,,x,x,,,,,,,,,,,,,,,,,,,,,,,, +Closure,111,3,2,1,1,1,1,1,0,1,2,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,x,,,,x,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,X +Closure,112,6,1,0,1,1,1,6,0,3,9,1,0,0,x,,,,,,,,x,x,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,x,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,Adds an inline interface implementation for a parameter of type Predicate on filterKeys method call.,,,,,,,,,,,, +Closure,113,2,2,1,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,x,,,,,,,,,x,,,,,,,,,,,"Again, an existent condition with Null-Check was expanded with other condition.",,,,,,,,,,,,X +Closure,114,2,2,1,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,X +Closure,115,5,1,1,1,1,1,0,11,0,11,2,25,15,,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,,,,x,,x,,,,,,,,,,x,,,,,,,,,,,,,x,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,X +Closure,116,5,2,2,1,2,1,12,0,0,12,2,26,15,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,x,,,,,x,,,,,,,,,,x,,,,,,,,,,,,x,x,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,Strange... what is removed in 115 is added again in 116.,,,X,,,,,,,,,X +Closure,117,9,1,0,1,1,1,12,12,0,24,3,31,20,,,,,,,,,,,,,,,,,x,,,,x,x,,,,,,,,,,,,x,,,,x,x,x,,,,,,,,,x,x,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,Move a block of code.,,,,,,,,,,,, +Closure,118,2,1,0,1,1,1,3,0,0,3,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,, +Closure,119,1,2,1,1,1,1,1,0,0,1,1,0,0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,x,,,,,,,,,x,,,,,,,,,,,"""Case"" Added to switch... Should be considered a ""missing block"" too?",,,,,,,,,,,,X +Closure,120,3,1,1,1,1,1,3,0,0,3,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,x,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,X +Closure,121,2,2,1,1,1,1,2,0,1,3,2,3,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,X +Closure,122,5,1,0,1,1,1,1,0,1,2,1,0,0,,,,,,,,,,x,x,,,,,,,,,,x,,,,,,,,,,,,x,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,x,,,,,x,,,,,,,,,,,,,,,,,,,,,, +Closure,123,3,2,0,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,x,,,,,x,,,x,x,,,,,,,,,,,Changes value in assignment from constant to method call.,,,,,,,,,,,, +Closure,124,2,1,2,1,1,1,2,0,0,2,2,1,1,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,,x,,,,,,,,,,,,,X,,,,,,,,,X +Closure,125,2,2,1,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,x,,,,,,,,,x,,,,,,,,,,x,"Again, conditional expression with Null-Check was expanded with new condition.",,,,,,,,,,X,, +Closure,126,4,1,5,1,1,1,0,4,0,4,1,0,0,,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,,,,x,,x,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,X,,,,X,X,,X,,X +Closure,127,5,3,2,1,2,1,9,0,1,10,2,6,5,x,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,x,,,x,,,,,,,,,,,,,,x,,,,,,,,,,,,x,,,,x,,x,,,,,,,,,,,,,x,,,,,,,,,,,,x,,,,,X,,,,,,,,,X +Closure,128,3,2,0,1,1,1,3,0,1,4,2,6,6,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,x,x,,,,,,,,,,,,x,,,,,,,,x,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,, +Closure,129,3,0,2,1,1,1,3,0,0,3,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,x,,,,,x,,,,,,,,,Adds a loop to iterate over child of nodes.,,,X,,,,,,,,,X +Closure,130,1,2,2,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,x,,,,,,,,,x,,,,,,,,,,x,,,,X,,,,,,,,,X +Closure,131,2,2,2,1,1,1,1,0,1,2,2,5,4,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,x,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,X,,,,,,,,,X +Closure,132,2,2,2,1,1,1,2,0,1,3,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,X,,,,,,,,,X +Closure,133,1,1,3,1,1,1,1,0,0,1,1,0,0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,x,,,x,,,,,,,,,,,It seems that the variable is reseted by method.,,,X,,,X,,,,,,X +Lang,1,6,3,0,1,1,1,9,0,2,11,3,3,3,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,x,,,x,,,,x,,,x,,,,,,,,,,,,,,,,,,,,x,,x,,,x,,,,,,,,,,,,,x,,,,,,,,,,,,,x,,,,,,,,,,,,, +Lang,2,4,1,0,1,1,1,3,0,0,3,1,0,0,,,,,,,,,,x,,,,,,,,x,,,,,,,,,,,x,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,, +Lang,3,1,2,0,1,1,1,4,0,0,4,4,12,11,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,x,,,,,,,,,,,,, +Lang,4,5,1,0,1,1,1,0,0,4,4,4,43,27,,,,,,,,,,x,,,,,,,,,,x,,,x,,,x,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,x,x,,,,x,,,,,,,,Type change with adjust in related calls/operations.,,,,,,,,,,,, +Lang,5,6,3,0,1,1,1,21,0,0,21,2,31,31,,,,,,,,,,x,,,,,,,,x,,,,,,,,,,,x,,,,,,x,,,,x,,,,,,,,,,x,,,x,,,,,,,,x,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,, +Lang,6,2,3,3,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,,,,,x,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,x,,x,,,,,,,,,x,,,,,,,,,,,,,,,,,,X,X,X,,, +Lang,7,6,2,4,1,2,1,3,3,0,6,3,270,167,,,,,,,,,,x,x,,,,,,,x,,,,,,,,,,,x,,,,x,,,,,,,,,,,,,,,,,x,,,,,,,,,,x,,,x,,,,,,,,,,,,,,x,,,,,,,,,,,x,,,,,,"In one of the chunks, removes a conditional block with return.",X,,,,X,X,,,,,X, +Lang,8,5,0,0,1,2,1,1,2,0,3,3,34,14,,,,,,,,,,x,,,,,,,,,,,x,x,,,,,,,,,,,,,,,,,x,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,x,,,x,,,x,,,,,,,,,Transformed a class attribute in local var.,,,,,,,,,,,, +Lang,9,4,1,0,1,1,1,3,0,0,3,1,0,0,,,,,,,,,,x,,,,,,,,x,,,,,,,,,,,x,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,, +Lang,10,4,1,2,1,1,1,0,9,0,9,2,2,2,,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,x,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,x,,,,,,,,,,x,,,,,,,,X,X,,,,,, +Lang,11,4,2,0,1,1,1,4,0,0,4,1,0,0,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,x,,,,,x,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,, +Lang,12,5,3,0,1,1,1,7,0,0,7,3,8,7,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,x,,,,,x,x,,,,x,,,,,,,,,,,,,x,,,,,,,,x,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,, +Lang,13,8,3,0,1,2,1,19,0,0,19,4,30,12,,,,,,,,,,x,,,,,,,,x,,,x,,,,,,x,,x,,,,,,x,,,,x,,,,,,,,,,x,,,,,x,,,,,,x,x,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,, +Lang,14,3,1,1,1,1,1,3,0,0,3,2,1,1,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,x,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,X,,,,,, +Lang,15,4,2,0,1,1,1,0,0,4,4,2,453,226,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,x,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,x,,,,,,,,x,,,,,x,,,,,,,x,Change local var type.,,,,,,,,,,,, +Lang,16,2,2,0,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,x,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,, +Lang,17,6,2,0,1,1,1,2,8,1,11,6,11,9,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,x,x,x,x,,,,,,,,,,,,,,,,x,x,,,,,,,,,,,,,,,,,,,,,,x,x,x,,,,,,,,,,,,"Unwraps input.length() from ""Character.codePointCount()"" method. Unwraps ""for loop"" from else branch. Unwraps ""pos += ..."" from if-else branch.",,,,,,,,,,,, +Lang,18,3,2,0,1,1,1,2,2,1,5,2,1,1,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,x,,x,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,x,,,,,,,An existent if-else structure is removed and a new one is placed in an action that resembles a wrap-with replacement. An aditional wrap-with-IfElse is present in IfElse-CondExp form.,,,,,,,,,,,, +Lang,19,9,5,0,1,1,1,6,0,3,9,5,38,29,,,,,,,,,,x,x,,,,,,,,,,x,,,,,,,,,,,,x,x,x,,,,x,,,,,x,,,,x,,,,x,,,,,,,,,x,,,,,,,,x,x,,,,,x,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,, +Lang,20,4,2,1,1,2,1,0,0,2,2,2,84,27,,,,,,,,,,,x,,,,,,,,,x,,,,,,,,,,,,,,,,,,x,,,x,,,,,,,,,,,,,,,,,,,,,,x,x,,,,,,,,,,,,,,,,,,x,,x,,,,,,,,,,"Null-Check is removed from ""buf"" initialization.",,,,,X,,,,,,, +Lang,21,3,4,1,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,,,,,x,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,x,,,x,,x,x,,,,,,,,x,,,,,,,,,,,,,,,,,,X,,,,, +Lang,22,5,3,3,1,1,1,6,0,1,7,2,1,0,,,,,,,,,,x,,,,,,,,x,,,,,,,,,,,x,,,,x,,,,,,,,,,,,,,,,x,,,,,,,,,,,x,x,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,x,,,,,,,,,,X,X,,,,,X, +Lang,23,6,1,0,1,2,1,31,0,0,31,3,196,105,x,,,,,,,,x,x,,,,,,,,,,,x,,,,,,,,,,,,,x,,,,,x,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,x,x,,,,,,,,,,,,,,,Implements equals and hascode to work with hash structures of Collections,,,,,,,,,,,, +Lang,24,1,2,6,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,x,,,,,,,x,,,,,,,,,x,,,,,,,,,,,,X,,,,X,X,,,X,X,X, +Lang,25,1,1,0,1,1,1,0,0,27,27,1,0,0,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,x,,,,,,,,,,,x,Changes keys in a vector of type key-value.,,,,,,,,,,,, +Lang,26,1,2,1,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,x,,,,,,,,x,x,,,,,,,,,,,Adds a new parameter to constructor call (call overloaded constructor),,,,,,,,,X,,, +Lang,27,4,2,2,1,1,1,3,0,1,4,2,9,9,,,,,,,,,,x,,,,,,,,x,,,,,,,,,,,x,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,x,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,X,X,,,,,, +Lang,28,3,1,0,1,1,1,6,0,0,6,2,1,1,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,, +Lang,29,1,1,0,1,1,1,0,0,1,1,1,0,0,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,x,,,,,,,,,,x,Changes return type of method.,,,,,,,,,,,, +Lang,30,11,7,0,1,6,1,38,0,5,43,20,305,102,,,,,,,x,,,x,x,,,,,,,,,,x,,,,,,,,,,x,x,x,x,x,,,,x,,,,,,,,,,x,,x,x,,,,,,,,,x,x,,x,,,x,,x,,,,,,,,,,,x,x,,,,,,,,,,,,,,,,,,,,,,,,, +Lang,31,4,2,0,1,1,1,8,0,0,8,4,7,5,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,,x,,,,,,,,,,,,,,x,,,x,,,,,,,,,x,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,x,,,,Partially the same as Lang 30,,,,,,,,,,,, +Lang,32,7,4,0,1,3,1,14,5,3,22,4,427,74,,x,,,,,,,x,x,,,,,,,,,,x,x,,,,,,,,,,,,,x,,,,,,,,,,,,,,x,,,,,,,,,,,,,,x,,,x,x,,,x,,,,,,,,,,,,,x,,,,,,,,,,,,Applies null check using synchronized block with object lock (HashCodeBuilder.class),,,,,,,,,,,, +Lang,33,1,3,3,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,x,,,,,,,,,x,,,,,,,,,x,,,,,,,,,,,Wrap-with applied with IfElse-Expression,,,,,,,X,,X,X,, +Lang,34,3,3,0,1,2,1,0,0,2,2,2,15,3,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,x,,,,,,,,,x,,,,,,,,,x,x,,,,,,,,,,,,,,,,,x,,,,,,,,,x,,,,,,,,,,,,, +Lang,35,4,0,1,1,2,1,0,0,2,2,2,278,62,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,x,,,,,,,,,,"Changes return of a null object to throw an Exception. The only statement of an existent ""else block"" is replaced by an exception throw.",X,,,,,,,,,,, +Lang,36,3,2,0,1,1,1,8,0,1,9,2,896,471,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,x,,,,,,,,,,,,,,,x,,,,,,,,,,,,x,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,, +Lang,37,7,2,0,1,1,1,8,0,0,8,3,2,1,,,,,,,,,,x,,,,,,,,x,,,x,,,,,,x,,x,,,,,x,,,,,x,,,,,,,,,,,,,,,x,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,, +Lang,38,1,1,4,1,1,1,1,0,0,1,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,x,x,,x,,,,,,,,,,,,,,,,X,,,,X,X,X, +Lang,39,1,2,5,1,1,1,3,0,0,3,1,0,0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,x,,,,,,,,,,,,,,,x,,,,,x,,,,,,,,x,,,,,,X,X,,,X,X,X, +Lang,40,7,1,0,1,1,1,7,0,1,8,1,0,0,,,,,,,,,,x,x,,,,,,,,,,x,,,,,,,,,,,,,,,,,,x,,,x,,,,,,x,x,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,,,, +Lang,41,8,2,0,1,2,1,19,0,2,21,8,58,23,,,,,,,,,,x,,,,,,,,x,,,x,,,,,,,,,,,x,,x,,,,,x,,,x,,,,,,x,,,,,,,,,,,,,,x,,,,,x,,,,,,,,,,,,,x,,,,,,,,,,,,,,Existent condittional expression with null-check is expanded.,,,,,,,,,,,, +Lang,42,6,2,0,1,1,1,5,0,2,7,2,2,2,,,,,,,,,,x,,x,,,,,,,,,,,x,,,,,,,,,,,,x,,,,x,,x,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,x,,,,,,x,,,,,,,,,,x,,,,,,,,,,,,,,,,, +Lang,43,1,1,3,1,1,1,1,0,0,1,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,x,,,x,,,,,,,,,,,,,,,,,,X,X,X,,, +Lang,44,4,1,3,1,1,1,3,0,0,3,1,0,0,,,,,,,,,,x,,,,,,,,x,,,,,,,,,,,x,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,x,,,,X,,,,,,X,,,X +Lang,45,3,1,1,1,1,1,3,0,0,3,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,x,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,x,,,,,x,,,,,,,,,,,,,,,,,,,X,, +Lang,46,5,1,0,1,6,1,3,0,7,10,9,152,82,,,,x,,,,,,,,x,,x,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,x,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,x,,,,,,,,,,,,, +Lang,47,2,3,0,1,2,1,6,0,0,6,2,44,21,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,x,,,,,,,,,,,,,,,,,,,,,,,x,,x,x,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,, +Lang,48,3,1,0,1,1,1,4,0,0,4,2,2,1,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,x,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,, +Lang,49,4,2,0,1,1,1,3,0,0,3,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,x,,,,,,,,,,,,,,x,,,,,,,,,,,,x,x,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,x,,,,,,,,,,,,, +Lang,50,8,4,0,1,2,1,2,6,4,12,6,179,68,,,,,,,,,,x,x,,,,,,,x,x,,,,,,,,,,,,,,x,,,,,x,x,x,,,,,,,,,,,,,,,,,x,,,,,,x,x,,,,,x,,,,,,,,,,x,,,,,,,,,,,,,,,"Replaces some existent Null-Chek, inverting postive by negative.",,,,,,,,,,,, +Lang,51,1,1,4,1,1,1,1,0,0,1,1,0,0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,x,,,,,,,,,,,"Adds a return statement that does the role of an ""else"" branch.",,,X,,,,,,X,X,,X +Lang,52,2,1,0,1,1,1,4,0,0,4,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,x,,,,,x,,,,,,,,,,,,,,,,,,,, +Lang,53,0,3,2,1,1,1,2,2,0,4,4,10,8,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,x,,,,,,,x,,,,,,,,,,x,,,,,x,,,,,,,,,,,X,,,,,,,,,X +Lang,54,4,1,0,1,1,1,3,0,0,3,1,0,0,,,,,,,,,,x,,,,,,,,x,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,x,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,x,,,,,x,,,,,,,,,,,,,,,,,,,,, +Lang,55,1,1,2,1,1,1,2,0,0,2,2,1,1,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,X,,,,,,,X,, +Lang,56,4,0,0,1,1,1,4,0,2,6,3,880,425,x,,,,,,,,x,x,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,x,,,,,,,,x,,,,,,Changes types modifiers and overrides method related to Serialization.,,,,,,,,,,,, +Lang,57,3,2,2,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,x,,,,,,,,,x,,,,,,,,,,,Changes direct acces of an object to method call.,,,,,,,,X,X,,, +Lang,58,1,1,3,1,1,1,0,1,1,2,1,0,0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,x,,,,,,,,,,,,,X,,,,,,X,,,X +Lang,59,2,2,2,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,,,,,x,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,x,,,,,x,,,,x,,,,,,,,,,,,,,,,,,X,,X,,, +Lang,60,2,2,0,1,2,1,0,0,2,2,2,56,21,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,x,,,x,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,, +Lang,61,2,3,1,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,x,,x,,,,,x,,,,x,,,,,,,,,,,Changes/fix computing of a variable.,,,,,,,,,,X,, +Lang,62,2,2,0,1,1,1,8,0,0,8,4,76,61,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,x,,,,,,,,,,,,,,,,,,,,,,,x,,x,,,,,,,,,,,,,,,,x,,,,,,,,,,x,,,x,"Added a ""break"" in ""case"" branch.",,,,,,,,,,,, +Lang,63,8,1,1,1,2,1,2,19,1,22,4,118,91,,x,,,,,,,,x,x,,,,,,,,,,,x,,,,,,,,,,,,,,,,x,,x,x,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,x,,,,,,,x,x,x,,,,,,,,,,,,,,,,,,X,,,,,,,,, +Lang,64,9,3,0,1,2,1,21,0,0,21,5,12,2,x,,,,,,,,,x,,,,,,,,x,,,x,,,,,,x,,x,,,,,x,,,,,x,,,,,,,,,,x,,,,,,,,,,,x,x,x,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,x,,,,,,,,,,,,, +Lang,65,5,3,0,1,1,1,30,0,0,30,8,86,50,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,x,,,,,x,,,,,,,,,,x,,x,,,,,,,,,,x,x,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,, +Math,1,2,2,0,2,2,2,6,0,0,6,2,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,x,,,,,,,,,,,,,,,,x,,,,,,,,x,,,,,x,,,,,,,,,,,,, +Math,2,1,2,8,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,x,,,,x,,,,,,,,,x,,,,,,,,,,,Apply a casting to returned value of an expression.,,X,X,X,X,X,,,X,,X,X +Math,3,2,1,1,1,1,1,3,0,0,3,2,1,0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,x,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,x,,X,,,,,,,,,,, +Math,4,2,3,2,2,2,2,6,0,0,6,2,0,0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,x,,,,,,,,,,,,x,,,x,x,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,"Almost a copy, the only difference is in involved variable.",X,,,,,,,,,,,X +Math,5,1,3,9,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,x,,,,x,x,,,,,,,,x,,,,,,,,,,,,X,,X,X,X,X,,X,X,X,X, +Math,6,8,4,2,7,7,7,2,4,12,18,17,327,240,,,,,,,,,,x,,,,,,x,,,,x,,x,,,,x,,,,,,,x,,,,,,,x,x,,,,,,,,,,,,,,,,,,,,,,,x,,,,,x,,,x,,,x,,,,x,,,x,,,,,,,,,,,,A parameter value passed through the constructor during object instantiation is changed. A local variable is removed and expressions to increment it are replaced by equivalent method call.,,,,,X,X,,,,,, +Math,7,6,3,3,1,1,1,5,6,3,14,4,18,11,,,,,,,,,,,x,,,,,,,,,,,,,,x,,,,,,,,,,,,,,x,x,x,,x,,,,,,,,,,,,,x,,,,,,,,x,,,,,,,,x,,,,,,,x,,,,,,,,,,,,,,,Changes involving adding and removing of many loops.,,,,X,X,,,,,,,X +Math,8,3,0,5,1,1,1,0,0,2,2,2,5,4,,,,,,x,,,,,x,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,x,,,,,,,,,,Ajust the object initialization to reflect type changed.,,X,,X,X,X,,,,,X, +Math,9,4,1,0,1,1,1,1,0,1,2,1,0,0,,,,,,,,,,x,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,x,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,x,,x,,,,,,,,,,Replaced constructor by overloaded version. Changes object attribute value by direct assignment.,,,,,,,,,,,, +Math,10,2,1,0,1,1,1,1,0,0,1,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,x,,,x,,,,,,,,,,,,,,,,,,,,,,, +Math,11,2,2,0,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,x,,,,x,,,,,,,,,x,,,,,,,,,,x,,,,,,,,,,,,, +Math,12,3,0,0,1,0,1,3,0,1,4,3,11,3,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,x,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,x,,,,,,,,imports and implements java.io.Serializable.,,,,,,,,,,,, +Math,13,7,1,0,1,1,1,9,0,0,9,2,2,2,,,,,,,,,,x,,,,,,,,x,,,x,,,,,,,,,,,,,,x,,,,x,,,x,,,,,,,x,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,x,,,Contains the patch of Math-13,,,,,,,,,,,, +Math,14,10,1,0,2,2,2,9,3,1,13,3,2,2,,,,,,,,,,x,x,,,,,,,x,,,x,,,,,,,,,,,,,,x,,,,x,x,,x,x,,,,,,x,,,x,,,,,,,,,,,,,,,,,,,,,,,,,x,,,x,x,,,,,,,,,,,,,,,,,,,,,,,,, +Math,15,3,1,0,1,1,1,1,0,1,2,2,1228,742,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,x,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,x,,x,,,,,,,,,,,,,,,,,,,,,, +Math,16,5,2,0,1,2,1,19,0,2,21,11,377,235,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,,x,,,,x,,,,,,,,,,x,,,x,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,, +Math,17,3,1,0,1,1,1,4,0,0,4,2,1,1,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,x,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,x,,,,,,,x,,,,,,,,,,,,, +Math,18,5,2,2,1,3,1,2,0,4,6,5,60,38,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,x,,,,,,x,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,x,,,,,,,,,x,,,,,,,,,x,,,,,,,,,,,X,X,,,,,, +Math,19,7,1,0,1,1,1,13,0,0,13,1,0,0,,,,,,,,,,x,,,,,,,,x,,,x,,,,,,,,x,,,,,x,,,,,x,,,x,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,x,,,,,,,,,,,,, +Math,20,4,3,4,1,1,1,1,0,1,2,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,x,x,,,x,,,,,,,,,,,,,,x,,,,,,,,x,,,,,,,x,,,x,,,,,,,,,,"Adds a new return output alternative through conditional expression of the form ""exp?a:b"". Something to think: ""Is it a change in return expression, a return branch adding or both?"". For now, it is considered as both.",,,,,X,X,,,X,,X, +Math,21,6,3,0,1,1,1,4,1,9,14,6,50,31,,,,,,,,,,,,,,,,,,,,,x,x,,,x,,,,,,,,,x,,,,,x,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,x,,x,,,,,,,x,,,,,,,,,,,,,,x,,,,,,,,,,,,, +Math,22,1,1,2,2,2,2,0,0,2,2,2,0,0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,x,,,,,,,,,x,,,,,,X,,,X,,,, +Math,23,5,1,0,1,1,1,7,0,2,9,5,124,104,,,,,,,,,,x,,x,,,,,,,,,x,,,,,,,,,,,,,,,,,,x,,,,,,,,,x,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,Call overloaded method with extra params. New variable is added with its initialization.,,,,,,,,,,,, +Math,24,2,2,3,1,1,1,0,0,2,2,2,36,34,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,x,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,X,,X,,,,,,,X +Math,25,3,1,1,1,1,1,3,0,0,3,2,2,0,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,x,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,X,,,,,,,,,,, +Math,26,2,2,0,1,1,1,0,0,2,2,2,27,21,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,, +Math,27,2,3,0,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,x,,,,,,,,,,,,x,,,,x,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,, +Math,28,2,1,7,1,1,1,4,0,0,4,4,33,23,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,x,,,X,X,X,X,X,,,,,X,X +Math,29,10,1,0,1,2,1,12,1,3,16,2,21,12,,,,,,,,,,x,x,,,,,,,,,,x,x,,,,,,,,,,,,x,x,,,,x,x,,x,x,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,x,x,x,,,,,,,,,,,,,Changed a while loop to a for lor loop.,,,,,,,,,,,, +Math,30,1,1,2,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,x,,,,,,,,,,,,,,,,,X,,,X,,, +Math,31,11,4,0,1,1,1,1,21,12,34,4,23,17,,,,,,,,,,x,x,,,,,,,,x,,x,x,,,x,,,,,x,,,,,,,,x,x,x,,,x,,,,,,,,,,,,,,,,,,,x,x,,,,,,,x,,x,,,,,x,,x,,,,,,,,,,,,,,,,,,,,,,,,,,, +Math,32,2,3,6,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,x,,,,,,,x,,,,,,,,,x,,,,,,,,,,,,,X,X,,X,X,,,X,X,, +Math,33,2,3,5,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,,,,,x,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,x,,x,,,,,,,,,x,,,,,,,,,,x,A variable used in a method call is replaced by another one.,,,X,,,X,X,,X,,,X +Math,34,2,2,2,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,x,,,,,,x,,,x,,,,,,,,,,x,A direct class attribute access was replaced by a method call that gives indirect access to the object.,,,,,,,,X,X,,, +Math,35,3,3,1,1,2,1,0,0,2,2,2,13,3,,,,,,,,,,x,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,x,,,,,,,,,x,,,,,,,,x,,,,,,,,,,,,x,,,,,,,,,,Similar to Math-34,X,,,,,,,,,,, +Math,36,4,2,0,1,2,1,12,0,0,12,4,49,17,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,x,,,,,x,,,,,,,,,,,,,,,,,,,,,,,x,,x,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,"The change is almost the same in two different places. The only difference between changes is the use of the call ""doubleValue()"" in place of ""floatValue()"" in correspondent methods.",,,,,,,,,,,, +Math,37,4,3,0,1,2,1,12,0,2,14,4,46,11,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,x,,x,,,,,,,,,,,,,,,x,,,,,,,,,,,,x,,,x,,,x,,,,,,,,,,,,,x,,,,,,,,,,,,,x,"The changes are almost the same in two different places... same structure, but with variattions in the parameters/arguments.",,,,,,,,,,,, +Math,38,3,2,1,1,1,1,0,0,4,4,3,89,70,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,x,,,,,,,,,x,,,x,,,,x,,,,,,,,Removes Exception Thrown. The throws line is commented in code... maybe the change isn't a final one.,,,,,,,,,,,,X +Math,39,3,1,1,1,1,1,9,0,0,9,1,0,0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,x,,,,x,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,x,,x,,,,,,,,,,,,,X +Math,40,3,2,7,1,1,1,6,0,2,8,2,2,1,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,x,,x,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,x,,,,,,,,,x,,,,,,,,,,,x,,,,,,X,X,X,X,X,,,,,X,X +Math,41,4,2,3,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,x,,,x,x,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,x,,,,,,,,x,x,,,,,,,,,,,The changes were made only inside the for loop.,,,X,,,X,,,,,,X +Math,42,1,2,2,1,1,1,2,0,1,3,2,3,0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,x,,,,,,,,,,,,,x,,,,,,x,,,,,,,,,,,,X,,,,,,,,,X +Math,43,1,1,0,1,1,1,0,0,3,3,3,4,4,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,, +Math,44,5,1,4,1,1,1,6,1,0,7,3,62,39,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,x,x,,x,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,x,,,,,,,,,x,,,,,The variable and assignment adding are part of the for loop.,,,X,,X,,,,,,X,X +Math,45,5,1,0,1,1,1,5,0,0,5,1,0,0,,,,,,,,,,,,,,,,,,x,,,x,,,,,,,,x,,,,,x,,,,,x,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,, +Math,46,2,2,2,1,1,1,0,0,2,2,2,36,23,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,x,,,,,,,,,x,,,,,,,x,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,"The removed if-else condition is in the form ""exp?a:b"".",,,X,,,X,,,,,, +Math,47,5,3,0,1,1,1,2,0,3,5,4,209,80,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,x,,x,,,,x,,,,,,,,,x,,,,x,,,,,,,,,,,,x,,,,,x,,,,,,,,,,x,,,,,,,,x,,,,,,,"The ""WrapWith"" condition is in the form ""exp?a:b"". The added variable is a class attribute.",,,,,,,,,,,, +Math,48,3,1,0,1,1,1,3,0,0,3,1,0,0,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,x,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,, +Math,49,2,2,7,1,4,1,0,0,4,4,4,35,29,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,x,,,,,,,,,,,,,,x,,,,,,,,Changed the target of a iterator access.,,X,X,X,X,X,,,,,X,X +Math,50,3,1,11,1,1,1,0,4,0,4,1,0,0,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,x,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,x,,,,,x,,,,,,,,,,X,X,X,X,X,X,X,X,X,X,X +Math,51,7,1,0,1,1,1,9,0,0,9,3,4,1,,,,,,,,,,x,,,,,,,,x,,,x,,,,,,,,x,,,,,x,,,x,,x,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,x,,,Adds an exception throw in default clause of switch-case.,,,,,,,,,,,, +Math,52,4,1,0,1,1,1,1,0,3,4,3,13,7,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,x,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,x,,,,x,,,,,,,,New variable is added with its initialization.,,,,,,,,,,,, +Math,53,2,1,6,1,1,1,3,0,0,3,1,0,0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,x,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,X,X,,X,X,,X,X, +Math,54,7,2,0,1,1,1,6,0,1,7,2,2046,1332,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,x,x,x,,,,x,,,,,,,,,,x,,,x,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,x,,,,,,,,x,,,,,,,,,,,,,,,,, +Math,55,8,2,0,1,1,1,17,0,1,18,5,14,0,,,,,,,,,,x,,,,,,x,,,,x,x,,,,,,,,,,,,,x,,,,,x,,,,,,,,,x,x,,,,,,,,,,,,x,,,,,,,,,x,,,,,,,,,x,,,x,,,,,,,,,,,,,,,,,,,,,,,, +Math,56,4,1,2,1,1,1,0,6,1,7,1,0,0,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,x,x,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,x,,x,,,,,,,,,,x,,,,,Replaces a wrong and more complex calculation by the correct and simpler one.,,,,,X,,,,,,X, +Math,57,1,1,6,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,x,,,,,,,,,,,Just changed the declared type of a primitive variable.,,,X,,X,X,X,,X,,,X +Math,58,4,2,6,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,x,,,x,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,x,x,,,,,,,,,x,,,,,,,,,,,Call overloaded method without one parameter.,,,X,,X,X,X,,X,,,X +Math,59,2,2,1,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,x,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,X,,, +Math,60,8,3,3,1,1,1,2,9,1,12,2,2,2,,,,,,,,,,x,,,,,,,,,,,,,,,,,,x,,x,,,,x,x,,,x,,,,,,,,,,,x,x,,,,,,,,,x,,x,,x,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,Unwraps try-catch.,,,,X,X,X,,,,,, +Math,61,2,0,1,1,1,1,0,0,2,2,2,71,18,,,,,,,,,,,x,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,x,,x,,,,,,,,,,Replaces Exception Thrown. Changed the type of exception thrown. Changed the imported type.,X,,,,,,,,,,, +Math,62,13,2,1,1,1,1,0,1,3,4,2,13,9,,,,,,,,,,x,x,x,,x,,x,,,,,x,x,,,,,,,,,,,,,x,,,x,x,x,x,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,x,,,x,,,,,,x,,,,,,,x,,,,,,,,"Changes the way to compute ""optima[i]"", changing params for call to ""optimize"". Removed if-branch is in the form ""exp?a:b"".",,,,,,X,,,,,, +Math,63,3,2,3,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,x,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,x,,,,,x,,,,,,,,,x,,,,,,,,,,,,,,,,X,X,,,X,,, +Math,64,15,7,1,1,1,1,19,5,3,27,13,180,131,,,,,,,,,,x,x,,,,,x,x,x,x,,x,,,,x,,,,,,,,,x,,,,x,x,,x,x,,,,,,,x,x,,,,,,,,,,,x,x,x,,,x,,,,x,x,x,,,,,x,,x,,,,,,,,,,,,,,,Moved instantiation of object of type VectorialPointValuePair to another place (lines ahead).,,,,,X,,,,,,, +Math,65,7,2,0,1,1,1,0,5,2,7,2,12,5,,,,,,,,,,x,,,,,,x,,,,,,x,,,,x,,,,,,,,,,,,,,x,x,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,x,,,,,x,,,,,,,,,,,,x,,,,,,,,,,,,,,,,, +Math,66,19,4,0,1,4,1,0,11,11,22,12,178,129,,x,,,x,,,,x,x,x,x,,,x,x,,,x,,x,x,,,,x,,,,x,,,x,,x,,,,x,,,,,x,,,,x,,x,,,,,,,,,,,,,,,,,,,x,,,x,x,,x,,,,x,,,x,,,,,,,,,,,,,,,,,,,,,,,, +Math,67,2,1,0,1,2,1,0,0,2,2,2,4,2,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,A direct access to a vector was added in place of a value returned from a call to an object method. The change was similar in structure in two different places.,,,,,,,,,,,, +Math,68,9,3,0,1,1,1,10,0,2,12,9,253,160,,,,,,,,,,x,,,,,,,,x,x,,x,,,,,,,,,,,,,x,x,,,,x,,,,,,,,,x,x,,,x,,,,,,,,,x,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,New objects were instantiated. Objects instantiated before were removed too (line 419).,,,,,,,,,,,, +Math,69,2,2,3,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,x,,,,,x,,,,x,,,,,,,,,,,Fix assignment operation.,,,X,,,X,,,,,,X +Math,70,3,2,7,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,x,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,x,x,,,,,,,,,x,,,,,,,,,,,Call overloaded method without one parameter.,,,,X,X,X,X,X,X,,X, +Math,71,2,1,4,2,2,2,7,0,0,7,2,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,Three lines equal lines are added in two different places. Just line 302 is different.,,,X,X,X,,,,,,X, +Math,72,2,1,0,1,1,1,0,0,2,2,2,11,7,,,,,,,,,,,,,,,,x,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,x,,,,,x,,,,,,,,,,"Similar changes in two different places, the same melhod is targeted, the same argument is changed, only the new values applied are different.",,,,,,,,,,,, +Math,73,3,1,6,1,1,1,4,0,0,4,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,x,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,X,X,X,,,X,,X,X +Math,74,5,0,2,1,1,1,3,0,4,7,3,2,2,,,,,,,,,,x,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,x,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,x,,,x,,,,,,,x,,,,,A vector/object was instantiated.The way to initialize values was changed.,,,,,X,X,,,,,, +Math,75,2,2,1,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,x,x,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,X,,, +Math,76,7,5,0,1,1,1,6,0,8,14,12,95,67,,,,,,,,,,,,,,,,x,,,,,,,,,x,,,,,,,,,,x,,,,x,x,x,,,x,,,,,,,,x,,,,,,,,,,,,x,,,,,x,x,,x,,,,,,,,,,,,,,,,,,,,,,The structure of the changes are similar and applied in two different methods.,,,,,,,,,,,, +Math,77,8,1,1,2,2,2,0,9,1,10,2,0,0,,x,,,,,,,x,,x,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,x,x,,x,,,,,,,x,,,,,,,,,,,,,,,,,,,,x,,,,,,,x,,x,,,,,,,,,,,,,x,,"Fix a assignment. Removes a method (aparently, unrelated changes).",,,,,X,,,,,,, +Math,78,6,2,7,1,1,1,11,0,0,11,3,8,0,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,x,,,,,x,,,,,x,,,x,,,,,,,,,,,,,,,,,,x,,x,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,X,X,X,X,X,,,,,X,X +Math,79,1,0,2,1,1,1,0,0,2,2,2,1,1,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,x,,,,,,,,,,,,,,,,X,X,,,,, +Math,80,1,2,9,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,x,,,,,,,x,,x,,,,,,,,,,,Fix expression in assignment (added parathesis).,,X,X,X,X,X,,,X,X,X,X +Math,81,4,3,6,1,3,1,1,0,3,4,3,938,643,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,x,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,x,x,,,,,x,,,,,x,,,,,,x,,,,,,,,Fix/updates assignment to var upperSpectra.,,X,,X,X,X,,,,,X,X +Math,82,1,2,10,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,x,,,,,,,,,x,,,,,,,,,,,Changes operator in condition.,X,X,X,X,X,X,,X,X,X,X, +Math,83,3,2,0,1,2,1,0,0,3,3,3,51,34,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,x,,,,,,,,,"The added ""WrapWith"" uses ""exp?a:b"" format.",,,,,,,,,,,, +Math,84,6,1,5,1,1,1,9,0,0,9,3,30,15,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,x,,,,,x,,,x,,,,,,,x,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,x,,,,,X,,X,X,X,,,,,X, +Math,85,1,2,11,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,x,,,,,,,,,x,,,,,,,,,,,Changes operator in condition.,X,X,X,X,X,X,,X,X,X,X,X +Math,86,6,1,0,1,1,1,3,3,0,6,2,20,14,,,,,,,,,,,,,,,,,,x,x,,,,,,,,,,x,x,,,,x,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,x,,,,,,The condition to throw the exception is moved from one place to another.,,,,,,,,,,,, +Math,87,2,1,2,1,1,1,0,2,2,4,3,2,2,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,x,,,,,,,,,,,X,,,,,,,,,X +Math,88,8,2,3,1,1,1,5,6,0,11,4,7,5,,,,,,,,,,x,,,,,,,,x,,,x,,,,,,,,,,,,,,x,,,x,x,x,,,x,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,,x,,x,,,,,,,,,,,,,,,,,,X,,,X,,,,,,X +Math,89,3,1,1,1,1,1,4,0,0,4,2,1,1,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,x,,,,,,x,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,X,,,,,,,,,,, +Math,90,2,0,1,1,2,1,3,0,0,3,2,11,0,x,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,x,,,,,,,,,Added a new overloaded method reusing part of the implementation of an existing one. The old method just call the new one.,X,,,,,,,,,,, +Math,91,3,1,0,1,1,1,0,0,2,2,1,0,0,,,,,,,,,,,x,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,x,,,x,,x,,,,,,,,,,The value of a class attribute is accessed in place of a method to do the assignment.,,,,,,,,,,,, +Math,92,15,6,0,1,2,1,48,5,1,54,12,92,19,,,,,,,,,,x,x,,,,,x,,x,x,,x,,,,,,,,x,x,,,,x,x,,,x,x,,x,x,,,,,,,x,,,,,,,,,,,x,x,x,x,,,,,,,x,,,x,,,,x,,,x,x,,,,,,,,,,,,,,,,,,,,,,,,, +Math,93,7,3,1,1,2,1,8,0,2,10,3,50,15,,,,,,,,,,x,,,,,,,,x,,,,x,,,,,,,x,,,,x,x,,,,,,,,,,,,,,,x,,,,,,,,,,,x,x,,,,,,,,x,,,,,,,,,,x,x,,,,,,,,,,,,x,,,X,,,,,,,,,,, +Math,94,1,2,1,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,x,,,,,,,,,x,,,,,,,,,,,,,,,,,,X,,,,, +Math,95,2,1,4,1,1,1,2,0,1,3,3,3,2,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,x,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,x,,,,,,,,,,,X,,X,,X,,,,,X, +Math,96,2,3,0,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,x,,,,,,,,,,,x,,,,,x,,,,,,,,,x,,,,,,,,,,,Changes logical expression in assignment,,,,,,,,,,,, +Math,97,4,3,2,1,1,1,14,0,2,16,5,9,5,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,x,,x,,,,x,,,,,,,,,,,,,x,,,,,,,,,,x,,,,,,,x,,,,,,,,,,,,x,,,,,,,,,,,,,,,,X,,,X,,,,,, +Math,98,1,2,1,2,2,2,0,0,2,2,2,0,0,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,x,,,,,,,,,,x,,x,,,,,,,,,,Changes dimension of two vectors.,,,,,X,,,,,,, +Math,99,3,1,1,1,2,1,8,0,0,8,2,171,68,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,x,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,Instantiates a vector object as part of the exception creation.,X,,,,,,,,,,, +Math,100,2,2,0,1,2,1,0,0,3,3,3,39,26,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,x,,,,,,,,,,,,x,,,,,,,,,Apply the same replace of methods in three different places.,,,,,,,,,,,, +Math,101,2,2,2,1,1,1,1,0,1,2,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,x,,,,,,,,,,x,,,,,,,,,,,,,X,,,X,,,,,, +Math,102,6,2,0,1,1,1,17,0,0,17,3,5,5,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,x,x,,,,x,,,x,,,,,,,,,,x,,,,,,,,,,x,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,, +Math,103,3,3,0,1,1,1,10,0,0,10,2,2,2,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,x,,,,,,,,,,,,,,x,,,,,x,,,,,,x,x,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,x,,,,,,,,,,,,,, +Math,104,1,2,2,1,0,1,0,0,1,1,1,0,0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,x,,,,,,,x,x,,,,,,,,,,,,,,,,,X,,,X,,, +Math,105,2,2,4,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,x,,,,,,,,,,,,,,,,,,,x,,,,,,,,,x,,,,,,,,,,,,,,X,,,X,,,,X,,X +Math,106,3,2,0,1,1,1,8,0,0,8,4,36,18,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,x,,,,,,,,,,,,x,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,Only one variable is different between the two blocks of code in patch.,,,,,,,,,,,, +Mockito,1,6,1,0,1,1,1,11,0,1,12,1,0,0,,,,,,,,,,,,,,,,,,,x,,x,,,,,,,,,x,,,,x,,,,,x,,,x,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,, +Mockito,2,4,1,0,1,2,1,7,0,0,7,3,25,13,x,,,,,,,,,x,,,,,,,,x,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,x,,,,,,,,,x,,,,,import and instantiate a new Reporter object. It appears as an validation object/procedure.,,,,,,,,,,,, +Mockito,3,9,1,0,1,2,1,15,1,2,18,3,13,12,x,,,,,,,,,x,x,,,,,,,x,,,x,,,,,,,,,,,,,,x,,,,x,,,x,,x,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,, +Mockito,4,3,4,0,1,3,1,3,0,2,5,3,251,223,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,x,,,,,,x,,,,,,x,,,x,x,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,, +Mockito,5,1,1,0,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,x,,,,,,,,,,,Change parameter type in catch command.,,,,,,,,,,,, +Mockito,6,3,3,0,1,20,1,0,0,20,20,20,320,41,,,,,,,,,,,,,,,,x,,x,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,x,x,,,,,,,,,,,,,,,,,,,,,Instantiates specific objects in place of call do Any.ANY,,,,,,,,,,,, +Mockito,7,2,1,0,1,1,1,1,0,0,1,1,0,0,,,,,,,,,,x,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,x,,,x,,,,,,,,,,,Instantiates and initializes an TypeVariable vector.,,,,,,,,,,,, +Mockito,8,1,2,0,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,x,,,,,,,,,,,"Replaced and ""else"" with an ""else if""",,,,,,,,,,,, +Mockito,9,4,1,0,1,1,1,5,0,0,5,3,28,5,,,,,,,,,,x,,,,,,,,x,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,x,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,, +Mockito,10,7,0,0,1,4,1,5,0,5,10,7,81,36,x,,,x,,,,,,,,x,,x,,,,x,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,x,,,,,,,,,,,,x,,"Changes signature of existent methods, adding new params.",,,,,,,,,,,, +Mockito,11,7,2,0,1,2,1,8,0,1,9,3,5,4,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,x,x,,,,x,,,,,,,,,x,x,,,x,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,, +Mockito,12,3,1,0,1,1,1,4,0,0,4,3,2,1,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,x,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,, +Mockito,13,3,2,0,1,1,1,2,0,1,3,3,5,3,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,x,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,x,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,, +Mockito,14,4,2,0,2,2,2,4,0,1,5,5,109,80,,,,,,,,,,x,,,,,,x,,x,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,x,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,"An existing parameter (""mode"") was wrapped by a constructor call, instantiating MockAwareVerificationMode object",,,,,,,,,,,, +Mockito,15,3,1,0,1,1,1,3,0,0,3,3,22,11,,,,,,,,,,x,,,,,,,,x,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,Instantiated a BeanPropertySetter object,,,,,,,,,,,, +Mockito,16,5,1,0,2,3,2,2,1,3,6,5,73,6,,x,,,,,,,,,,x,,x,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,x,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,Merged two overloaded method definitions.,,,,,,,,,,,, +Mockito,17,6,2,0,2,3,2,7,0,2,9,6,80,61,,,,,,,,,,x,x,,,,,,,x,,,x,,,,,,,,,,,,,,,,,,x,,,,,,,,,x,,,,x,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,, +Mockito,18,3,1,0,1,1,1,2,0,0,2,1,0,0,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,x,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,Returns instantiated ArrayList,,,,,,,,,,,, +Mockito,19,11,2,0,5,5,5,18,0,8,26,11,41,20,x,,,x,,,,,,x,,x,,x,,,,x,,,,,,,,,,,,,,,,x,x,,,,,,,x,,,,,,x,x,,,,,,,,,,,,x,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Adds new parameter to existent method. Adjust code to reflect this.,,,,,,,,,,,, +Mockito,20,7,1,0,1,1,1,1,0,2,3,3,12,11,,,,,,,,,,x,,x,,,,,,x,,,x,,,,x,,,,,,,,,,,,,,x,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,x,,,,,,,,,Instantiates an InstantiatonProvider object,,,,,,,,,,,, +Mockito,21,14,2,0,1,3,1,16,0,4,20,5,15,10,x,,x,x,,,,x,,x,,x,,,,,,,,,x,,,,,,,,x,,,,,x,,,,,x,,,x,,,,,,x,x,x,,,,,,,,,,,x,x,,,,,,,,,,,,,,,,,x,,x,,,,,,,,,,,,,"Apply ""static"" modifier to withParams method",,,,,,,,,,,, +Mockito,22,2,1,0,1,1,1,2,0,1,3,1,0,0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,x,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,, +Mockito,23,11,2,0,1,5,2,15,0,3,18,8,77,48,x,,,,,,,,,x,,,,,,,,x,x,,,,x,x,,,,,,,,,,x,,,,,x,x,,,,,,x,,x,,,,,,,,,,,,,,x,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,Instantiates MockitoCore and ReturnsEmptyValues objects. Replaces instantiation of Answer to SerializabelAnswer object.,,,,,,,,,,,, +Mockito,24,3,2,0,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,x,,,,x,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,x,,,,,,,,,,,"If-Else implicit in ""exp?x:y"" format",,,,,,,,,,,, +Mockito,25,13,0,0,1,6,1,25,2,4,31,10,71,29,x,,,x,x,,,,x,x,x,x,,x,,x,,x,,,,x,,,,,,,,,,,,,,,,,,x,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,, +Mockito,26,1,2,0,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,x,,,,x,,,,x,,,,,,,,,,,,,,,,,,,,,,, +Mockito,27,5,0,0,1,1,1,0,1,1,2,1,0,0,,,,,,,,,,x,x,,,,,,,,x,,,x,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,x,,x,,,,,,,,,,,,,,,,,,,,,, +Mockito,28,3,2,0,1,1,1,1,0,1,2,1,0,0,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,x,,,,,,x,,,,x,,,,,,,,,,Changes method signature adding new parameter.,,,,,,,,,,,, +Mockito,29,1,3,2,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,x,,,,,,,,,x,,,,,,,,,x,,,,,,,,,,,"Wrapping implicit in ""exp?x:y"" format",,,X,,,,,,,,,X +Mockito,30,4,0,0,2,2,2,1,0,2,3,3,3,3,,,,x,,,,,,,,x,,x,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,x,,,x,,,,,,,,,"Adds new parameter to method signature, ajust code.",,,,,,,,,,,, +Mockito,31,4,0,0,1,1,1,2,0,1,3,2,51,25,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,x,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,x,,,,,x,,,,,,,,,,,,,,,,,,,,, +Mockito,32,2,1,0,1,1,1,4,0,1,5,2,30,25,,,,,,,,,,,,x,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,x,,,,,,,x,,,,,,,,,,,,,,,,,,, +Mockito,33,7,3,0,1,1,1,11,0,1,12,2,1,0,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,x,,,,,x,,,x,,,,,,,x,x,,,,,,,,,,,x,x,,,,x,,,,,,,,,,,,,x,,x,,,,,,,,,,,,,,,,,,,,,,,,, +Mockito,34,2,2,0,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,x,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,, +Mockito,35,3,2,0,1,3,1,0,0,3,3,3,152,31,,,,,,,,,,x,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,x,,,,,,,,,x,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,, +Mockito,36,3,1,0,1,1,1,4,0,0,4,2,191,146,,,,,,,,,,x,,,,,,,,x,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,Instantiates an Reporter object,,,,,,,,,,,, +Mockito,37,3,1,0,1,2,1,8,0,0,8,2,2,1,x,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,, +Mockito,38,1,3,2,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,x,,,,,,,,,x,,,,,,,,,x,,,,,,,,,,,,,,X,,,,,,,,,X +Time,1,7,4,0,2,2,2,9,3,1,13,3,4,4,,,,,,,,,,x,,,,,,,,x,,,,,,,,,,,x,,,x,,,x,,,x,,,,,,,,,,,,x,,,,,,,,,,x,,x,x,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, 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+Time,7,4,0,3,1,1,1,1,1,0,2,2,2,2,,,,,,,,,,,x,x,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,x,,,x,,x,,,,,,,,,,Move assignment of var and changed assignment expression.,,,X,,,X,,,,,,X +Time,8,6,5,0,1,1,1,3,0,2,5,3,6,6,,,,,,,,,,x,,,,,,,,x,,,,,,,,,,,x,,,,x,x,,,,,,,x,,,,,,,,,,,,,,x,,,,,x,,,,,,,,,x,x,,,,,x,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,, +Time,9,5,2,1,1,2,1,6,0,3,9,5,22,15,,,,,,,,,,,x,,,,,,,x,,,,,,,,,,,x,,,,,x,,,,,,,x,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,X,,,,,, +Time,10,3,1,0,1,1,1,1,0,1,2,2,52,25,,,,,,,,,,,,,,,,x,,,,,x,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,x,,x,,,,,,,,,,Adds new variable and its initialization.,,,,,,,,,,,, +Time,11,5,0,6,1,1,1,1,0,4,5,1,0,0,x,,,,,,,,x,,x,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,x,,,,,x,,,,,,,Changed a static initialization for a method inline implementation.,,X,X,X,,X,,,X,,,X +Time,12,8,3,2,2,2,2,12,0,2,14,8,70,26,,,,,,,,,,x,,,,,,x,,x,,,x,,,,,,,,,,,,,x,x,,,,x,,,,,,,,,,x,,,x,,,,,,,,,x,,,x,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,The if/else added is implicit in the passed parameter format (exp?x:y) for the LocalDate constructor call.,,,,,,,,,,,X,X +Time,13,6,3,0,1,1,1,4,0,1,5,3,43,37,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,x,x,,,,x,,x,,,,,,,,,,,x,,,,,,,,,,x,,,,,,,,x,,,,,,,,,,,x,,,,,,x,,,,,,,,,,,,,,,,,,, +Time,14,5,1,2,1,1,1,5,0,0,5,2,1,0,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,x,,,,,x,,,,,,,,,,x,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,x,,,,,,,x,,,,,,,,,,X,,,,,,,,,X +Time,15,3,1,2,1,1,1,3,0,0,3,1,0,0,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,x,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,X,,,,,,,,X,,, +Time,16,3,2,2,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,x,,,,,,x,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,x,,,,,,,,x,x,,,,,,,,,,,Changes parameter for constructor call.,,,X,,,,,,,,,X +Time,17,11,4,1,1,1,1,13,0,5,18,5,8,2,,,,,,,,,,x,x,,,,,,,,,,x,x,,,,,,,,,,,x,x,x,,,,x,,x,,,,,,,,x,x,,,,,,,,x,,,x,,,,,,,,x,x,,,,,,,,,x,x,,,,,,,,,,,,,,,,,,,,X,,,,,, +Time,18,5,2,2,1,1,1,12,0,0,12,2,3,3,,,,,,,,,,x,,,,,,,,,,,,,,,,,x,,x,,,,,x,,,,,x,,,,,,,,,,,,,,,x,,,,,,x,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,X,,,,,,X +Time,19,1,2,2,1,1,1,0,0,1,1,1,0,0,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,x,,,,,,,,,x,,,,,,,,,,,,,,,,,,,X,,,,X +Time,20,7,4,0,1,1,1,6,0,2,8,3,4,4,,,,,,,,,,x,x,,,,,,,,,,x,,,,,,,,,,,,,x,,,,,x,,,,,,,,,,x,x,,,,,,,,,,,x,x,,,x,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,, +Time,21,8,4,0,1,1,1,12,2,4,18,5,10,6,,,,,,,,,,x,x,,,,,x,,,,,x,,,,,,,,,,,,x,x,,,,,x,,,x,,,,,,,,,x,,,,,,,,,,,x,,,,x,,,,,,x,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,, +Time,22,4,0,0,1,1,1,5,0,1,6,2,1,0,,,,,,,,,,x,,x,,,,,,,,,x,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,x,,,x,,,,,,x,,,,,,,,,,,,,,,,,, +Time,23,3,1,0,1,1,1,5,4,4,13,8,17,17,,,,,,,,,,x,x,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,x,,,,,,,,,,,,Changes entries in a key-value map.,,,,,,,,,,,, +Time,24,4,1,0,1,1,1,5,0,0,5,1,0,0,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,x,,,x,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,x,,,,,,x,,,,,,,,,,,,,,,,,,, +Time,25,6,2,0,1,1,1,9,0,0,9,1,0,0,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,x,x,,,,x,,,,,,,,,,x,,,,,,,,,,,,x,x,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,x,,,,,,,,,,,,,,, +Time,26,3,2,0,1,7,1,0,0,7,7,7,98,84,,,,,,,,,,,,x,,x,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,x,,,,,,,,,x,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,, +Time,27,1,2,0,1,1,1,2,0,0,2,2,3,3,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,x,,,,,,,,,,,,,,,,,,,,,, diff --git a/python/data/defects4j-bugs.json b/python/data/defects4j-bugs.json new file mode 100644 index 0000000..6896a03 --- /dev/null +++ b/python/data/defects4j-bugs.json @@ -0,0 +1,27544 @@ +[ + { + "bugId": 6, + "changedFiles": { + "org/jfree/chart/util/ShapeList.java": { + "changes": [ + [ + 111 + ] + ] + } + }, + "diff": "--- a/source/org/jfree/chart/util/ShapeList.java\n+++ b/source/org/jfree/chart/util/ShapeList.java\n@@ -108,7 +108,14 @@ public boolean equals(Object obj) {\n if (!(obj instanceof ShapeList)) {\n return false;\n }\n- return super.equals(obj);\n+ ShapeList that = (ShapeList) obj;\n+ int listSize = size();\n+ for (int i = 0; i < listSize; i++) {\n+ if (!ShapeUtilities.equal((Shape) get(i), (Shape) that.get(i))) {\n+ return false;\n+ }\n+ }\n+ return true;\n \n }\n \n", + "failingTests": [ + { + "className": " org.jfree.chart.util.junit.ShapeListTests", + "error": "junit.framework.AssertionFailedError", + "message": "expected: but was:", + "methodName": "testSerialization" + }, + { + "className": " org.jfree.chart.util.junit.ShapeListTests", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testEquals" + } + ], + "metrics": { + "chunks": 1, + 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generateToolTipFragment(String toolTipText) {\r\n- return \" title=\\\"\" + toolTipText\r\n+ return \" title=\\\"\" + ImageMapUtilities.htmlEscape(toolTipText) \r\n + \"\\\" alt=\\\"\\\"\";\r\n }\r\n \r\n", + "failingTests": [ + { + "className": " org.jfree.chart.imagemap.junit.StandardToolTipTagFragmentGeneratorTests", + "error": "junit.framework.ComparisonFailure", + "message": "expected:< title=\"Series ["A"], 100.0\" alt=\"\"> but was:< title=\"Series [\"A\"], 100.0\" alt=\"\">", + "methodName": "testGenerateURLFragment" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "jfreechart", + "project": "Chart", + "repairActions": [ + "mcAdd", + "retExpChange" + ], + "repairPatterns": [ + "singleLine", + "wrapsMethod" + ], + "repairTools": [], + "revisionId": "1065" + }, + { + "bugId": 9, + "changedFiles": { + "org/jfree/data/time/TimeSeries.java": { + "changes": [ + [ + 944 + ] + ] + } + }, + "diff": "--- a/source/org/jfree/data/time/TimeSeries.java\n+++ b/source/org/jfree/data/time/TimeSeries.java\n@@ -941,7 +941,7 @@ public TimeSeries createCopy(RegularTimePeriod start, RegularTimePeriod end)\n endIndex = -(endIndex + 1); // this is first item AFTER end period\r\n endIndex = endIndex - 1; // so this is last item BEFORE end\r\n }\r\n- if (endIndex < 0) {\r\n+ if ((endIndex < 0) || (endIndex < startIndex)) {\r\n emptyRange = true;\r\n }\r\n if (emptyRange) {\r\n", + "failingTests": [ + { + "className": " org.jfree.data.time.junit.TimeSeriesTests", + "error": "java.lang.IllegalArgumentException", + "message": "Requires start <= end.", + "methodName": "testBug1864222" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + 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getDataItem(this.minMiddleIndex).getPeriod().getStart()\r\n+ long s = getDataItem(this.maxMiddleIndex).getPeriod().getStart()\r\n .getTime();\r\n- long e = getDataItem(this.minMiddleIndex).getPeriod().getEnd()\r\n+ long e = getDataItem(this.maxMiddleIndex).getPeriod().getEnd()\r\n .getTime();\r\n long maxMiddle = s + (e - s) / 2;\r\n if (middle > maxMiddle) {\r\n", + "failingTests": [ + { + "className": " org.jfree.data.time.junit.TimePeriodValuesTests", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<1> but was:<3>", + "methodName": "testGetMaxMiddleIndex" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 2, + "linesRem": 0, + "methods": 1, + "sizeInLines": 2, + "spreadAllLines": 1, + "spreadCodeOnly": 1 + }, + "observations": "", + "program": "jfreechart", + "project": "Chart", + "repairActions": [ + "assignExpChange", + "mcParValChange", + "varReplVar" + ], + "repairPatterns": [ + "copyPaste", + 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existing.clone();\r\n", + "failingTests": [ + { + "className": " org.jfree.data.xy.junit.XYSeriesTests", + "error": "java.lang.IndexOutOfBoundsException", + "message": "Index: -1, Size: 1", + "methodName": "testBug1955483" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 4, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 5, + "spreadAllLines": 4, + "spreadCodeOnly": 2 + }, + "observations": "", + "program": "jfreechart", + "project": "Chart", + "repairActions": [ + "condBranIfAdd", + "condExpRed", + "mcAdd", + "retBranchAdd" + ], + "repairPatterns": [ + "condBlockRetAdd", + "expLogicReduce" + ], + "repairTools": [ + "rtCardumen", + "rtDeepRepair", + "rtDynaMoth", + "rtGPFL", + "rtGenProg", + "rtKali", + "rtNopol" + ], + "revisionId": "1696" + }, + { + "bugId": 3, + "changedFiles": { + "org/jfree/data/time/TimeSeries.java": { + "inserts": [ + [ + 1057, + 1058 + ] + ] + } + }, + "diff": "--- a/source/org/jfree/data/time/TimeSeries.java\n+++ b/source/org/jfree/data/time/TimeSeries.java\n@@ -1054,6 +1054,8 @@ public TimeSeries createCopy(int start, int end)\n throw new IllegalArgumentException(\"Requires start <= end.\");\r\n }\r\n TimeSeries copy = (TimeSeries) super.clone();\r\n+ copy.minY = Double.NaN;\r\n+ copy.maxY = Double.NaN;\r\n copy.data = new java.util.ArrayList();\r\n if (this.data.size() > 0) {\r\n for (int index = start; index <= end; index++) {\r\n", + "failingTests": [ + { + "className": " org.jfree.data.time.junit.TimeSeriesTests", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<101.0> but was:<102.0>", + "methodName": "testCreateCopy3" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 2, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 2, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Missing initialization", + "program": "jfreechart", + "project": "Chart", + "repairActions": [ + "assignAdd" + ], + "repairPatterns": [ + "initFix", + "notClassified" + ], + "repairTools": [ + "rtCardumen", + "rtDeepRepair", + "rtElixir", + "rtGPFL", + "rtGenProg", + "rtNopol" + ], + "revisionId": "2227" + }, + { + "bugId": 4, + "changedFiles": { + "org/jfree/chart/plot/XYPlot.java": { + "inserts": [ + [ + 4492, + 4493 + ], + [ + 4501 + ] + ] + } + }, + "diff": "--- a/source/org/jfree/chart/plot/XYPlot.java\n+++ b/source/org/jfree/chart/plot/XYPlot.java\n@@ -4490,6 +4490,7 @@ public Range getDataRange(ValueAxis axis) {\n }\r\n }\r\n \r\n+ if (r != null) {\r\n Collection c = r.getAnnotations();\r\n Iterator i = c.iterator();\r\n while (i.hasNext()) {\r\n@@ -4498,6 +4499,7 @@ public Range getDataRange(ValueAxis axis) {\n includedAnnotations.add(a);\r\n }\r\n }\r\n+ }\r\n }\r\n }\r\n \r\n", + "failingTests": [ + { + "className": " org.jfree.chart.axis.junit.LogAxisTests", + "error": "java.lang.NullPointerException", + "message": "", + "methodName": 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[ + "rtCardumen", + "rtDynaMoth", + "rtNopol" + ], + "revisionId": "2183" + }, + { + "bugId": 2, + "changedFiles": { + "org/jfree/data/general/DatasetUtilities.java": { + "inserts": [ + [ + 755, + 756, + 757 + ], + [ + 758, + 759 + ], + [ + 761, + 762 + ], + [ + 1242, + 1243, + 1244 + ], + [ + 1245, + 1246 + ], + [ + 1248, + 1249 + ] + ] + } + }, + "diff": "--- a/source/org/jfree/data/general/DatasetUtilities.java\n+++ b/source/org/jfree/data/general/DatasetUtilities.java\n@@ -752,12 +752,19 @@ public static Range iterateDomainBounds(XYDataset dataset,\n for (int series = 0; series < seriesCount; series++) {\r\n int itemCount = dataset.getItemCount(series);\r\n for (int item = 0; item < itemCount; item++) {\r\n+ double value = intervalXYData.getXValue(series, item);\r\n lvalue = intervalXYData.getStartXValue(series, item);\r\n uvalue = intervalXYData.getEndXValue(series, item);\r\n+ if (!Double.isNaN(value)) {\r\n+ minimum = Math.min(minimum, value);\r\n+ maximum = Math.max(maximum, value);\r\n+ }\r\n if (!Double.isNaN(lvalue)) {\r\n minimum = Math.min(minimum, lvalue);\r\n+ maximum = Math.max(maximum, lvalue);\r\n }\r\n if (!Double.isNaN(uvalue)) {\r\n+ minimum = Math.min(minimum, uvalue);\r\n maximum = Math.max(maximum, uvalue);\r\n }\r\n }\r\n@@ -1239,12 +1246,19 @@ public static Range iterateRangeBounds(XYDataset dataset,\n for (int series = 0; series < seriesCount; series++) {\r\n int itemCount = dataset.getItemCount(series);\r\n for (int item = 0; item < itemCount; item++) {\r\n+ double value = ixyd.getYValue(series, item);\r\n double lvalue = ixyd.getStartYValue(series, item);\r\n double uvalue = ixyd.getEndYValue(series, item);\r\n+ if (!Double.isNaN(value)) {\r\n+ minimum = Math.min(minimum, value);\r\n+ maximum = Math.max(maximum, value);\r\n+ }\r\n if (!Double.isNaN(lvalue)) {\r\n minimum = Math.min(minimum, lvalue);\r\n+ maximum = Math.max(maximum, lvalue);\r\n }\r\n if (!Double.isNaN(uvalue)) {\r\n+ minimum = Math.min(minimum, uvalue);\r\n maximum = Math.max(maximum, uvalue);\r\n }\r\n }\r\n", + "failingTests": [ + { + "className": " org.jfree.data.general.junit.DatasetUtilitiesTests", + "error": "java.lang.NullPointerException", + "message": "", + "methodName": "testBug2849731_2" + }, + { + "className": " org.jfree.data.general.junit.DatasetUtilitiesTests", + "error": "java.lang.NullPointerException", + "message": "", + "methodName": "testBug2849731_3" + } + ], + "metrics": { + "chunks": 8, + "classes": 1, + "files": 1, + "linesAdd": 14, + "linesMod": 0, + "linesRem": 0, + "methods": 2, + "sizeInLines": 14, + "spreadAllLines": 493, + "spreadCodeOnly": 318 + }, + "observations": "", + "program": "jfreechart", + "project": "Chart", + "repairActions": [ + "assignAdd", + "condBranIfAdd", + "mcAdd", + "varAdd" + ], + "repairPatterns": [ + "condBlockOthersAdd", + "copyPaste", + "missComp" + ], + "repairTools": [], + "revisionId": "2242" + }, + { + "bugId": 1, + "changedFiles": { + "org/jfree/chart/renderer/category/AbstractCategoryItemRenderer.java": { + "changes": [ + [ + 1797 + ] + ] + } + }, + "diff": "--- a/source/org/jfree/chart/renderer/category/AbstractCategoryItemRenderer.java\n+++ b/source/org/jfree/chart/renderer/category/AbstractCategoryItemRenderer.java\n@@ -1794,7 +1794,7 @@ public LegendItemCollection getLegendItems() {\n }\r\n int index = this.plot.getIndexOf(this);\r\n CategoryDataset dataset = this.plot.getDataset(index);\r\n- if (dataset != null) {\r\n+ if (dataset == null) {\r\n return result;\r\n }\r\n int seriesCount = dataset.getRowCount();\r\n", + "failingTests": [ + { + "className": " org.jfree.chart.renderer.category.junit.AbstractCategoryItemRendererTests", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<1> but was:<0>", + "methodName": "test2947660" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Change Operator", + "program": "jfreechart", + "project": "Chart", + "repairActions": [ + "condExpMod" + ], + "repairPatterns": [ + "expLogicMod", + "singleLine" + ], + "repairTools": [ + "rtCardumen", + "rtDeepRepair", + "rtDynaMoth", + "rtGPFL", + "rtGenProg", + "rtJAID", + "rtKali" + ], + "revisionId": "2266" + }, + { + "bugId": 12, + "changedFiles": { + "org/jfree/chart/plot/MultiplePiePlot.java": { + "changes": [ + [ + 145 + ] + ] + } + }, + "diff": "--- a/source/org/jfree/chart/plot/MultiplePiePlot.java\n+++ b/source/org/jfree/chart/plot/MultiplePiePlot.java\n@@ -142,7 +142,7 @@ public MultiplePiePlot() {\n */\r\n public MultiplePiePlot(CategoryDataset dataset) {\r\n super();\r\n- this.dataset = dataset;\r\n+ setDataset(dataset);\r\n PiePlot piePlot = new PiePlot(null);\r\n this.pieChart = new JFreeChart(piePlot);\r\n this.pieChart.removeLegend();\r\n", + "failingTests": [ + { + "className": " org.jfree.chart.plot.junit.MultiplePiePlotTests", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testConstructor" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "It involves a \"wrap with method\", but the real change is converting from a class attribute assignment to a \"set\" method call.", + "program": "jfreechart", + "project": "Chart", + "repairActions": [ + "assignRem", + "mcAdd", + "varReplMc" + ], + "repairPatterns": [ + "singleLine", + "wrapsMethod", + "wrongVarRef" + ], + "repairTools": [ + "rtCardumen", + "rtDeepRepair", + "rtGPFL" + ], + "revisionId": "852" + }, + { + "bugId": 11, + "changedFiles": { + "org/jfree/chart/util/ShapeUtilities.java": { + "changes": [ + [ + 275 + ] + ] + } + }, + "diff": "--- a/source/org/jfree/chart/util/ShapeUtilities.java\n+++ b/source/org/jfree/chart/util/ShapeUtilities.java\n@@ -272,7 +272,7 @@ public static boolean equal(GeneralPath p1, GeneralPath p2) {\n return false;\n }\n PathIterator iterator1 = p1.getPathIterator(null);\n- PathIterator iterator2 = p1.getPathIterator(null);\n+ PathIterator iterator2 = p2.getPathIterator(null);\n double[] d1 = new double[6];\n double[] d2 = new double[6];\n boolean done = iterator1.isDone() && iterator2.isDone();\n", + "failingTests": [ + { + "className": " org.jfree.chart.util.junit.ShapeUtilitiesTests", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testEqualGeneralPaths" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Replaces var referencing of target object of a call.", + "program": "jfreechart", + "project": "Chart", + "repairActions": [ + "assignExpChange", + "varReplVar" + ], + "repairPatterns": [ + "singleLine", + "wrongComp", + "wrongVarRef" + ], + "repairTools": [ + "rtCardumen", + "rtElixir" + ], + "revisionId": "1025" + }, + { + "bugId": 13, + "changedFiles": { + "org/jfree/chart/block/BorderArrangement.java": { + "changes": [ + [ + 455 + ] + ] + } + }, + "diff": "--- a/source/org/jfree/chart/block/BorderArrangement.java\n+++ b/source/org/jfree/chart/block/BorderArrangement.java\n@@ -452,7 +452,7 @@ protected Size2D arrangeFF(BlockContainer container, Graphics2D g2,\n h[3] = h[2];\r\n if (this.rightBlock != null) {\r\n RectangleConstraint c4 = new RectangleConstraint(0.0,\r\n- new Range(0.0, constraint.getWidth() - w[2]),\r\n+ new Range(0.0, Math.max(constraint.getWidth() - w[2], 0.0)),\r\n LengthConstraintType.RANGE, h[2], null,\r\n LengthConstraintType.FIXED);\r\n Size2D size = this.rightBlock.arrange(g2, c4);\r\n", + "failingTests": [ + { + "className": " org.jfree.chart.block.junit.BorderArrangementTests", + "error": "java.lang.IllegalArgumentException", + "message": "Range(double, double): require lower (0.0) <= upper (-2.3000000000000007).", + "methodName": "testSizingWithWidthConstraint" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "jfreechart", + "project": "Chart", + "repairActions": [ + "assignExpChange", + "mcAdd", + "mcParAdd", + "mcParValChange", + "mcRepl", + "objInstMod" + ], + "repairPatterns": [ + "initFix", + "missComp", + "singleLine", + "wrapsMethod", + "wrongMethodRef" + ], + "repairTools": [ + "rtCardumen", + "rtDeepRepair", + "rtDynaMoth", + "rtElixir", + "rtGPFL", + "rtGenProg", + "rtKali" + ], + "revisionId": "822" + }, + { + "bugId": 18, + "changedFiles": { + "org/jfree/data/DefaultKeyedValues.java": { + "changes": [ + [ + 335 + ] + ], + "deletes": [ + [ + 318 + ], + [ + 320 + ] + ] + }, + "org/jfree/data/DefaultKeyedValues2D.java": { + "inserts": [ + [ + 455, + 456 + ], + [ + 458 + ], + [ + 459 + ] + ] + } + }, + "diff": "--- a/source/org/jfree/data/DefaultKeyedValues.java\n+++ b/source/org/jfree/data/DefaultKeyedValues.java\n@@ -315,30 +315,29 @@ private void rebuildIndex () {\n public void removeValue(int index) {\n this.keys.remove(index);\n this.values.remove(index);\n- if (index < this.keys.size()) {\n rebuildIndex();\n- }\n }\n \n /**\n * Removes a value from the collection.\n *\n * @param key the item key (null not permitted).\n * \n * @throws IllegalArgumentException if key is \n * null.\n * @throws UnknownKeyException if key is not recognised.\n */\n public void removeValue(Comparable key) {\n int index = getIndex(key);\n if (index < 0) {\n-\t\t\treturn;\n+ throw new UnknownKeyException(\"The key (\" + key \n+ + \") is not recognised.\");\n }\n removeValue(index);\n }\n \n /**\n * Clears all values from the collection.\n * \n * @since 1.0.2\n */\n--- a/source/org/jfree/data/DefaultKeyedValues2D.java\n+++ b/source/org/jfree/data/DefaultKeyedValues2D.java\n@@ -454,12 +454,21 @@ public void removeColumn(int columnIndex) {\n public void removeColumn(Comparable columnKey) {\r\n+ \tif (columnKey == null) {\r\n+ \t\tthrow new IllegalArgumentException(\"Null 'columnKey' argument.\");\r\n+ \t}\r\n+ \tif (!this.columnKeys.contains(columnKey)) {\r\n+ \t\tthrow new UnknownKeyException(\"Unknown key: \" + columnKey);\r\n+ \t}\r\n Iterator iterator = this.rows.iterator();\r\n while (iterator.hasNext()) {\r\n DefaultKeyedValues rowData = (DefaultKeyedValues) iterator.next();\r\n+ int index = rowData.getIndex(columnKey);\r\n+ if (index >= 0) {\r\n rowData.removeValue(columnKey);\r\n+ }\r\n }\r\n this.columnKeys.remove(columnKey);\r\n }\r\n \r\n /**\r\n * Clears all the data and associated keys.\r\n */\r\n", + "failingTests": [ + { + "className": " org.jfree.data.category.junit.DefaultCategoryDatasetTests", + "error": 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"repairActions": [ + "assignAdd", + "condBranIfAdd", + "condBranRem", + "exThrowsAdd", + "mcAdd", + "mcRem", + "objInstAdd", + "retRem", + "varAdd" + ], + "repairPatterns": [ + "condBlockExcAdd", + "missNullCheckP", + "unwrapIfElse", + "wrapsIf" + ], + "repairTools": [ + "rtDeepRepair", + "rtGPFL" + ], + "revisionId": "621" + }, + { + "bugId": 14, + "changedFiles": { + "org/jfree/chart/plot/CategoryPlot.java": { + "inserts": [ + [ + 2166 + ], + [ + 2448 + ] + ] + }, + "org/jfree/chart/plot/XYPlot.java": { + "inserts": [ + [ + 2293 + ], + [ + 2529 + ] + ] + } + }, + "diff": "--- a/source/org/jfree/chart/plot/CategoryPlot.java\n+++ b/source/org/jfree/chart/plot/CategoryPlot.java\n@@ -2163,6 +2163,9 @@ public boolean removeDomainMarker(int index, Marker marker, Layer layer,\n markers = (ArrayList) this.backgroundDomainMarkers.get(new Integer(\r\n index));\r\n }\r\n+ if (markers == null) {\r\n+ return false;\r\n+ }\r\n boolean removed = markers.remove(marker);\r\n if (removed && notify) {\r\n fireChangeEvent();\r\n@@ -2445,6 +2448,9 @@ public boolean removeRangeMarker(int index, Marker marker, Layer layer,\n markers = (ArrayList) this.backgroundRangeMarkers.get(new Integer(\r\n index));\r\n }\r\n+ if (markers == null) {\r\n+ return false;\r\n+ }\r\n boolean removed = markers.remove(marker);\r\n if (removed && notify) {\r\n fireChangeEvent();\r\n--- a/source/org/jfree/chart/plot/XYPlot.java\n+++ b/source/org/jfree/chart/plot/XYPlot.java\n@@ -2290,6 +2290,9 @@ public boolean removeDomainMarker(int index, Marker marker, Layer layer,\n markers = (ArrayList) this.backgroundDomainMarkers.get(new Integer(\r\n index));\r\n }\r\n+ if (markers == null) {\r\n+ return false;\r\n+ }\r\n boolean removed = markers.remove(marker);\r\n if (removed && notify) {\r\n fireChangeEvent();\r\n@@ -2526,6 +2529,9 @@ public boolean removeRangeMarker(int index, Marker marker, Layer layer,\n markers = (ArrayList) this.backgroundRangeMarkers.get(new Integer(\r\n index));\r\n }\r\n+ if (markers == null) {\r\n+ return false;\r\n+ }\r\n boolean removed = markers.remove(marker);\r\n if (removed && notify) {\r\n fireChangeEvent();\r\n", + "failingTests": [ + { + "className": " org.jfree.chart.plot.junit.CategoryPlotTests", + "error": "java.lang.NullPointerException", + "message": "", + "methodName": "testRemoveRangeMarker" + }, + { + "className": " org.jfree.chart.plot.junit.CategoryPlotTests", + "error": "java.lang.NullPointerException", + "message": "", + "methodName": "testRemoveDomainMarker" + }, + { + "className": " org.jfree.chart.plot.junit.XYPlotTests", + "error": "java.lang.NullPointerException", + "message": "", + "methodName": "testRemoveRangeMarker" + }, + { + "className": " org.jfree.chart.plot.junit.XYPlotTests", + "error": "java.lang.NullPointerException", + "message": "", + "methodName": "testRemoveDomainMarker" + } + ], + "metrics": { + "chunks": 4, + "classes": 2, + "files": 2, + "linesAdd": 12, + "linesMod": 0, + "linesRem": 0, + "methods": 4, + "sizeInLines": 12, + "spreadAllLines": 518, + "spreadCodeOnly": 243 + }, + "observations": "", + "program": "jfreechart", + "project": "Chart", + "repairActions": [ + "condBranIfAdd", + "retBranchAdd" + ], + "repairPatterns": [ + "condBlockRetAdd", + "copyPaste", + "missNullCheckP" + ], + "repairTools": [ + "rtAcs", + "rtDeepRepair" + ], + "revisionId": "811" + }, + { + "bugId": 21, + "changedFiles": { + "org/jfree/data/statistics/DefaultBoxAndWhiskerCategoryDataset.java": { + "inserts": [ + [ + 157, + 158 + ], + [ + 188, + 189 + ], + [ + 742 + ] + ] + } + }, + "diff": "--- a/source/org/jfree/data/statistics/DefaultBoxAndWhiskerCategoryDataset.java\n+++ b/source/org/jfree/data/statistics/DefaultBoxAndWhiskerCategoryDataset.java\n@@ -154,6 +154,7 @@ public void add(BoxAndWhiskerItem item, Comparable rowKey,\n && this.minimumRangeValueColumn == c)) {\r\n updateBounds();\r\n }\r\n+ else {\r\n \r\n double minval = Double.NaN;\r\n if (item.getMinOutlier() != null) {\r\n@@ -185,6 +186,7 @@ else if (minval < this.minimumRangeValue) {\n this.minimumRangeValueRow = r;\r\n this.minimumRangeValueColumn = c;\r\n }\r\n+ }\r\n \r\n this.rangeBounds = new Range(this.minimumRangeValue,\r\n this.maximumRangeValue);\r\n@@ -738,7 +740,44 @@ public List getOutliers(Comparable rowKey, Comparable columnKey) {\n */\r\n private void updateBounds() {\r\n this.minimumRangeValue = Double.NaN;\r\n+ this.minimumRangeValueRow = -1;\r\n+ this.minimumRangeValueColumn = -1;\r\n this.maximumRangeValue = Double.NaN;\r\n+ this.maximumRangeValueRow = -1;\r\n+ this.maximumRangeValueColumn = -1;\r\n+ int rowCount = getRowCount();\r\n+ int columnCount = getColumnCount();\r\n+ for (int r = 0; r < rowCount; r++) {\r\n+ for (int c = 0; c < columnCount; c++) {\r\n+ BoxAndWhiskerItem item = getItem(r, c);\r\n+ if (item != null) {\r\n+ Number min = item.getMinOutlier();\r\n+ if (min != null) {\r\n+ double minv = min.doubleValue();\r\n+ if (!Double.isNaN(minv)) {\r\n+ if (minv < this.minimumRangeValue || Double.isNaN(\r\n+ this.minimumRangeValue)) {\r\n+ this.minimumRangeValue = minv;\r\n+ this.minimumRangeValueRow = r;\r\n+ this.minimumRangeValueColumn = c;\r\n+ }\r\n+ }\r\n+ }\r\n+ Number max = item.getMaxOutlier();\r\n+ if (max != null) {\r\n+ double maxv = max.doubleValue();\r\n+ if (!Double.isNaN(maxv)) {\r\n+ if (maxv > this.maximumRangeValue || Double.isNaN(\r\n+ this.maximumRangeValue)) {\r\n+ this.maximumRangeValue = maxv;\r\n+ this.maximumRangeValueRow = r;\r\n+ this.maximumRangeValueColumn = c;\r\n+ }\r\n+ }\r\n+ }\r\n+ }\r\n+ }\r\n+ }\r\n }\r\n \r\n /**\r\n", + "failingTests": [ + { + "className": " org.jfree.data.statistics.junit.DefaultBoxAndWhiskerCategoryDatasetTests", + "error": "junit.framework.AssertionFailedError", + "message": "expected: but was:", + "methodName": "testGetRangeBounds" + } + ], + "metrics": { + "chunks": 4, + "classes": 1, + "files": 1, + "linesAdd": 39, + "linesMod": 0, + "linesRem": 0, + "methods": 2, + "sizeInLines": 39, + "spreadAllLines": 585, + "spreadCodeOnly": 239 + }, + "observations": "It seems that the functionality wasn't implemented before.", + "program": "jfreechart", + "project": "Chart", + "repairActions": [ + "assignAdd", + "condBranElseAdd", + "condBranIfAdd", + "loopAdd", + "mcAdd", + "varAdd" + ], + "repairPatterns": [ + "condBlockOthersAdd", + "missComp", + "wrapsElse" + ], + "repairTools": [ + "rtNopol" + ], + "revisionId": "231" + }, + { + "bugId": 15, + "changedFiles": { + "org/jfree/chart/plot/PiePlot.java": { + "inserts": [ + [ + 1378, + 1379 + ], + [ + 2051 + ], + [ + 2053 + ] + ] + } + }, + "diff": "--- a/source/org/jfree/chart/plot/PiePlot.java\n+++ b/source/org/jfree/chart/plot/PiePlot.java\n@@ -1375,6 +1375,9 @@ public void setExplodePercent(Comparable key, double percent) {\n * @return The percent.\r\n */\r\n public double getMaximumExplodePercent() {\r\n+ if (this.dataset == null) {\r\n+ return 0.0;\r\n+ }\r\n double result = 0.0;\r\n Iterator iterator = this.dataset.getKeys().iterator();\r\n while (iterator.hasNext()) {\r\n@@ -2048,8 +2051,10 @@ public PiePlotState initialise(Graphics2D g2, Rectangle2D plotArea,\n \r\n PiePlotState state = new PiePlotState(info);\r\n state.setPassesRequired(2);\r\n+ if (this.dataset != null) {\r\n state.setTotal(DatasetUtilities.calculatePieDatasetTotal(\r\n plot.getDataset()));\r\n+ }\r\n state.setLatestAngle(plot.getStartAngle());\r\n return state;\r\n \r\n", + "failingTests": [ + { + "className": " org.jfree.chart.plot.junit.PiePlot3DTests", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testDrawWithNullDataset" + } + ], + "metrics": { + "chunks": 3, + "classes": 1, + "files": 1, + "linesAdd": 5, + "linesMod": 0, + "linesRem": 0, + "methods": 2, + "sizeInLines": 5, + "spreadAllLines": 675, + "spreadCodeOnly": 212 + }, + "observations": "", + "program": "jfreechart", + "project": "Chart", + "repairActions": [ + "condBranIfAdd", + "retBranchAdd" + ], + "repairPatterns": [ + "condBlockRetAdd", + "missNullCheckN", + "missNullCheckP", + "wrapsIf" + ], + "repairTools": [ + "rtCardumen", + "rtDeepRepair", + "rtDynaMoth", + "rtGPFL", + "rtGenProg", + "rtKali" + ], + "revisionId": "749" + }, + { + "bugId": 16, + "changedFiles": { + "org/jfree/data/category/DefaultIntervalCategoryDataset.java": { + "changes": [ + [ + 207 + ], + [ + 208 + ], + [ + 338 + ] + ] + } + }, + "diff": "--- a/source/org/jfree/data/category/DefaultIntervalCategoryDataset.java\n+++ b/source/org/jfree/data/category/DefaultIntervalCategoryDataset.java\n@@ -204,8 +204,8 @@ public DefaultIntervalCategoryDataset(Comparable[] seriesKeys,\n \r\n }\r\n else {\r\n- this.seriesKeys = null;\r\n- this.categoryKeys = null;\r\n+ this.seriesKeys = new Comparable[0];\r\n+ this.categoryKeys = new Comparable[0];\r\n }\r\n }\r\n \r\n@@ -335,7 +335,7 @@ public void setCategoryKeys(Comparable[] categoryKeys) {\n if (categoryKeys == null) {\r\n throw new IllegalArgumentException(\"Null 'categoryKeys' argument.\");\r\n }\r\n- if (categoryKeys.length != this.startData[0].length) {\r\n+ if (categoryKeys.length != getCategoryCount()) {\r\n throw new IllegalArgumentException(\r\n \"The number of categories does not match the data.\");\r\n }\r\n", + "failingTests": [ + { + "className": " org.jfree.data.category.junit.DefaultIntervalCategoryDatasetTests", + "error": "java.lang.NullPointerException", + "message": "", + "methodName": "testGetCategoryIndex" + }, + { + "className": " org.jfree.data.category.junit.DefaultIntervalCategoryDatasetTests", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testSetCategoryKeys" + }, + { + "className": " org.jfree.data.category.junit.DefaultIntervalCategoryDatasetTests", + "error": "java.lang.NullPointerException", + "message": "", + "methodName": "testGetSeriesIndex" + }, + { + "className": " org.jfree.data.category.junit.DefaultIntervalCategoryDatasetTests", + "error": "java.lang.NullPointerException", + "message": "", + "methodName": "testGetRowCount" + }, + { + "className": " org.jfree.data.category.junit.DefaultIntervalCategoryDatasetTests", + "error": "java.lang.NullPointerException", + "message": "", + "methodName": "testGetRowIndex" + }, + { + "className": " org.jfree.data.category.junit.DefaultIntervalCategoryDatasetTests", + "error": "java.lang.NullPointerException", + "message": "", + "methodName": "testGetColumnCount" + }, + { + "className": " org.jfree.data.category.junit.DefaultIntervalCategoryDatasetTests", + "error": "java.lang.NullPointerException", + "message": "", + "methodName": "testGetColumnIndex" + }, + { + "className": " org.jfree.data.category.junit.DefaultIntervalCategoryDatasetTests", + "error": "java.lang.NullPointerException", + "message": "", + "methodName": "testCloning2" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 3, + "linesRem": 0, + "methods": 2, + "sizeInLines": 3, + "spreadAllLines": 129, + "spreadCodeOnly": 59 + }, + "observations": "Variable initialization in constructor + conditional expression change.", + "program": "jfreechart", + "project": "Chart", + "repairActions": [ + "assignExpChange", + "condExpMod", + "mcAdd", + "objInstAdd", + "varReplMc" + ], + "repairPatterns": [ + "expLogicMod", + "initFix", + "wrongVarRef" + ], + "repairTools": [], + "revisionId": "743" + }, + { + "bugId": 17, + "changedFiles": { + "org/jfree/data/time/TimeSeries.java": { + "changes": [ + [ + 857 + ] + ] + } + }, + "diff": "--- a/source/org/jfree/data/time/TimeSeries.java\n+++ b/source/org/jfree/data/time/TimeSeries.java\n@@ -854,7 +854,8 @@ public void delete(int start, int end) {\n * subclasses may differ.\r\n */\r\n public Object clone() throws CloneNotSupportedException {\r\n- Object clone = createCopy(0, getItemCount() - 1);\r\n+ TimeSeries clone = (TimeSeries) super.clone();\r\n+ clone.data = (List) ObjectUtilities.deepClone(this.data);\r\n return clone;\r\n }\r\n \r\n", + "failingTests": [ + { + "className": " org.jfree.data.time.junit.TimeSeriesTests", + "error": "java.lang.IllegalArgumentException", + "message": "Requires start <= end.", + "methodName": "testBug1832432" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 1, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 2, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Type change + computing change.", + "program": "jfreechart", + "project": "Chart", + "repairActions": [ + "assignAdd", + "assignExpChange", + "mcAdd", + "mcRem", + "varTyChange" + ], + "repairPatterns": [ + "notClassified", + "wrongComp" + ], + "repairTools": [ + "rtCardumen", + "rtDynaMoth", + "rtElixir", + "rtNopol" + ], + "revisionId": "622" + }, + { + "bugId": 20, + "changedFiles": { + "org/jfree/chart/plot/ValueMarker.java": { + "changes": [ + [ + 95 + ] + ] + } + }, + "diff": "--- a/source/org/jfree/chart/plot/ValueMarker.java\n+++ b/source/org/jfree/chart/plot/ValueMarker.java\n@@ -92,7 +92,7 @@ public ValueMarker(double value, Paint paint, Stroke stroke) {\n */\r\n public ValueMarker(double value, Paint paint, Stroke stroke, \r\n Paint outlinePaint, Stroke outlineStroke, float alpha) {\r\n- super(paint, stroke, paint, stroke, alpha);\r\n+ super(paint, stroke, outlinePaint, outlineStroke, alpha);\r\n this.value = value;\r\n }\r\n \r\n", + "failingTests": [ + { + "className": " org.jfree.chart.plot.junit.ValueMarkerTests", + "error": "junit.framework.AssertionFailedError", + "message": "expected: but was:", + "methodName": "test1808376" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Replaces params value passed to constructor.", + "program": "jfreechart", + "project": "Chart", + "repairActions": [ + "mcParValChange", + "varReplVar" + ], + "repairPatterns": [ + "initFix", + "singleLine", + "wrongVarRef" + ], + "repairTools": [ + "rtssFix" + ], + "revisionId": "283" + }, + { + "bugId": 19, + "changedFiles": { + "org/jfree/chart/plot/CategoryPlot.java": { + "inserts": [ + [ + 698 + ], + [ + 973 + ] + ] + } + }, + "diff": "--- a/source/org/jfree/chart/plot/CategoryPlot.java\n+++ b/source/org/jfree/chart/plot/CategoryPlot.java\n@@ -695,6 +695,9 @@ public void setDomainAxes(CategoryAxis[] axes) {\n * @since 1.0.3\r\n */\r\n public int getDomainAxisIndex(CategoryAxis axis) {\r\n+ if (axis == null) {\r\n+ throw new IllegalArgumentException(\"Null 'axis' argument.\");\r\n+ }\r\n return this.domainAxes.indexOf(axis);\r\n }\r\n \r\n@@ -970,6 +973,9 @@ public void setRangeAxes(ValueAxis[] axes) {\n * @since 1.0.7\r\n */\r\n public int getRangeAxisIndex(ValueAxis axis) {\r\n+ if (axis == null) {\r\n+ throw new IllegalArgumentException(\"Null 'axis' argument.\");\r\n+ }\r\n int result = this.rangeAxes.indexOf(axis);\r\n if (result < 0) { // try the parent plot\r\n Plot parent = getParent();\r\n", + "failingTests": [ + { + "className": " org.jfree.chart.plot.junit.CategoryPlotTests", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testGetRangeAxisIndex" + }, + { + "className": " org.jfree.chart.plot.junit.CategoryPlotTests", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testGetDomainAxisIndex" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 6, + "linesMod": 0, + "linesRem": 0, + "methods": 2, + "sizeInLines": 6, + "spreadAllLines": 275, + "spreadCodeOnly": 117 + }, + "observations": "", + "program": "jfreechart", + "project": "Chart", + "repairActions": [ + "condBranIfAdd", + "exThrowsAdd", + "objInstAdd" + ], + "repairPatterns": [ + "condBlockExcAdd", + "copyPaste", + "missNullCheckP" + ], + "repairTools": [ + "rtAcs" + ], + "revisionId": "434" + }, + { + "bugId": 22, + "changedFiles": { + "org/jfree/data/KeyedObjects2D.java": { + "changes": [ + [ + 233 + ], + [ + 378 + ] + ], + "deletes": [ + [ + 231 + ] + ], + "inserts": [ + [ + 233 + ], + [ + 316, + 317, + 318, + 319, + 320 + ], + [ + 345 + ], + [ + 378 + ], + [ + 379 + ] + ] + } + }, + "diff": "--- a/source/org/jfree/data/KeyedObjects2D.java\n+++ b/source/org/jfree/data/KeyedObjects2D.java\n@@ -228,9 +228,10 @@ public Object getObject(Comparable rowKey, Comparable columnKey) {\n throw new UnknownKeyException(\"Column key (\" + columnKey \r\n + \") not recognised.\");\r\n }\r\n- if (row >= 0) {\r\n KeyedObjects rowData = (KeyedObjects) this.rows.get(row);\r\n- return rowData.getObject(columnKey);\r\n+ int index = rowData.getIndex(columnKey);\r\n+ if (index >= 0) {\r\n+ return rowData.getObject(index);\r\n }\r\n else {\r\n return null;\r\n@@ -315,8 +316,29 @@ public void removeObject(Comparable rowKey, Comparable columnKey) {\n }\r\n \r\n // 2. check whether the column is now empty.\r\n+ allNull = true;\r\n \r\n+ for (int item = 0, itemCount = this.rows.size(); item < itemCount; \r\n+ item++) {\r\n+ row = (KeyedObjects) this.rows.get(item);\r\n+ int columnIndex = row.getIndex(columnKey);\r\n+ if (columnIndex >= 0 && row.getObject(columnIndex) != null) {\r\n+ allNull = false;\r\n+ break;\r\n+ }\r\n+ }\r\n \r\n+ if (allNull) {\r\n+ for (int item = 0, itemCount = this.rows.size(); item < itemCount; \r\n+ item++) {\r\n+ row = (KeyedObjects) this.rows.get(item);\r\n+ int columnIndex = row.getIndex(columnKey);\r\n+ if (columnIndex >= 0) {\r\n+ row.removeValue(columnIndex);\r\n+ }\r\n+ }\r\n+ this.columnKeys.remove(columnKey);\r\n+ }\r\n }\r\n \r\n /**\r\n@@ -342,6 +364,10 @@ public void removeRow(int rowIndex) {\n */\r\n public void removeRow(Comparable rowKey) {\r\n int index = getRowIndex(rowKey);\r\n+ if (index < 0) {\r\n+ throw new UnknownKeyException(\"Row key (\" + rowKey \r\n+ + \") not recognised.\");\r\n+ }\r\n removeRow(index);\r\n }\r\n \r\n@@ -375,7 +401,10 @@ public void removeColumn(Comparable columnKey) {\n Iterator iterator = this.rows.iterator();\r\n while (iterator.hasNext()) {\r\n KeyedObjects rowData = (KeyedObjects) iterator.next();\r\n- rowData.removeValue(columnKey);\r\n+ int i = rowData.getIndex(columnKey);\r\n+ if (i >= 0) {\r\n+ rowData.removeValue(i);\r\n+ }\r\n }\r\n this.columnKeys.remove(columnKey);\r\n }\r\n", + "failingTests": [ + { + "className": " org.jfree.data.junit.KeyedObjects2DTests", + "error": "org.jfree.data.UnknownKeyException", + "message": "The key (C2) is not recognised.", + "methodName": "testRemoveColumnByKey" + }, + { + "className": " org.jfree.data.junit.KeyedObjects2DTests", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<1> but was:<2>", + "methodName": "testRemoveValue" + }, + { + "className": " org.jfree.data.junit.KeyedObjects2DTests", + "error": "org.jfree.data.UnknownKeyException", + "message": "The key (C2) is not recognised.", + "methodName": "testGetValueByKey" + }, + { + "className": " org.jfree.data.junit.KeyedObjects2DTests", + "error": "org.jfree.data.UnknownKeyException", + "message": "The key (C1) is not recognised.", + "methodName": "testRemoveColumnByIndex" + }, + { + "className": " org.jfree.data.junit.KeyedObjects2DTests", + "error": "org.jfree.data.UnknownKeyException", + "message": "The key (C2) is not recognised.", + "methodName": "testSetObject" + }, + { + "className": " org.jfree.data.junit.KeyedObjects2DTests", + "error": "java.lang.ArrayIndexOutOfBoundsException", + "message": "-1", + "methodName": "testRemoveRowByKey" + } + ], + "metrics": { + "chunks": 7, + "classes": 1, + "files": 1, + "linesAdd": 30, + "linesMod": 2, + "linesRem": 1, + "methods": 3, + "sizeInLines": 33, + "spreadAllLines": 145, + "spreadCodeOnly": 72 + }, + "observations": "Implicit null check after loop throught a vector and using a flag variable.", + "program": "jfreechart", + "project": "Chart", + "repairActions": [ + "assignAdd", + "condBranIfAdd", + "condBranRem", + "exThrowsAdd", + "loopAdd", + "mcAdd", + "mcParValChange", + "objInstAdd", + "retExpChange", + "varAdd", + "varReplVar" + ], + "repairPatterns": [ + "condBlockExcAdd", + "condBlockOthersAdd", + "missComp", + "unwrapIfElse", + "wrongVarRef" + ], + "repairTools": [], + "revisionId": "227" + }, + { + "bugId": 26, + "changedFiles": { + "org/jfree/chart/axis/Axis.java": { + "inserts": [ + [ + 1192 + ], + [ + 1197 + ] + ] + } + }, + "diff": "--- a/source/org/jfree/chart/axis/Axis.java\n+++ b/source/org/jfree/chart/axis/Axis.java\n@@ -1189,11 +1189,13 @@ else if (edge == RectangleEdge.RIGHT) {\n }\r\n if (plotState != null && hotspot != null) {\r\n ChartRenderingInfo owner = plotState.getOwner();\r\n+ if (owner != null) {\r\n EntityCollection entities = owner.getEntityCollection();\r\n if (entities != null) {\r\n entities.add(new AxisLabelEntity(this, hotspot, \r\n this.labelToolTip, this.labelURL));\r\n }\r\n+ }\r\n }\r\n return state;\r\n \r\n", + "failingTests": [ + { + "className": " org.jfree.chart.junit.AreaChartTests", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testDrawWithNullInfo" + }, + { + "className": " org.jfree.chart.junit.BarChart3DTests", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testDrawWithNullInfo" + }, + { + "className": " org.jfree.chart.junit.BarChartTests", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testDrawWithNullInfo" + }, + { + "className": " org.jfree.chart.junit.GanttChartTests", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testDrawWithNullInfo" + }, + { + "className": " org.jfree.chart.junit.GanttChartTests", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testDrawWithNullInfo2" + }, + { + "className": " org.jfree.chart.junit.LineChart3DTests", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testDrawWithNullInfo" + }, + { + "className": " org.jfree.chart.junit.LineChartTests", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testDrawWithNullInfo" + }, + { + "className": " org.jfree.chart.junit.StackedAreaChartTests", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testDrawWithNullInfo" + }, + { + "className": " org.jfree.chart.junit.StackedBarChart3DTests", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testDrawWithNullInfo" + }, + { + "className": " org.jfree.chart.junit.StackedBarChartTests", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testDrawWithNullInfo" + }, + { + "className": " org.jfree.chart.junit.WaterfallChartTests", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testDrawWithNullInfo" + }, + { + "className": " org.jfree.chart.plot.junit.CategoryPlotTests", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "test1654215" + }, + { + "className": " org.jfree.chart.plot.junit.CategoryPlotTests", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testSerialization3" + }, + { + "className": " org.jfree.chart.plot.junit.CategoryPlotTests", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testSerialization4" + }, + { + "className": " org.jfree.chart.renderer.category.junit.BoxAndWhiskerRendererTests", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testDrawWithNullInfo" + }, + { + "className": " org.jfree.chart.renderer.category.junit.GroupedStackedBarRendererTests", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testDrawWithNullInfo" + }, + { + "className": " org.jfree.chart.renderer.category.junit.IntervalBarRendererTests", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testDrawWithNullInfo" + }, + { + "className": " org.jfree.chart.renderer.category.junit.LayeredBarRendererTests", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testDrawWithNullInfo" + }, + { + "className": " org.jfree.chart.renderer.category.junit.LevelRendererTests", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testDrawWithNullInfo" + }, + { + "className": " org.jfree.chart.renderer.category.junit.MinMaxCategoryRendererTests", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testDrawWithNullInfo" + }, + { + "className": " org.jfree.chart.renderer.category.junit.StatisticalBarRendererTests", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testDrawWithNullInfo" + }, + { + "className": " org.jfree.chart.renderer.category.junit.StatisticalLineAndShapeRendererTests", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testDrawWithNullInfo" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 2, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 2, + "spreadAllLines": 5, + "spreadCodeOnly": 5 + }, + "observations": "", + "program": "jfreechart", + "project": "Chart", + "repairActions": [ + "condBranIfAdd" + ], + "repairPatterns": [ + "missNullCheckN", + "wrapsIf" + ], + "repairTools": [ + "rtCardumen", + "rtDeepRepair", + "rtDynaMoth", + "rtJAID", + "rtKali", + "rtNopol" + ], + "revisionId": "103" + }, + { + "bugId": 25, + "changedFiles": { + "org/jfree/chart/renderer/category/StatisticalBarRenderer.java": { + "changes": [ + [ + 315 + ], + [ + 459 + ] + ], + "inserts": [ + [ + 259, + 260 + ], + [ + 316 + ], + [ + 344, + 345 + ], + [ + 403, + 404 + ], + [ + 460 + ], + [ + 487, + 488 + ] + ] + } + }, + "diff": "--- a/source/org/jfree/chart/renderer/category/StatisticalBarRenderer.java\n+++ b/source/org/jfree/chart/renderer/category/StatisticalBarRenderer.java\n@@ -256,6 +256,9 @@ protected void drawHorizontalItem(Graphics2D g2,\n \r\n // BAR X\r\n Number meanValue = dataset.getMeanValue(row, column);\r\n+ if (meanValue == null) {\r\n+ return;\r\n+ }\r\n \r\n double value = meanValue.doubleValue();\r\n double base = 0.0;\r\n@@ -312,7 +315,9 @@ else if (lclip <= 0.0) { // cases 5, 6, 7 and 8\n }\r\n \r\n // standard deviation lines\r\n- double valueDelta = dataset.getStdDevValue(row, column).doubleValue();\r\n+ Number n = dataset.getStdDevValue(row, column);\r\n+ if (n != null) {\r\n+ double valueDelta = n.doubleValue();\r\n double highVal = rangeAxis.valueToJava2D(meanValue.doubleValue() \r\n + valueDelta, dataArea, yAxisLocation);\r\n double lowVal = rangeAxis.valueToJava2D(meanValue.doubleValue() \r\n@@ -341,6 +346,7 @@ else if (lclip <= 0.0) { // cases 5, 6, 7 and 8\n line = new Line2D.Double(lowVal, rectY + rectHeight * 0.25, \r\n lowVal, rectY + rectHeight * 0.75);\r\n g2.draw(line);\r\n+ }\r\n \r\n CategoryItemLabelGenerator generator = getItemLabelGenerator(row, \r\n column);\r\n@@ -400,6 +406,9 @@ protected void drawVerticalItem(Graphics2D g2,\n \r\n // BAR Y\r\n Number meanValue = dataset.getMeanValue(row, column);\r\n+ if (meanValue == null) {\r\n+ return;\r\n+ }\r\n \r\n double value = meanValue.doubleValue();\r\n double base = 0.0;\r\n@@ -456,7 +465,9 @@ else if (lclip <= 0.0) { // cases 5, 6, 7 and 8\n }\r\n \r\n // standard deviation lines\r\n- double valueDelta = dataset.getStdDevValue(row, column).doubleValue();\r\n+ Number n = dataset.getStdDevValue(row, column);\r\n+ if (n != null) {\r\n+ double valueDelta = n.doubleValue();\r\n double highVal = rangeAxis.valueToJava2D(meanValue.doubleValue() \r\n + valueDelta, dataArea, yAxisLocation);\r\n double lowVal = rangeAxis.valueToJava2D(meanValue.doubleValue() \r\n@@ -484,6 +495,7 @@ else if (lclip <= 0.0) { // cases 5, 6, 7 and 8\n line = new Line2D.Double(rectX + rectWidth / 2.0d - 5.0d, lowVal,\r\n rectX + rectWidth / 2.0d + 5.0d, lowVal);\r\n g2.draw(line);\r\n+ }\r\n \r\n CategoryItemLabelGenerator generator = getItemLabelGenerator(row, \r\n column);\r\n", + "failingTests": [ + { + "className": " org.jfree.chart.renderer.category.junit.StatisticalBarRendererTests", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testDrawWithNullMeanVertical" + }, + { + "className": " org.jfree.chart.renderer.category.junit.StatisticalBarRendererTests", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testDrawWithNullDeviationVertical" + }, + { + "className": " org.jfree.chart.renderer.category.junit.StatisticalBarRendererTests", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testDrawWithNullMeanHorizontal" + }, + { + "className": " org.jfree.chart.renderer.category.junit.StatisticalBarRendererTests", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testDrawWithNullDeviationHorizontal" + } + ], + "metrics": { + "chunks": 6, + "classes": 1, + "files": 1, + "linesAdd": 12, + "linesMod": 2, + "linesRem": 0, + "methods": 2, + "sizeInLines": 14, + "spreadAllLines": 226, + "spreadCodeOnly": 185 + }, + "observations": "", + "program": "jfreechart", + "project": "Chart", + "repairActions": [ + "assignAdd", + "assignExpChange", + "condBranIfAdd", + "mcAdd", + "mcRem", + "retBranchAdd", + "varAdd" + ], + "repairPatterns": [ + "condBlockRetAdd", + "copyPaste", + "missNullCheckN", + "missNullCheckP", + "wrapsIf", + "wrongComp" + ], + "repairTools": [ + "rtCardumen", + "rtDeepRepair", + "rtDynaMoth", + "rtGPFL", + "rtGenProg", + "rtKali", + "rtNopol" + ], + "revisionId": "164" + }, + { + "bugId": 23, + "changedFiles": { + "org/jfree/chart/renderer/category/MinMaxCategoryRenderer.java": { + "inserts": [ + [ + -1 + ] + ] + } + }, + "diff": "--- a/source/org/jfree/chart/renderer/category/MinMaxCategoryRenderer.java\n+++ b/source/org/jfree/chart/renderer/category/MinMaxCategoryRenderer.java\n@@ -432,6 +432,25 @@ public void drawItem(Graphics2D g2, CategoryItemRendererState state,\n *\r\n * @since 1.0.7\r\n */\r\n+ public boolean equals(Object obj) {\r\n+ if (obj == this) {\r\n+ return true;\r\n+ }\r\n+ if (!(obj instanceof MinMaxCategoryRenderer)) {\r\n+ return false;\r\n+ }\r\n+ MinMaxCategoryRenderer that = (MinMaxCategoryRenderer) obj;\r\n+ if (this.plotLines != that.plotLines) {\r\n+ return false;\r\n+ }\r\n+ if (!PaintUtilities.equal(this.groupPaint, that.groupPaint)) {\r\n+ return false;\r\n+ }\r\n+ if (!this.groupStroke.equals(that.groupStroke)) {\r\n+ return false;\r\n+ }\r\n+ return super.equals(obj);\r\n+ }\r\n \r\n /**\r\n * Returns an icon.\r\n", + "failingTests": [ + { + "className": " org.jfree.chart.renderer.category.junit.MinMaxCategoryRendererTests", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testEquals" + } + ], + "metrics": { + "chunks": 1, + 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{\r\n double v = Math.max(value, this.lowerBound);\r\n v = Math.min(v, this.upperBound);\r\n- int g = (int) ((value - this.lowerBound) / (this.upperBound \r\n+ int g = (int) ((v - this.lowerBound) / (this.upperBound \r\n - this.lowerBound) * 255.0);\r\n return new Color(g, g, g);\r\n }\r\n", + "failingTests": [ + { + "className": " org.jfree.chart.renderer.junit.GrayPaintScaleTests", + "error": "java.lang.IllegalArgumentException", + "message": "Color parameter outside of expected range: Red Green Blue", + "methodName": "testGetPaint" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Replaces variable in an assignment expression.", + "program": "jfreechart", + "project": "Chart", + "repairActions": [ + "assignExpChange", + "varReplVar" + ], + "repairPatterns": [ + "expArithMod", + "singleLine", + "wrongComp", + "wrongVarRef" + ], + "repairTools": [ + "rtCardumen", + "rtJAID", + "rtssFix" + ], + "revisionId": "190" + }, + { + "bugId": 3, + "changedFiles": { + "com/google/javascript/jscomp/FlowSensitiveInlineVariables.java": { + "changes": [ + [ + 155 + ], + [ + 280 + ] + ], + "inserts": [ + [ + 368, + 375 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/FlowSensitiveInlineVariables.java\n+++ b/src/com/google/javascript/jscomp/FlowSensitiveInlineVariables.java\n@@ -152,7 +152,7 @@ public void enterScope(NodeTraversal t) {\n reachingUses = new MaybeReachingVariableUse(cfg, t.getScope(), compiler);\n reachingUses.analyze();\n for (Candidate c : candidates) {\n- if (c.canInline()) {\n+ if (c.canInline(t.getScope())) {\n c.inlineVariable();\n \n // If definition c has dependencies, then inlining it may have\n@@ -277,7 +277,7 @@ private Node getDefCfgNode() {\n return defMetadata.node;\n }\n \n- private boolean canInline() {\n+ private boolean canInline(final Scope scope) {\n // Cannot inline a parameter.\n if (getDefCfgNode().isFunction()) {\n return false;\n@@ -372,6 +372,12 @@ public boolean apply(Node input) {\n case Token.REGEXP:\n case Token.NEW:\n return true;\n+ case Token.NAME:\n+ Var var = scope.getOwnSlot(input.getString());\n+ if (var != null\n+ && var.getParentNode().isCatch()) {\n+ return true;\n+ }\n }\n return false;\n }\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.FlowSensitiveInlineVariablesTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testDoNotInlineCatchExpression1a" + }, + { + "className": " com.google.javascript.jscomp.FlowSensitiveInlineVariablesTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testDoNotInlineCatchExpression1" + }, + { + "className": " com.google.javascript.jscomp.FlowSensitiveInlineVariablesTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": 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b/src/com/google/javascript/jscomp/type/ChainableReverseAbstractInterpreter.java\n@@ -610,9 +610,13 @@ public JSType caseNumberType() {\n public JSType caseObjectType(ObjectType type) {\n if (value.equals(\"function\")) {\n JSType ctorType = getNativeType(U2U_CONSTRUCTOR_TYPE);\n- return resultEqualsValue && ctorType.isSubtype(type) ? ctorType : null;\n+ if (resultEqualsValue) {\n // Objects are restricted to \"Function\", subtypes are left\n+ return ctorType.getGreatestSubtype(type);\n+ } else {\n // Only filter out subtypes of \"function\"\n+ return type.isSubtype(ctorType) ? null : type;\n+ }\n }\n return matchesExpectation(\"object\") ? type : null;\n }\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.ClosureReverseAbstractInterpreterTest", + "error": "junit.framework.AssertionFailedError", + "message": "Expected: (Object|boolean|number|string)", + "methodName": "testGoogIsFunction2" + }, + { + "className": " com.google.javascript.jscomp.SemanticReverseAbstractInterpreterTest", + "error": "junit.framework.AssertionFailedError", + "message": "Expected: (Object|boolean|number|string)", + "methodName": "testTypeof3" + } + ], + "metrics": { + "chunks": 3, + "classes": 1, + "files": 1, + "linesAdd": 4, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 5, + "spreadAllLines": 2, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condBranIfElseAdd", + "mcAdd", + "mcRem", + "retBranchAdd", + "retRem" + ], + "repairPatterns": [ + "condBlockRetAdd", + "expLogicReduce", + "wrongComp" + ], + "repairTools": [ + "rtCardumen", + "rtNopol" + ], + "revisionId": "e736b1c92981fafdc87f3f41f66918305f173734" + }, + { + "bugId": 5, + "changedFiles": { + "com/google/javascript/jscomp/InlineObjectLiterals.java": { + "inserts": [ + [ + 173, + 174, + 175, + 176, + 177, + 178, + 179, + 180, + 181, + 182, + 183, + 184, + 185 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/InlineObjectLiterals.java\n+++ b/src/com/google/javascript/jscomp/InlineObjectLiterals.java\n@@ -173,6 +173,9 @@ private boolean isInlinableObject(List refs) {\n \n // Deleting a property has different semantics from deleting\n // a variable, so deleted properties should not be inlined.\n+ if (gramps.isDelProp()) {\n+ return false;\n+ }\n \n // NOTE(nicksantos): This pass's object-splitting algorithm has\n // a blind spot. It assumes that if a property isn't defined on an\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.InlineObjectLiteralsTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testNoInlineDeletedProperties" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 3, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 3, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condBranIfAdd", + "mcAdd", + "retBranchAdd" + ], + "repairPatterns": [ + "condBlockRetAdd" + ], + "repairTools": [ + "rtDynaMoth", + "rtJAID", + "rtNopol" + ], + "revisionId": "59eec92e364b2ec2cec9dd63449f5c0134983f18" + }, + { + "bugId": 6, + "changedFiles": { + "com/google/javascript/jscomp/TypeValidator.java": { + "deletes": [ + [ + 366 + ], + [ + 367 + ], + [ + 368 + ], + [ + 385 + ], + [ + 405 + ], + [ + 406 + ], + [ + 407 + ], + [ + 409 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/TypeValidator.java\n+++ b/src/com/google/javascript/jscomp/TypeValidator.java\n@@ -363,9 +363,6 @@ boolean expectCanAssignToPropertyOf(NodeTraversal t, Node n, JSType rightType,\n JSType leftType, Node owner, String propName) {\n // The NoType check is a hack to make typedefs work OK.\n if (!leftType.isNoType() && !rightType.canAssignTo(leftType)) {\n- if ((leftType.isConstructor() || leftType.isEnumType()) && (rightType.isConstructor() || rightType.isEnumType())) {\n- registerMismatch(rightType, leftType, null);\n- } else {\n // Do not type-check interface methods, because we expect that\n // they will have dummy implementations that do not match the type\n // annotations.\n@@ -382,7 +379,6 @@ boolean expectCanAssignToPropertyOf(NodeTraversal t, Node n, JSType rightType,\n \"assignment to property \" + propName + \" of \" +\n getReadableJSTypeName(owner, true),\n rightType, leftType);\n- }\n return false;\n }\n return true;\n@@ -402,11 +398,7 @@ boolean expectCanAssignToPropertyOf(NodeTraversal t, Node n, JSType rightType,\n boolean expectCanAssignTo(NodeTraversal t, Node n, JSType rightType,\n JSType leftType, String msg) {\n if (!rightType.canAssignTo(leftType)) {\n- if ((leftType.isConstructor() || leftType.isEnumType()) && (rightType.isConstructor() || rightType.isEnumType())) {\n- registerMismatch(rightType, leftType, null);\n- } else {\n mismatch(t, n, msg, rightType, leftType);\n- }\n return false;\n }\n return true;\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.LooseTypeCheckTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<2> but was:<1>", + "methodName": "testTypeRedefinition" + }, + { + "className": " com.google.javascript.jscomp.TypeCheckTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected a warning", + "methodName": "testIssue635b" + }, + { + "className": " com.google.javascript.jscomp.TypeCheckTest", + "error": "junit.framework.AssertionFailedError", + "message": "unexpected warning(s) : JSC_DUP_VAR_DECLARATION. variable a.A redefined with type function (new:a.A): undefined, original definition at [testcode]:1 with type enum{a.A} at [testcode] line 1 : 61 expected:<2> but was:<1>", + "methodName": "testTypeRedefinition" + } + ], + "metrics": { + "chunks": 4, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 0, + "linesRem": 8, + "methods": 2, + "sizeInLines": 8, + "spreadAllLines": 36, + "spreadCodeOnly": 20 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condBranRem", + "mcRem" + ], + "repairPatterns": [ + "copyPaste", + "unwrapIfElse" + ], + "repairTools": [], + "revisionId": "9f7a353385bf0b93cdaeaa56cc5b1450db790127" + }, + { + "bugId": 2, + "changedFiles": { + "com/google/javascript/jscomp/TypeCheck.java": { + "inserts": [ + [ + 1572, + 1573, + 1574 + ], + [ + 1575 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/TypeCheck.java\n+++ b/src/com/google/javascript/jscomp/TypeCheck.java\n@@ -1569,9 +1569,13 @@ private void checkInterfaceConflictProperties(NodeTraversal t, Node n,\n ObjectType interfaceType) {\n ObjectType implicitProto = interfaceType.getImplicitPrototype();\n Set currentPropertyNames;\n+ if (implicitProto == null) {\n // This can be the case if interfaceType is proxy to a non-existent\n // object (which is a bad type annotation, but shouldn't crash).\n+ currentPropertyNames = ImmutableSet.of();\n+ } else {\n currentPropertyNames = implicitProto.getOwnPropertyNames();\n+ }\n for (String name : currentPropertyNames) {\n ObjectType oType = properties.get(name);\n if (oType != null) {\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.TypeCheckTest", + "error": "java.lang.NullPointerException", + "message": "", + "methodName": "testBadInterfaceExtendsNonExistentInterfaces" + } + ], + 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args.\n //\n // See http://code.google.com/p/closure-compiler/issues/detail?id=253\n+ if (!removeGlobals) {\n+ return;\n+ }\n \n Node function = fnScope.getRootNode();\n \n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.CommandLineRunnerTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testSimpleModeLeavesUnusedParams" + }, + { + "className": " com.google.javascript.jscomp.CommandLineRunnerTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testForwardDeclareDroppedTypes" + }, + { + "className": " com.google.javascript.jscomp.CommandLineRunnerTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testDebugFlag1" + }, + { + "className": " com.google.javascript.jscomp.IntegrationTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testIssue787" + }, + { + "className": " 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"repairActions": [ + "condBranIfAdd", + "retBranchAdd" + ], + "repairPatterns": [ + "condBlockRetAdd" + ], + "repairTools": [ + "rtDynaMoth", + "rtNopol" + ], + "revisionId": "1dfad5043a207e032a78ef50c3cba50488bcd300" + }, + { + "bugId": 4, + "changedFiles": { + "com/google/javascript/rhino/jstype/NamedType.java": { + "changes": [ + [ + 190 + ], + [ + 202 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/rhino/jstype/NamedType.java\n+++ b/src/com/google/javascript/rhino/jstype/NamedType.java\n@@ -187,7 +187,7 @@ JSType resolveInternal(ErrorReporter t, StaticScope enclosing) {\n // makes more sense. Now, resolution via registry is first in order to\n // avoid triggering the warnings built into the resolution via properties.\n boolean resolved = resolveViaRegistry(t, enclosing);\n- if (detectImplicitPrototypeCycle()) {\n+ if (detectInheritanceCycle()) {\n handleTypeCycle(t);\n }\n \n@@ -199,7 +199,7 @@ JSType resolveInternal(ErrorReporter t, StaticScope enclosing) {\n }\n \n resolveViaProperties(t, enclosing);\n- if (detectImplicitPrototypeCycle()) {\n+ if (detectInheritanceCycle()) {\n handleTypeCycle(t);\n }\n \n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.TypeCheckTest", + "error": "junit.framework.AssertionFailedError", + "message": "unexpected warning(s) : JSC_IMPLEMENTS_NON_INTERFACE. can only implement interfaces at [testcode] line 2 : 29, JSC_IMPLEMENTS_NON_INTERFACE. can only implement interfaces at [testcode] line 3 : 26 expected:<1> but was:<2>", + "methodName": "testImplementsExtendsLoop" + }, + { + "className": " com.google.javascript.jscomp.TypeCheckTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<[Parse error. Cycle detected in inheritance chain of type T]> but was:<[can only implement interfaces]>", + "methodName": "testImplementsLoop" + }, + { + "className": " com.google.javascript.jscomp.TypeCheckTest", + "error": "java.lang.StackOverflowError", + "message": "", + "methodName": "testConversionFromInterfaceToRecursiveConstructor" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 2, + "linesRem": 0, + "methods": 1, + "sizeInLines": 2, + "spreadAllLines": 11, + "spreadCodeOnly": 9 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condExpMod", + "mcRepl" + ], + "repairPatterns": [ + "copyPaste", + "expLogicMod", + "wrongMethodRef" + ], + "repairTools": [], + "revisionId": "efefb736fccc2039b5fb079710b3f2ac82b8c6e4" + }, + { + "bugId": 8, + "changedFiles": { + "com/google/javascript/jscomp/CollapseVariableDeclarations.java": { + "changes": [ + [ + 202 + ], + [ + 203 + ], + [ + 204 + ] + ], + "inserts": [ + [ + -1 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/CollapseVariableDeclarations.java\n+++ b/src/com/google/javascript/jscomp/CollapseVariableDeclarations.java\n@@ -201,10 +201,14 @@ private boolean canBeRedeclared(Node n, Scope s) {\n Var var = s.getVar(lhs.getString());\n return var != null\n && var.getScope() == s\n+ && !isNamedParameter(var)\n && !blacklistedVars.contains(var);\n }\n }\n \n+ private boolean isNamedParameter(Var v) {\n+ return v.getParentNode().isParamList();\n+ }\n \n private void applyCollapses() {\n for (Collapse collapse : collapses) {\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.CollapseVariableDeclarationsTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testIssue820" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 4, + "linesMod": 0, + "linesRem": 0, + "methods": 2, + "sizeInLines": 4, + "spreadAllLines": 4, + "spreadCodeOnly": 3 + }, + "observations": "Adds a new condition in expression and a new method invocated by this condition.", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "mcAdd", + "mdAdd", + "retBranchAdd", + "retExpChange" + ], + "repairPatterns": [ + "expLogicExpand" + ], + "repairTools": [ + "rtDynaMoth", + "rtNopol" + ], + "revisionId": "6300a43566d4adcf8828128267808a8740edc835" + }, + { + "bugId": 9, + "changedFiles": { + "com/google/javascript/jscomp/ProcessCommonJSModules.java": { + "changes": [ + [ + 183 + ] + ], + "inserts": [ + [ + 117, + 118, + 119, + 120 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/ProcessCommonJSModules.java\n+++ b/src/com/google/javascript/jscomp/ProcessCommonJSModules.java\n@@ -116,6 +116,7 @@ public static String toModuleName(String requiredFilename,\n private String normalizeSourceName(String filename) {\n // The DOS command shell will normalize \"/\" to \"\\\", so we have to\n // wrestle it back.\n+ filename = filename.replace(\"\\\\\", \"/\");\n \n if (filename.indexOf(filenamePrefix) == 0) {\n filename = filename.substring(filenamePrefix.length());\n@@ -180,7 +181,7 @@ private void visitScript(NodeTraversal t, Node script) {\n Preconditions.checkArgument(scriptNodeCount == 1,\n \"ProcessCommonJSModules supports only one invocation per \" +\n \"CompilerInput / script node\");\n- String moduleName = guessCJSModuleName(normalizeSourceName(script.getSourceFileName()));\n+ String moduleName = guessCJSModuleName(script.getSourceFileName());\n script.addChildToFront(IR.var(IR.name(moduleName), IR.objectlit())\n .copyInformationFromForTree(script));\n if (reportDependencies) {\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.ProcessCommonJSModulesTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected: but was:", + "methodName": "testGuessModuleName" + } + ], + "metrics": { + "chunks": 2, + "classes": 2, + "files": 1, + "linesAdd": 1, + "linesMod": 1, + "linesRem": 0, + "methods": 2, + "sizeInLines": 2, + "spreadAllLines": 64, + "spreadCodeOnly": 43 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "assignAdd", + "assignExpChange", + "mcAdd", + "mcParValChange", + "mcRem" + ], + "repairPatterns": [ + "missComp", + "unwrapMethod" + ], + "repairTools": [], + "revisionId": "e9c15465c000c19ef4e0b8f68a680589ae4111d7" + }, + { + "bugId": 11, + "changedFiles": { + "com/google/javascript/jscomp/TypeCheck.java": { + "deletes": [ + [ + 1314 + ], + [ + 1315 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/TypeCheck.java\n+++ b/src/com/google/javascript/jscomp/TypeCheck.java\n@@ -1311,8 +1311,6 @@ private void visitGetProp(NodeTraversal t, Node n, Node parent) {\n \n if (childType.isDict()) {\n report(t, property, TypeValidator.ILLEGAL_PROPERTY_ACCESS, \"'.'\", \"dict\");\n- } else if (n.getJSType() != null && parent.isAssign()) {\n- return;\n } else if (validator.expectNotNullOrUndefined(t, n, childType,\n \"No properties on this expression\", getNativeType(OBJECT_TYPE))) {\n checkPropertyAccess(childType, property.getString(), t, n);\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.TypeCheckTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected a warning", + "methodName": "testGetprop4" + }, + { + "className": " com.google.javascript.jscomp.TypeCheckTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected a warning", + "methodName": "testIssue810" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 0, + "linesRem": 2, + "methods": 1, + "sizeInLines": 2, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condBranRem", + "mcRem", + "retRem" + ], + "repairPatterns": [ + "condBlockRem" + ], + "repairTools": [], + "revisionId": "482b767639e6eec7c30d8898851560c41b66d885" + }, + { + "bugId": 12, + "changedFiles": { + "com/google/javascript/jscomp/MaybeReachingVariableUse.java": { + "inserts": [ + [ + 160 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/MaybeReachingVariableUse.java\n+++ b/src/com/google/javascript/jscomp/MaybeReachingVariableUse.java\n@@ -157,6 +157,12 @@ ReachingUses flowThrough(Node n, ReachingUses input) {\n }\n \n private boolean hasExceptionHandler(Node cfgNode) {\n+ List> branchEdges = getCfg().getOutEdges(cfgNode);\n+ for (DiGraphEdge edge : branchEdges) {\n+ if (edge.getValue() == Branch.ON_EX) {\n+ return true;\n+ }\n+ }\n return false;\n }\n \n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.FlowSensitiveInlineVariablesTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testIssue794b" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 6, + "linesMod": 0, + 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return mayBeStringHelper(n);\n }\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.PeepholeFoldConstantsTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testIssue821" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "mcRepl", + "retExpChange" + ], + "repairPatterns": [ + "singleLine", + "wrongMethodRef" + ], + "repairTools": [ + "rtCardumen", + "rtDynaMoth", + "rtHDRepair", + "rtNopol" + ], + "revisionId": "0884a4cbef1c82153ef306477a12af0480385a35" + }, + { + "bugId": 14, + "changedFiles": { + "com/google/javascript/jscomp/ControlFlowAnalysis.java": { + "changes": [ + [ + 767 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/ControlFlowAnalysis.java\n+++ b/src/com/google/javascript/jscomp/ControlFlowAnalysis.java\n@@ -764,7 +764,7 @@ private static Node computeFollowNode(\n } else if (parent.getLastChild() == node){\n if (cfa != null) {\n for (Node finallyNode : cfa.finallyMap.get(parent)) {\n- cfa.createEdge(fromNode, Branch.UNCOND, finallyNode);\n+ cfa.createEdge(fromNode, Branch.ON_EX, finallyNode);\n }\n }\n return computeFollowNode(fromNode, parent, cfa);\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.CheckMissingReturnTest", + "error": "junit.framework.AssertionFailedError", + "message": "Unexpected error(s): JSC_MISSING_RETURN_STATEMENT. Missing return statement. Function expected to return number. at testcode line 1 : 24 expected:<0> but was:<1>", + "methodName": "testIssue779" + }, + { + "className": " com.google.javascript.jscomp.ControlFlowAnalysisTest", + "error": "junit.framework.AssertionFailedError", + "message": "No cross edges found", + "methodName": "testDeepNestedFinally" + }, + { + "className": " com.google.javascript.jscomp.ControlFlowAnalysisTest", + "error": "junit.framework.AssertionFailedError", + "message": "No cross edges found", + "methodName": "testDeepNestedBreakwithFinally" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Parameter value change.", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "mcParValChange", + "varReplVar" + ], + "repairPatterns": [ + "constChange", + "singleLine", + "wrongVarRef" + ], + "repairTools": [ + "rtHDRepair", + "rtNopol", + "rtssFix" + ], + "revisionId": "4b15b25f400335b6e2820cb690430324748372f9" + }, + { + "bugId": 17, + "changedFiles": { + "com/google/javascript/jscomp/TypedScopeCreator.java": { + "changes": [ + [ + 1291 + ] + ], + "inserts": [ + [ + 1292, + 1293, + 1294, + 1295 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/TypedScopeCreator.java\n+++ b/src/com/google/javascript/jscomp/TypedScopeCreator.java\n@@ -1288,8 +1288,12 @@ private JSType getDeclaredType(String sourceName, JSDocInfo info,\n if (info.isConstant()) {\n JSType knownType = null;\n if (rValue != null) {\n- if (rValue.getJSType() != null && !rValue.getJSType().isUnknownType()) {\n+ JSDocInfo rValueInfo = rValue.getJSDocInfo();\n+ if (rValueInfo != null && rValueInfo.hasType()) {\n // If rValue has a type-cast, we use the type in the type-cast.\n+ return rValueInfo.getType().evaluate(scope, typeRegistry);\n+ } else if (rValue.getJSType() != null\n+ && !rValue.getJSType().isUnknownType()) {\n // If rValue's type was already computed during scope creation,\n // then we can safely use that.\n return rValue.getJSType();\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.TypeCheckTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected: but was:<0>", + "methodName": "testUselessCode" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 2, + "linesRem": 17, + "methods": 1, + "sizeInLines": 19, + "spreadAllLines": 11, + "spreadCodeOnly": 7 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "assignRem", + "condBranRem", + "condExpExpand", + "loopRem", + "mcAdd", + "mcRem", + "retRem", + "varRem" + ], + "repairPatterns": [ + "condBlockRem", + "expLogicExpand", + "expLogicMod", + "wrongComp" + ], + "repairTools": [ + "rtCardumen", + "rtDynaMoth", + "rtNopol" + ], + "revisionId": "1787d7b2cff83a0f177dd958033c53e4502406d2" + }, + { + "bugId": 15, + "changedFiles": { + "com/google/javascript/jscomp/FlowSensitiveInlineVariables.java": { + "inserts": [ + [ + 101, + 102, + 103 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/FlowSensitiveInlineVariables.java\n+++ b/src/com/google/javascript/jscomp/FlowSensitiveInlineVariables.java\n@@ -99,6 +99,9 @@ public boolean apply(Node n) {\n return true;\n }\n \n+ if (n.isDelProp()) {\n+ return true;\n+ }\n \n for (Node c = n.getFirstChild(); c != null; c = c.getNext()) {\n if (!ControlFlowGraph.isEnteringNewCfgNode(c) && apply(c)) {\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.FlowSensitiveInlineVariablesTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testSimpleForIn" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 3, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 3, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condBranIfAdd", + "mcAdd", + "retBranchAdd" + ], + "repairPatterns": [ + "condBlockRetAdd" + ], + "repairTools": [ + "rtNopol" + ], + "revisionId": "968b3f467f51c6bfec18af1fbcf980a0f19a1fb3" + }, + { + "bugId": 16, + "changedFiles": { + "com/google/javascript/jscomp/ScopedAliases.java": { + "changes": [ + [ + 172 + ], + [ + 180 + ], + [ + 468 + ] + ], + "inserts": [ + [ + -1 + ], + [ + 174, + 175, + 176 + ], + [ + 180 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/ScopedAliases.java\n+++ b/src/com/google/javascript/jscomp/ScopedAliases.java\n@@ -167,17 +167,23 @@ public void applyAlias() {\n \n private class AliasedTypeNode implements AliasUsage {\n private final Node typeReference;\n+ private final Node aliasDefinition;\n private final String aliasName;\n \n- AliasedTypeNode(Node typeReference,\n+ AliasedTypeNode(Node typeReference, Node aliasDefinition,\n String aliasName) {\n this.typeReference = typeReference;\n+ this.aliasDefinition = aliasDefinition;\n this.aliasName = aliasName;\n }\n \n @Override\n public void applyAlias() {\n- typeReference.setString(aliasName);\n+ String typeName = typeReference.getString();\n+ String aliasExpanded =\n+ Preconditions.checkNotNull(aliasDefinition.getQualifiedName());\n+ Preconditions.checkState(typeName.startsWith(aliasName));\n+ typeReference.setString(typeName.replaceFirst(aliasName, aliasExpanded));\n }\n }\n \n@@ -465,7 +471,7 @@ private void fixTypeNode(Node typeNode) {\n Var aliasVar = aliases.get(baseName);\n if (aliasVar != null) {\n Node aliasedNode = aliasVar.getInitialValue();\n- aliasUsages.add(new AliasedTypeNode(typeNode, aliasedNode.getQualifiedName() + name.substring(endIndex)));\n+ aliasUsages.add(new AliasedTypeNode(typeNode, aliasedNode, baseName));\n }\n }\n \n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.IntegrationTest", + "error": "junit.framework.AssertionFailedError", + "message": "Expected no warnings or errors", + "methodName": "testIssue772" + }, + { + "className": " com.google.javascript.jscomp.ScopedAliasesTest", + "error": "junit.framework.AssertionFailedError", + "message": "Expected: but was: Node tree inequality:", + "methodName": "testIssue772" + } + ], + "metrics": { + "chunks": 5, + "classes": 2, + "files": 1, + "linesAdd": 6, + "linesMod": 3, + "linesRem": 0, + "methods": 3, + "sizeInLines": 9, + "spreadAllLines": 296, + "spreadCodeOnly": 217 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "assignAdd", + "mcAdd", + "mcParAdd", + "mcParValChange", + "mcRepl", + "mdParAdd", + "objInstMod", + "varAdd" + ], + "repairPatterns": [ + "initFix", + "wrapsMethod", + "wrongComp" + ], + "repairTools": [ + "rtDynaMoth", + "rtNopol" + ], + "revisionId": "3b97e5e4212c769daa22a96094ed19b4658c8760" + }, + { + "bugId": 18, + "changedFiles": { + "com/google/javascript/jscomp/Compiler.java": { + "changes": [ + [ + 1288 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/Compiler.java\n+++ b/src/com/google/javascript/jscomp/Compiler.java\n@@ -1285,7 +1285,7 @@ Node parseInputs() {\n \n // Check if the sources need to be re-ordered.\n boolean staleInputs = false;\n- if (options.dependencyOptions.needsManagement() && options.closurePass) {\n+ if (options.dependencyOptions.needsManagement()) {\n for (CompilerInput input : inputs) {\n // Forward-declare all the provided types, so that they\n // are not flagged even if they are dropped from the process.\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.IntegrationTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testDependencySorting" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condExpRed" + ], + "repairPatterns": [ + "expLogicReduce", + "singleLine" + ], + "repairTools": [ + "rtDynaMoth", + "rtJAID", + "rtNopol" + ], + "revisionId": "ea119a2d06328852763f9ee447c3bf74fa1f83dc" + }, + { + "bugId": 20, + "changedFiles": { + "com/google/javascript/jscomp/PeepholeSubstituteAlternateSyntax.java": { + "changes": [ + [ + 220 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/PeepholeSubstituteAlternateSyntax.java\n+++ b/src/com/google/javascript/jscomp/PeepholeSubstituteAlternateSyntax.java\n@@ -217,7 +217,8 @@ private Node tryFoldSimpleFunctionCall(Node n) {\n // slightly different semantics than '' + (a). See\n // http://code.google.com/p/closure-compiler/issues/detail?id=759\n Node value = callTarget.getNext();\n- if (value != null) {\n+ if (value != null && value.getNext() == null &&\n+ NodeUtil.isImmutableValue(value)) {\n Node addition = IR.add(\n IR.string(\"\").srcref(callTarget),\n value.detachFromParent());\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.PeepholeSubstituteAlternateSyntaxTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testSimpleFunctionCall" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 1, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 2, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condExpExpand", + "mcAdd" + ], + "repairPatterns": [ + "expLogicExpand", + "missNullCheckP", + "singleLine" + ], + "repairTools": [ + "rtDynaMoth", + "rtNopol" + ], + "revisionId": "ebf229b05f4ee71bc05d70830f5dd5683271d661" + }, + { + "bugId": 19, + "changedFiles": { + "com/google/javascript/jscomp/type/ChainableReverseAbstractInterpreter.java": { + "inserts": [ + [ + 159, + 162, + 163, + 171, + 172, + 173, + 174 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/type/ChainableReverseAbstractInterpreter.java\n+++ b/src/com/google/javascript/jscomp/type/ChainableReverseAbstractInterpreter.java\n@@ -169,7 +169,9 @@ protected void declareNameInScope(FlowScope scope, Node node, JSType type) {\n scope.inferQualifiedSlot(node, qualifiedName, origType, type);\n break;\n \n+ case Token.THIS:\n // \"this\" references aren't currently modeled in the CFG.\n+ break;\n \n default:\n throw new IllegalArgumentException(\"Node cannot be refined. \\n\" +\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.TypeInferenceTest", + "error": "java.lang.IllegalArgumentException", + "message": "Node cannot be refined. ", + "methodName": "testNoThisInference" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 2, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 2, + "spreadAllLines": 1, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condBranCaseAdd" + ], + "repairPatterns": [ + "condBlockOthersAdd" + ], + "repairTools": [ + "rtDynaMoth" + ], + "revisionId": "686146c4de7d2bd985156ae15175365633dd0f94" + }, + { + "bugId": 23, + "changedFiles": { + "com/google/javascript/jscomp/PeepholeFoldConstants.java": { + "changes": [ + [ + 1451 + ] + ], + "inserts": [ + [ + 1452 + ], + [ + 1453, + 1454 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/PeepholeFoldConstants.java\n+++ b/src/com/google/javascript/jscomp/PeepholeFoldConstants.java\n@@ -1448,8 +1448,14 @@ private Node tryFoldArrayAccess(Node n, Node left, Node right) {\n \n Node current = left.getFirstChild();\n Node elem = null;\n- for (int i = 0; current != null && i < intIndex; i++) {\n+ for (int i = 0; current != null; i++) {\n+ if (i != intIndex) {\n+ if (mayHaveSideEffects(current)) {\n+ return n;\n+ }\n+ } else {\n elem = current;\n+ }\n \n current = current.getNext();\n }\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.PeepholeFoldConstantsTest", + "error": "junit.framework.AssertionFailedError", + "message": "Unexpected error(s): JSC_INDEX_OUT_OF_BOUNDS_ERROR. Array index out of bounds: NUMBER 0.0 1 [source_file: testcode] at testcode line 1 : 10 expected:<0> but was:<1>", + "methodName": "testFoldGetElem" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 6, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 7, + "spreadAllLines": 1, + "spreadCodeOnly": 1 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condBranIfAdd", + "condBranIfElseAdd", + "loopCondChange", + "mcAdd", + "retBranchAdd" + ], + "repairPatterns": [ + "expLogicReduce", + "wrapsIfElse" + ], + "repairTools": [], + "revisionId": "b59cdd9e2dc64d2db86b90982c200a78f2f85e50" + }, + { + "bugId": 24, + "changedFiles": { + "com/google/javascript/jscomp/ScopedAliases.java": { + "inserts": [ + [ + 287, + 288, + 289, + 290, + 291 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/ScopedAliases.java\n+++ b/src/com/google/javascript/jscomp/ScopedAliases.java\n@@ -275,8 +275,8 @@ private void findAliases(NodeTraversal t) {\n Node n = v.getNode();\n int type = n.getType();\n Node parent = n.getParent();\n- if (parent.isVar()) {\n- if (n.hasChildren() && n.getFirstChild().isQualifiedName()) {\n+ if (parent.isVar() &&\n+ n.hasChildren() && n.getFirstChild().isQualifiedName()) {\n String name = n.getString();\n Var aliasVar = scope.getVar(name);\n aliases.put(name, aliasVar);\n@@ -284,15 +284,16 @@ private void findAliases(NodeTraversal t) {\n String qualifiedName =\n aliasVar.getInitialValue().getQualifiedName();\n transformation.addAlias(name, qualifiedName);\n+ } else if (v.isBleedingFunction()) {\n // Bleeding functions already get a BAD_PARAMETERS error, so just\n // do nothing.\n+ } else if (parent.getType() == Token.LP) {\n // Parameters of the scope function also get a BAD_PARAMETERS\n // error.\n } else {\n // TODO(robbyw): Support using locals for private variables.\n report(t, n, GOOG_SCOPE_NON_ALIAS_LOCAL, n.getString());\n }\n- }\n }\n }\n \n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.ScopedAliasesTest", + "error": "junit.framework.AssertionFailedError", + "message": "There should be one error. expected:<1> but was:<0>", + "methodName": "testNonAliasLocal" + } + ], + "metrics": { + "chunks": 4, + "classes": 1, + "files": 1, + "linesAdd": 2, + "linesMod": 2, + "linesRem": 1, + "methods": 1, + "sizeInLines": 5, + "spreadAllLines": 15, + "spreadCodeOnly": 9 + }, + "observations": "Again, a kind of Wrap-with-IfElse where some conditionals were missing.", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condBranIfElseAdd", + "condBranRem", + "condExpExpand", + "mcAdd" + ], + "repairPatterns": [ + "condBlockOthersAdd", + "expLogicExpand", + "missComp" + ], + "repairTools": [], + "revisionId": "70ca6014779735bdc52ca0e80e528257829a15e7" + }, + { + "bugId": 22, + "changedFiles": { + "com/google/javascript/jscomp/CheckSideEffects.java": { + "changes": [ + [ + 101 + ], + [ + 102 + ], + [ + 103 + ], + [ + 104 + ], + [ + 105 + ], + [ + 106 + ], + [ + 107 + ], + [ + 111 + ], + [ + 112 + ], + [ + 113 + ], + [ + 114 + ], + [ + 115 + ], + [ + 116 + ], + [ + 117 + ], + [ + 118 + ], + [ + 119 + ], + [ + 120 + ], + [ + 121 + ], + [ + 122 + ], + [ + 123 + ], + [ + 124 + ], + [ + 125 + ], + [ + 126 + ], + [ + 127 + ], + [ + 128 + ] + ], + "deletes": [ + [ + 134 + ], + [ + 135 + ], + [ + 136 + ], + [ + 137 + ], + [ + 138 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/CheckSideEffects.java\n+++ b/src/com/google/javascript/jscomp/CheckSideEffects.java\n@@ -98,44 +98,20 @@ public void visit(NodeTraversal t, Node n, Node parent) {\n // Do not try to remove a block or an expr result. We already handle\n // these cases when we visit the child, and the peephole passes will\n // fix up the tree in more clever ways when these are removed.\n- if (parent.getType() == Token.COMMA) {\n- Node gramps = parent.getParent();\n- if (gramps.isCall() && parent == gramps.getFirstChild()) {\n- if (n == parent.getFirstChild() && parent.getChildCount() == 2 && n.getNext().isName() && \"eval\".equals(n.getNext().getString())) {\n+ if (n.isExprResult() || n.isBlock()) {\n return;\n- }\n }\n \n // This no-op statement was there so that JSDoc information could\n // be attached to the name. This check should not complain about it.\n- if (n == parent.getLastChild()) {\n- for (Node an : parent.getAncestors()) {\n- int ancestorType = an.getType();\n- if (ancestorType == Token.COMMA)\n- continue;\n- if (ancestorType != Token.EXPR_RESULT && ancestorType != Token.BLOCK)\n- return;\n- else\n- break;\n- }\n- }\n- } else if (parent.getType() != Token.EXPR_RESULT && parent.getType() != Token.BLOCK) {\n- if (parent.getType() == Token.FOR && parent.getChildCount() == 4 && (n == parent.getFirstChild() ||\n- n == parent.getFirstChild().getNext().getNext())) {\n- } else {\n+ if (n.isQualifiedName() && n.getJSDocInfo() != null) {\n return;\n- }\n }\n \n boolean isResultUsed = NodeUtil.isExpressionResultUsed(n);\n boolean isSimpleOp = NodeUtil.isSimpleOperatorType(n.getType());\n if (!isResultUsed &&\n (isSimpleOp || !NodeUtil.mayHaveSideEffects(n, t.getCompiler()))) {\n- if (n.isQualifiedName() && n.getJSDocInfo() != null) {\n- return;\n- } else if (n.isExprResult()) {\n- return;\n- }\n String msg = \"This code lacks side-effects. Is there a bug?\";\n if (n.isString()) {\n msg = \"Is there a missing '+' on the previous line?\";\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.CheckSideEffectsTest", + "error": "junit.framework.AssertionFailedError", + "message": "There should be one warning, repeated 1 time(s). expected:<1> but was:<0>", + "methodName": "testUselessCode" + } + ], + "metrics": { + "chunks": 5, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 2, + "linesRem": 24, + "methods": 1, + "sizeInLines": 26, + "spreadAllLines": 12, + "spreadCodeOnly": 8 + }, + "observations": "It seems that the old conditions were wrong, so a replacement was made. It simplifies too the implementation. It is similar to a Wrap-with-If operation plus a move of some conditionals.", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "assignRem", + "condBranIfAdd", + "condBranRem", + "loopRem", + "mcAdd", + "mcRem", + "retRem", + "varRem" + ], + "repairPatterns": [ + "condBlockRem", + "expLogicMod", + "missNullCheckN", + "unwrapIfElse", + "wrongComp" + ], + "repairTools": [ + "rtCardumen", + "rtDynaMoth", + "rtNopol" + ], + "revisionId": "43a55234ef122a1ed98681ce0350506207b878d5" + }, + { + "bugId": 26, + "changedFiles": { + "com/google/javascript/jscomp/ProcessCommonJSModules.java": { + "inserts": [ + [ + -1 + ], + [ + 207, + 208 + ], + [ + 228 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/ProcessCommonJSModules.java\n+++ b/src/com/google/javascript/jscomp/ProcessCommonJSModules.java\n@@ -125,6 +125,7 @@ private String normalizeSourceName(String filename) {\n AbstractPostOrderCallback {\n \n private int scriptNodeCount = 0;\n+ private Set modulesWithExports = Sets.newHashSet();\n \n @Override\n public void visit(NodeTraversal t, Node n, Node parent) {\n@@ -204,6 +205,9 @@ private void visitScript(NodeTraversal t, Node script) {\n */\n private void emitOptionalModuleExportsOverride(Node script,\n String moduleName) {\n+ if (!modulesWithExports.contains(moduleName)) {\n+ return;\n+ }\n \n Node moduleExportsProp = IR.getprop(IR.name(moduleName),\n IR.string(\"module$exports\"));\n@@ -225,6 +229,7 @@ private void visitModuleExports(Node prop) {\n Node exports = prop.getChildAtIndex(1);\n exports.putProp(Node.ORIGINALNAME_PROP, \"exports\");\n exports.setString(\"module$exports\");\n+ modulesWithExports.add(moduleName);\n }\n \n /**\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.CommandLineRunnerTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testTransformAMDAndProcessCJS" + }, + { + "className": " com.google.javascript.jscomp.CommandLineRunnerTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testProcessCJS" + }, + { + "className": " com.google.javascript.jscomp.ProcessCommonJSModulesTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testExports" + }, + { + "className": " com.google.javascript.jscomp.ProcessCommonJSModulesTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testModuleName" + }, + { + "className": " com.google.javascript.jscomp.ProcessCommonJSModulesTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testDash" + }, + { + "className": " com.google.javascript.jscomp.ProcessCommonJSModulesTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testVarRenaming" + }, + { + "className": " com.google.javascript.jscomp.ProcessCommonJSModulesTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testWithoutExports" + } + ], + "metrics": { + "chunks": 3, + "classes": 1, + "files": 1, + "linesAdd": 5, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 5, + "spreadAllLines": 100, + "spreadCodeOnly": 71 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "assignAdd", + "condBranIfAdd", + "mcAdd", + "retBranchAdd", + "varAdd" + ], + "repairPatterns": [ + "condBlockRetAdd", + "missComp" + ], + "repairTools": [ + "rtDynaMoth", + "rtNopol" + ], + "revisionId": "372eb11e44b8559004bfe78a5b4003caf0072135" + }, + { + "bugId": 25, + "changedFiles": { + "com/google/javascript/jscomp/TypeInference.java": { + "deletes": [ + [ + 1038 + ], + [ + 1059 + ], + [ + 1060 + ], + [ + 1061 + ] + ], + "inserts": [ + [ + 1036, + 1037 + ], + [ + 1055 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/TypeInference.java\n+++ b/src/com/google/javascript/jscomp/TypeInference.java\n@@ -1033,9 +1033,9 @@ private void updateTypeOfThisOnClosure(Node n, FunctionType fnType) {\n }\n \n private FlowScope traverseNew(Node n, FlowScope scope) {\n+ scope = traverseChildren(n, scope);\n \n Node constructor = n.getFirstChild();\n- scope = traverse(constructor, scope);\n JSType constructorType = constructor.getJSType();\n JSType type = null;\n if (constructorType != null) {\n@@ -1052,13 +1052,11 @@ private FlowScope traverseNew(Node n, FlowScope scope) {\n }\n if (ct != null && ct.isConstructor()) {\n type = ct.getInstanceType();\n+ backwardsInferenceFromCallSite(n, ct);\n }\n }\n }\n n.setJSType(type);\n- for (Node arg = constructor.getNext(); arg != null; arg = arg.getNext()) {\n- scope = traverse(arg, scope);\n- }\n return scope;\n }\n \n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.TypeInferenceTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected:<{[foo: (number|undefined)]}> but was:<{[]}>", + "methodName": "testBackwardsInferenceNew" + } + ], + "metrics": { + "chunks": 4, + "classes": 1, + "files": 1, + "linesAdd": 2, + "linesMod": 0, + "linesRem": 4, + "methods": 1, + "sizeInLines": 6, + "spreadAllLines": 22, + "spreadCodeOnly": 18 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "assignExpChange", + "assignRem", + "loopRem", + "mcAdd", + "mcRem" + ], + "repairPatterns": [ + "blockRemove", + "notClassified" + ], + "repairTools": [], + "revisionId": "2e904fcdc3bc09e3bff557fcfca383ba7e450095" + }, + { + "bugId": 27, + "changedFiles": { + "com/google/javascript/rhino/IR.java": { + "changes": [ + [ + 224 + ], + [ + 225 + ], + [ + 233 + ] + ], + "inserts": [ + [ + -1 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/rhino/IR.java\n+++ b/src/com/google/javascript/rhino/IR.java\n@@ -108,6 +108,9 @@ public static Node block(Node ... stmts) {\n return block;\n }\n \n+ private static Node blockUnchecked(Node stmt) {\n+ return new Node(Token.BLOCK, stmt);\n+ }\n \n public static Node script(Node ... stmts) {\n // TODO(johnlenz): finish setting up the SCRIPT node\n@@ -221,8 +224,8 @@ public static Node labelName(String name) {\n }\n \n public static Node tryFinally(Node tryBody, Node finallyBody) {\n- Preconditions.checkState(tryBody.isLabelName());\n- Preconditions.checkState(finallyBody.isLabelName());\n+ Preconditions.checkState(tryBody.isBlock());\n+ Preconditions.checkState(finallyBody.isBlock());\n Node catchBody = block().copyInformationFrom(tryBody);\n return new Node(Token.TRY, tryBody, catchBody, finallyBody);\n }\n@@ -230,7 +233,7 @@ public static Node tryFinally(Node tryBody, Node finallyBody) {\n public static Node tryCatch(Node tryBody, Node catchNode) {\n Preconditions.checkState(tryBody.isBlock());\n Preconditions.checkState(catchNode.isCatch());\n- Node catchBody = block(catchNode).copyInformationFrom(catchNode);\n+ Node catchBody = blockUnchecked(catchNode).copyInformationFrom(catchNode);\n return new Node(Token.TRY, tryBody, catchBody);\n }\n \n", + "failingTests": [ + { + "className": " com.google.javascript.rhino.IRTest", + "error": "java.lang.IllegalStateException", + "message": "", + "methodName": "testIssue727_1" + }, + { + "className": " com.google.javascript.rhino.IRTest", + "error": "java.lang.IllegalStateException", + "message": "", + "methodName": "testIssue727_2" + }, + { + "className": " com.google.javascript.rhino.IRTest", + "error": "java.lang.IllegalStateException", + "message": "", + "methodName": "testIssue727_3" + } + ], + "metrics": { + "chunks": 3, + "classes": 1, + "files": 1, + "linesAdd": 3, + "linesMod": 3, + "linesRem": 0, + "methods": 3, + "sizeInLines": 6, + "spreadAllLines": 120, + "spreadCodeOnly": 99 + }, + "observations": "A Node object is instantiated in the call. Adds new method and replace calls.", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "assignExpChange", + "mcParValChange", + "mcRepl", + "mdAdd", + "objInstAdd", + "retBranchAdd" + ], + "repairPatterns": [ + "copyPaste", + "wrongComp", + "wrongMethodRef" + ], + "repairTools": [], + "revisionId": "7a8983042131c5a9c2b5421ae42075cbb8ef1aeb" + }, + { + "bugId": 29, + "changedFiles": { + "com/google/javascript/jscomp/InlineObjectLiterals.java": { + "inserts": [ + [ + 156, + 157 + ], + [ + 172, + 173, + 174, + 175, + 176, + 177, + 178, + 179, + 180, + 181 + ], + [ + 215, + 216, + 217 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/InlineObjectLiterals.java\n+++ b/src/com/google/javascript/jscomp/InlineObjectLiterals.java\n@@ -154,6 +154,7 @@ private boolean isVarInlineForbidden(Var var) {\n */\n private boolean isInlinableObject(List refs) {\n boolean ret = false;\n+ Set validProperties = Sets.newHashSet();\n for (Reference ref : refs) {\n Node name = ref.getNode();\n Node parent = ref.getParent();\n@@ -178,6 +179,14 @@ private boolean isInlinableObject(List refs) {\n // We short-circuit this problem by bailing out if we see a reference\n // to a property that isn't defined on the object literal. This\n // isn't a perfect algorithm, but it should catch most cases.\n+ String propName = parent.getLastChild().getString();\n+ if (!validProperties.contains(propName)) {\n+ if (NodeUtil.isVarOrSimpleAssignLhs(parent, gramps)) {\n+ validProperties.add(propName);\n+ } else {\n+ return false;\n+ }\n+ }\n continue;\n }\n \n@@ -213,6 +222,7 @@ private boolean isInlinableObject(List refs) {\n return false;\n }\n \n+ validProperties.add(child.getString());\n \n Node childVal = child.getFirstChild();\n // Check if childVal is the parent of any of the passed in\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.InlineObjectLiteralsTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testObject10" + }, + { + "className": " com.google.javascript.jscomp.InlineObjectLiteralsTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testObject12" + }, + { + "className": " 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+ ], + "repairTools": [ + "rtDynaMoth", + "rtNopol" + ], + "revisionId": "6924915efab89f921fd0779fe200fecc1bf80847" + }, + { + "bugId": 30, + "changedFiles": { + "com/google/javascript/jscomp/FlowSensitiveInlineVariables.java": { + "changes": [ + [ + 157 + ] + ] + }, + "com/google/javascript/jscomp/MustBeReachingVariableDef.java": { + "changes": [ + [ + 396 + ] + ], + "inserts": [ + [ + -1 + ], + [ + 398 + ], + [ + 399 + ], + [ + 430, + 431 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/FlowSensitiveInlineVariables.java\n+++ b/src/com/google/javascript/jscomp/FlowSensitiveInlineVariables.java\n@@ -154,7 +154,7 @@ public void exitScope(NodeTraversal t) {}\n \n @Override\n public void process(Node externs, Node root) {\n- (new NodeTraversal(compiler, this)).traverse(root);\n+ (new NodeTraversal(compiler, this)).traverseRoots(externs, root);\n }\n \n @Override\n--- a/src/com/google/javascript/jscomp/MustBeReachingVariableDef.java\n+++ b/src/com/google/javascript/jscomp/MustBeReachingVariableDef.java\n@@ -68,6 +68,7 @@\n private static class Definition {\n final Node node;\n final Set depends = Sets.newHashSet();\n+ private boolean unknownDependencies = false;\n \n Definition(Node node) {\n this.node = node;\n@@ -393,9 +394,13 @@ private void computeDependence(final Definition def, Node rValue) {\n new AbstractCfgNodeTraversalCallback() {\n @Override\n public void visit(NodeTraversal t, Node n, Node parent) {\n- if (n.isName() && jsScope.isDeclared(n.getString(), true)) {\n+ if (n.isName()) {\n Var dep = jsScope.getVar(n.getString());\n+ if (dep == null) {\n+ def.unknownDependencies = true;\n+ } else {\n def.depends.add(dep);\n+ }\n }\n }\n });\n@@ -427,6 +432,9 @@ boolean dependsOnOuterScopeVars(String name, Node useNode) {\n GraphNode n = getCfg().getNode(useNode);\n FlowState state = n.getAnnotation();\n Definition def = state.getIn().reachingDef.get(jsScope.getVar(name));\n+ if (def.unknownDependencies) {\n+ return true;\n+ }\n \n for (Var s : def.depends) {\n if (s.scope != jsScope) {\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.FlowSensitiveInlineVariablesTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testInlineAcrossSideEffect1" + }, + { + "className": " com.google.javascript.jscomp.FlowSensitiveInlineVariablesTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testCanInlineAcrossNoSideEffect" + }, + { + "className": " com.google.javascript.jscomp.FlowSensitiveInlineVariablesTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testIssue698" + } + ], + "metrics": { + "chunks": 6, + "classes": 3, + "files": 2, + "linesAdd": 8, + "linesMod": 2, + "linesRem": 0, + "methods": 3, + "sizeInLines": 10, + "spreadAllLines": 358, + "spreadCodeOnly": 237 + }, + "observations": "Adds a new class attribute with its initialization.", + "program": 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so that they\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.CommandLineRunnerTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testDependencySortingWhitespaceMode" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 0, + "linesRem": 1, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condExpRed" + ], + "repairPatterns": [ + "expLogicReduce", + "singleLine" + ], + "repairTools": [ + "rtDynaMoth", + "rtJAID", + "rtNopol", + "rtssFix" + ], + "revisionId": "0a670cb51fd56c12c19f98884c9513792ebc3f76" + }, + { + "bugId": 32, + "changedFiles": { + "com/google/javascript/jscomp/parsing/JsDocInfoParser.java": { + "deletes": [ + [ + 1414 + ], + [ + 1415 + ], + [ + 1416 + ] + ], + "inserts": [ + [ + 1331, + 1332, + 1333, + 1334, + 1335, + 1336, 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Because this case is rare, it's easier\n // to do this here than in the tokenizer.\n+ int lineStartChar = -1;\n \n do {\n switch (token) {\n case STAR:\n if (ignoreStar) {\n // Mark the position after the star as the new start of the line.\n+ lineStartChar = stream.getCharno() + 1;\n } else {\n // The star is part of the comment.\n if (builder.length() > 0) {\n@@ -1379,6 +1381,7 @@ private ExtractionInfo extractMultilineTextualBlock(JsDocToken token,\n }\n \n ignoreStar = true;\n+ lineStartChar = 0;\n token = next();\n continue;\n \n@@ -1386,7 +1389,19 @@ private ExtractionInfo extractMultilineTextualBlock(JsDocToken token,\n ignoreStar = false;\n state = State.SEARCHING_ANNOTATION;\n \n+ boolean isEOC = token == JsDocToken.EOC;\n+ if (!isEOC) {\n+ if (lineStartChar != -1 && option == WhitespaceOption.PRESERVE) {\n+ int numSpaces = stream.getCharno() - lineStartChar;\n+ for (int i = 0; i < numSpaces; i++) {\n+ builder.append(' ');\n+ }\n+ lineStartChar = -1;\n+ } else if (builder.length() > 0) {\n // All tokens must be separated by a space.\n+ builder.append(' ');\n+ }\n+ }\n \n if (token == JsDocToken.EOC ||\n token == JsDocToken.EOF ||\n@@ -1411,9 +1426,6 @@ private ExtractionInfo extractMultilineTextualBlock(JsDocToken token,\n return new ExtractionInfo(multilineText, token);\n }\n \n- if (builder.length() > 0) {\n- builder.append(' ');\n- }\n builder.append(toString(token));\n \n line = stream.getRemainingJSDocLine();\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.IntegrationTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected: scope) {\n @Override\n public void matchConstraint(ObjectType constraintObj) {\n // We only want to match contraints on anonymous types.\n+ if (hasReferenceName()) {\n+ return;\n+ }\n \n // Handle the case where the constraint object is a record type.\n //\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.TypeCheckTest", + "error": "junit.framework.AssertionFailedError", + "message": "unexpected warnings(s):", + "methodName": "testIssue700" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 3, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 3, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condBranIfAdd", + "mcAdd", + "retBranchAdd" + ], + "repairPatterns": [ + "condBlockRetAdd" + ], + "repairTools": [ + "rtCardumen", + "rtDynaMoth", + "rtJAID", + "rtNopol" + ], + "revisionId": "382422adae8e9f07fc23c94089c0ebe08a2174bc" + }, + { + "bugId": 28, + "changedFiles": { + "com/google/javascript/jscomp/InlineCostEstimator.java": { + "inserts": [ + [ + -1 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/InlineCostEstimator.java\n+++ b/src/com/google/javascript/jscomp/InlineCostEstimator.java\n@@ -99,5 +99,9 @@ void addIdentifier(String identifier) {\n * Constants (true, false, null) are considered basically free,\n * because it's likely that they will get folded when we're done.\n */\n+ @Override\n+ void addConstant(String newcode) {\n+ add(\"0\");\n+ }\n }\n }\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.InlineCostEstimatorTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<1> but was:<4>", + "methodName": "testCost" + }, + { + "className": " com.google.javascript.jscomp.InlineFunctionsTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testIssue728" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 4, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 4, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Overrides the addConstant method. Replaces method calls.", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "mcAdd", + "mdAdd", + "mdOverride" + ], + "repairPatterns": [ + "notClassified", + "wrongComp" + ], + "repairTools": [ + "rtDynaMoth", + "rtNopol" + ], + "revisionId": "59dbb7a28680caad08ddb1658123fe0cbb1ae689" + }, + { + "bugId": 34, + "changedFiles": { + "com/google/javascript/jscomp/CodeGenerator.java": { + "changes": [ + [ + 122 + ], + [ + 123 + ], + [ + 124 + ], + [ + 754 + ] + ] + }, + "com/google/javascript/jscomp/CodePrinter.java": { + "changes": [ + [ + 334 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/CodeGenerator.java\n+++ b/src/com/google/javascript/jscomp/CodeGenerator.java\n@@ -119,9 +119,7 @@ void add(Node n, Context context) {\n cc.addOp(opstr, true);\n addExpr(last, p, rhsContext);\n } else {\n- addExpr(first, p, context);\n- cc.addOp(opstr, true);\n- addExpr(last, p + 1, rhsContext);\n+ unrollBinaryOperator(n, type, opstr, context, rhsContext, p, p + 1);\n }\n return;\n }\n@@ -751,7 +749,7 @@ private void unrollBinaryOperator(\n Node current = firstNonOperator;\n do {\n current = current.getParent();\n- cc.listSeparator();\n+ cc.addOp(opStr, true);\n addExpr(current.getFirstChild().getNext(), rightPrecedence, rhsContext);\n } while (current != n);\n }\n--- a/src/com/google/javascript/jscomp/CodePrinter.java\n+++ b/src/com/google/javascript/jscomp/CodePrinter.java\n@@ -331,7 +331,7 @@ void endCaseBody() {\n @Override\n void appendOp(String op, boolean binOp) {\n if (binOp) {\n- if (getLastChar() != ' ') {\n+ if (getLastChar() != ' ' && op.charAt(0) != ',') {\n append(\" \");\n }\n append(op);\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.CodePrinterTest", + "error": "java.lang.StackOverflowError", + "message": "", + "methodName": "testManyAdds" + } + ], + "metrics": { + "chunks": 3, + "classes": 2, + "files": 2, + "linesAdd": 0, + "linesMod": 3, + "linesRem": 2, + "methods": 3, + "sizeInLines": 5, + "spreadAllLines": 629, + "spreadCodeOnly": 505 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condExpExpand", + "mcAdd", + "mcParAdd", + "mcRepl", + "varReplVar" + ], + "repairPatterns": [ + "expLogicExpand", + "wrongMethodRef", + "wrongVarRef" + ], + "repairTools": [], + "revisionId": "87b154f89cba3c67045cd7a783b79231d0630a4c" + }, + { + "bugId": 35, + "changedFiles": { + "com/google/javascript/jscomp/TypeInference.java": { + "changes": [ + [ + 1121 + ], + [ + 1122 + ], + [ + 1123 + ], + [ + 1124 + ], + [ + 1125 + ], + [ + 1126 + ], + [ + 1127 + ], + [ + 1128 + ], + [ + 1129 + ], + [ + 1130 + ], + [ + 1131 + ], + [ + 1132 + ], + [ + 1133 + ], + [ + 1134 + ], + [ + 1135 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/TypeInference.java\n+++ b/src/com/google/javascript/jscomp/TypeInference.java\n@@ -1118,21 +1118,8 @@ private void inferPropertyTypesToMatchConstraint(\n \n ObjectType constraintObj =\n ObjectType.cast(constraint.restrictByNotNullOrUndefined());\n- if (constraintObj != null && constraintObj.isRecordType()) {\n- ObjectType objType = ObjectType.cast(type.restrictByNotNullOrUndefined());\n- if (objType != null) {\n- for (String prop : constraintObj.getOwnPropertyNames()) {\n- JSType propType = constraintObj.getPropertyType(prop);\n- if (!objType.isPropertyTypeDeclared(prop)) {\n- JSType typeToInfer = propType;\n- if (!objType.hasProperty(prop)) {\n- typeToInfer =\n- getNativeType(VOID_TYPE).getLeastSupertype(propType);\n- }\n- objType.defineInferredProperty(prop, typeToInfer, null);\n- }\n- }\n- }\n+ if (constraintObj != null) {\n+ type.matchConstraint(constraintObj);\n }\n }\n \n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.TypeCheckTest", + "error": "junit.framework.AssertionFailedError", + "message": "unexpected warnings(s):", + "methodName": "testIssue669" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 2, + "linesRem": 13, + "methods": 1, + "sizeInLines": 15, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Simplifies an existent null check. It's a kind of conditional block replacement.", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "assignRem", + "condBranRem", + "condExpRed", + "loopRem", + "mcAdd", + "mcRem", + "varRem" + ], + "repairPatterns": [ + "condBlockRem", + "expLogicReduce" + ], + "repairTools": [ + "rtNopol" + ], + "revisionId": "22784dc96c391b01692ce686eb93b9aa0ef74ede" + }, + { + "bugId": 37, + "changedFiles": { + "com/google/javascript/jscomp/NodeTraversal.java": { + "changes": [ + [ + 541 + ] + ] + }, + "com/google/javascript/jscomp/parsing/IRFactory.java": { + "inserts": [ + [ + 667, + 668, + 669, + 670 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/NodeTraversal.java\n+++ b/src/com/google/javascript/jscomp/NodeTraversal.java\n@@ -538,7 +538,7 @@ private void traverseFunction(Node n, Node parent) {\n \n // Body\n Preconditions.checkState(body.getNext() == null &&\n- body.isBlock());\n+ body.isBlock(), body);\n traverseBranch(body, n);\n \n popScope();\n--- a/src/com/google/javascript/jscomp/parsing/IRFactory.java\n+++ b/src/com/google/javascript/jscomp/parsing/IRFactory.java\n@@ -664,9 +664,13 @@ Node processFunctionNode(FunctionNode functionNode) {\n node.addChildToBack(lp);\n \n Node bodyNode = transform(functionNode.getBody());\n+ if (!bodyNode.isBlock()) {\n // When in ideMode Rhino tries to parse some constructs the compiler\n // doesn't support, repair it here. see Rhino's\n // Parser#parseFunctionBodyExpr.\n+ Preconditions.checkState(config.isIdeMode);\n+ bodyNode = IR.block();\n+ }\n parseDirectives(bodyNode);\n node.addChildToBack(bodyNode);\n return node;\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.IntegrationTest", + "error": "java.lang.RuntimeException", + "message": "java.lang.RuntimeException: INTERNAL COMPILER ERROR.", + "methodName": "testIncompleteFunction" + } + ], + "metrics": { + "chunks": 3, + "classes": 2, + "files": 2, + "linesAdd": 4, + "linesMod": 1, + "linesRem": 0, + "methods": 2, + "sizeInLines": 5, + "spreadAllLines": 3, + "spreadCodeOnly": 0 + }, + "observations": "Replaces method call by overloaded method with extra parameters.", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "assignAdd", + "condBranIfAdd", + "mcAdd", + "mcParAdd", + "mcRepl" + ], + "repairPatterns": [ + "condBlockOthersAdd", + "wrongMethodRef" + ], + "repairTools": [], + "revisionId": "7e93d521cb67ce33018315234fafe8a5aa30ee1e" + }, + { + "bugId": 36, + "changedFiles": { + "com/google/javascript/jscomp/InlineVariables.java": { + "inserts": [ + [ + 572, + 573, + 574, + 575 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/InlineVariables.java\n+++ b/src/com/google/javascript/jscomp/InlineVariables.java\n@@ -572,6 +572,9 @@ private boolean canInline(\n \n // issue 668: Don't inline singleton getter methods\n // calls as this confused class removing logic.\n+ if (convention.getSingletonGetterClassName(callNode) != null) {\n+ return false;\n+ }\n }\n }\n \n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.IntegrationTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testSingletonGetter1" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 3, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 3, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condBranIfAdd", + "mcAdd", + "retBranchAdd" + ], + "repairPatterns": [ + "condBlockRetAdd", + "missNullCheckN" + ], + "repairTools": [ + "rtDynaMoth", + "rtNopol" + ], + "revisionId": "be397ee0d0be2aad8f71d12f097b17563866445a" + }, + { + "bugId": 39, + "changedFiles": { + "com/google/javascript/rhino/jstype/PrototypeObjectType.java": { + "changes": [ + [ + 380 + ], + [ + 383 + ], + [ + 394 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/rhino/jstype/PrototypeObjectType.java\n+++ b/src/com/google/javascript/rhino/jstype/PrototypeObjectType.java\n@@ -377,10 +377,10 @@ String toStringHelper(boolean forAnnotations) {\n \n sb.append(property);\n sb.append(\": \");\n- sb.append(getPropertyType(property).toString());\n+ sb.append(getPropertyType(property).toStringHelper(forAnnotations));\n \n ++i;\n- if (i == MAX_PRETTY_PRINTED_PROPERTIES) {\n+ if (!forAnnotations && i == MAX_PRETTY_PRINTED_PROPERTIES) {\n sb.append(\", ...\");\n break;\n }\n@@ -391,7 +391,7 @@ String toStringHelper(boolean forAnnotations) {\n prettyPrint = true;\n return sb.toString();\n } else {\n- return \"{...}\";\n+ return forAnnotations ? \"?\" : \"{...}\";\n }\n }\n \n", + "failingTests": [ + { + "className": " com.google.javascript.rhino.jstype.RecordTypeTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected:<{loop: [?], number: number, st...> but was:<{loop: [{...}], number: number, st...>", + "methodName": "testRecursiveRecord" + }, + { + "className": " com.google.javascript.rhino.jstype.RecordTypeTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected:<...number, a4: number, [a5: number, a6: number]}> but was:<...number, a4: number, [...]}>", + "methodName": "testLongToString" + } + ], + "metrics": { + "chunks": 3, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 3, + "linesRem": 0, + "methods": 1, + "sizeInLines": 3, + "spreadAllLines": 12, + "spreadCodeOnly": 9 + }, + "observations": "If-else implicit in \"exp?a:b\" construct", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condBranIfElseAdd", + "condExpExpand", + "mcParAdd", + "mcRepl", + "retExpChange" + ], + "repairPatterns": [ + "expLogicExpand", + "wrapsIfElse", + "wrongMethodRef" + ], + "repairTools": [], + "revisionId": "d577973fb378dfe0d05991ec0dfa6c1f40e574ee" + }, + { + "bugId": 45, + "changedFiles": { + "com/google/javascript/jscomp/RemoveUnusedVars.java": { + "changes": [ + [ + 741 + ], + [ + 904 + ] + ], + "inserts": [ + [ + 731, + 732 + ], + [ + 739 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/RemoveUnusedVars.java\n+++ b/src/com/google/javascript/jscomp/RemoveUnusedVars.java\n@@ -729,6 +729,7 @@ private void interpretAssigns() {\n assignedToUnknownValue = true;\n }\n \n+ boolean maybeEscaped = false;\n for (Assign assign : assignsByVar.get(var)) {\n if (assign.isPropertyAssign) {\n hasPropertyAssign = true;\n@@ -736,9 +737,12 @@ private void interpretAssigns() {\n assign.assignNode.getLastChild(), true)) {\n assignedToUnknownValue = true;\n }\n+ if (assign.maybeAliased) {\n+ maybeEscaped = true;\n+ }\n }\n \n- if (assignedToUnknownValue && hasPropertyAssign) {\n+ if ((assignedToUnknownValue || maybeEscaped) && hasPropertyAssign) {\n changes = markReferencedVar(var) || changes;\n maybeUnreferenced.remove(current);\n current--;\n@@ -901,7 +905,7 @@ void apply() {\n this.nameNode = nameNode;\n this.isPropertyAssign = isPropertyAssign;\n \n- this.maybeAliased = !assignNode.getParent().isExprResult();\n+ this.maybeAliased = NodeUtil.isExpressionResultUsed(assignNode);\n this.mayHaveSecondarySideEffects =\n maybeAliased ||\n NodeUtil.mayHaveSideEffects(assignNode.getFirstChild()) ||\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.RemoveUnusedVarsTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testIssue618_1" + } + ], + "metrics": { + "chunks": 4, + "classes": 2, + "files": 1, + "linesAdd": 4, + "linesMod": 2, + "linesRem": 0, + "methods": 2, + "sizeInLines": 6, + "spreadAllLines": 171, + "spreadCodeOnly": 107 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "assignAdd", + "assignExpChange", + "condBranIfAdd", + "condExpExpand", + "condExpMod", + "mcAdd", + "mcRem", + "varAdd" + ], + "repairPatterns": [ + "condBlockOthersAdd", + "expLogicExpand", + "initFix", + "wrongMethodRef" + ], + "repairTools": [ + "rtCardumen", + "rtDynaMoth", + "rtNopol" + ], + "revisionId": "6aa71f116df0102a98c463f471ad8ddd4dba01f8" + }, + { + "bugId": 38, + "changedFiles": { + "com/google/javascript/jscomp/CodeConsumer.java": { + "changes": [ + [ + 245 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/CodeConsumer.java\n+++ b/src/com/google/javascript/jscomp/CodeConsumer.java\n@@ -242,7 +242,7 @@ void addNumber(double x) {\n // x--4 (which is a syntax error).\n char prev = getLastChar();\n boolean negativeZero = isNegativeZero(x);\n- if (x < 0 && prev == '-') {\n+ if ((x < 0 || negativeZero) && prev == '-') {\n add(\" \");\n }\n \n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.CodePrinterTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected: but was:", + "methodName": "testMinusNegativeZero" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Parentesis added has no effect on expression evaluation, so a conditional expression expansion was considered only.", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condExpExpand" + ], + "repairPatterns": [ + "expLogicExpand", + "singleLine" + ], + "repairTools": [ + "rtNopol" + ], + "revisionId": "8cf08115c6b252f8c6b54348a4089dccc45a01fb" + }, + { + "bugId": 40, + "changedFiles": { + "com/google/javascript/jscomp/NameAnalyzer.java": { + "changes": [ + [ + 635 + ] + ], + "deletes": [ + [ + 636 + ], + [ + 639 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/NameAnalyzer.java\n+++ b/src/com/google/javascript/jscomp/NameAnalyzer.java\n@@ -632,11 +632,9 @@ public void visit(NodeTraversal t, Node n, Node parent) {\n Node nameNode = n.getFirstChild();\n NameInformation ns = createNameInformation(t, nameNode, n);\n if (ns != null && ns.onlyAffectsClassDef) {\n- JsName name = getName(ns.name, false);\n- if (name != null) {\n+ JsName name = getName(ns.name, true);\n refNodes.add(new ClassDefiningFunctionNode(\n name, n, parent, parent.getParent()));\n- }\n }\n }\n }\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.IntegrationTest", + "error": "java.lang.RuntimeException", + "message": "java.lang.RuntimeException: INTERNAL COMPILER ERROR.", + "methodName": "testIssue284" + }, + { + "className": " com.google.javascript.jscomp.NameAnalyzerTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testIssue284" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 2, + "methods": 1, + "sizeInLines": 3, + "spreadAllLines": 2, + "spreadCodeOnly": 2 + }, + "observations": "Removed a null check, maintaining the branch code.", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condBranRem", + "mcParValChange" + ], + "repairPatterns": [ + "constChange", + "unwrapIfElse" + ], + "repairTools": [ + "rtCardumen", + "rtDynaMoth", + "rtJAID", + "rtNopol", + "rtssFix" + ], + "revisionId": "6ebc0c3d7d4da7d2cf95f53d4ea790e89d3abc7a" + }, + { + "bugId": 42, + "changedFiles": { + "com/google/javascript/jscomp/parsing/IRFactory.java": { + "inserts": [ + [ + 568, + 569, + 570 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/parsing/IRFactory.java\n+++ b/src/com/google/javascript/jscomp/parsing/IRFactory.java\n@@ -565,8 +565,15 @@ Node processExpressionStatement(ExpressionStatement statementNode) {\n \n @Override\n Node processForInLoop(ForInLoop loopNode) {\n+ if (loopNode.isForEach()) {\n+ errorReporter.error(\n+ \"unsupported language extension: for each\",\n+ sourceName,\n+ loopNode.getLineno(), \"\", 0);\n \n // Return the bare minimum to put the AST in a valid state.\n+ return newNode(Token.EXPR_RESULT, Node.newNumber(0));\n+ }\n return newNode(\n Token.FOR,\n transform(loopNode.getIterator()),\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.parsing.ParserTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testForEach" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 7, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 7, + "spreadAllLines": 2, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condBranIfAdd", + "mcAdd", + "retBranchAdd" + ], + "repairPatterns": [ + "condBlockRetAdd", + "missComp" + ], + "repairTools": [], + "revisionId": "fb01427a445ebfeb3af5e220a98ccaced339b73e" + }, + { + "bugId": 41, + "changedFiles": { + "com/google/javascript/jscomp/FunctionTypeBuilder.java": { + "inserts": [ + [ + 290, + 291, + 292, + 293 + ], + [ + 481, + 482, + 483, + 484 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/FunctionTypeBuilder.java\n+++ b/src/com/google/javascript/jscomp/FunctionTypeBuilder.java\n@@ -289,6 +289,9 @@ FunctionTypeBuilder inferFromOverriddenFunction(\n }\n \n // Clone any remaining params that aren't in the function literal.\n+ while (oldParams.hasNext()) {\n+ paramBuilder.newParameterFromNode(oldParams.next());\n+ }\n \n parametersNode = paramBuilder.build();\n }\n@@ -480,6 +483,12 @@ FunctionTypeBuilder inferParameterTypes(@Nullable Node argsParent,\n }\n \n // Copy over any old parameters that aren't in the param list.\n+ if (!isVarArgs) {\n+ while (oldParameterType != null && !isVarArgs) {\n+ builder.newParameterFromNode(oldParameterType);\n+ oldParameterType = oldParameterType.getNext();\n+ }\n+ }\n \n if (templateTypeName != null && !foundTemplateType) {\n reportError(TEMPLATE_TYPE_EXPECTED, fnName);\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.LooseTypeCheckTest", + "error": "junit.framework.AssertionFailedError", + "message": "unexpected warnings(s):", + "methodName": "testMethodInference6" + }, + { + "className": " com.google.javascript.jscomp.TypeCheckTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected:<[actual parameter 2 of Bar.prototype.add does not match formal parameter", + "methodName": "testIssue368" + }, + { + "className": " com.google.javascript.jscomp.TypeCheckTest", + "error": "junit.framework.AssertionFailedError", + "message": "unexpected warnings(s):", + "methodName": "testMethodInference6" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 9, + "linesMod": 0, + "linesRem": 0, + "methods": 2, + "sizeInLines": 9, + "spreadAllLines": 191, + "spreadCodeOnly": 138 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "assignAdd", + "condBranIfAdd", + "loopAdd", + "mcAdd" + ], + "repairPatterns": [ + "condBlockOthersAdd", + "missComp", + "missNullCheckN" + ], + "repairTools": [], + "revisionId": "00b1517c53912ac6843c257c0a6ead1176e8c5ee" + }, + { + "bugId": 44, + "changedFiles": { + "com/google/javascript/jscomp/CodeConsumer.java": { + "inserts": [ + [ + 194, + 195, + 196, + 197, + 198, + 199 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/CodeConsumer.java\n+++ b/src/com/google/javascript/jscomp/CodeConsumer.java\n@@ -191,11 +191,13 @@ void add(String newcode) {\n // need space to separate. This is not pretty printing.\n // For example: \"return foo;\"\n append(\" \");\n+ } else if (c == '/' && getLastChar() == '/') {\n // Do not allow a forward slash to appear after a DIV.\n // For example,\n // REGEXP DIV REGEXP\n // is valid and should print like\n // / // / /\n+ append(\" \");\n }\n \n append(newcode);\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.CodePrinterTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected: but was:", + "methodName": "testIssue620" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 2, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 2, + "spreadAllLines": 5, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condBranIfElseAdd", + "mcAdd" + ], + "repairPatterns": [ + "condBlockOthersAdd" + ], + "repairTools": [], + "revisionId": "64bb2291f9a9bbab67d865dffe603f8a0df8ef30" + }, + { + "bugId": 43, + "changedFiles": { + "com/google/javascript/jscomp/TypedScopeCreator.java": { + "inserts": [ + [ + -1 + ], + [ + 545, + 546, + 547 + ], + [ + 580 + ], + [ + 581 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/TypedScopeCreator.java\n+++ b/src/com/google/javascript/jscomp/TypedScopeCreator.java\n@@ -390,50 +390,51 @@ private void identifyNameNode(\n private JSType getNativeType(JSTypeNative nativeType) {\n return typeRegistry.getNativeType(nativeType);\n }\n \n private abstract class AbstractScopeBuilder\n implements NodeTraversal.Callback {\n \n /**\n * The scope that we're builidng.\n */\n final Scope scope;\n \n private final List deferredSetTypes =\n Lists.newArrayList();\n \n /**\n * Functions that we found in the global scope and not in externs.\n */\n private final List nonExternFunctions = Lists.newArrayList();\n \n /**\n * Object literals with a @lends annotation aren't analyzed until we\n * reach the root of the statement they're defined in.\n *\n * This ensures that if there are any @lends annotations on the object\n * literals, the type on the @lends annotation resolves correctly.\n *\n * For more information, see\n * http://code.google.com/p/closure-compiler/issues/detail?id=314\n */\n+ private List lentObjectLiterals = null;\n \n /**\n * Type-less stubs.\n *\n * If at the end of traversal, we still don't have types for these\n * stubs, then we should declare UNKNOWN types.\n */\n private final List stubDeclarations =\n Lists.newArrayList();\n \n /**\n * The current source file that we're in.\n */\n private String sourceName = null;\n \n /**\n * The InputId of the current node.\n */\n private InputId inputId;\n \n@@ -498,90 +499,106 @@ public final boolean shouldTraverse(NodeTraversal t, Node n,\n public void visit(NodeTraversal t, Node n, Node parent) {\n inputId = t.getInputId();\n attachLiteralTypes(t, n);\n \n switch (n.getType()) {\n case Token.CALL:\n checkForClassDefiningCalls(t, n, parent);\n checkForCallingConventionDefiningCalls(n, delegateCallingConventions);\n break;\n \n case Token.FUNCTION:\n if (t.getInput() == null || !t.getInput().isExtern()) {\n nonExternFunctions.add(n);\n }\n \n // Hoisted functions are handled during pre-traversal.\n if (!NodeUtil.isHoistedFunctionDeclaration(n)) {\n defineFunctionLiteral(n, parent);\n }\n break;\n \n case Token.ASSIGN:\n // Handle initialization of properties.\n Node firstChild = n.getFirstChild();\n if (firstChild.isGetProp() &&\n firstChild.isQualifiedName()) {\n maybeDeclareQualifiedName(t, n.getJSDocInfo(),\n firstChild, n, firstChild.getNext());\n }\n break;\n \n case Token.CATCH:\n defineCatch(n, parent);\n break;\n \n case Token.VAR:\n defineVar(n, parent);\n break;\n \n case Token.GETPROP:\n // Handle stubbed properties.\n if (parent.isExprResult() &&\n n.isQualifiedName()) {\n maybeDeclareQualifiedName(t, n.getJSDocInfo(), n, parent, null);\n }\n break;\n }\n \n // Analyze any @lends object literals in this statement.\n+ if (n.getParent() != null && NodeUtil.isStatement(n) &&\n+ lentObjectLiterals != null) {\n+ for (Node objLit : lentObjectLiterals) {\n+ defineObjectLiteral(objLit);\n+ }\n+ lentObjectLiterals.clear();\n+ }\n }\n \n private void attachLiteralTypes(NodeTraversal t, Node n) {\n switch (n.getType()) {\n case Token.NULL:\n n.setJSType(getNativeType(NULL_TYPE));\n break;\n \n case Token.VOID:\n n.setJSType(getNativeType(VOID_TYPE));\n break;\n \n case Token.STRING:\n // Defer keys to the Token.OBJECTLIT case\n if (!NodeUtil.isObjectLitKey(n, n.getParent())) {\n n.setJSType(getNativeType(STRING_TYPE));\n }\n break;\n \n case Token.NUMBER:\n n.setJSType(getNativeType(NUMBER_TYPE));\n break;\n \n case Token.TRUE:\n case Token.FALSE:\n n.setJSType(getNativeType(BOOLEAN_TYPE));\n break;\n \n case Token.REGEXP:\n n.setJSType(getNativeType(REGEXP_TYPE));\n break;\n \n case Token.OBJECTLIT:\n+ JSDocInfo info = n.getJSDocInfo();\n+ if (info != null &&\n+ info.getLendsName() != null) {\n+ if (lentObjectLiterals == null) {\n+ lentObjectLiterals = Lists.newArrayList();\n+ }\n+ lentObjectLiterals.add(n);\n+ } else {\n defineObjectLiteral(n);\n+ }\n break;\n \n // NOTE(nicksantos): If we ever support Array tuples,\n // we will need to put ARRAYLIT here as well.\n }\n }\n \n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.TypeCheckTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected:<[inconsistent return type", + "methodName": "testLends10" + }, + { + "className": " com.google.javascript.jscomp.TypeCheckTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected:<[inconsistent return type", + "methodName": "testLends11" + } + ], + "metrics": { + "chunks": 4, + "classes": 1, + "files": 1, + "linesAdd": 17, + "linesMod": 0, + "linesRem": 0, + "methods": 2, + "sizeInLines": 17, + "spreadAllLines": 161, + "spreadCodeOnly": 108 + }, + "observations": "", + "program": 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getLeastSupertype(JSType that) {\n- if (!that.isRecordType()) {\n- return super.getLeastSupertype(that);\n- }\n- RecordTypeBuilder builder = new RecordTypeBuilder(registry);\n- for (String property : properties.keySet()) {\n- if (that.toMaybeRecordType().hasProperty(property) &&\n- that.toMaybeRecordType().getPropertyType(property).isEquivalentTo(\n- getPropertyType(property))) {\n- builder.addProperty(property, getPropertyType(property),\n- getPropertyNode(property));\n- }\n- }\n- return builder.build();\n- }\n JSType getGreatestSubtypeHelper(JSType that) {\n if (that.isRecordType()) {\n RecordType thatRecord = that.toMaybeRecordType();\n", + "failingTests": [ + { + "className": " com.google.javascript.rhino.jstype.JSTypeTest", + "error": "junit.framework.AssertionFailedError", + "message": "Expected: ({a: number, b: string}|{b: string, c: string, e: number})", + "methodName": "testRecordTypeLeastSuperType2" + }, + { + "className": " com.google.javascript.rhino.jstype.JSTypeTest", + "error": "junit.framework.AssertionFailedError", + "message": "Expected: ({a: number, b: string}|{d: number, e: string, f: string})", + "methodName": "testRecordTypeLeastSuperType3" + }, + { + "className": " com.google.javascript.rhino.jstype.RecordTypeTest", + "error": "junit.framework.AssertionFailedError", + "message": "Expected: ({a: number, b: number}|{b: number, c: number})", + "methodName": "testSupAndInf" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 0, + "linesRem": 16, + "methods": 1, + "sizeInLines": 16, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Removes Overriding method. Adds and initializes local variable.", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "assignRem", + "condBranRem", + "loopRem", + "mcRem", + "mdOverride", + "mdRem", + "objInstRem", + "retRem", + "varRem" + ], + "repairPatterns": [ + "blockRemove", + "condBlockRem", + "wrongComp" + ], + "repairTools": [ + "rtCardumen", + "rtDynaMoth" + ], + "revisionId": "4a1a31c6a50a0fbe25fa33277909bd51f1deb8e9" + }, + { + "bugId": 47, + "changedFiles": { + "com/google/debugging/sourcemap/SourceMapConsumerV3.java": { + "changes": [ + [ + 489 + ], + [ + 490 + ] + ] + }, + "com/google/javascript/jscomp/SourceMap.java": { + "changes": [ + [ + 141 + ] + ], + "inserts": [ + [ + 133, + 134, + 135, + 136, + 137, + 138, + 139 + ] + ] + } + }, + "diff": "--- a/src/com/google/debugging/sourcemap/SourceMapConsumerV3.java\n+++ b/src/com/google/debugging/sourcemap/SourceMapConsumerV3.java\n@@ -486,8 +486,8 @@ private OriginalMapping getOriginalMappingForEntry(Entry entry) {\n // Adjust the line/column here to be start at 1.\n Builder x = OriginalMapping.newBuilder()\n .setOriginalFile(sources[entry.getSourceFileId()])\n- .setLineNumber(entry.getSourceLine())\n- .setColumnPosition(entry.getSourceColumn());\n+ .setLineNumber(entry.getSourceLine() + 1)\n+ .setColumnPosition(entry.getSourceColumn() + 1);\n if (entry.getNameId() != UNMAPPED) {\n x.setIdentifier(names[entry.getNameId()]);\n }\n--- a/src/com/google/javascript/jscomp/SourceMap.java\n+++ b/src/com/google/javascript/jscomp/SourceMap.java\n@@ -135,10 +135,15 @@ public void addMapping(\n // zero based.\n // We don't change this for the v1 or v2 source maps but for\n // v3 we make them both 0 based.\n+ int lineBaseOffset = 1;\n+ if (generator instanceof SourceMapGeneratorV1\n+ || generator instanceof SourceMapGeneratorV2) {\n+ lineBaseOffset = 0;\n+ }\n \n generator.addMapping(\n sourceFile, originalName,\n- new FilePosition(node.getLineno(), node.getCharno()),\n+ new FilePosition(node.getLineno() - lineBaseOffset, node.getCharno()),\n outputStartPosition, outputEndPosition);\n }\n \n", + "failingTests": [ + { + "className": " com.google.debugging.sourcemap.SourceMapGeneratorV3Test", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<5> but was:<4>", + "methodName": "testParseSourceMetaMap" + }, + { + "className": " com.google.debugging.sourcemap.SourceMapGeneratorV3Test", + "error": "junit.framework.ComparisonFailure", + "message": "expected:<...t\":1,", + "methodName": "testGoldenOutput0a" + }, + { + "className": " com.google.debugging.sourcemap.SourceMapGeneratorV3Test", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<10> but was:<9>", + "methodName": "testMultilineMapping" + }, + { + "className": " com.google.debugging.sourcemap.SourceMapGeneratorV3Test", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<10> but was:<9>", + "methodName": "testMultiFunctionMapping" + }, + { + "className": " 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n, Node parent) {\n renamer.addDeclaredName(name);\n }\n \n+ nameStack.push(renamer);\n+ }\n+ break;\n \n+ case Token.LP: {\n+ Renamer renamer = nameStack.peek().forChildScope();\n \n // Add the function parameters\n+ for (Node c = n.getFirstChild(); c != null; c = c.getNext()) {\n+ String name = c.getString();\n+ renamer.addDeclaredName(name);\n+ }\n \n // Add the function body declarations\n+ Node functionBody = n.getNext();\n+ findDeclaredNames(functionBody, null, renamer);\n \n nameStack.push(renamer);\n }\n@@ -170,13 +173,16 @@ public void visit(NodeTraversal t, Node n, Node parent) {\n \n case Token.FUNCTION:\n // Remove the function body scope\n+ nameStack.pop();\n // Remove function recursive name (if any).\n nameStack.pop();\n break;\n \n+ case Token.LP:\n // Note: The parameters and function body variables live in the\n // same scope, we introduce the scope when in the \"shouldTraverse\"\n // visit of LP, but remove it when when we exit the function above.\n+ break;\n \n case Token.CATCH:\n // Remove catch except name from the stack of names.\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.FunctionInjectorTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testInline19b" + }, + { + "className": " com.google.javascript.jscomp.FunctionInjectorTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testInlineIntoLoop" + }, + { + "className": " com.google.javascript.jscomp.FunctionInjectorTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testInline13" + }, + { + "className": " com.google.javascript.jscomp.FunctionInjectorTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testInline14" + }, + { + "className": " com.google.javascript.jscomp.FunctionInjectorTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testInline15" + }, + { + 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!options.disables(DiagnosticGroups.GLOBAL_THIS)) {\n options.setWarningLevel(\n DiagnosticGroups.GLOBAL_THIS,\n options.checkGlobalThisLevel);\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.CommandLineRunnerTest", + "error": "junit.framework.AssertionFailedError", + "message": "Expected no warnings or errors", + "methodName": "testCheckGlobalThisOff" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 1, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 2, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condExpExpand", + "mcAdd" + ], + "repairPatterns": [ + "expLogicExpand", + "singleLine" + ], + "repairTools": [ + "rtDynaMoth" + ], + "revisionId": "49b4ef31c850611a5c85d95140b4cedda7f4c59a" + }, + { + "bugId": 55, + "changedFiles": { + "com/google/javascript/jscomp/FunctionRewriter.java": { + "changes": [ + [ + 117 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/FunctionRewriter.java\n+++ b/src/com/google/javascript/jscomp/FunctionRewriter.java\n@@ -114,7 +114,8 @@ public Node parseHelperCode(Reducer reducer) {\n }\n \n private static boolean isReduceableFunctionExpression(Node n) {\n- return NodeUtil.isFunctionExpression(n);\n+ return NodeUtil.isFunctionExpression(n)\n+ && !NodeUtil.isGetOrSetKey(n.getParent());\n }\n \n /**\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.FunctionRewriterTest", + "error": "java.lang.IllegalStateException", + "message": "Expected function but was call Reference node CALL 4 [free_call: 1] [source_file: testcode]", + "methodName": "testIssue538" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 1, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 2, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "mcAdd", + "retExpChange" + ], + "repairPatterns": [ + "expLogicExpand", + "singleLine" + ], + "repairTools": [ + "rtCardumen", + "rtDynaMoth", + "rtNopol" + ], + "revisionId": "f2c0cb1f67ecb3315c0cb11326c9cb04db07ee8a" + }, + { + "bugId": 54, + "changedFiles": { + "com/google/javascript/jscomp/TypedScopeCreator.java": { + "changes": [ + [ + 1413 + ] + ], + "inserts": [ + [ + 1408, + 1409, + 1410, + 1411, + 1412, + 1413 + ] + ] + }, + "com/google/javascript/rhino/jstype/FunctionType.java": { + "changes": [ + [ + 366 + ] + ], + "deletes": [ + [ + 341 + ] + ], + "inserts": [ + [ + 365, + 366 + ], + [ + 371, + 372, + 373, + 374, + 375 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/TypedScopeCreator.java\n+++ b/src/com/google/javascript/jscomp/TypedScopeCreator.java\n@@ -1410,7 +1410,13 @@ void maybeDeclareQualifiedName(NodeTraversal t, JSDocInfo info,\n // then they are responsible for making sure that the object literal's\n // implicit prototype is set up appropriately. We just obey\n // the @extends tag.\n- if (!qVar.isTypeInferred()) {\n+ ObjectType qVarType = ObjectType.cast(qVar.getType());\n+ if (qVarType != null &&\n+ rhsValue != null &&\n+ rhsValue.getType() == Token.OBJECTLIT) {\n+ typeRegistry.resetImplicitPrototype(\n+ rhsValue.getJSType(), qVarType.getImplicitPrototype());\n+ } else if (!qVar.isTypeInferred()) {\n // If the programmer has declared that F inherits from Super,\n // and they assign F.prototype to some arbitrary expression,\n // there's not much we can do. We just ignore the expression,\n--- a/src/com/google/javascript/rhino/jstype/FunctionType.java\n+++ b/src/com/google/javascript/rhino/jstype/FunctionType.java\n@@ -338,7 +338,6 @@ public void setPrototypeBasedOn(ObjectType baseType) {\n //\n // In the second case, we just use the anonymous object as the prototype.\n if (baseType.hasReferenceName() ||\n- baseType.isUnknownType() ||\n isNativeObjectType() ||\n baseType.isFunctionPrototypeType() ||\n !(baseType instanceof PrototypeObjectType)) {\n@@ -363,14 +362,18 @@ public boolean setPrototype(PrototypeObjectType prototype) {\n return false;\n }\n \n- boolean replacedPrototype = prototype != null;\n+ PrototypeObjectType oldPrototype = this.prototype;\n+ boolean replacedPrototype = oldPrototype != null;\n \n this.prototype = prototype;\n this.prototypeSlot = new SimpleSlot(\"prototype\", prototype, true);\n this.prototype.setOwnerFunction(this);\n \n+ if (oldPrototype != null) {\n // Disassociating the old prototype makes this easier to debug--\n // we don't have to worry about two prototypes running around.\n+ oldPrototype.setOwnerFunction(null);\n+ }\n \n if (isConstructor() || isInterface()) {\n FunctionType superClass = getSuperClassConstructor();\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.TypeCheckTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected:<[Function Foo.prototype.method: called with 1 argument(s). Function requires at least 0 argument(s) and no more than 0 argument(s).]> but was:<[Property baz never defined on Bar]>", + "methodName": "testIssue537a" + }, + { + "className": " com.google.javascript.jscomp.TypeCheckTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected:<[Function Bar.prototype.baz: called with 1 argument(s). Function requires at least 0 argument(s) and no more than 0 argument(s).]> but was:<[Property baz never defined on Bar]>", + "methodName": "testIssue537b" + }, + { + "className": " com.google.javascript.jscomp.TypedScopeCreatorTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected:<[?]> but was:<[number]>", + "methodName": "testPropertyOnUnknownSuperClass2" + } + ], + "metrics": { + "chunks": 5, + "classes": 2, + "files": 2, + "linesAdd": 10, + "linesMod": 2, + "linesRem": 1, + "methods": 3, + "sizeInLines": 13, + "spreadAllLines": 31, + "spreadCodeOnly": 18 + }, + "observations": "One of the chunks have a kind of Wrap-with-IfElse done with the replacement of existent conditional block.", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "assignAdd", + "assignExpChange", + "condBranIfAdd", + "condBranIfElseAdd", + "condExpRed", + "mcAdd", + "mcRem", + "varAdd", + "varReplVar" + ], + "repairPatterns": [ + "condBlockOthersAdd", + 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com.google.javascript.jscomp.JSCompilerSourceExcerptProviderTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected: but was:", + "methodName": "testExceptNoNewLine" + }, + { + "className": " com.google.javascript.jscomp.JsMessageExtractorTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testSyntaxError1" + }, + { + "className": " com.google.javascript.jscomp.JsMessageExtractorTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testSyntaxError2" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 4, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 4, + "spreadAllLines": 1, + "spreadCodeOnly": 1 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condBranIfElseAdd", + "mcAdd", + "retBranchAdd" + ], + "repairPatterns": [ + "wrapsIfElse" + ], + "repairTools": [], + "revisionId": "9e921fa973c603473f745fff76c44620fd7719e3" + }, + { + "bugId": 58, + "changedFiles": { + "com/google/javascript/jscomp/LiveVariablesAnalysis.java": { + "inserts": [ + [ + 206 + ], + [ + 208 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/LiveVariablesAnalysis.java\n+++ b/src/com/google/javascript/jscomp/LiveVariablesAnalysis.java\n@@ -203,8 +203,12 @@ private void computeGenKill(Node n, BitSet gen, BitSet kill,\n // for(var x in y) {...}\n lhs = lhs.getLastChild();\n }\n+ if (NodeUtil.isName(lhs)) {\n addToSetIfLocal(lhs, kill);\n addToSetIfLocal(lhs, gen);\n+ } else {\n+ computeGenKill(lhs, gen, kill, conditional);\n+ }\n computeGenKill(rhs, gen, kill, conditional);\n }\n return;\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.LiveVariableAnalysisTest", + "error": "java.lang.IllegalStateException", + "message": "", + "methodName": "testExpressionInForIn" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 4, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 4, + "spreadAllLines": 2, + "spreadCodeOnly": 2 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condBranIfElseAdd", + "mcAdd" + ], + "repairPatterns": [ + "wrapsIfElse" + ], + "repairTools": [], + "revisionId": "f640b5dec722422c93a9a624cd21d30b5e321858" + }, + { + "bugId": 57, + "changedFiles": { + "com/google/javascript/jscomp/ClosureCodingConvention.java": { + "changes": [ + [ + 197 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/ClosureCodingConvention.java\n+++ b/src/com/google/javascript/jscomp/ClosureCodingConvention.java\n@@ -194,7 +194,7 @@ private static String extractClassNameIfGoog(Node node, Node parent,\n String qualifiedName = callee.getQualifiedName();\n if (functionName.equals(qualifiedName)) {\n Node target = callee.getNext();\n- if (target != null) {\n+ if (target != null && target.getType() == Token.STRING) {\n className = target.getString();\n }\n }\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.ClosureCodingConventionTest", + "error": "junit.framework.AssertionFailedError", + "message": "Expected: but was: foo", + "methodName": "testRequire" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Altought there is a null check in the conditional expression, the expression is expanded with an extra condition not related to null-check.", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condExpExpand", + "mcAdd" + ], + "repairPatterns": [ + "expLogicExpand", + "singleLine" + ], + "repairTools": [], + "revisionId": "f759f431d5a7a2261b44440bca9cfab93ae25302" + }, + { + "bugId": 62, + "changedFiles": { + "com/google/javascript/jscomp/LightweightMessageFormatter.java": { + "changes": [ + [ + 98 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/LightweightMessageFormatter.java\n+++ b/src/com/google/javascript/jscomp/LightweightMessageFormatter.java\n@@ -95,7 +95,7 @@ private String format(JSError error, boolean warning) {\n // charno == sourceExpert.length() means something is missing\n // at the end of the line\n if (excerpt.equals(LINE)\n- && 0 <= charno && charno < sourceExcerpt.length()) {\n+ && 0 <= charno && charno <= sourceExcerpt.length()) {\n for (int i = 0; i < charno; i++) {\n char c = sourceExcerpt.charAt(i);\n if (Character.isWhitespace(c)) {\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.LightweightMessageFormatterTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected:<...ion here", + "methodName": "testFormatErrorSpaceEndOfLine1" + }, + { + "className": " com.google.javascript.jscomp.LightweightMessageFormatterTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected:<...iption here", + "methodName": "testFormatErrorSpaceEndOfLine2" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Just changed the operator in \"if\" condition", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condExpMod" + ], + "repairPatterns": [ + "expLogicMod", + "singleLine" + ], + "repairTools": [ + "rtDynaMoth", + "rtHDRepair", + "rtJAID", + "rtNopol" + ], + "revisionId": "b12d1d6489329c989b15635f6f7f06681b3f6582" + }, + { + "bugId": 60, + "changedFiles": { + "com/google/javascript/jscomp/NodeUtil.java": { + "inserts": [ + [ + 76, + 80, + 83, + 88, + 93, + 103, + 107, + 108, + 109 + ], + [ + 136 + ], + [ + 137, + 138 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/NodeUtil.java\n+++ b/src/com/google/javascript/jscomp/NodeUtil.java\n@@ -105,6 +105,8 @@ static TernaryValue getImpureBooleanValue(Node n) {\n // ignoring side-effects\n return TernaryValue.TRUE;\n \n+ case Token.VOID:\n+ return TernaryValue.FALSE;\n \n default:\n return getPureBooleanValue(n);\n@@ -133,7 +135,10 @@ static TernaryValue getPureBooleanValue(Node n) {\n return TernaryValue.FALSE;\n \n case Token.VOID:\n+ if (!mayHaveSideEffects(n.getFirstChild())) {\n return TernaryValue.FALSE;\n+ }\n+ break;\n \n case Token.NAME:\n String name = n.getString();\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.CommandLineRunnerTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testIssue504" + }, + { + "className": " com.google.javascript.jscomp.NodeUtilTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected: but was:", + "methodName": "testGetBooleanValue" + } + ], + "metrics": { + "chunks": 3, + "classes": 1, + "files": 1, + "linesAdd": 5, + "linesMod": 0, + "linesRem": 0, + "methods": 2, + "sizeInLines": 5, + "spreadAllLines": 29, + "spreadCodeOnly": 17 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condBranCaseAdd", + "condBranIfAdd", + "mcAdd", + "retBranchAdd" + ], + "repairPatterns": [ + "condBlockRetAdd", + "wrapsIf" + ], + "repairTools": [ + "rtDynaMoth", + "rtNopol" + ], + "revisionId": "fbaadc736f0031dd84bebea33abae497b47158cb" + }, + { + "bugId": 63, + "changedFiles": { + "com/google/javascript/jscomp/LightweightMessageFormatter.java": { + "changes": [ + [ + 98 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/LightweightMessageFormatter.java\n+++ b/src/com/google/javascript/jscomp/LightweightMessageFormatter.java\n@@ -95,7 +95,7 @@ private String format(JSError error, boolean warning) {\n // charno == sourceExpert.length() means something is missing\n // at the end of the line\n if (excerpt.equals(LINE)\n- && 0 <= charno && charno < sourceExcerpt.length()) {\n+ && 0 <= charno && charno <= sourceExcerpt.length()) {\n for (int i = 0; i < charno; i++) {\n char c = sourceExcerpt.charAt(i);\n if (Character.isWhitespace(c)) {\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.LightweightMessageFormatterTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected:<...ion here", + "methodName": "testFormatErrorSpaceEndOfLine1" + }, + { + "className": " com.google.javascript.jscomp.LightweightMessageFormatterTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected:<...iption here", + "methodName": "testFormatErrorSpaceEndOfLine2" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Same as bug 62", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condExpMod" + ], + "repairPatterns": [ + "expLogicMod", + "singleLine" + ], + "repairTools": [ + "rtDynaMoth", + "rtJAID", + "rtNopol" + ], + "revisionId": "37b0e1b0b5860e6cd4f48519c1105623778dc44f" + }, + { + "bugId": 61, + "changedFiles": { + "com/google/javascript/jscomp/NodeUtil.java": { + "inserts": [ + [ + 956, + 957, + 958, + 959 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/NodeUtil.java\n+++ b/src/com/google/javascript/jscomp/NodeUtil.java\n@@ -955,6 +955,12 @@ static boolean functionCallHasSideEffects(\n }\n \n // Functions in the \"Math\" namespace have no side effects.\n+ if (nameNode.getFirstChild().getType() == Token.NAME) {\n+ String namespaceName = nameNode.getFirstChild().getString();\n+ if (namespaceName.equals(\"Math\")) {\n+ return false;\n+ }\n+ }\n \n if (compiler != null && !compiler.hasRegExpGlobalReferences()) {\n if (nameNode.getFirstChild().getType() == Token.REGEXP\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.PeepholeRemoveDeadCodeTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testCall1" + }, + { + "className": " com.google.javascript.jscomp.PeepholeRemoveDeadCodeTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testCall2" + }, + { + "className": " com.google.javascript.jscomp.PeepholeRemoveDeadCodeTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testRemoveUselessOps" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 6, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 6, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "assignAdd", + "condBranIfAdd", + "mcAdd", + "retBranchAdd", + "varAdd" + ], + "repairPatterns": [ + "condBlockOthersAdd", + "condBlockRetAdd" + ], + "repairTools": [ + "rtDynaMoth", + "rtNopol" + ], + "revisionId": "34e4616a924bf272c076039e143e20f1d792731e" + }, + { + "bugId": 64, + "changedFiles": { + "com/google/javascript/jscomp/Compiler.java": { + "changes": [ + [ + 1432 + ], + [ + 1461 + ], + [ + 1467 + ], + [ + 1473 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/Compiler.java\n+++ b/src/com/google/javascript/jscomp/Compiler.java\n@@ -1429,7 +1429,7 @@ public Void call() throws Exception {\n \n // if LanguageMode is ECMASCRIPT5_STRICT, only print 'use strict'\n // for the first input file\n- String code = toSource(root, sourceMap);\n+ String code = toSource(root, sourceMap, inputSeqNum == 0);\n if (!code.isEmpty()) {\n cb.append(code);\n \n@@ -1458,19 +1458,19 @@ public Void call() throws Exception {\n @Override\n String toSource(Node n) {\n initCompilerOptionsIfTesting();\n- return toSource(n, null);\n+ return toSource(n, null, true);\n }\n \n /**\n * Generates JavaScript source code for an AST.\n */\n- private String toSource(Node n, SourceMap sourceMap) {\n+ private String toSource(Node n, SourceMap sourceMap, boolean firstOutput) {\n CodePrinter.Builder builder = new CodePrinter.Builder(n);\n builder.setPrettyPrint(options.prettyPrint);\n builder.setLineBreak(options.lineBreak);\n builder.setSourceMap(sourceMap);\n builder.setSourceMapDetailLevel(options.sourceMapDetailLevel);\n- builder.setTagAsStrict(\n+ builder.setTagAsStrict(firstOutput &&\n options.getLanguageOut() == LanguageMode.ECMASCRIPT5_STRICT);\n builder.setLineLengthThreshold(options.lineLengthThreshold);\n \n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.CommandLineRunnerTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<17> but was:<-1>", + "methodName": "testES5StrictUseStrictMultipleInputs" + } + ], + "metrics": { + "chunks": 4, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 4, + "linesRem": 0, + "methods": 3, + "sizeInLines": 4, + "spreadAllLines": 38, + "spreadCodeOnly": 25 + }, + "observations": "New parameters are added in three method calls (call to overloaded methods). A logic expression passed to a method call is changed.", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "mcParAdd", + "mcParValChange", + "mcRepl", + "mdParAdd", + "retExpChange" + ], + "repairPatterns": [ + "expLogicExpand" + ], + "repairTools": [], + "revisionId": "de726510af4329fb8eeb8a54b2d93d8d37c87545" + }, + { + "bugId": 65, + "changedFiles": { + "com/google/javascript/jscomp/CodeGenerator.java": { + "changes": [ + [ + 1015 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/CodeGenerator.java\n+++ b/src/com/google/javascript/jscomp/CodeGenerator.java\n@@ -1012,7 +1012,7 @@ static String strEscape(String s, char quote,\n for (int i = 0; i < s.length(); i++) {\n char c = s.charAt(i);\n switch (c) {\n- case '\\0': sb.append(\"\\\\0\"); break;\n+ case '\\0': sb.append(\"\\\\000\"); break;\n case '\\n': sb.append(\"\\\\n\"); break;\n case '\\r': sb.append(\"\\\\r\"); break;\n case '\\t': sb.append(\"\\\\t\"); break;\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.CodePrinterTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected: but was:", + "methodName": "testZero" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "mcParValChange" + ], + "repairPatterns": [ + "constChange", + "singleLine" + ], + "repairTools": [], + "revisionId": "48aea0ff7d027507362007415963a4b662fb10a7" + }, + { + "bugId": 66, + "changedFiles": { + "com/google/javascript/jscomp/TypeCheck.java": { + "inserts": [ + [ + 516, + 517 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/TypeCheck.java\n+++ b/src/com/google/javascript/jscomp/TypeCheck.java\n@@ -513,7 +513,9 @@ public void visit(NodeTraversal t, Node n, Node parent) {\n // Object literal keys are handled with OBJECTLIT\n if (!NodeUtil.isObjectLitKey(n, n.getParent())) {\n ensureTyped(t, n, STRING_TYPE);\n+ } else {\n // Object literal keys are not typeable\n+ typeable = false;\n }\n break;\n \n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.TypeCheckTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<100.0> but was:<62.5>", + "methodName": "testGetTypedPercent5" + }, + { + "className": " com.google.javascript.jscomp.TypeCheckTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<100.0> but was:<66.66666666666667>", + "methodName": "testGetTypedPercent6" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 2, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 2, + "spreadAllLines": 1, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "assignAdd", + "condBranElseAdd" + ], + "repairPatterns": [ + "condBlockOthersAdd" + ], + "repairTools": [ + "rtDynaMoth", + "rtNopol" + ], + "revisionId": "59a30b48325cccadabae8687fdf603d72e26c157" + }, + { + "bugId": 73, + "changedFiles": { + "com/google/javascript/jscomp/CodeGenerator.java": { + "changes": [ + [ + 1045 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/CodeGenerator.java\n+++ b/src/com/google/javascript/jscomp/CodeGenerator.java\n@@ -1042,7 +1042,7 @@ static String strEscape(String s, char quote,\n // No charsetEncoder provided - pass straight latin characters\n // through, and escape the rest. Doing the explicit character\n // check is measurably faster than using the CharsetEncoder.\n- if (c > 0x1f && c <= 0x7f) {\n+ if (c > 0x1f && c < 0x7f) {\n sb.append(c);\n } else {\n // Other characters can be misinterpreted by some js parsers,\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.CodePrinterTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected: but was:", + "methodName": "testUnicode" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condExpMod" + ], + "repairPatterns": [ + "expLogicMod", + "singleLine" + ], + "repairTools": [ + "rtHDRepair", + "rtJAID", + "rtssFix" + ], + "revisionId": "ee8344091722c28c9351e78dcb4155fbfddfd1af" + }, + { + "bugId": 67, + "changedFiles": { + "com/google/javascript/jscomp/AnalyzePrototypeProperties.java": { + "changes": [ + [ + 318 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/AnalyzePrototypeProperties.java\n+++ b/src/com/google/javascript/jscomp/AnalyzePrototypeProperties.java\n@@ -315,7 +315,7 @@ private boolean isPrototypePropertyAssign(Node assign) {\n Node n = assign.getFirstChild();\n if (n != null && NodeUtil.isVarOrSimpleAssignLhs(n, assign)\n && n.getType() == Token.GETPROP\n- ) {\n+ && assign.getParent().getType() == Token.EXPR_RESULT) {\n // We want to exclude the assignment itself from the usage list\n boolean isChainedProperty =\n n.getFirstChild().getType() == Token.GETPROP;\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.RemoveUnusedPrototypePropertiesTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testAliasing7" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, 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left.getType();\n- int rhType = right.getType();\n+ int lhType = getNormalizedNodeType(left);\n+ int rhType = getNormalizedNodeType(right);\n switch (lhType) {\n case Token.VOID:\n if (!NodeUtil.isLiteralValue(left.getFirstChild(), false)) {\n@@ -1071,6 +1071,19 @@ private Node tryFoldComparison(Node n, Node left, Node right) {\n /**\n * @return Translate NOT expressions into TRUE or FALSE when possible.\n */\n+ private int getNormalizedNodeType(Node n) {\n+ int type = n.getType();\n+ if (type == Token.NOT) {\n+ TernaryValue value = NodeUtil.getPureBooleanValue(n);\n+ switch (value) {\n+ case TRUE:\n+ return Token.TRUE;\n+ case FALSE:\n+ return Token.FALSE;\n+ }\n+ }\n+ return type;\n+ }\n \n /**\n * The result of the comparison as a Boolean or null if the\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.PeepholeFoldConstantsTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testFoldComparison3" + }, + { + "className": " com.google.javascript.jscomp.PeepholeFoldConstantsTest", + "error": "junit.framework.ComparisonFailure", + "message": "Expressions did not fold the same", + "methodName": "testInvertibleOperators" + }, + { + "className": " com.google.javascript.jscomp.PeepholeFoldConstantsTest", + "error": "junit.framework.ComparisonFailure", + "message": "Expressions did not fold the same", + "methodName": "testCommutativeOperators" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 13, + "linesMod": 2, + "linesRem": 0, + "methods": 2, + "sizeInLines": 15, + "spreadAllLines": 165, + "spreadCodeOnly": 136 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "assignAdd", + "assignExpChange", + "condBranCaseAdd", + "condBranIfAdd", + "mcAdd", + "mcRepl", + "mdAdd", + "retBranchAdd", + "varAdd" + ], + "repairPatterns": [ + "condBlockRetAdd", + "copyPaste", + "missComp", + "wrongMethodRef" + ], + "repairTools": [], + "revisionId": "03fee32a06ccf8257b2da67b9034270be38805ae" + }, + { + "bugId": 71, + "changedFiles": { + "com/google/javascript/jscomp/CheckAccessControls.java": { + "changes": [ + [ + 416 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/CheckAccessControls.java\n+++ b/src/com/google/javascript/jscomp/CheckAccessControls.java\n@@ -413,7 +413,7 @@ private void checkPropertyVisibility(NodeTraversal t,\n if (objectType != null) {\n // Is this a normal property access, or are we trying to override\n // an existing property?\n- boolean isOverride = t.inGlobalScope() &&\n+ boolean isOverride = parent.getJSDocInfo() != null &&\n parent.getType() == Token.ASSIGN &&\n parent.getFirstChild() == getprop;\n \n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.CheckAccessControlsTest", + "error": "junit.framework.AssertionFailedError", + "message": "Overriding private property of Foo.prototype.", + "methodName": "testNoPrivateAccessForProperties6" + }, + { + "className": " com.google.javascript.jscomp.CheckAccessControlsTest", + "error": "junit.framework.AssertionFailedError", + "message": "There should be one error. expected:<1> but was:<0>", + "methodName": "testNoPrivateAccessForProperties8" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "The null-check is done in a boolean expression assigned to a variable and not to a conditional test.", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "assignExpChange", + "mcAdd", + "mcRem" + ], + "repairPatterns": [ + "expLogicMod", + "missNullCheckN", + "singleLine" + ], + "repairTools": [], + "revisionId": "db1fdf97454a6e4ff2d29cab5f1ef2273b54c0b4" + }, + { + "bugId": 68, + "changedFiles": { + "com/google/javascript/jscomp/parsing/JsDocInfoParser.java": { + "deletes": [ + [ + 869 + ] + ], + "inserts": [ + [ + 871 + ], + [ + 1708, + 1709 + ], + [ + 1761 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/parsing/JsDocInfoParser.java\n+++ b/src/com/google/javascript/jscomp/parsing/JsDocInfoParser.java\n@@ -865,9 +865,9 @@ boolean parse() {\n }\n break;\n }\n+ }\n \n token = eatTokensUntilEOL();\n- }\n continue retry;\n }\n }\n@@ -1706,6 +1706,7 @@ private Node parseBasicTypeExpression(JsDocToken token) {\n }\n }\n \n+ restoreLookAhead(token);\n return reportGenericTypeSyntaxWarning();\n }\n \n@@ -1758,6 +1759,7 @@ private Node parseFunctionType(JsDocToken token) {\n // NOTE(nicksantos): We're not implementing generics at the moment, so\n // just throw out TypeParameters.\n if (token != JsDocToken.LP) {\n+ restoreLookAhead(token);\n return reportTypeSyntaxWarning(\"msg.jsdoc.missing.lp\");\n }\n \n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.parsing.JsDocInfoParserTest", + "error": "junit.framework.AssertionFailedError", + "message": "extra warning: Unexpected end of file", + "methodName": "testIssue477" + } + ], + "metrics": { + "chunks": 4, + "classes": 1, + "files": 1, + "linesAdd": 3, + "linesMod": 0, + "linesRem": 1, + "methods": 3, + "sizeInLines": 4, + "spreadAllLines": 892, + "spreadCodeOnly": 554 + }, + "observations": "An assignment was moved outside a branch.", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "mcAdd" + ], + "repairPatterns": [ + "codeMove", + "copyPaste", + "missComp", + "unwrapIfElse" + ], + "repairTools": [], + "revisionId": "9d5a6e3082dd99f6c44df1b3526b9e83b79aa7da" + }, + { + "bugId": 69, + "changedFiles": { + "com/google/javascript/jscomp/TypeCheck.java": { + "inserts": [ + [ + 1577, + 1578, + 1579, + 1580, + 1581 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/TypeCheck.java\n+++ b/src/com/google/javascript/jscomp/TypeCheck.java\n@@ -1577,6 +1577,13 @@ private void visitCall(NodeTraversal t, Node n) {\n \n // Functions with explcit 'this' types must be called in a GETPROP\n // or GETELEM.\n+ if (functionType.isOrdinaryFunction() &&\n+ !functionType.getTypeOfThis().isUnknownType() &&\n+ !functionType.getTypeOfThis().isNativeObjectType() &&\n+ !(child.getType() == Token.GETELEM ||\n+ child.getType() == Token.GETPROP)) {\n+ report(t, n, EXPECTED_THIS_TYPE, functionType.toString());\n+ }\n \n visitParameterList(t, n, functionType);\n ensureTyped(t, n, functionType.getReturnType());\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.TypeCheckTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected a warning", + "methodName": "testThisTypeOfFunction2" + }, + { + "className": " com.google.javascript.jscomp.TypeCheckTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected a warning", + "methodName": "testThisTypeOfFunction3" + }, + { + "className": " com.google.javascript.jscomp.TypeCheckTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected a warning", + "methodName": "testThisTypeOfFunction4" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 7, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 7, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condBranIfAdd", + "mcAdd" + ], + "repairPatterns": [ + "condBlockOthersAdd", + "missComp" + ], + "repairTools": [], + "revisionId": "63df133d0850805818d1e280ba47dcefc9763c89" + }, + { + "bugId": 70, + "changedFiles": { + "com/google/javascript/jscomp/TypedScopeCreator.java": { + "changes": [ + [ + 1745 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/TypedScopeCreator.java\n+++ b/src/com/google/javascript/jscomp/TypedScopeCreator.java\n@@ -1742,7 +1742,7 @@ private void declareArguments(Node functionNode) {\n for (Node astParameter : astParameters.children()) {\n if (jsDocParameter != null) {\n defineSlot(astParameter, functionNode,\n- jsDocParameter.getJSType(), true);\n+ jsDocParameter.getJSType(), false);\n jsDocParameter = jsDocParameter.getNext();\n } else {\n defineSlot(astParameter, functionNode, null, true);\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.LooseTypeCheckTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<2> but was:<1>", + "methodName": "testDuplicateLocalVarDecl" + }, + { + "className": " com.google.javascript.jscomp.LooseTypeCheckTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected a warning", + "methodName": "testFunctionArguments13" + }, + { + "className": " com.google.javascript.jscomp.TypeCheckTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected a warning", + "methodName": "testScoping12" + }, + { + "className": " com.google.javascript.jscomp.TypeCheckTest", + "error": "junit.framework.AssertionFailedError", + "message": "unexpected warning(s) : JSC_DUP_VAR_DECLARATION. variable x redefined with type string, original definition at [testcode] :2 with type number at [testcode] line 2 : 42 expected:<2> but was:<1>", + "methodName": "testDuplicateLocalVarDecl" + }, + { + "className": " com.google.javascript.jscomp.TypeCheckTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected a warning", + "methodName": "testFunctionArguments13" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "mcParValChange" + ], + "repairPatterns": [ + "constChange", + "singleLine" + ], + "repairTools": [ + "rtJAID", + "rtssFix" + ], + "revisionId": "ec4a34c2bd87ba54fa8770affdeeea4f3c42089b" + }, + { + "bugId": 72, + "changedFiles": { + "com/google/javascript/jscomp/FunctionToBlockMutator.java": { + "inserts": [ + [ + 151, + 152 + ] + ] + }, + "com/google/javascript/jscomp/RenameLabels.java": { + "changes": [ + [ + 215 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/FunctionToBlockMutator.java\n+++ b/src/com/google/javascript/jscomp/FunctionToBlockMutator.java\n@@ -149,6 +149,8 @@ private void makeLocalNamesUnique(Node fnNode, boolean isCallInLoop) {\n \"inline_\",\n isCallInLoop)));\n // Make label names unique to this instance.\n+ new RenameLabels(compiler, new LabelNameSupplier(idSupplier), false)\n+ .process(null, fnNode);\n }\n \n static class LabelNameSupplier implements Supplier {\n--- a/src/com/google/javascript/jscomp/RenameLabels.java\n+++ b/src/com/google/javascript/jscomp/RenameLabels.java\n@@ -212,7 +212,7 @@ private void visitLabel(Node node, Node parent) {\n String name = nameNode.getString();\n LabelInfo li = getLabelInfo(name);\n // This is a label...\n- if (li.referenced) {\n+ if (li.referenced || !removeUnused) {\n String newName = getNameForId(li.id);\n if (!name.equals(newName)) {\n // ... and it is used, give it the short name.\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.InlineFunctionsTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testInlineFunctions31" + } + ], + "metrics": { + "chunks": 2, + "classes": 2, + "files": 2, + "linesAdd": 2, + "linesMod": 1, + "linesRem": 0, + "methods": 2, + "sizeInLines": 3, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Instantiates an anonymous object and make a method call on it.", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condExpExpand", + "mcAdd", + "objInstAdd" + ], + "repairPatterns": [ + "expLogicExpand", + "missComp" + ], + "repairTools": [ + "rtDynaMoth", + "rtNopol" + ], + "revisionId": "e323b879de2e53e5eedf6e7afb0d582382c6248d" + }, + { + "bugId": 76, + "changedFiles": { + "com/google/javascript/jscomp/DeadAssignmentsElimination.java": { + "deletes": [ + [ + 309 + ], + [ + 318 + ], + [ + 313 + ], + [ + 314 + ], + [ + 315 + ], + [ + 316 + ], + [ + 317 + ], + [ + 372 + ], + [ + 377 + ] + ], + "inserts": [ + [ + 297, + 298, + 299, + 300, + 301 + ], + [ + 302, + 303, + 304, + 305, + 306 + ], + [ + 311, + 312, + 313 + ], + [ + 320 + ], + [ + 340, + 341 + ], + [ + 362, + 363, + 364 + ], + [ + 365 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/DeadAssignmentsElimination.java\n+++ b/src/com/google/javascript/jscomp/DeadAssignmentsElimination.java\n@@ -297,26 +297,40 @@ private boolean isVariableStillLiveWithinExpression(\n // If the currently node is the first child of\n // AND/OR, be conservative only consider the READs\n // of the second operand.\n+ if (n.getNext() != null) {\n+ state = isVariableReadBeforeKill(\n+ n.getNext(), variable);\n+ if (state == VariableLiveness.KILL) {\n+ state = VariableLiveness.MAYBE_LIVE;\n+ }\n+ }\n+ break;\n \n case Token.HOOK:\n // If current node is the condition, check each following\n // branch, otherwise it is a conditional branch and the\n // other branch can be ignored.\n+ if (n.getNext() != null && n.getNext().getNext() != null) {\n+ state = checkHookBranchReadBeforeKill(\n+ n.getNext(), n.getNext().getNext(), variable);\n+ }\n+ break;\n \n default:\n for(Node sibling = n.getNext(); sibling != null;\n sibling = sibling.getNext()) {\n- if (!ControlFlowGraph.isEnteringNewCfgNode(sibling)) {\n state = isVariableReadBeforeKill(sibling, variable);\n+ if (state != VariableLiveness.MAYBE_LIVE) {\n+ break;\n+ }\n+ }\n+ }\n \n // If we see a READ or KILL there is no need to continue.\n if (state == VariableLiveness.READ) {\n return true;\n } else if (state == VariableLiveness.KILL) {\n return false;\n- }\n- }\n- }\n }\n n = n.getParent();\n }\n@@ -337,6 +351,9 @@ private boolean isVariableStillLiveWithinExpression(\n */\n private VariableLiveness isVariableReadBeforeKill(\n Node n, String variable) {\n+ if (ControlFlowGraph.isEnteringNewCfgNode(n)) { // Not a FUNCTION\n+ return VariableLiveness.MAYBE_LIVE;\n+ }\n \n if (NodeUtil.isName(n) && variable.equals(n.getString())) {\n if (NodeUtil.isLhs(n, n.getParent())) {\n@@ -359,9 +376,25 @@ private VariableLiveness isVariableReadBeforeKill(\n // Conditionals\n case Token.OR:\n case Token.AND:\n+ VariableLiveness v1 = isVariableReadBeforeKill(\n+ n.getFirstChild(), variable);\n+ VariableLiveness v2 = isVariableReadBeforeKill(\n+ n.getLastChild(), variable);\n // With a AND/OR the first branch always runs, but the second is\n // may not.\n+ if (v1 != VariableLiveness.MAYBE_LIVE) {\n+ return v1;\n+ } else if (v2 == VariableLiveness.READ) {\n+ return VariableLiveness.READ;\n+ } else {\n+ return VariableLiveness.MAYBE_LIVE;\n+ }\n case Token.HOOK:\n+ VariableLiveness first = isVariableReadBeforeKill(\n+ n.getFirstChild(), variable);\n+ if (first != VariableLiveness.MAYBE_LIVE) {\n+ return first;\n+ }\n return checkHookBranchReadBeforeKill(\n n.getFirstChild().getNext(), n.getLastChild(), variable);\n \n@@ -369,13 +402,11 @@ private VariableLiveness isVariableReadBeforeKill(\n // Expressions are evaluated left-right, depth first.\n for (Node child = n.getFirstChild();\n child != null; child = child.getNext()) {\n- if (!ControlFlowGraph.isEnteringNewCfgNode(child)) { // Not a FUNCTION\n VariableLiveness state = isVariableReadBeforeKill(child, variable);\n if (state != VariableLiveness.MAYBE_LIVE) {\n return state;\n }\n }\n- }\n }\n \n return VariableLiveness.MAYBE_LIVE;\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.DeadAssignmentsEliminationTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testInExpression2" + }, + { + "className": " com.google.javascript.jscomp.DeadAssignmentsEliminationTest", + "error": "junit.framework.AssertionFailedError", + "message": "", 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"repairTools": [ + "rtDynaMoth", + "rtNopol" + ], + "revisionId": "78b01c3a435cd175ce3ee70f97b2f8faac342cdc" + }, + { + "bugId": 79, + "changedFiles": { + "com/google/javascript/jscomp/Normalize.java": { + "changes": [ + [ + 122 + ] + ] + }, + "com/google/javascript/jscomp/VarCheck.java": { + "inserts": [ + [ + 221 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/Normalize.java\n+++ b/src/com/google/javascript/jscomp/Normalize.java\n@@ -119,7 +119,7 @@ private void reportCodeChange(String changeDescription) {\n public void process(Node externs, Node root) {\n new NodeTraversal(\n compiler, new NormalizeStatements(compiler, assertOnChange))\n- .traverse(root);\n+ .traverseRoots(externs, root);\n if (MAKE_LOCAL_NAMES_UNIQUE) {\n MakeDeclaredNamesUnique renamer = new MakeDeclaredNamesUnique();\n NodeTraversal t = new NodeTraversal(compiler, renamer);\n--- a/src/com/google/javascript/jscomp/VarCheck.java\n+++ b/src/com/google/javascript/jscomp/VarCheck.java\n@@ -218,6 +218,7 @@ private void createSynthesizedExternVar(String varName) {\n getSynthesizedExternsRoot().addChildToBack(\n new Node(Token.VAR, nameNode));\n varsToDeclareInExterns.remove(varName);\n+ compiler.reportCodeChange();\n }\n \n /**\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.NormalizeTest", + "error": "java.lang.RuntimeException", + "message": "INTERNAL COMPILER ERROR.", + "methodName": "testIssue" + }, + { + "className": " com.google.javascript.jscomp.VarCheckTest", + "error": "junit.framework.AssertionFailedError", + "message": "compiler.reportCodeChange() should have been called", + "methodName": "testPropReferenceInExterns1" + }, + { + "className": " com.google.javascript.jscomp.VarCheckTest", + "error": "junit.framework.AssertionFailedError", + "message": "compiler.reportCodeChange() should have been called", + "methodName": "testPropReferenceInExterns3" + }, + { + "className": " com.google.javascript.jscomp.VarCheckTest", + "error": "junit.framework.AssertionFailedError", + "message": "compiler.reportCodeChange() should have been called", + "methodName": "testVarReferenceInExterns" + }, + { + "className": " com.google.javascript.jscomp.VarCheckTest", + "error": "junit.framework.AssertionFailedError", + "message": "compiler.reportCodeChange() should have been called", + "methodName": "testCallInExterns" + } + ], + "metrics": { + "chunks": 2, + "classes": 2, + "files": 2, + "linesAdd": 1, + "linesMod": 1, + "linesRem": 0, + "methods": 2, + "sizeInLines": 2, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Calls overloaded method with extra parameters.", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "mcAdd", + "mcParAdd", + "mcRepl" + ], + "repairPatterns": [ + "missComp", + "wrongMethodRef" + ], + "repairTools": [], + "revisionId": "5d397618f3c86d9c444a4c4c6441267b8a89a21d" + }, + { + "bugId": 77, + "changedFiles": { + "com/google/javascript/jscomp/CodeGenerator.java": { + "inserts": [ + [ + 966, + 967, + 968, + 969, + 970, + 971, + 972, + 981, + 998 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/CodeGenerator.java\n+++ b/src/com/google/javascript/jscomp/CodeGenerator.java\n@@ -963,6 +963,7 @@ static String strEscape(String s, char quote,\n for (int i = 0; i < s.length(); i++) {\n char c = s.charAt(i);\n switch (c) {\n+ case '\\0': sb.append(\"\\\\0\"); break;\n case '\\n': sb.append(\"\\\\n\"); break;\n case '\\r': sb.append(\"\\\\r\"); break;\n case '\\t': sb.append(\"\\\\t\"); break;\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.CodePrinterTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected: but was:", + "methodName": "testZero" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 1, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condBranCaseAdd", + "mcAdd" + ], + "repairPatterns": [ + "condBlockOthersAdd", + "singleLine" + ], + "repairTools": [], + "revisionId": "b88400ce0e9c1a0dadfd3417c256b02a82f38fe1" + }, + { + "bugId": 75, + "changedFiles": { + "com/google/javascript/jscomp/NodeUtil.java": { + "changes": [ + [ + 375 + ] + ], + "inserts": [ + [ + 313, + 314, + 315 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/NodeUtil.java\n+++ b/src/com/google/javascript/jscomp/NodeUtil.java\n@@ -310,7 +310,10 @@ static Double getNumberValue(Node n) {\n }\n \n static Double getStringNumberValue(String rawJsString) {\n+ if (rawJsString.contains(\"\\u000b\")) {\n // vertical tab is not always whitespace\n+ return null;\n+ }\n \n String s = trimJsWhiteSpace(rawJsString);\n // return ScriptRuntime.toNumber(s);\n@@ -372,7 +375,7 @@ static String trimJsWhiteSpace(String s) {\n static TernaryValue isStrWhiteSpaceChar(int c) {\n switch (c) {\n case '\\u000B': // \n- return TernaryValue.TRUE;\n+ return TernaryValue.UNKNOWN; // IE says \"no\", EcmaScript says \"yes\"\n case ' ': // \n case '\\n': // \n case '\\r': // \n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.PeepholeFoldConstantsTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testIEString" + } + ], + "metrics": { + "chunks": 3, + "classes": 1, + "files": 1, + "linesAdd": 3, + "linesMod": 1, + "linesRem": 0, + "methods": 2, + "sizeInLines": 4, + "spreadAllLines": 62, + "spreadCodeOnly": 46 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condBranIfAdd", + "mcAdd", + "retBranchAdd", + "retExpChange", + "varReplVar" + ], + "repairPatterns": [ + "condBlockRetAdd", + "constChange", + "wrongVarRef" + ], + "repairTools": [ + "rtDynaMoth", + "rtNopol" + ], + "revisionId": "c6cc58a9bc617483366141386e047b085b4e83ff" + }, + { + "bugId": 78, + "changedFiles": { + "com/google/javascript/jscomp/PeepholeFoldConstants.java": { + "deletes": [ + [ + 711 + ], + [ + 718 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/PeepholeFoldConstants.java\n+++ b/src/com/google/javascript/jscomp/PeepholeFoldConstants.java\n@@ -708,14 +708,12 @@ private Node performArithmeticOp(int opType, Node left, Node right) {\n break;\n case Token.MOD:\n if (rval == 0) {\n- error(DiagnosticType.error(\"JSC_DIVIDE_BY_0_ERROR\", \"Divide by 0\"), right);\n return null;\n }\n result = lval % rval;\n break;\n case Token.DIV:\n if (rval == 0) {\n- error(DiagnosticType.error(\"JSC_DIVIDE_BY_0_ERROR\", \"Divide by 0\"), right);\n return null;\n }\n result = lval / rval;\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.PeepholeFoldConstantsTest", + "error": "junit.framework.AssertionFailedError", + "message": "Unexpected error(s): JSC_DIVIDE_BY_0_ERROR. Divide by 0 at testcode line 1 : 8 expected:<0> but was:<1>", + "methodName": "testFoldArithmetic" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 0, + "linesRem": 2, + "methods": 1, + "sizeInLines": 2, + "spreadAllLines": 6, + "spreadCodeOnly": 6 + }, + "observations": "Removes error invocation call.", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "mcRem" + ], + "repairPatterns": [ + "copyPaste" + ], + "repairTools": [ + "rtDynaMoth", + "rtNopol" + ], + "revisionId": "25829b0395164533782d608399096803321225a7" + }, + { + "bugId": 83, + "changedFiles": { + "com/google/javascript/jscomp/CommandLineRunner.java": { + "changes": [ + [ + 334 + ] + ], + "inserts": [ + [ + 334 + ], + [ + 335, + 336 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/CommandLineRunner.java\n+++ b/src/com/google/javascript/jscomp/CommandLineRunner.java\n@@ -331,7 +331,10 @@ public BooleanOptionHandler(\n \n @Override\n public int parseArguments(Parameters params) throws CmdLineException {\n- String param = params.getParameter(0);\n+ String param = null;\n+ try {\n+ param = params.getParameter(0);\n+ } catch (CmdLineException e) {}\n \n if (param == null) {\n setter.addValue(true);\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.CommandLineRunnerTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testVersionFlag2" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 3, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 4, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "The existent code was splitted in declaration of var \"param\" out of the wrap and assignment, with Wrap-with-TryCatch.", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "assignAdd", + "exTryCatchAdd" + ], + "repairPatterns": [ + "wrapsTryCatch" + ], + "repairTools": [], + "revisionId": "43c245f0ff8d409e81e25687e69d34666b7cf26a" + }, + { + "bugId": 80, + "changedFiles": { + "com/google/javascript/jscomp/NodeUtil.java": { + "inserts": [ + [ + 1244, + 1245, + 1246, + 1247, + 1248, + 1249, + 1250, + 1251, + 1252, + 1253, + 1254, + 1255, + 1256, + 1257, + 1258, + 1259, + 1260, + 1261, + 1262 + ], + [ + 2910, + 2911, + 2912 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/NodeUtil.java\n+++ b/src/com/google/javascript/jscomp/NodeUtil.java\n@@ -1259,6 +1259,7 @@ static boolean isBooleanResultHelper(Node n) {\n // Inversion\n case Token.NOT:\n // delete operator returns a boolean.\n+ case Token.DELPROP:\n return true;\n default:\n return false;\n@@ -2907,6 +2908,7 @@ static boolean evaluatesToLocalValue(Node value, Predicate locals) {\n case Token.OBJECTLIT:\n // Literals objects with non-literal children are allowed.\n return true;\n+ case Token.DELPROP:\n case Token.IN:\n // TODO(johnlenz): should IN operator be included in #isSimpleOperator?\n return true;\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.NodeUtilTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testIsBooleanResult" + }, + { + "className": " com.google.javascript.jscomp.NodeUtilTest", + "error": "java.lang.IllegalStateException", + "message": "Unexpected expression nodeDELPROP 1 [sourcename: [testcode] ] [parenthesized: true]", + "methodName": "testLocalValue1" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 2, + "linesMod": 0, + "linesRem": 0, + "methods": 2, + "sizeInLines": 2, + "spreadAllLines": 1648, + "spreadCodeOnly": 989 + }, + "observations": "These blocks are inserted as extra switch clauses. Should be a \"Missing Condition\", \"Missing Block\" or both?", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condBranCaseAdd" + ], + "repairPatterns": [ + "expLogicExpand" + ], + "repairTools": [], + "revisionId": "58786c3f717fa506280127265cd68fedf17de0a9" + }, + { + "bugId": 81, + "changedFiles": { + "com/google/javascript/jscomp/parsing/IRFactory.java": { + "inserts": [ + [ + 517 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/parsing/IRFactory.java\n+++ b/src/com/google/javascript/jscomp/parsing/IRFactory.java\n@@ -514,6 +514,13 @@ Node processFunctionNode(FunctionNode functionNode) {\n Name name = functionNode.getFunctionName();\n Boolean isUnnamedFunction = false;\n if (name == null) {\n+ int functionType = functionNode.getFunctionType();\n+ if (functionType != FunctionNode.FUNCTION_EXPRESSION) {\n+ errorReporter.error(\n+ \"unnamed function statement\",\n+ sourceName,\n+ functionNode.getLineno(), \"\", 0);\n+ }\n name = new Name();\n name.setIdentifier(\"\");\n isUnnamedFunction = true;\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.parsing.ParserTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testUnnamedFunctionStatement" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 7, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 7, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "assignAdd", + "condBranIfAdd", + "mcAdd", + "varAdd" + ], + "repairPatterns": [ + "condBlockOthersAdd" + ], + "repairTools": [], + "revisionId": "084b868bc2fbf9d6d0319e5a362ade1d7f43f899" + }, + { + "bugId": 82, + "changedFiles": { + "com/google/javascript/rhino/jstype/JSType.java": { + "changes": [ + [ + 163 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/rhino/jstype/JSType.java\n+++ b/src/com/google/javascript/rhino/jstype/JSType.java\n@@ -160,7 +160,9 @@ public boolean isNoObjectType() {\n }\n \n public final boolean isEmptyType() {\n- return isNoType() || isNoObjectType() || isNoResolvedType();\n+ return isNoType() || isNoObjectType() || isNoResolvedType() ||\n+ (registry.getNativeFunctionType(\n+ JSTypeNative.LEAST_FUNCTION_TYPE) == this);\n }\n \n public boolean isNumberObjectType() {\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.TypeCheckTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected a warning", + "methodName": "testIssue301" + }, + { + "className": " com.google.javascript.rhino.jstype.FunctionTypeTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testEmptyFunctionTypes" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 2, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 3, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "mcAdd", + "retExpChange" + ], + "repairPatterns": [ + "expLogicExpand", + "singleLine" + ], + "repairTools": [], + "revisionId": "a857aec27d79fc234fddd4a72c1215af0251b2d8" + }, + { + "bugId": 85, + "changedFiles": { + "com/google/javascript/jscomp/UnreachableCodeElimination.java": { + "changes": [ + [ + 183 + ] + ], + "deletes": [ + [ + 153 + ], + [ + 154 + ], + [ + 155 + ], + [ + 156 + ], + [ + 157 + ], + [ + 158 + ], + [ + 160 + ], + [ + 161 + ], + [ + 162 + ], + [ + 163 + ], + [ + 164 + ], + [ + 165 + ], + [ + 166 + ] + ], + "inserts": [ + [ + 196 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/UnreachableCodeElimination.java\n+++ b/src/com/google/javascript/jscomp/UnreachableCodeElimination.java\n@@ -150,20 +150,7 @@ private Node tryRemoveUnconditionalBranching(Node n) {\n return n;\n }\n \n- if (n.getParent() == null) {\n- List> outEdges = gNode.getOutEdges();\n- if (outEdges.size() == 1) {\n- return tryRemoveUnconditionalBranching(outEdges.get(0).getDestination().getValue());\n- }\n- }\n switch (n.getType()) {\n- case Token.BLOCK:\n- if (n.hasChildren()) {\n- Node first = n.getFirstChild();\n- return tryRemoveUnconditionalBranching(first);\n- } else {\n- return tryRemoveUnconditionalBranching(ControlFlowAnalysis.computeFollowNode(n));\n- }\n case Token.RETURN:\n if (n.hasChildren()) {\n break;\n@@ -180,7 +167,7 @@ private Node tryRemoveUnconditionalBranching(Node n) {\n (n.getNext() == null || n.getNext().getType() == Token.FUNCTION)) {\n \n Preconditions.checkState(outEdges.get(0).getValue() == Branch.UNCOND);\n- Node fallThrough = tryRemoveUnconditionalBranching(computeFollowing(n));\n+ Node fallThrough = computeFollowing(n);\n Node nextCfgNode = outEdges.get(0).getDestination().getValue();\n if (nextCfgNode == fallThrough) {\n removeDeadExprStatementSafely(n);\n@@ -193,6 +180,13 @@ private Node tryRemoveUnconditionalBranching(Node n) {\n \n private Node computeFollowing(Node n) {\n Node next = ControlFlowAnalysis.computeFollowNode(n);\n+ while (next != null && next.getType() == Token.BLOCK) {\n+ if (next.hasChildren()) {\n+ next = next.getFirstChild();\n+ } else {\n+ next = computeFollowing(next);\n+ }\n+ }\n return next;\n }\n \n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.UnreachableCodeEliminationTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testCascadedRemovalOfUnlessUnconditonalJumps" + }, + { + "className": " com.google.javascript.jscomp.UnreachableCodeEliminationTest", + "error": "java.lang.RuntimeException", + "message": "INTERNAL COMPILER ERROR.", + "methodName": "testIssue311" + } + ], + "metrics": { + "chunks": 4, + "classes": 1, + "files": 1, + "linesAdd": 7, + "linesMod": 1, + "linesRem": 13, + "methods": 2, + "sizeInLines": 21, + "spreadAllLines": 29, + "spreadCodeOnly": 22 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "assignAdd", + "assignRem", + "condBranIfElseAdd", + "condBranRem", + "loopAdd", + "mcAdd", + "mcRem", + "retRem", + "varRem" + ], + "repairPatterns": [ + "condBlockOthersAdd", + "condBlockRem", + "missNullCheckN", + "unwrapMethod" + ], + "repairTools": [], + "revisionId": "21a2103d7fa5664ea324ef9ee25b4a8922e50955" + }, + { + "bugId": 86, + "changedFiles": { + "com/google/javascript/jscomp/NodeUtil.java": { + "changes": [ + [ + 2465 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/NodeUtil.java\n+++ b/src/com/google/javascript/jscomp/NodeUtil.java\n@@ -2462,7 +2462,7 @@ static boolean evaluatesToLocalValue(Node value, Predicate locals) {\n // TODO(nicksantos): This needs to be changed so that it\n // returns true iff we're sure the value was never aliased from inside\n // the constructor (similar to callHasLocalResult)\n- return true;\n+ return false;\n case Token.FUNCTION:\n case Token.REGEXP:\n case Token.ARRAYLIT:\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.NodeUtilTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testLocalValue1" + }, + { + "className": " com.google.javascript.jscomp.PureFunctionIdentifierTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<[A]> but was:<[A, f]>", + "methodName": "testLocalizedSideEffects8" + }, + { + "className": " com.google.javascript.jscomp.PureFunctionIdentifierTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<[A]> but was:<[A, f]>", + "methodName": "testLocalizedSideEffects9" + }, + { + "className": " com.google.javascript.jscomp.PureFunctionIdentifierTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<[externObjSEThis]> but was:<[externObjSEThis, NEW STRING externObjSEThisMethod]>", + "methodName": "testAnnotationInExterns_new4" + }, + 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"closure-compiler", + "project": "Closure", + "repairActions": [ + "retExpChange" + ], + "repairPatterns": [ + "constChange", + "expLogicMod", + "singleLine" + ], + "repairTools": [ + "rtssFix" + ], + "revisionId": "0907b6618a60b2de23c8f7ec2217a37dc5e9a091" + }, + { + "bugId": 84, + "changedFiles": { + "com/google/javascript/jscomp/parsing/IRFactory.java": { + "inserts": [ + [ + 341 + ], + [ + 797, + 798 + ], + [ + -1 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/parsing/IRFactory.java\n+++ b/src/com/google/javascript/jscomp/parsing/IRFactory.java\n@@ -338,6 +338,13 @@ Node processArrayLiteral(ArrayLiteral literalNode) {\n @Override\n Node processAssignment(Assignment assignmentNode) {\n Node assign = processInfixExpression(assignmentNode);\n+ Node target = assign.getFirstChild();\n+ if (!validAssignmentTarget(target)) {\n+ errorReporter.error(\n+ \"invalid assignment target\",\n+ sourceName,\n+ target.getLineno(), \"\", 0);\n+ }\n return assign;\n }\n \n@@ -794,6 +801,17 @@ Node processUnaryExpression(UnaryExpression exprNode) {\n operand.setDouble(-operand.getDouble());\n return operand;\n } else {\n+ if (type == Token.INC || type == Token.DEC) {\n+ if (!validAssignmentTarget(operand)) {\n+ String msg = (type == Token.INC)\n+ ? \"invalid increment target\"\n+ : \"invalid decrement target\";\n+ errorReporter.error(\n+ msg,\n+ sourceName,\n+ operand.getLineno(), \"\", 0);\n+ }\n+ }\n \n Node node = newNode(type, operand);\n if (exprNode.isPostfix()) {\n@@ -803,6 +821,15 @@ Node processUnaryExpression(UnaryExpression exprNode) {\n }\n }\n \n+ private boolean validAssignmentTarget(Node target) {\n+ switch (target.getType()) {\n+ case Token.NAME:\n+ case Token.GETPROP:\n+ case Token.GETELEM:\n+ return true;\n+ }\n+ return false;\n+ }\n \n @Override\n Node processVariableDeclaration(VariableDeclaration declarationNode) {\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.parsing.ParserTest", + "error": 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a/src/com/google/javascript/jscomp/CollapseProperties.java\n+++ b/src/com/google/javascript/jscomp/CollapseProperties.java\n@@ -481,6 +481,9 @@ private void updateSimpleDeclaration(String alias, Name refName, Ref ref) {\n Node greatGramps = gramps.getParent();\n Node greatGreatGramps = greatGramps.getParent();\n \n+ if (rvalue != null && rvalue.getType() == Token.FUNCTION) {\n+ checkForHosedThisReferences(rvalue, refName.docInfo, refName);\n+ }\n \n // Create the new alias node.\n Node nameNode = NodeUtil.newName(\n--- a/src/com/google/javascript/jscomp/GlobalNamespace.java\n+++ b/src/com/google/javascript/jscomp/GlobalNamespace.java\n@@ -917,7 +917,7 @@ boolean canCollapseUnannotatedChildNames() {\n }\n \n // If this is aliased, then its properties can't be collapsed either.\n- if (type != Type.FUNCTION && aliasingGets > 0) {\n+ if (aliasingGets > 0) {\n return false;\n }\n \n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.CollapsePropertiesTest", + "error": 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isVariableReadBeforeKill(rhs, variable);\n+ if (state == VariableLiveness.READ) {\n+ return state;\n+ }\n return VariableLiveness.KILL;\n } else {\n return VariableLiveness.READ;\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.CommandLineRunnerTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testIssue297" + }, + { + "className": " com.google.javascript.jscomp.DeadAssignmentsEliminationTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testIssue297a" + }, + { + "className": " com.google.javascript.jscomp.DeadAssignmentsEliminationTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testIssue297b" + }, + { + "className": " com.google.javascript.jscomp.DeadAssignmentsEliminationTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testIssue297c" + }, + { + "className": " 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"revisionId": "6a17da87f9e132bdc147b33223826da040c77a6b" + }, + { + "bugId": 87, + "changedFiles": { + "com/google/javascript/jscomp/PeepholeSubstituteAlternateSyntax.java": { + "changes": [ + [ + 533 + ] + ], + "inserts": [ + [ + 523, + 524, + 525, + 526, + 527, + 528, + 529, + 530, + 531, + 532, + 533 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/PeepholeSubstituteAlternateSyntax.java\n+++ b/src/com/google/javascript/jscomp/PeepholeSubstituteAlternateSyntax.java\n@@ -520,17 +520,29 @@ private boolean isFoldableExpressBlock(Node n) {\n if (n.getType() == Token.BLOCK) {\n if (n.hasOneChild()) {\n Node maybeExpr = n.getFirstChild();\n+ if (maybeExpr.getType() == Token.EXPR_RESULT) {\n // IE has a bug where event handlers behave differently when\n // their return value is used vs. when their return value is in\n // an EXPR_RESULT. It's pretty freaking weird. See:\n // http://code.google.com/p/closure-compiler/issues/detail?id=291\n // We try to detect this case, and not fold EXPR_RESULTs\n // into other expressions.\n+ if (maybeExpr.getFirstChild().getType() == Token.CALL) {\n+ Node calledFn = maybeExpr.getFirstChild().getFirstChild();\n \n // We only have to worry about methods with an implicit 'this'\n // param, or this doesn't happen.\n+ if (calledFn.getType() == Token.GETELEM) {\n+ return false;\n+ } else if (calledFn.getType() == Token.GETPROP &&\n+ calledFn.getLastChild().getString().startsWith(\"on\")) {\n+ return false;\n+ }\n+ }\n \n- return NodeUtil.isExpressionNode(maybeExpr);\n+ return true;\n+ }\n+ return false;\n }\n }\n \n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.PeepholeSubstituteAlternateSyntaxTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testIssue291" + } + ], + "metrics": { + "chunks": 4, + "classes": 1, + "files": 1, + "linesAdd": 12, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 13, + "spreadAllLines": 10, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "assignAdd", + "condBranIfAdd", + "condBranIfElseAdd", + "mcAdd", + "mcRem", + "retBranchAdd", + "retExpChange", + "varAdd" + ], + "repairPatterns": [ + "condBlockRetAdd", + "wrongComp" + ], + "repairTools": [], + "revisionId": "f64a3f51bd346547ce6e1edb30601df73dff27d9" + }, + { + "bugId": 92, + "changedFiles": { + "com/google/javascript/jscomp/ProcessClosurePrimitives.java": { + "changes": [ + [ + 789 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/ProcessClosurePrimitives.java\n+++ b/src/com/google/javascript/jscomp/ProcessClosurePrimitives.java\n@@ -786,7 +786,7 @@ void replace() {\n } else {\n // In this case, the name was implicitly provided by two independent\n // modules. We need to move this code up to a common module.\n- int indexOfDot = namespace.indexOf('.');\n+ int indexOfDot = namespace.lastIndexOf('.');\n if (indexOfDot == -1) {\n // Any old place is fine.\n compiler.getNodeForCodeInsertion(minimumModule)\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.ProcessClosurePrimitivesTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testProvideInIndependentModules4" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "assignExpChange", + "mcRepl" + ], + "repairPatterns": [ + "singleLine", + "wrongMethodRef" + ], + "repairTools": [], + "revisionId": "8980b60033b1c6853cbca593ec89d3d332adf7dc" + }, + { + "bugId": 95, + "changedFiles": { + "com/google/javascript/jscomp/TypedScopeCreator.java": { + "inserts": [ + [ + 899, + 900, + 901, + 902, + 903, + 904 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/TypedScopeCreator.java\n+++ b/src/com/google/javascript/jscomp/TypedScopeCreator.java\n@@ -896,9 +896,16 @@ void defineSlot(Node n, Node parent, JSType type, boolean inferred) {\n // scope where the root object appears. This helps out people\n // who declare \"global\" names in an anonymous namespace.\n Scope scopeToDeclareIn = scope;\n+ if (n.getType() == Token.GETPROP && !scope.isGlobal() &&\n+ isQnameRootedInGlobalScope(n)) {\n+ Scope globalScope = scope.getGlobalScope();\n \n // don't try to declare in the global scope if there's\n // already a symbol there with this name.\n+ if (!globalScope.isDeclared(variableName, false)) {\n+ scopeToDeclareIn = scope.getGlobalScope();\n+ }\n+ }\n \n // declared in closest scope?\n if (scopeToDeclareIn.isDeclared(variableName, false)) {\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.TypeCheckTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected a warning", + "methodName": "testQualifiedNameInference5" + }, + { + "className": " com.google.javascript.jscomp.TypedScopeCreatorTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testGlobalQualifiedNameInLocalScope" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 7, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 7, + "spreadAllLines": 3, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "assignAdd", + "condBranIfAdd", + "mcAdd", + "varAdd" + ], + "repairPatterns": [ + "condBlockOthersAdd", + "missComp" + ], + "repairTools": [], + "revisionId": "f6607996d6d3bd6820ce3848d147991b27600a12" + }, + { + "bugId": 90, + "changedFiles": { + "com/google/javascript/jscomp/FunctionTypeBuilder.java": { + "changes": [ + [ + 184 + ] + ] + }, + "com/google/javascript/rhino/jstype/FunctionType.java": { + "inserts": [ + [ + 880 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/FunctionTypeBuilder.java\n+++ b/src/com/google/javascript/jscomp/FunctionTypeBuilder.java\n@@ -181,7 +181,7 @@ public boolean apply(JSType type) {\n // create interfaces JSType, ObjectType, FunctionType etc and have\n // separate implementation instead of the class hierarchy, so that\n // union types can also be object types, etc.\n- if (!type.isSubtype(\n+ if (!type.restrictByNotNullOrUndefined().isSubtype(\n typeRegistry.getNativeType(OBJECT_TYPE))) {\n reportWarning(THIS_TYPE_NON_OBJECT, type.toString());\n return false;\n--- a/src/com/google/javascript/rhino/jstype/FunctionType.java\n+++ b/src/com/google/javascript/rhino/jstype/FunctionType.java\n@@ -877,6 +877,9 @@ JSType resolveInternal(ErrorReporter t, StaticScope scope) {\n // mean \"nullable Foo\". For certain tags (like @extends) we de-nullify\n // the name for them.\n JSType maybeTypeOfThis = safeResolve(typeOfThis, t, scope);\n+ if (maybeTypeOfThis != null) {\n+ maybeTypeOfThis = maybeTypeOfThis.restrictByNotNullOrUndefined();\n+ }\n if (maybeTypeOfThis instanceof ObjectType) {\n typeOfThis = (ObjectType) maybeTypeOfThis;\n }\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.TypeCheckTest", + "error": "junit.framework.AssertionFailedError", + "message": "unexpected warnings(s):", + "methodName": "testBackwardsTypedefUse8" + }, + { + "className": " com.google.javascript.jscomp.TypeCheckTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected:<[actual parameter 1 of g does not match formal parameter", + "methodName": "testBackwardsTypedefUse9" + } + ], + "metrics": { + "chunks": 2, + "classes": 2, + "files": 2, + "linesAdd": 3, + "linesMod": 1, + "linesRem": 0, + "methods": 2, + "sizeInLines": 4, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "assignAdd", + "condBranIfAdd", + "condExpMod", + "mcAdd" + ], + "repairPatterns": [ + "condBlockOthersAdd", + "missComp", + "missNullCheckN" + ], + "repairTools": [], + "revisionId": "c5e143f7df0c3d73f6634488cac8ad8e7054fe05" + }, + { + "bugId": 94, + "changedFiles": { + "com/google/javascript/jscomp/NodeUtil.java": { + "inserts": [ + [ + 327, + 328, + 329, + 330, + 331, + 332, + 333, + 334, + 335 + ], + [ + 333, + 334, + 335 + ], + [ + 335, + 336, + 337 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/NodeUtil.java\n+++ b/src/com/google/javascript/jscomp/NodeUtil.java\n@@ -326,14 +326,33 @@ static boolean isValidDefineValue(Node val, Set defines) {\n return true;\n \n // Binary operators are only valid if both children are valid.\n+ case Token.ADD:\n case Token.BITAND:\n case Token.BITNOT:\n case Token.BITOR:\n case Token.BITXOR:\n+ case Token.DIV:\n+ case Token.EQ:\n+ case Token.GE:\n+ case Token.GT:\n+ case Token.LE:\n+ case Token.LSH:\n+ case Token.LT:\n+ case Token.MOD:\n+ case Token.MUL:\n+ case Token.NE:\n+ case Token.RSH:\n+ case Token.SHEQ:\n+ case Token.SHNE:\n+ case Token.SUB:\n+ case Token.URSH:\n+ return isValidDefineValue(val.getFirstChild(), defines)\n+ && isValidDefineValue(val.getLastChild(), defines);\n \n // Uniary operators are valid if the child is valid.\n case Token.NOT:\n case Token.NEG:\n+ case Token.POS:\n return isValidDefineValue(val.getFirstChild(), defines);\n \n // Names are valid if and only if they are defines themselves.\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.NodeUtilTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testValidDefine" + }, + { + "className": " com.google.javascript.jscomp.ProcessDefinesTest", + "error": "junit.framework.AssertionFailedError", + "message": "Unexpected error(s): JSC_INVALID_DEFINE_INIT_ERROR. illegal initialization of @define variable DEF_OVERRIDE_STRING at testcode line 1 : 54 expected:<0> but was:<1>", + "methodName": "testOverridingString1" + }, + { + "className": " com.google.javascript.jscomp.ProcessDefinesTest", + "error": "junit.framework.AssertionFailedError", + "message": "Unexpected error(s): JSC_INVALID_DEFINE_INIT_ERROR. illegal initialization of @define variable DEF_OVERRIDE_STRING at testcode line 1 : 54 expected:<0> but was:<1>", + "methodName": "testOverridingString3" + } + ], + "metrics": { + "chunks": 3, + "classes": 1, + "files": 1, + "linesAdd": 19, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 19, + "spreadAllLines": 8, + "spreadCodeOnly": 6 + }, + "observations": "Many \"case\" conditions were added, sharing the same consequent action. Equivalent to \"if ( x || y || z || ... ) then do this\". These blocks are inserted as extra switch clauses. Should be a \"Missing Condition\", \"Missing Block\" or both?", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condBranCaseAdd", + "mcAdd", + "retBranchAdd" + ], + "repairPatterns": [ + "condBlockRetAdd", + "expLogicExpand" + ], + "repairTools": [], + "revisionId": "7cc748592670105f9d783b1b85f0f27e938db4ff" + }, + { + "bugId": 91, + "changedFiles": { + "com/google/javascript/jscomp/CheckGlobalThis.java": { + "inserts": [ + [ + 113, + 114, + 115 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/CheckGlobalThis.java\n+++ b/src/com/google/javascript/jscomp/CheckGlobalThis.java\n@@ -112,6 +112,15 @@ public boolean shouldTraverse(NodeTraversal t, Node n, Node parent) {\n }\n \n // Don't traverse functions that are getting lent to a prototype.\n+ Node gramps = parent.getParent();\n+ if (NodeUtil.isObjectLitKey(parent, gramps)) {\n+ JSDocInfo maybeLends = gramps.getJSDocInfo();\n+ if (maybeLends != null &&\n+ maybeLends.getLendsName() != null &&\n+ maybeLends.getLendsName().endsWith(\".prototype\")) {\n+ return false;\n+ }\n+ }\n }\n \n if (parent != null && parent.getType() == Token.ASSIGN) {\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.CheckGlobalThisTest", + "error": "junit.framework.AssertionFailedError", + "message": "Unexpected error(s): JSC_USED_GLOBAL_THIS. dangerous use of the global this object at testcode line 1 : 110 expected:<0> but was:<1>", + "methodName": "testLendsAnnotation3" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 9, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 9, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "assignAdd", + "condBranIfAdd", + "mcAdd", + "retBranchAdd", + "varAdd" + ], + "repairPatterns": [ + "condBlockOthersAdd", + "condBlockRetAdd", + "missComp" + ], + "repairTools": [], + "revisionId": "7eb2d84de101a125d41d3a1157f4eed789ca4a0d" + }, + { + "bugId": 93, + "changedFiles": { + "com/google/javascript/jscomp/ProcessClosurePrimitives.java": { + "changes": [ + [ + 789 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/ProcessClosurePrimitives.java\n+++ b/src/com/google/javascript/jscomp/ProcessClosurePrimitives.java\n@@ -786,7 +786,7 @@ void replace() {\n } else {\n // In this case, the name was implicitly provided by two independent\n // modules. We need to move this code up to a common module.\n- int indexOfDot = namespace.indexOf('.');\n+ int indexOfDot = namespace.lastIndexOf('.');\n if (indexOfDot == -1) {\n // Any old place is fine.\n compiler.getNodeForCodeInsertion(minimumModule)\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.ProcessClosurePrimitivesTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testProvideInIndependentModules4" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Same change/commit as #92.", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "assignExpChange", + "mcRepl" + ], + "repairPatterns": [ + "singleLine", + "wrongMethodRef" + ], + "repairTools": [], + "revisionId": "9d1e18e87a41f2a610ed70f3a1d57abbce7a1cd7" + }, + { + "bugId": 97, + "changedFiles": { + "com/google/javascript/jscomp/PeepholeFoldConstants.java": { + "changes": [ + [ + 698 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/PeepholeFoldConstants.java\n+++ b/src/com/google/javascript/jscomp/PeepholeFoldConstants.java\n@@ -695,7 +695,8 @@ private Node tryFoldShift(Node n, Node left, Node right) {\n // JavaScript handles zero shifts on signed numbers differently than\n // Java as an Java int can not represent the unsigned 32-bit number\n // where JavaScript can so use a long here.\n- result = lvalInt >>> rvalInt;\n+ long lvalLong = lvalInt & 0xffffffffL;\n+ result = lvalLong >>> rvalInt;\n break;\n default:\n throw new AssertionError(\"Unknown shift operator: \" +\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.PeepholeFoldConstantsTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testFoldBitShifts" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 1, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 2, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "assignAdd", + "assignExpChange", + "varAdd" + ], + "repairPatterns": [ + "expArithMod", + "missComp", + "singleLine" + ], + "repairTools": [], + "revisionId": "ee749e286b477f8d6f53ff5960a38453baf50f31" + }, + { + "bugId": 96, + "changedFiles": { + "com/google/javascript/jscomp/TypeCheck.java": { + "changes": [ + [ + 1409 + ] + ], + "inserts": [ + [ + 1410, + 1411, + 1412 + ], + [ + 1413 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/TypeCheck.java\n+++ b/src/com/google/javascript/jscomp/TypeCheck.java\n@@ -1406,10 +1406,13 @@ private void visitParameterList(NodeTraversal t, Node call,\n Node parameter = null;\n Node argument = null;\n while (arguments.hasNext() &&\n- parameters.hasNext()) {\n+ (parameters.hasNext() ||\n+ parameter != null && parameter.isVarArgs())) {\n // If there are no parameters left in the list, then the while loop\n // above implies that this must be a var_args function.\n+ if (parameters.hasNext()) {\n parameter = parameters.next();\n+ }\n argument = arguments.next();\n ordinal++;\n \n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.TypeCheckTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected a warning", + "methodName": "testFunctionArguments16" + } + ], + "metrics": { + "chunks": 3, + "classes": 1, + "files": 1, + "linesAdd": 3, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 4, + "spreadAllLines": 3, + "spreadCodeOnly": 1 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condBranIfAdd", + "loopCondChange", + "mcAdd" + ], + "repairPatterns": [ + "expLogicExpand", + "missNullCheckN", + "wrapsIf" + ], + "repairTools": [], + "revisionId": "807aaf2569e9eb09761068c5aeb95654daea30d9" + }, + { + "bugId": 101, + "changedFiles": { + "com/google/javascript/jscomp/CommandLineRunner.java": { + "changes": [ + [ + 434 + ] + ], + "deletes": [ + [ + 433 + ], + [ + 435 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/CommandLineRunner.java\n+++ b/src/com/google/javascript/jscomp/CommandLineRunner.java\n@@ -430,10 +430,8 @@ protected CompilerOptions createOptions() {\n for (FormattingOption formattingOption : flags.formatting) {\n formattingOption.applyToOptions(options);\n }\n- if (flags.process_closure_primitives) {\n- options.closurePass = true;\n- }\n \n+ options.closurePass = flags.process_closure_primitives;\n initOptionsFromFlags(options);\n return options;\n }\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.CommandLineRunnerTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testProcessClosurePrimitives" + } + ], + "metrics": { + "chunks": 2, + 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(!(pType == Token.BLOCK ||\n+ pType == Token.SCRIPT ||\n+ pType == Token.NAME ||\n+ pType == Token.ASSIGN)) {\n+ return false;\n+ }\n }\n \n if (parent != null && parent.getType() == Token.ASSIGN) {\n@@ -143,7 +150,7 @@ private boolean shouldReportThis(Node n, Node parent) {\n }\n \n // Also report a THIS with a property access.\n- return false;\n+ return parent != null && NodeUtil.isGet(parent);\n }\n \n /**\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.CheckGlobalThisTest", + "error": "junit.framework.AssertionFailedError", + "message": "Unexpected error(s): JSC_USED_GLOBAL_THIS. dangerous use of the global this object at testcode line 1 : 35 expected:<0> but was:<1>", + "methodName": "testStaticFunction6" + }, + { + "className": " com.google.javascript.jscomp.CheckGlobalThisTest", + "error": "junit.framework.AssertionFailedError", + "message": "Unexpected error(s): JSC_USED_GLOBAL_THIS. dangerous use of the global this object at testcode line 1 : 41 expected:<0> but was:<1>", + "methodName": "testStaticFunction7" + }, + { + "className": " com.google.javascript.jscomp.CheckGlobalThisTest", + "error": "junit.framework.AssertionFailedError", + "message": "There should be one error. expected:<1> but was:<0>", + "methodName": "testStaticFunction8" + }, + { + "className": " com.google.javascript.jscomp.CheckGlobalThisTest", + "error": "junit.framework.AssertionFailedError", + "message": "There should be one error. expected:<1> but was:<0>", + "methodName": "testGlobalThis7" + }, + { + "className": " com.google.javascript.jscomp.CheckGlobalThisTest", + "error": "junit.framework.AssertionFailedError", + "message": "Unexpected error(s): JSC_USED_GLOBAL_THIS. dangerous use of the global this object at testcode line 1 : 39 expected:<0> but was:<1>", + "methodName": "testStaticMethod2" + }, + { + "className": " com.google.javascript.jscomp.CheckGlobalThisTest", + "error": "junit.framework.AssertionFailedError", + "message": "Unexpected 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"sizeInLines": 8, + "spreadAllLines": 47, + "spreadCodeOnly": 34 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "assignAdd", + "condBranIfAdd", + "mcAdd", + "retBranchAdd", + "retExpChange", + "varAdd" + ], + "repairPatterns": [ + "condBlockRetAdd", + "missNullCheckN", + "wrongComp" + ], + "repairTools": [], + "revisionId": "6d00ac1a68612aade8a19d7ecc9b180f00ae5234" + }, + { + "bugId": 98, + "changedFiles": { + "com/google/javascript/jscomp/ReferenceCollectingCallback.java": { + "inserts": [ + [ + 359, + 360, + 361, + 362 + ], + [ + -1 + ], + [ + 556, + 557, + 558, + 559, + 560, + 561, + 562 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/ReferenceCollectingCallback.java\n+++ b/src/com/google/javascript/jscomp/ReferenceCollectingCallback.java\n@@ -354,15 +354,23 @@ Reference getInitializingReferenceForConstants() {\n boolean isAssignedOnceInLifetime() {\n Reference ref = getOneAndOnlyAssignment();\n if (ref == null) {\n return false;\n }\n \n // Make sure this assignment is not in a loop.\n+ for (BasicBlock block = ref.getBasicBlock();\n+ block != null; block = block.getParent()) {\n+ if (block.isFunction) {\n+ break;\n+ } else if (block.isLoop) {\n+ return false;\n+ }\n+ }\n \n return true;\n }\n \n /**\n * @return The one and only assignment. Returns if there are 0 or 2+\n * assignments.\n */\n@@ -523,41 +531,52 @@ Scope getScope() {\n public String getSourceName() {\n return sourceName;\n }\n }\n \n /**\n * Represents a section of code that is uninterrupted by control structures\n * (conditional or iterative logic).\n */\n static final class BasicBlock {\n \n private final BasicBlock parent;\n \n /**\n * Determines whether the block may not be part of the normal control flow,\n * but instead \"hoisted\" to the top of the scope.\n */\n private final boolean isHoisted;\n \n /**\n * Whether this block denotes a function scope.\n */\n+ private final boolean isFunction;\n \n /**\n * Whether this block denotes a loop.\n */\n+ private final boolean isLoop;\n \n /**\n * Creates a new block.\n * @param parent The containing block.\n * @param root The root node of the block.\n */\n BasicBlock(BasicBlock parent, Node root) {\n this.parent = parent;\n \n // only named functions may be hoisted.\n this.isHoisted = NodeUtil.isHoistedFunctionDeclaration(root);\n \n+ this.isFunction = root.getType() == Token.FUNCTION;\n \n+ if (root.getParent() != null) {\n+ int pType = root.getParent().getType();\n+ this.isLoop = pType == Token.DO ||\n+ pType == Token.WHILE ||\n+ pType == Token.FOR;\n+ } else {\n+ this.isLoop = false;\n+ }\n }\n \n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.InlineVariablesTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testNoInlineAliasesInLoop" + } + ], + "metrics": { + "chunks": 5, + "classes": 2, + "files": 1, + "linesAdd": 19, + "linesMod": 0, + "linesRem": 0, + "methods": 2, + "sizeInLines": 19, + "spreadAllLines": 201, + "spreadCodeOnly": 127 + }, + "observations": "New class attributes were added.", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "assignAdd", + "condBranIfElseAdd", + "loopAdd", + "mcAdd", + "retBranchAdd", + "varAdd" + ], + "repairPatterns": [ + 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subproperty.\n+ if (NodeUtil.isGet(lhs)) {\n if (lhs.getType() == Token.GETPROP &&\n lhs.getLastChild().getString().equals(\"prototype\")) {\n return false;\n }\n- if (lhs.getQualifiedName() != null && lhs.getQualifiedName().contains(\".prototype.\")) {\n+ Node llhs = lhs.getFirstChild();\n+ if (llhs.getType() == Token.GETPROP &&\n+ llhs.getLastChild().getString().equals(\"prototype\")) {\n return false;\n }\n+ }\n }\n }\n \n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.CheckGlobalThisTest", + "error": "junit.framework.AssertionFailedError", + "message": "There should be one error. expected:<1> but was:<0>", + "methodName": "testPropertyOfMethod" + }, + { + "className": " com.google.javascript.jscomp.CheckGlobalThisTest", + "error": "junit.framework.AssertionFailedError", + "message": "Unexpected error(s): JSC_USED_GLOBAL_THIS. dangerous use of the global this object at testcode line 1 : 39 expected:<0> but was:<1>", + "methodName": "testMethod4" + }, + { + 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"com/google/javascript/rhino/jstype/UnionType.java": { + "changes": [ + [ + 291 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/rhino/jstype/UnionType.java\n+++ b/src/com/google/javascript/rhino/jstype/UnionType.java\n@@ -288,7 +288,7 @@ JSType meet(JSType that) {\n builder.addAlternate(that);\n }\n JSType result = builder.build();\n- if (result != null) {\n+ if (!result.isNoType()) {\n return result;\n } else if (this.isObject() && that.isObject()) {\n return getNativeType(JSTypeNative.NO_OBJECT_TYPE);\n", + "failingTests": [ + { + "className": " com.google.javascript.rhino.jstype.UnionTypeTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected: but was:", + "methodName": "testGreatestSubtypeUnionTypes5" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "A Null-Check was removed and replaced by another condition.", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condExpMod", + "mcAdd" + ], + "repairPatterns": [ + "expLogicMod", + "singleLine" + ], + "repairTools": [], + "revisionId": "67289ae4cbaba3ae70cd2e8fb92f3f2898039dfb" + }, + { + "bugId": 105, + "changedFiles": { + "com/google/javascript/jscomp/FoldConstants.java": { + "changes": [ + [ + 1477 + ], + [ + 1483 + ], + [ + 1488 + ], + [ + 1492 + ], + [ + 1500 + ] + ], + "inserts": [ + [ + 1484 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/FoldConstants.java\n+++ b/src/com/google/javascript/jscomp/FoldConstants.java\n@@ -1474,22 +1474,24 @@ void tryFoldStringJoin(NodeTraversal t, Node n, Node left, Node right,\n \n String joinString = NodeUtil.getStringValue(right);\n List arrayFoldedChildren = Lists.newLinkedList();\n- StringBuilder sb = new StringBuilder();\n+ StringBuilder sb = null;\n int foldedSize = 0;\n Node elem = arrayNode.getFirstChild();\n // Merges adjacent String nodes.\n while (elem != null) {\n if (NodeUtil.isImmutableValue(elem)) {\n- if (sb.length() > 0) {\n+ if (sb == null) {\n+ sb = new StringBuilder();\n+ } else {\n sb.append(joinString);\n }\n sb.append(NodeUtil.getStringValue(elem));\n } else {\n- if (sb.length() > 0) {\n+ if (sb != null) {\n // + 2 for the quotes.\n foldedSize += sb.length() + 2;\n arrayFoldedChildren.add(Node.newString(sb.toString()));\n- sb = new StringBuilder();\n+ sb = null;\n }\n foldedSize += InlineCostEstimator.getCost(elem);\n arrayFoldedChildren.add(elem);\n@@ -1497,7 +1499,7 @@ void tryFoldStringJoin(NodeTraversal t, Node n, Node left, Node right,\n elem = elem.getNext();\n }\n \n- if (sb.length() > 0) {\n+ if (sb != null) {\n // + 2 for the quotes.\n foldedSize += sb.length() + 2;\n arrayFoldedChildren.add(Node.newString(sb.toString()));\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.FoldConstantsTest", + "error": 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[ + [ + 189 + ], + [ + 191 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/GlobalNamespace.java\n+++ b/src/com/google/javascript/jscomp/GlobalNamespace.java\n@@ -904,6 +904,10 @@ boolean canCollapseUnannotatedChildNames() {\n // Don't try to collapse if the one global set is a twin reference.\n // We could theoretically handle this case in CollapseProperties, but\n // it's probably not worth the effort.\n+ Preconditions.checkNotNull(declaration);\n+ if (declaration.getTwin() != null) {\n+ return false;\n+ }\n \n if (isClassOrEnum) {\n return true;\n--- a/src/com/google/javascript/rhino/JSDocInfoBuilder.java\n+++ b/src/com/google/javascript/rhino/JSDocInfoBuilder.java\n@@ -186,9 +186,7 @@ public void markName(String name, int lineno, int charno) {\n * @return {@code true} if the description was recorded.\n */\n public boolean recordBlockDescription(String description) {\n- if (parseDocumentation) {\n populated = true;\n- }\n return currentInfo.documentBlock(description);\n }\n \n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.CheckSideEffectsTest", + "error": "junit.framework.AssertionFailedError", + "message": "Unexpected error(s): JSC_USELESS_CODE. Suspicious code. This code lacks side-effects. 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PropogateConstantAnnotations(compiler, assertOnChange)\n .process(externs, root);\n }\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.CompilerRunnerTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testIssue115" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 1, + "linesMod": 0, + "linesRem": 1, + "methods": 1, + "sizeInLines": 2, + "spreadAllLines": 5, + "spreadCodeOnly": 5 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "mcMove" + ], + "repairPatterns": [ + "codeMove", + "singleLine" + ], + "repairTools": [], + "revisionId": "d48c365ba8251057a71a2e2b7aabff640209e31b" + }, + { + "bugId": 103, + "changedFiles": { + "com/google/javascript/jscomp/ControlFlowAnalysis.java": { + "inserts": [ + [ + 886, + 887, + 888, + 889, + 890, + 891, + 892, + 893, + 894 + ] + ] + }, + "com/google/javascript/jscomp/DisambiguateProperties.java": { + "inserts": [ + [ + 761, + 762, + 763, + 764, + 765, + 766 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/ControlFlowAnalysis.java\n+++ b/src/com/google/javascript/jscomp/ControlFlowAnalysis.java\n@@ -891,6 +891,7 @@ private static boolean mayThrowException(Node n) {\n case Token.ASSIGN:\n case Token.INC:\n case Token.DEC:\n+ case Token.INSTANCEOF:\n return true;\n case Token.FUNCTION:\n return false;\n--- a/src/com/google/javascript/jscomp/DisambiguateProperties.java\n+++ b/src/com/google/javascript/jscomp/DisambiguateProperties.java\n@@ -760,9 +760,16 @@ public JSTypeSystem(AbstractCompiler compiler) {\n }\n // If the property does not exist on the referenced type but the original\n // type is an object type, see if any subtype has the property.\n+ if (foundType == null) {\n+ ObjectType maybeType = ObjectType.cast(\n+ registry.getGreatestSubtypeWithProperty(type, field));\n // getGreatestSubtypeWithProperty does not guarantee that the property\n // is defined on the returned type, it just indicates that it might be,\n // so we have to double check.\n+ if (maybeType != null && maybeType.hasOwnProperty(field)) {\n+ foundType = maybeType;\n+ }\n+ }\n return foundType;\n }\n \n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.CheckUnreachableCodeTest", + "error": "junit.framework.AssertionFailedError", + "message": "Unexpected error(s): JSC_UNREACHABLE_CODE. unreachable code at testcode line 1 expected:<0> but was:<1>", + "methodName": "testInstanceOfThrowsException" + }, + { + "className": " com.google.javascript.jscomp.ControlFlowAnalysisTest", + "error": "junit.framework.AssertionFailedError", + "message": "No cross edges found", + "methodName": "testInstanceOf" + }, + { + "className": " com.google.javascript.jscomp.DisambiguatePropertiesTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testSupertypeReferenceOfSubtypeProperty" + } + ], + "metrics": { + "chunks": 3, + "classes": 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But shut off the i18n warnings,\n // because the user didn't really ask for i18n.\n options.messageBundle = new EmptyMessageBundle();\n+ options.setWarningLevel(JsMessageVisitor.MSG_CONVENTIONS, CheckLevel.OFF);\n }\n \n return options;\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.CommandLineRunnerTest", + "error": "junit.framework.AssertionFailedError", + "message": "Expected no warnings or errors", + "methodName": "testGetMsgWiringNoWarnings" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 1, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "mcAdd" + ], + "repairPatterns": [ + "missComp", + "singleLine" + ], + "repairTools": [], + "revisionId": "49e9565febba904484396e2aef7dbe86f55e9cc5" + }, + { + "bugId": 108, + "changedFiles": { + "com/google/javascript/jscomp/ScopedAliases.java": { + "changes": [ + [ + 581 + ] + ], + "inserts": [ + [ + -1 + ], + [ + 315, + 316, + 317, + 318, + 319, + 320 + ], + [ + 432 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/ScopedAliases.java\n+++ b/src/com/google/javascript/jscomp/ScopedAliases.java\n@@ -256,6 +256,7 @@ public void applyAlias() {\n private final Map aliases = Maps.newHashMap();\n \n // Also temporary and cleared for each scope.\n+ private final Set injectedDecls = Sets.newHashSet();\n \n // Suppose you create an alias.\n // var x = goog.x;\n@@ -313,6 +314,7 @@ public void exitScope(NodeTraversal t) {\n \n if (t.getScopeDepth() == 2) {\n renameNamespaceShadows(t);\n+ injectedDecls.clear();\n aliases.clear();\n forbiddenLocals.clear();\n transformation = null;\n@@ -429,6 +431,7 @@ private void findAliases(NodeTraversal t) {\n } else {\n grandparent.addChildBefore(newDecl, varNode);\n }\n+ injectedDecls.add(newDecl.getFirstChild());\n }\n \n // Rewrite \"var name = EXPR;\" to \"var name = $jscomp.scope.name;\"\n@@ -578,7 +581,7 @@ public void visit(NodeTraversal t, Node n, Node parent) {\n // When we inject declarations, we duplicate jsdoc. Make sure\n // we only process that jsdoc once.\n JSDocInfo info = n.getJSDocInfo();\n- if (info != null) {\n+ if (info != null && !injectedDecls.contains(n)) {\n for (Node node : info.getTypeNodes()) {\n fixTypeNode(node);\n }\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.ScopedAliasesTest", + "error": "java.lang.IllegalStateException", + "message": "", + "methodName": "testIssue1144" + } + ], + "metrics": { + "chunks": 4, + "classes": 1, + "files": 1, + "linesAdd": 3, + "linesMod": 1, + "linesRem": 0, + "methods": 3, + "sizeInLines": 4, + "spreadAllLines": 322, + "spreadCodeOnly": 230 + }, + "observations": "Added new class attribute and its initialization. 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So climb the prototype chain and find out where\n@@ -753,18 +765,6 @@ String getReadableJSTypeName(Node n, boolean dereference) {\n }\n }\n \n- JSType type = getJSType(n);\n- if (dereference) {\n- ObjectType dereferenced = type.dereference();\n- if (dereferenced != null) {\n- type = dereferenced;\n- }\n- }\n- if (type.isFunctionPrototypeType() ||\n- (type.toObjectType() != null &&\n- type.toObjectType().getConstructor() != null)) {\n- return type.toString();\n- }\n String qualifiedName = n.getQualifiedName();\n if (qualifiedName != null) {\n return qualifiedName;\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.TypeCheckTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected:<...p never defined on C[2]> but was:<...p never defined on C[3.c2_]>", + "methodName": "testIssue1047" + } + ], + "metrics": { + "chunks": 3, + "classes": 1, + "files": 1, + "linesAdd": 12, + "linesMod": 0, + "linesRem": 12, + "methods": 1, + "sizeInLines": 24, + "spreadAllLines": 31, + "spreadCodeOnly": 20 + }, + "observations": "Move a block of code.", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "assignAdd", + "assignRem", + "condBranIfAdd", + "condBranRem", + "mcMove", + "retBranchAdd", + "retRem", + "varAdd", + "varRem" + ], + "repairPatterns": [ + "codeMove" + ], + "repairTools": [], + "revisionId": "871bca1f36c5c06aa880ce21429da63a76f8f6e9" + }, + { + "bugId": 112, + "changedFiles": { + "com/google/javascript/jscomp/TypeInference.java": { + "changes": [ + [ + 1192 + ], + [ + 1193 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/TypeInference.java\n+++ b/src/com/google/javascript/jscomp/TypeInference.java\n@@ -1189,9 +1189,15 @@ private boolean inferTemplatedTypesForCall(\n }\n \n // Try to infer the template types\n- Map inferred = \n- inferTemplateTypesFromParameters(fnType, n);\n-\n+ Map inferred = Maps.filterKeys(\n+ inferTemplateTypesFromParameters(fnType, n),\n+ new Predicate() {\n+\n+ @Override\n+ public boolean apply(TemplateType key) {\n+ return keys.contains(key);\n+ }}\n+ );\n \n // Replace all template types. If we couldn't find a replacement, we\n // replace it with UNKNOWN.\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.TypeCheckTest", + "error": "junit.framework.AssertionFailedError", + "message": "unexpected warnings(s):", + "methodName": "testIssue1058" + }, + { + "className": " com.google.javascript.jscomp.TypeCheckTest", + "error": "junit.framework.AssertionFailedError", + "message": "unexpected warnings(s):", + "methodName": "testTemplatized11" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 6, + "linesMod": 3, + "linesRem": 0, + "methods": 1, + "sizeInLines": 9, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Adds an inline interface implementation for a parameter of type Predicate on filterKeys method call.", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "assignExpChange", + "mcAdd", + "mdAdd", + "mdOverride", + "objInstAdd", + "tyImpInterf" + ], + "repairPatterns": [ + "wrapsMethod" + ], + "repairTools": [], + "revisionId": "b168c8822b2d3d12515ec6477812674c8805bcf3" + }, + { + "bugId": 114, + "changedFiles": { + "com/google/javascript/jscomp/NameAnalyzer.java": { + "changes": [ + [ + 578 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/NameAnalyzer.java\n+++ b/src/com/google/javascript/jscomp/NameAnalyzer.java\n@@ -575,7 +575,7 @@ private void recordAssignment(NodeTraversal t, Node n, Node recordNode) {\n } else {\n recordDepScope(nameNode, ns);\n }\n- } else {\n+ } else if (!(parent.isCall() && parent.getFirstChild() == n)) {\n // The rhs of the assignment is the caller, so it's used by the\n // context. Don't associate it w/ the lhs.\n // FYI: this fixes only the specific case where the assignment is the\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.NameAnalyzerTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testAssignWithCall" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condBranIfAdd", + "mcAdd" + ], + "repairPatterns": [ + "singleLine", + "wrapsIf" + ], + "repairTools": [ + "rtNopol" + ], + "revisionId": "5f03c6817341d39d8dead76c7511fd6bb0b9009f" + }, + { + "bugId": 113, + "changedFiles": { + "com/google/javascript/jscomp/ProcessClosurePrimitives.java": { + "changes": [ + [ + 329 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/ProcessClosurePrimitives.java\n+++ b/src/com/google/javascript/jscomp/ProcessClosurePrimitives.java\n@@ -326,7 +326,7 @@ private void processRequireCall(NodeTraversal t, Node n, Node parent) {\n // the checks for broken requires turned off. In these cases, we\n // allow broken requires to be preserved by the first run to\n // let them be caught in the subsequent run.\n- if (provided != null) {\n+ if (provided != null || requiresLevel.isOn()) {\n parent.detachFromParent();\n compiler.reportCodeChange();\n }\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.VarCheckTest", + "error": "junit.framework.AssertionFailedError", + "message": "There should be one error. required \"namespace.Class1\" namespace never provided", + "methodName": "testNoUndeclaredVarWhenUsingClosurePass" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Again, an existent condition with Null-Check was expanded with other condition.", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condExpExpand", + "mcAdd" + ], + "repairPatterns": [ + "expLogicExpand", + "singleLine" + ], + "repairTools": [ + "rtNopol" + ], + "revisionId": "0fb76a81bbdd8ab84a00b8be2099abfb83c88668" + }, + { + "bugId": 115, + "changedFiles": { + "com/google/javascript/jscomp/FunctionInjector.java": { + "deletes": [ + [ + 697 + ], + [ + 698 + ], + [ + 699 + ], + [ + 700 + ], + [ + 701 + ], + [ + 702 + ], + [ + 703 + ], + [ + 704 + ], + [ + 730 + ], + [ + 731 + ], + [ + 732 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/FunctionInjector.java\n+++ b/src/com/google/javascript/jscomp/FunctionInjector.java\n@@ -694,14 +694,6 @@ private CanInlineResult canInlineReferenceDirectly(\n \n Node block = fnNode.getLastChild();\n \n- boolean hasSideEffects = false;\n- if (block.hasChildren()) {\n- Preconditions.checkState(block.hasOneChild());\n- Node stmt = block.getFirstChild();\n- if (stmt.isReturn()) {\n- hasSideEffects = NodeUtil.mayHaveSideEffects(stmt.getFirstChild(), compiler);\n- }\n- }\n // CALL NODE: [ NAME, ARG1, ARG2, ... ]\n Node cArg = callNode.getFirstChild().getNext();\n \n@@ -727,9 +719,6 @@ private CanInlineResult canInlineReferenceDirectly(\n // For each named parameter check if a mutable argument use more than one.\n if (fnParam != null) {\n if (cArg != null) {\n- if (hasSideEffects && NodeUtil.canBeSideEffected(cArg)) {\n- return CanInlineResult.NO;\n- }\n // Check for arguments that are evaluated more than once.\n // Note: Unlike block inlining, there it is not possible that a\n // parameter reference will be in a loop.\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.InlineFunctionsTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testBug4944818" + }, + { + "className": " com.google.javascript.jscomp.InlineFunctionsTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testDoubleInlining1" + }, + { + "className": " com.google.javascript.jscomp.InlineFunctionsTest", + 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Preconditions.checkState(block.hasOneChild());\n+ Node stmt = block.getFirstChild();\n+ if (stmt.isReturn()) {\n+ hasSideEffects = NodeUtil.mayHaveSideEffects(\n+ stmt.getFirstChild(), compiler);\n+ }\n+ }\n \n // CALL NODE: [ NAME, ARG1, ARG2, ... ]\n Node cArg = callNode.getFirstChild().getNext();\n@@ -720,6 +729,9 @@ private CanInlineResult canInlineReferenceDirectly(\n // For each named parameter check if a mutable argument use more than one.\n if (fnParam != null) {\n if (cArg != null) {\n+ if (hasSideEffects && NodeUtil.canBeSideEffected(cArg)) {\n+ return CanInlineResult.NO;\n+ }\n \n // Check for arguments that are evaluated more than once.\n // Note: Unlike block inlining, there it is not possible that a\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.FunctionInjectorTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected: but was:", + "methodName": "testIssue1101a" + }, + { + "className": " 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"junit.framework.AssertionFailedError", + "message": "", + "methodName": "testInlineIfParametersModified9" + }, + { + "className": " com.google.javascript.jscomp.InlineFunctionsTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testInlineFunctions6" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 12, + "linesMod": 0, + "linesRem": 0, + "methods": 2, + "sizeInLines": 12, + "spreadAllLines": 26, + "spreadCodeOnly": 15 + }, + "observations": "Strange... what is removed in 115 is added again in 116.", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "assignAdd", + "condBranIfAdd", + "mcAdd", + "retBranchAdd", + "varAdd" + ], + "repairPatterns": [ + "condBlockOthersAdd", + "condBlockRetAdd", + "missComp" + ], + "repairTools": [ + "rtDynaMoth", + "rtNopol" + ], + "revisionId": "b80dfd3b0e5e4b490b7afb469320d18bac4520b4" + }, + { + "bugId": 111, + "changedFiles": { + "com/google/javascript/jscomp/type/ClosureReverseAbstractInterpreter.java": { + "changes": [ + [ + 54 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/type/ClosureReverseAbstractInterpreter.java\n+++ b/src/com/google/javascript/jscomp/type/ClosureReverseAbstractInterpreter.java\n@@ -51,7 +51,8 @@\n new RestrictByTrueTypeOfResultVisitor() {\n @Override\n protected JSType caseTopType(JSType topType) {\n- return topType;\n+ return topType.isAllType() ?\n+ getNativeType(ARRAY_TYPE) : topType;\n }\n \n @Override\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.ClosureReverseAbstractInterpreterTest", + "error": "junit.framework.AssertionFailedError", + "message": "Expected: Array", + "methodName": "testGoogIsArray2" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 1, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 2, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condBranIfElseAdd", + "mcAdd", + "retExpChange" + ], + "repairPatterns": [ + "singleLine", + "wrapsIfElse" + ], + "repairTools": [ + "rtNopol" + ], + "revisionId": "6f981f77e5bd9e2eecbd851a2a02933cdb9af0d8" + }, + { + "bugId": 110, + "changedFiles": { + "com/google/javascript/jscomp/ScopedAliases.java": { + "changes": [ + [ + 366 + ], + [ + 368 + ], + [ + 369 + ], + [ + 371 + ] + ], + "inserts": [ + [ + 357, + 358 + ], + [ + 380, + 381, + 382, + 383, + 384, + 385, + 386, + 387, + 388, + 389, + 390, + 391, + 392, + 393, + 394, + 395, + 396, + 397, + 398 + ], + [ + 407, + 408 + ], + [ + 409 + ] + ] + }, + "com/google/javascript/rhino/Node.java": { + "inserts": [ + [ + 554, + 555 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/ScopedAliases.java\n+++ b/src/com/google/javascript/jscomp/ScopedAliases.java\n@@ -355,6 +355,7 @@ private void findAliases(NodeTraversal t) {\n Node n = v.getNode();\n Node parent = n.getParent();\n boolean isVar = parent.isVar();\n+ boolean isFunctionDecl = NodeUtil.isFunctionDeclaration(parent);\n if (isVar && n.getFirstChild() != null && n.getFirstChild().isQualifiedName()) {\n recordAlias(v);\n } else if (v.isBleedingFunction()) {\n@@ -363,12 +364,13 @@ private void findAliases(NodeTraversal t) {\n } else if (parent.getType() == Token.LP) {\n // Parameters of the scope function also get a BAD_PARAMETERS\n // error.\n- } else if (isVar) {\n+ } else if (isVar || isFunctionDecl) {\n+ boolean isHoisted = NodeUtil.isHoistedFunctionDeclaration(parent);\n Node grandparent = parent.getParent();\n- Node value = n.hasChildren() ?\n- v.getInitialValue().detachFromParent() :\n+ Node value = v.getInitialValue() != null ?\n+ v.getInitialValue() :\n null;\n- Node varNode = parent;\n+ Node varNode = null;\n \n String name = n.getString();\n int nameCount = scopedAliasNames.count(name);\n@@ -380,7 +382,9 @@ private void findAliases(NodeTraversal t) {\n \n // First, we need to free up the function expression (EXPR)\n // to be used in another expression.\n+ if (isFunctionDecl) {\n // Replace \"function NAME() { ... }\" with \"var NAME;\".\n+ Node existingName = v.getNameNode();\n \n // We can't keep the local name on the function expression,\n // because IE is buggy and will leak the name into the global\n@@ -389,9 +393,19 @@ private void findAliases(NodeTraversal t) {\n //\n // This will only cause problems if this is a hoisted, recursive\n // function, and the programmer is using the hoisting.\n+ Node newName = IR.name(\"\").useSourceInfoFrom(existingName);\n+ value.replaceChild(existingName, newName);\n \n+ varNode = IR.var(existingName).useSourceInfoFrom(existingName);\n+ grandparent.replaceChild(parent, varNode);\n+ } else {\n+ if (value != null) {\n // If this is a VAR, we can just detach the expression and\n // the tree will still be valid.\n+ value.detachFromParent();\n+ }\n+ varNode = parent;\n+ }\n \n // Add $jscomp.scope.name = EXPR;\n // Make sure we copy over all the jsdoc and debug info.\n@@ -405,7 +419,11 @@ private void findAliases(NodeTraversal t) {\n NodeUtil.setDebugInformation(\n newDecl.getFirstChild().getFirstChild(), n, name);\n \n+ if (isHoisted) {\n+ grandparent.addChildToFront(newDecl);\n+ } else {\n grandparent.addChildBefore(newDecl, varNode);\n+ }\n }\n \n // Rewrite \"var name = EXPR;\" to \"var name = $jscomp.scope.name;\"\n--- a/src/com/google/javascript/rhino/Node.java\n+++ b/src/com/google/javascript/rhino/Node.java\n@@ -551,6 +551,9 @@ public Node getChildBefore(Node child) {\n return null;\n }\n Node n = first;\n+ if (n == null) {\n+ throw new RuntimeException(\"node is not a child\");\n+ }\n \n while (n.next != child) {\n n = n.next;\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.ScopedAliasesTest", + "error": "junit.framework.AssertionFailedError", + "message": "Unexpected error(s): JSC_GOOG_SCOPE_NON_ALIAS_LOCAL. The local variable f is in a goog.scope and is not an alias. at testcode line 1 : 39 expected:<0> but was:<1>", + "methodName": "testHoistedFunctionDeclaration" + }, + { + "className": " com.google.javascript.jscomp.ScopedAliasesTest", + "error": "junit.framework.AssertionFailedError", + "message": "Unexpected error(s): JSC_GOOG_SCOPE_NON_ALIAS_LOCAL. The local variable f is in a goog.scope and is not an alias. at testcode line 1 : 41 expected:<0> but was:<1>", + "methodName": "testFunctionDeclaration" + } + ], + "metrics": { + "chunks": 12, + "classes": 2, + "files": 2, + "linesAdd": 21, + "linesMod": 4, + "linesRem": 0, + "methods": 2, + "sizeInLines": 25, + "spreadAllLines": 47, + "spreadCodeOnly": 22 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "assignAdd", + "assignExpChange", + "condBranIfAdd", + "condBranIfElseAdd", + "condExpExpand", + "condExpMod", + "exThrowsAdd", + "mcAdd", + "mcRem", + "objInstAdd", + "retExpChange", + "varAdd" + ], + "repairPatterns": [ + "condBlockExcAdd", + "condBlockOthersAdd", + "expLogicExpand", + "expLogicMod", + "initFix", + "missNullCheckN", + "missNullCheckP", + "wrapsIfElse" + ], + "repairTools": [], + "revisionId": "13fb7fcbcad87f8df63535491627bf7b01471064" + }, + { + "bugId": 118, + "changedFiles": { + "com/google/javascript/jscomp/DisambiguateProperties.java": { + "inserts": [ + [ + 494, + 495, + 496, + 497 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/DisambiguateProperties.java\n+++ b/src/com/google/javascript/jscomp/DisambiguateProperties.java\n@@ -492,6 +492,9 @@ private void handleObjectLit(NodeTraversal t, Node n) {\n child != null;\n child = child.getNext()) {\n // Maybe STRING, GET, SET\n+ if (child.isQuotedString()) {\n+ continue;\n+ }\n \n // We should never see a mix of numbers and strings.\n String name = child.getString();\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.DisambiguatePropertiesTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected:<{[]}> but was:<{[a=[[Foo.prototype]]]}>", + "methodName": "testOneType4" + }, + { + "className": " com.google.javascript.jscomp.DisambiguatePropertiesTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testTwoTypes4" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 3, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 3, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condBranIfAdd", + "mcAdd" + ], + "repairPatterns": [ + "condBlockOthersAdd" + ], + "repairTools": [], + "revisionId": "f17961ae4d3d7cf5ea291d82804239982d009ef7" + }, + { + "bugId": 120, + "changedFiles": { + "com/google/javascript/jscomp/ReferenceCollectingCallback.java": { + "inserts": [ + [ + 431 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/ReferenceCollectingCallback.java\n+++ b/src/com/google/javascript/jscomp/ReferenceCollectingCallback.java\n@@ -428,6 +428,9 @@ boolean isAssignedOnceInLifetime() {\n for (BasicBlock block = ref.getBasicBlock();\n block != null; block = block.getParent()) {\n if (block.isFunction) {\n+ if (ref.getSymbol().getScope() != ref.scope) {\n+ return false;\n+ }\n break;\n } else if (block.isLoop) {\n return false;\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.InlineVariablesTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testExternalIssue1053" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 3, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 3, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condBranIfAdd", + "mcAdd", + "retBranchAdd" + ], + "repairPatterns": [ + "condBlockRetAdd" + ], + "repairTools": [ + "rtNopol" + ], + "revisionId": "0123fd5303c85d0d26add64aa2e19fee33f73aaa" + }, + { + "bugId": 119, + "changedFiles": { + "com/google/javascript/jscomp/GlobalNamespace.java": { + "inserts": [ + [ + 366, + 367, + 368 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/GlobalNamespace.java\n+++ b/src/com/google/javascript/jscomp/GlobalNamespace.java\n@@ -363,6 +363,7 @@ public void collect(JSModule module, Scope scope, Node n) {\n isSet = true;\n type = Name.Type.FUNCTION;\n break;\n+ case Token.CATCH:\n case Token.INC:\n case Token.DEC:\n isSet = true;\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.CheckGlobalNamesTest", + "error": "junit.framework.AssertionFailedError", + "message": "Unexpected warning(s): JSC_UNDEFINED_NAME. e is never defined at testcode line 1 : 48", + "methodName": "testGlobalCatch" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 1, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "\"Case\" Added to switch... Should be considered a \"missing block\" too?", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condBranCaseAdd" + ], + "repairPatterns": [ + "expLogicExpand", + "singleLine" + ], + "repairTools": [ + "rtNopol" + ], + "revisionId": "046e0b226e963bc584c2a6cd3c2b471777c5cc53" + }, + { + "bugId": 121, + "changedFiles": { + "com/google/javascript/jscomp/InlineVariables.java": { + "changes": [ + [ + 304 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/InlineVariables.java\n+++ b/src/com/google/javascript/jscomp/InlineVariables.java\n@@ -301,10 +301,12 @@ private void inlineNonConstants(\n if (!maybeModifiedArguments &&\n !staleVars.contains(v) &&\n referenceInfo.isWellDefined() &&\n- referenceInfo.isAssignedOnceInLifetime()) {\n+ referenceInfo.isAssignedOnceInLifetime() &&\n // Inlining the variable based solely on well-defined and assigned\n // once is *NOT* correct. We relax the correctness requirement if\n // the variable is declared constant.\n+ (isInlineableDeclaredConstant(v, referenceInfo) ||\n+ referenceInfo.isOnlyAssignmentSameScopeAsDeclaration())) {\n List refs = referenceInfo.references;\n for (int i = 1 /* start from a read */; i < refs.size(); i++) {\n Node nameNode = refs.get(i).getNode();\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.InlineVariablesTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testExternalIssue1053" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 2, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 3, + "spreadAllLines": 3, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condExpExpand", + "mcAdd" + ], + "repairPatterns": [ + "expLogicExpand", + "singleLine" + ], + "repairTools": [ + "rtNopol" + ], + "revisionId": "2aee36e667526ff8b0b5e6dad66506acee920ea6" + }, + { + "bugId": 123, + "changedFiles": { + "com/google/javascript/jscomp/CodeGenerator.java": { + "changes": [ + [ + 285 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/CodeGenerator.java\n+++ b/src/com/google/javascript/jscomp/CodeGenerator.java\n@@ -282,7 +282,7 @@ void add(Node n, Context context) {\n case Token.HOOK: {\n Preconditions.checkState(childCount == 3);\n int p = NodeUtil.precedence(type);\n- Context rhsContext = Context.OTHER;\n+ Context rhsContext = getContextForNoInOperator(context);\n addExpr(first, p + 1, context);\n cc.addOp(\"?\", true);\n addExpr(first.getNext(), 1, rhsContext);\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.CodePrinterTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected: but was:", + "methodName": "testPrintInOperatorInForLoop" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Changes value in assignment from constant to method call.", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "assignExpChange", + "mcAdd", + "varReplMc" + ], + "repairPatterns": [ + "initFix", + "singleLine", + "wrongComp", + "wrongVarRef" + ], + "repairTools": [], + "revisionId": "8d11b8cc7a6183222b61c9bd398fed5448c59109" + }, + { + "bugId": 122, + "changedFiles": { + "com/google/javascript/jscomp/parsing/IRFactory.java": { + "changes": [ + [ + 252 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/parsing/IRFactory.java\n+++ b/src/com/google/javascript/jscomp/parsing/IRFactory.java\n@@ -249,7 +249,8 @@ private Node transformBlock(AstNode node) {\n * Check to see if the given block comment looks like it should be JSDoc.\n */\n private void handleBlockComment(Comment comment) {\n- if (comment.getValue().indexOf(\"/* @\") != -1 || comment.getValue().indexOf(\"\\n * @\") != -1) {\n+ Pattern p = Pattern.compile(\"(/|(\\n[ \\t]*))\\\\*[ \\t]*@[a-zA-Z]\");\n+ if (p.matcher(comment.getValue()).find()) {\n errorReporter.warning(\n SUSPICIOUS_COMMENT_WARNING,\n sourceName,\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.parsing.ParserTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testSuspiciousBlockCommentWarning3" + }, + { + "className": " com.google.javascript.jscomp.parsing.ParserTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testSuspiciousBlockCommentWarning4" + }, + { + "className": " com.google.javascript.jscomp.parsing.ParserTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testSuspiciousBlockCommentWarning5" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 1, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 2, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "assignAdd", + "condExpMod", + "mcAdd", + "mcRem", + "varAdd" + ], + "repairPatterns": [ + "expLogicMod", + "wrongComp" + ], + "repairTools": [], + "revisionId": "a8a456b183c9600658bcb0c72091bae1a30a4fda" + }, + { + "bugId": 126, + "changedFiles": { + "com/google/javascript/jscomp/MinimizeExitPoints.java": { + "deletes": [ + [ + 141 + ], + [ + 142 + ], + [ + 143 + ], + [ + 144 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/MinimizeExitPoints.java\n+++ b/src/com/google/javascript/jscomp/MinimizeExitPoints.java\n@@ -138,10 +138,6 @@ void tryMinimizeExits(Node n, int exitType, String labelName) {\n * can cause problems if it changes the completion type of the finally\n * block. See ECMA 262 Sections 8.9 & 12.14\n */\n- if (NodeUtil.hasFinally(n)) {\n- Node finallyBlock = n.getLastChild();\n- tryMinimizeExits(finallyBlock, exitType, labelName);\n- }\n }\n \n // Just a 'label'.\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.MinimizeExitPointsTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testDontRemoveBreakInTryFinally" + }, + { + "className": " com.google.javascript.jscomp.MinimizeExitPointsTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testFunctionReturnOptimization" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 0, + "linesRem": 4, + "methods": 1, + "sizeInLines": 4, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "assignRem", + "condBranRem", + "mcRem", + "varRem" + ], + "repairPatterns": [ + "condBlockRem" + ], + "repairTools": [ + "rtDynaMoth", + "rtHDRepair", + "rtJAID", + "rtNopol", + "rtssFix" + ], + "revisionId": "bd2803b6d9ab600906b262ae51cb3591160b5f3c" + }, + { + "bugId": 124, + "changedFiles": { + "com/google/javascript/jscomp/ExploitAssigns.java": { + "inserts": [ + [ + 212, + 213 + ], + [ + 214 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/ExploitAssigns.java\n+++ b/src/com/google/javascript/jscomp/ExploitAssigns.java\n@@ -210,7 +210,9 @@ private boolean isSafeReplacement(Node node, Node replacement) {\n }\n Preconditions.checkArgument(node.isGetProp());\n \n+ while (node.isGetProp()) {\n node = node.getFirstChild();\n+ }\n if (node.isName()\n && isNameAssignedTo(node.getString(), replacement)) {\n return false;\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.ExploitAssignsTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testIssue1017" + } + ], + "metrics": { + 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nextCfgNode = outEdges.get(0).getDestination().getValue();\n- if (nextCfgNode == fallThrough) {\n+ if (nextCfgNode == fallThrough && !inFinally(n.getParent(), n)) {\n removeNode(n);\n }\n }\n }\n }\n \n+ private boolean inFinally(Node parent, Node child) {\n+ if (parent == null || parent.isFunction()) {\n+ return false;\n+ } else if (NodeUtil.isTryFinallyNode(parent, child)) {\n+ return true;\n+ } else {\n+ return inFinally(parent.getParent(), parent);\n+ }\n+ }\n \n private Node computeFollowing(Node n) {\n Node next = ControlFlowAnalysis.computeFollowNode(n);\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.UnreachableCodeEliminationTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testIssue4177428_return" + }, + { + "className": " com.google.javascript.jscomp.UnreachableCodeEliminationTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testDontRemoveBreakInTryFinally" + }, + { 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"observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condBranIfElseAdd", + "condExpExpand", + "mcAdd", + "mdAdd", + "retBranchAdd" + ], + "repairPatterns": [ + "condBlockRetAdd", + "expLogicExpand", + "missComp", + "missNullCheckP" + ], + "repairTools": [ + "rtDynaMoth", + "rtNopol" + ], + "revisionId": "211dc0161ae737f59cac22f30b048d56a059d14b" + }, + { + "bugId": 125, + "changedFiles": { + "com/google/javascript/jscomp/TypeCheck.java": { + "changes": [ + [ + 1661 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/TypeCheck.java\n+++ b/src/com/google/javascript/jscomp/TypeCheck.java\n@@ -1658,7 +1658,7 @@ private void visitNew(NodeTraversal t, Node n) {\n JSType type = getJSType(constructor).restrictByNotNullOrUndefined();\n if (type.isConstructor() || type.isEmptyType() || type.isUnknownType()) {\n FunctionType fnType = type.toMaybeFunctionType();\n- if (fnType != null) {\n+ if (fnType != null && fnType.hasInstanceType()) {\n visitParameterList(t, n, fnType);\n ensureTyped(t, n, fnType.getInstanceType());\n } else {\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.TypeCheckTest", + "error": "java.lang.IllegalStateException", + "message": "", + "methodName": "testIssue1002" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Again, conditional expression with Null-Check was expanded with new condition.", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condExpExpand", + "mcAdd" + ], + "repairPatterns": [ + "expLogicExpand", + "singleLine" + ], + "repairTools": [ + "rtJAID" + ], + "revisionId": "8cef00180a5cf67d047919c89668a6405030dbab" + }, + { + "bugId": 128, + "changedFiles": { + "com/google/javascript/jscomp/CodeGenerator.java": { + "changes": [ + [ + 791 + ] + ], + "inserts": [ + [ + 785 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/CodeGenerator.java\n+++ b/src/com/google/javascript/jscomp/CodeGenerator.java\n@@ -782,13 +782,16 @@ private void unrollBinaryOperator(\n \n static boolean isSimpleNumber(String s) {\n int len = s.length();\n+ if (len == 0) {\n+ return false;\n+ }\n for (int index = 0; index < len; index++) {\n char c = s.charAt(index);\n if (c < '0' || c > '9') {\n return false;\n }\n }\n- return len > 0 && s.charAt(0) != '0';\n+ return len == 1 || s.charAt(0) != '0';\n }\n \n static double getSimpleNumber(String s) {\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.CodePrinterTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected: but was:", + "methodName": "testIssue942" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 3, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 4, + "spreadAllLines": 6, + "spreadCodeOnly": 6 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condBranIfAdd", + "retBranchAdd", + "retExpChange" + ], + "repairPatterns": [ + "condBlockRetAdd", + "expLogicMod" + ], + "repairTools": [], + "revisionId": "d82fb38b0121bf690cea58df293185c7e91ded9c" + }, + { + "bugId": 3, + "changedFiles": { + "org/apache/commons/lang3/math/NumberUtils.java": { + "inserts": [ + [ + 593 + ], + [ + 597 + ], + [ + 601 + ], + [ + 605 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/lang3/math/NumberUtils.java\n+++ b/src/main/java/org/apache/commons/lang3/math/NumberUtils.java\n@@ -590,18 +590,22 @@ public static Number createNumber(final String str) throws NumberFormatException\n //Must be a Float, Double, BigDecimal\n final boolean allZeros = isAllZeros(mant) && isAllZeros(exp);\n try {\n+ if(numDecimals <= 7){// If number has 7 or fewer digits past the decimal point then make it a float\n final Float f = createFloat(str);\n if (!(f.isInfinite() || (f.floatValue() == 0.0F && !allZeros))) {\n return f;\n }\n+ }\n } catch (final NumberFormatException nfe) { // NOPMD\n // ignore the bad number\n }\n try {\n+ if(numDecimals <= 16){// If number has between 8 and 16 digits past the decimal point then make it a double\n final Double d = createDouble(str);\n if (!(d.isInfinite() || (d.doubleValue() == 0.0D && !allZeros))) {\n return d;\n }\n+ }\n } catch (final NumberFormatException nfe) { // NOPMD\n // ignore the bad number\n }\n", + "failingTests": [ + { + "className": " org.apache.commons.lang3.math.NumberUtilsTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testStringCreateNumberEnsureNoPrecisionLoss" + } + ], + "metrics": { + "chunks": 4, + "classes": 1, + "files": 1, + "linesAdd": 4, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 4, + "spreadAllLines": 12, + "spreadCodeOnly": 11 + }, + "observations": "", + "program": 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"junit.framework.AssertionFailedError", + "message": "Failed 2 test(s)", + "methodName": "testParseAllLocales" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 3, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 3, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "condBranIfAdd", + "exThrowsAdd", + "mcAdd", + "objInstAdd" + ], + "repairPatterns": [ + "condBlockExcAdd" + ], + "repairTools": [], + "revisionId": "09d39029b16dee61022dc8afde4d84f523f37813" + }, + { + "bugId": 5, + "changedFiles": { + "org/apache/commons/lang3/LocaleUtils.java": { + "inserts": [ + [ + 97 + ], + [ + 128 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/lang3/LocaleUtils.java\n+++ b/src/main/java/org/apache/commons/lang3/LocaleUtils.java\n@@ -94,6 +94,26 @@ public static Locale toLocale(final String str) {\n throw new IllegalArgumentException(\"Invalid locale format: \" + str);\n }\n final char ch0 = str.charAt(0);\n+ if (ch0 == '_') {\n+ if (len < 3) {\n+ throw new IllegalArgumentException(\"Invalid locale format: \" + str);\n+ }\n+ final char ch1 = str.charAt(1);\n+ final char ch2 = str.charAt(2);\n+ if (!Character.isUpperCase(ch1) || !Character.isUpperCase(ch2)) {\n+ throw new IllegalArgumentException(\"Invalid locale format: \" + str);\n+ }\n+ if (len == 3) {\n+ return new Locale(\"\", str.substring(1, 3));\n+ }\n+ if (len < 5) {\n+ throw new IllegalArgumentException(\"Invalid locale format: \" + str);\n+ }\n+ if (str.charAt(3) != '_') {\n+ throw new IllegalArgumentException(\"Invalid locale format: \" + str);\n+ }\n+ return new Locale(\"\", str.substring(1, 3), str.substring(4));\n+ } else {\n final char ch1 = str.charAt(1);\n if (!Character.isLowerCase(ch0) || !Character.isLowerCase(ch1)) {\n throw new IllegalArgumentException(\"Invalid locale format: \" + str);\n@@ -125,6 +145,7 @@ public static Locale toLocale(final String str) {\n throw new IllegalArgumentException(\"Invalid locale format: \" + str);\n }\n return new Locale(str.substring(0, 2), str.substring(3, 5), str.substring(6));\n+ }\n }\n \n //-----------------------------------------------------------------------\n", + "failingTests": [ + { + "className": " org.apache.commons.lang3.LocaleUtilsTest", + "error": "java.lang.IllegalArgumentException", + "message": "Invalid locale format: _GB", + "methodName": "testLang865" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 21, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 21, + "spreadAllLines": 31, + "spreadCodeOnly": 31 + }, + "observations": "", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "assignAdd", + "condBranIfElseAdd", + "exThrowsAdd", + "mcAdd", + "objInstAdd", + "retBranchAdd" + ], + "repairPatterns": [ + "condBlockExcAdd", + "condBlockRetAdd", + "wrapsIfElse" + ], + "repairTools": [], + "revisionId": "75944e541d358d5b06ebbba3098a919fbf2539d4" + }, + { + "bugId": 130, + "changedFiles": { + "com/google/javascript/jscomp/CollapseProperties.java": { + "changes": [ + [ + 172 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/CollapseProperties.java\n+++ b/src/com/google/javascript/jscomp/CollapseProperties.java\n@@ -169,7 +169,7 @@ private void inlineAliases(GlobalNamespace namespace) {\n continue;\n }\n \n- if (name.globalSets == 1 && name.localSets == 0 &&\n+ if (!name.inExterns && name.globalSets == 1 && name.localSets == 0 &&\n name.aliasingGets > 0) {\n // {@code name} meets condition (b). Find all of its local aliases\n // and try to inline them.\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.CollapsePropertiesTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testIssue931" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condExpExpand" + ], + "repairPatterns": [ + "expLogicExpand", + "singleLine" + ], + "repairTools": [ + "rtDynaMoth", + "rtNopol" + ], + "revisionId": "9fac3ccd2fa9e6137584f079db1a6f5962a65cf4" + }, + { + "bugId": 4, + "changedFiles": { + "org/apache/commons/lang3/text/translate/LookupTranslator.java": { + "changes": [ + [ + 31 + ], + [ + 46 + ], + [ + 51 + ], + [ + 77 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/lang3/text/translate/LookupTranslator.java\n+++ b/src/main/java/org/apache/commons/lang3/text/translate/LookupTranslator.java\n@@ -28,7 +28,7 @@\n */\n public class LookupTranslator extends CharSequenceTranslator {\n \n- private final HashMap lookupMap;\n+ private final HashMap lookupMap;\n private final int shortest;\n private final int longest;\n \n@@ -43,12 +43,12 @@\n * @param lookup CharSequence[][] table of size [*][2]\n */\n public LookupTranslator(final CharSequence[]... lookup) {\n- lookupMap = new HashMap();\n+ lookupMap = new HashMap();\n int _shortest = Integer.MAX_VALUE;\n int _longest = 0;\n if (lookup != null) {\n for (final CharSequence[] seq : lookup) {\n- this.lookupMap.put(seq[0], seq[1]);\n+ this.lookupMap.put(seq[0].toString(), seq[1]);\n final int sz = seq[0].length();\n if (sz < _shortest) {\n _shortest = sz;\n@@ -74,7 +74,7 @@ public int translate(final CharSequence input, final int index, final Writer out\n // descend so as to get a greedy algorithm\n for (int i = max; i >= shortest; i--) {\n final CharSequence subSeq = input.subSequence(index, index + i);\n- final CharSequence result = lookupMap.get(subSeq);\n+ final CharSequence result = lookupMap.get(subSeq.toString());\n if (result != null) {\n out.write(result.toString());\n return i;\n", + "failingTests": [ + { + "className": " org.apache.commons.lang3.text.translate.LookupTranslatorTest", + "error": "junit.framework.AssertionFailedError", + "message": "Incorrect codepoint consumption expected:<3> but was:<0>", + "methodName": "testLang882" + } + ], + "metrics": { + "chunks": 4, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 4, + "linesRem": 0, + "methods": 1, + "sizeInLines": 4, + "spreadAllLines": 43, + "spreadCodeOnly": 27 + }, + "observations": "Type change with adjust in related calls/operations.", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "assignExpChange", + "mcAdd", + "objInstMod", + "varReplMc", + "varTyChange" + ], + "repairPatterns": [ + "initFix", + "wrongVarRef" + ], + "repairTools": [], + "revisionId": "fb47b96ab635d7cc6e9edefdddc46f1baf63b117" + }, + { + "bugId": 129, + "changedFiles": { + "com/google/javascript/jscomp/PrepareAst.java": { + "inserts": [ + [ + 164, + 165, + 166, + 167 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/PrepareAst.java\n+++ b/src/com/google/javascript/jscomp/PrepareAst.java\n@@ -163,6 +163,9 @@ private void annotateCalls(Node n) {\n Node first = n.getFirstChild();\n \n // ignore cast nodes.\n+ while (first.isCast()) {\n+ first = first.getFirstChild();\n+ }\n \n if (!NodeUtil.isGet(first)) {\n n.putBooleanProp(Node.FREE_CALL, true);\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.IntegrationTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testIssue937" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 3, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 3, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Adds a loop to iterate over child of nodes.", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "assignAdd", + "loopAdd", + "mcAdd" + ], + "repairPatterns": [ + "missComp", + "notClassified" + ], + "repairTools": [ + "rtDynaMoth", + "rtNopol" + ], + "revisionId": "79a8906570f44e5f519282bd32595985ed089aed" + }, + { + "bugId": 1, + "changedFiles": { + "org/apache/commons/lang3/math/NumberUtils.java": { + "changes": [ + [ + 468 + ], + [ + 471 + ] + ], + "inserts": [ + [ + 467 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/lang3/math/NumberUtils.java\n+++ b/src/main/java/org/apache/commons/lang3/math/NumberUtils.java\n@@ -464,11 +464,20 @@ public static Number createNumber(final String str) throws NumberFormatException\n }\n }\n if (pfxLen > 0) { // we have a hex number\n+ char firstSigDigit = 0; // strip leading zeroes\n+ for(int i = pfxLen; i < str.length(); i++) {\n+ firstSigDigit = str.charAt(i);\n+ if (firstSigDigit == '0') { // count leading zeroes\n+ pfxLen++;\n+ } else {\n+ break;\n+ }\n+ }\n final int hexDigits = str.length() - pfxLen;\n- if (hexDigits > 16) { // too many for Long\n+ if (hexDigits > 16 || (hexDigits == 16 && firstSigDigit > '7')) { // too many for Long\n return createBigInteger(str);\n }\n- if (hexDigits > 8) { // too many for an int\n+ if (hexDigits > 8 || (hexDigits == 8 && firstSigDigit > '7')) { // too many for an int\n return createLong(str);\n }\n return createInteger(str);\n", + "failingTests": [ + { + "className": " org.apache.commons.lang3.math.NumberUtilsTest", + "error": "java.lang.NumberFormatException", + "message": "For input string: \"80000000\"", + "methodName": "TestLang747" + } + ], + "metrics": { + "chunks": 3, + "classes": 1, + "files": 1, + "linesAdd": 9, + "linesMod": 2, + "linesRem": 0, + "methods": 1, + "sizeInLines": 11, + "spreadAllLines": 3, + "spreadCodeOnly": 3 + }, + "observations": "", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "assignAdd", + "condBranIfElseAdd", + "condExpExpand", + "loopAdd", + "mcAdd", + "varAdd" + ], + "repairPatterns": [ + "condBlockOthersAdd", + "copyPaste", + "expLogicExpand", + "missComp" + ], + "repairTools": [], + "revisionId": "687b2e62b7c6e81cd9d5c872b7fa9cc8fd3f1509" + }, + { + "bugId": 132, + "changedFiles": { + "com/google/javascript/jscomp/PeepholeSubstituteAlternateSyntax.java": { + "changes": [ + [ + 782 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/PeepholeSubstituteAlternateSyntax.java\n+++ b/src/com/google/javascript/jscomp/PeepholeSubstituteAlternateSyntax.java\n@@ -779,7 +779,9 @@ private Node tryMinimizeIf(Node n) {\n // evaluates LHS before cond]\n // NOTE - there are some circumstances where we can\n // proceed even if there are side effects...\n- !mayEffectMutableState(lhs)) {\n+ !mayEffectMutableState(lhs) &&\n+ (!mayHaveSideEffects(cond) ||\n+ (thenOp.isAssign() && thenOp.getFirstChild().isName()))) {\n \n n.removeChild(cond);\n Node assignName = thenOp.removeFirstChild();\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.PeepholeSubstituteAlternateSyntaxTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testIssue925" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 2, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 3, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condExpExpand", + "mcAdd" + ], + "repairPatterns": [ + "expLogicExpand", + "singleLine" + ], + "repairTools": [ + "rtDynaMoth", + "rtNopol" + ], + "revisionId": "5b9485903b5e7d926f49dc91b915a256df92591c" + }, + { + "bugId": 6, + "changedFiles": { + "org/apache/commons/lang3/text/translate/CharSequenceTranslator.java": { + "changes": [ + [ + 95 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/lang3/text/translate/CharSequenceTranslator.java\n+++ b/src/main/java/org/apache/commons/lang3/text/translate/CharSequenceTranslator.java\n@@ -92,7 +92,7 @@ public final void translate(CharSequence input, Writer out) throws IOException {\n // // contract with translators is that they have to understand codepoints \n // // and they just took care of a surrogate pair\n for (int pt = 0; pt < consumed; pt++) {\n- pos += Character.charCount(Character.codePointAt(input, pos));\n+ pos += Character.charCount(Character.codePointAt(input, pt));\n }\n }\n }\n", + "failingTests": [ + { + "className": " org.apache.commons.lang3.StringUtilsTest", + "error": "java.lang.StringIndexOutOfBoundsException", + "message": "String index out of range: 2", + "methodName": "testEscapeSurrogatePairs" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "mcParValChange", + "varReplVar" + ], + "repairPatterns": [ + "expArithMod", + "singleLine", + "wrongVarRef" + ], + "repairTools": [ + "rtElixir", + "rtHDRepair", + "rtssFix" + ], + "revisionId": "cff0f1ae37bb2b7ab2dcdb10dec1f3cad7532e1c" + }, + { + "bugId": 133, + "changedFiles": { + "com/google/javascript/jscomp/parsing/JsDocInfoParser.java": { + "inserts": [ + [ + 2400, + 2401 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/jscomp/parsing/JsDocInfoParser.java\n+++ b/src/com/google/javascript/jscomp/parsing/JsDocInfoParser.java\n@@ -2398,6 +2398,7 @@ private void skipEOLs() {\n */\n private String getRemainingJSDocLine() {\n String result = stream.getRemainingJSDocLine();\n+ unreadToken = NO_UNREAD_TOKEN;\n return result;\n }\n \n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.parsing.JsDocInfoParserTest", + "error": "java.lang.IllegalStateException", + "message": "Recorded bad position information", + "methodName": "testTextExtents" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 1, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "It seems that the variable is reseted by method.", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "assignAdd" + ], + "repairPatterns": [ + "missComp", + "singleLine" + ], + "repairTools": [ + "rtCardumen", + "rtDynaMoth", + "rtNopol" + ], + "revisionId": "4fbbc47cb18f241b23dd2d4bf9c15d45b2473523" + }, + { + "bugId": 7, + "changedFiles": { + "org/apache/commons/lang3/math/NumberUtils.java": { + "deletes": [ + [ + 452 + ], + [ + 453 + ], + [ + 454 + ] + ], + "inserts": [ + [ + 721, + 722, + 723, + 724, + 725 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/lang3/math/NumberUtils.java\n+++ b/src/main/java/org/apache/commons/lang3/math/NumberUtils.java\n@@ -449,9 +449,6 @@ public static Number createNumber(String str) throws NumberFormatException {\n if (StringUtils.isBlank(str)) {\n throw new NumberFormatException(\"A blank string is not a valid number\");\n } \n- if (str.startsWith(\"--\")) {\n- return null;\n- }\n if (str.startsWith(\"0x\") || str.startsWith(\"-0x\") || str.startsWith(\"0X\") || str.startsWith(\"-0X\")) {\n int hexDigits = str.length() - 2; // drop 0x\n if (str.startsWith(\"-\")) { // drop -\n@@ -718,10 +715,13 @@ public static BigDecimal createBigDecimal(String str) {\n if (StringUtils.isBlank(str)) {\n throw new NumberFormatException(\"A blank string is not a valid number\");\n }\n+ if (str.trim().startsWith(\"--\")) {\n // this is protection for poorness in java.lang.BigDecimal.\n // it accepts this as a legal value, but it does not appear \n // to be in specification of class. OS X Java parses it to \n // a wrong value.\n+ throw new NumberFormatException(str + \" is not a valid number.\");\n+ }\n return new BigDecimal(str);\n }\n \n", + "failingTests": [ + { + "className": " org.apache.commons.lang3.math.NumberUtilsTest", + "error": "junit.framework.AssertionFailedError", + "message": "Expected NumberFormatException", + "methodName": "testCreateNumber" + } + ], + "metrics": { + "chunks": 3, + "classes": 1, + "files": 1, + "linesAdd": 3, + "linesMod": 0, + "linesRem": 3, + "methods": 2, + "sizeInLines": 6, + "spreadAllLines": 270, + "spreadCodeOnly": 167 + }, + "observations": "In one of the chunks, removes a conditional block with return.", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "condExpMod", + "exThrowsAdd", + "mcAdd", + "mcRem", + "objInstAdd", + "retRem" + ], + "repairPatterns": [ + "blockRemove", + "condBlockExcAdd", + "condBlockRem" + ], + "repairTools": [ + "rtAcs", + "rtCardumen", + "rtDeepRepair", + "rtGPFL" + ], + "revisionId": "e71f6dd3f2f70c640ae73d28b432b3a69ffcab4b" + }, + { + "bugId": 131, + "changedFiles": { + "com/google/javascript/rhino/TokenStream.java": { + "changes": [ + [ + 193 + ], + [ + 194 + ], + [ + 199 + ] + ] + } + }, + "diff": "--- a/src/com/google/javascript/rhino/TokenStream.java\n+++ b/src/com/google/javascript/rhino/TokenStream.java\n@@ -191,12 +191,13 @@ public static boolean isJSIdentifier(String s) {\n int length = s.length();\n \n if (length == 0 ||\n+ Character.isIdentifierIgnorable(s.charAt(0)) ||\n !Character.isJavaIdentifierStart(s.charAt(0))) {\n return false;\n }\n \n for (int i = 1; i < length; i++) {\n- if (\n+ if (Character.isIdentifierIgnorable(s.charAt(i)) ||\n !Character.isJavaIdentifierPart(s.charAt(i))) {\n return false;\n }\n", + "failingTests": [ + { + "className": " com.google.javascript.jscomp.ConvertToDottedPropertiesTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testQuotedProps" + }, + { + "className": " com.google.javascript.jscomp.ConvertToDottedPropertiesTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testDoNotConvert" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 1, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 2, + "spreadAllLines": 5, + "spreadCodeOnly": 4 + }, + "observations": "", + "program": "closure-compiler", + "project": "Closure", + "repairActions": [ + "condExpExpand", + "mcAdd" + ], + "repairPatterns": [ + "copyPaste", + "expLogicExpand" + ], + "repairTools": [ + "rtDynaMoth", + "rtNopol" + ], + "revisionId": "7f6700e2b54af3af409f3e8851a0d98a72beef4b" + }, + { + "bugId": 8, + "changedFiles": { + "org/apache/commons/lang3/time/FastDatePrinter.java": { + "deletes": [ + [ + 1098 + ], + [ + 1112 + ] + ], + "inserts": [ + [ + 1134 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/lang3/time/FastDatePrinter.java\n+++ b/src/main/java/org/apache/commons/lang3/time/FastDatePrinter.java\n@@ -1095,7 +1095,6 @@ static String getTimeZoneDisplay(TimeZone tz, boolean daylight, int style, Local\n private static class TimeZoneNameRule implements Rule {\n private final Locale mLocale;\n private final int mStyle;\n- private final TimeZone zone;\n private final String mStandard;\n private final String mDaylight;\n \n@@ -1109,7 +1108,6 @@ static String getTimeZoneDisplay(TimeZone tz, boolean daylight, int style, Local\n TimeZoneNameRule(TimeZone timeZone, Locale locale, int style) {\n mLocale = locale;\n mStyle = style;\n- zone = timeZone;\n \n mStandard = getTimeZoneDisplay(timeZone, false, style, locale);\n mDaylight = getTimeZoneDisplay(timeZone, true, style, locale);\n@@ -1131,6 +1129,7 @@ public int estimateLength() {\n */\n @Override\n public void appendTo(StringBuffer buffer, Calendar calendar) {\n+ TimeZone zone = calendar.getTimeZone();\n if (zone.useDaylightTime()\n && calendar.get(Calendar.DST_OFFSET) != 0) {\n buffer.append(getTimeZoneDisplay(zone, true, mStyle, mLocale));\n", + "failingTests": [ + { + "className": " org.apache.commons.lang3.time.FastDateFormat_PrinterTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<11:03PM [CL]T> but was:<11:03PM [PS]T>", + "methodName": "testCalendarTimezoneRespected" + }, + { + "className": " org.apache.commons.lang3.time.FastDatePrinterTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<11:03PM [CL]T> but was:<11:03PM [PS]T>", + "methodName": "testCalendarTimezoneRespected" + } + ], + "metrics": { + "chunks": 3, + "classes": 1, + "files": 1, + "linesAdd": 1, + "linesMod": 0, + "linesRem": 2, + "methods": 2, + "sizeInLines": 3, + "spreadAllLines": 34, + "spreadCodeOnly": 14 + }, + "observations": "Transformed a class attribute in local var.", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "assignAdd", + "assignRem", + "mcAdd", + "varAdd", + "varRem" + ], + "repairPatterns": [ + "initFix", + "notClassified", + "wrongComp" + ], + "repairTools": [], + "revisionId": "a4a455053e7e4a77320efd6db0814f4de82d754d" + }, + { + "bugId": 10, + "changedFiles": { + "org/apache/commons/lang3/time/FastDateParser.java": { + "deletes": [ + [ + 304 + ], + [ + 307 + ], + [ + 308 + ], + [ + 309 + ], + [ + 310 + ], + [ + 311 + ], + [ + 312 + ], + [ + 313 + ], + [ + 314 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/lang3/time/FastDateParser.java\n+++ b/src/main/java/org/apache/commons/lang3/time/FastDateParser.java\n@@ -301,17 +301,8 @@ public Date parse(String source, ParsePosition pos) {\n * @return The StringBuilder\n */\n private static StringBuilder escapeRegex(StringBuilder regex, String value, boolean unquote) {\n- boolean wasWhite= false;\n for(int i= 0; i but was:", + "methodName": "testLANG_831" + }, + { + "className": " org.apache.commons.lang3.time.FastDateParserTest", + "error": "junit.framework.AssertionFailedError", + "message": "Expected FDF failure, but got Mon Mar 02 21:00:00 PST 1970 for [M E,3 Tue] using (\\p{IsNd}++)\\s*+(Fri|Friday|Mon|Monday|Sat|Saturday|Sun|Sunday|Thu|Thursday|Tue|Tuesday|Wed|Wednesday)", + "methodName": "testLANG_831" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 0, + "linesRem": 9, + "methods": 1, + "sizeInLines": 9, + "spreadAllLines": 2, + "spreadCodeOnly": 2 + }, + "observations": "", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "assignRem", + "condBranIfAdd", + "mcRem", + "varRem" + ], + "repairPatterns": [ + "condBlockRem" + ], + "repairTools": [ + "rtCardumen", + "rtDeepRepair" + ], + "revisionId": "afe5dff79fc23d222ba1f1481fbbf55e09d2e6da" + }, + { + "bugId": 11, + "changedFiles": { + "org/apache/commons/lang3/RandomStringUtils.java": { + "inserts": [ + [ + 245 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/lang3/RandomStringUtils.java\n+++ b/src/main/java/org/apache/commons/lang3/RandomStringUtils.java\n@@ -242,6 +242,10 @@ public static String random(int count, int start, int end, boolean letters, bool\n start = ' '; \n }\n }\n+ } else {\n+ if (end <= start) {\n+ throw new IllegalArgumentException(\"Parameter end (\" + end + \") must be greater than start (\" + start + \")\");\n+ }\n }\n \n char[] buffer = new char[count];\n", + "failingTests": [ + { + "className": " org.apache.commons.lang3.RandomStringUtilsTest", + "error": "junit.framework.AssertionFailedError", + "message": "Message (n must be positive) must contain 'start'", + "methodName": "testLANG807" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 4, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 4, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "condBranElseAdd", + "condBranIfAdd", + "exThrowsAdd", + "objInstAdd" + ], + "repairPatterns": [ + "condBlockExcAdd", + "condBlockOthersAdd" + ], + "repairTools": [], + "revisionId": "c821fafce06adefc040e8983fb12d49399a48627" + }, + { + "bugId": 9, + "changedFiles": { + "org/apache/commons/lang3/time/FastDateParser.java": { + "inserts": [ + [ + 144 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/lang3/time/FastDateParser.java\n+++ b/src/main/java/org/apache/commons/lang3/time/FastDateParser.java\n@@ -141,6 +141,9 @@ private void init() {\n currentFormatField= nextFormatField;\n currentStrategy= nextStrategy;\n }\n+ if (patternMatcher.regionStart() != patternMatcher.regionEnd()) {\n+ throw new IllegalArgumentException(\"Failed to parse \\\"\"+pattern+\"\\\" ; gave up at index \"+patternMatcher.regionStart());\n+ }\n if(currentStrategy.addRegex(this, regex)) {\n collector.add(currentStrategy);\n }\n", + "failingTests": [ + { + "className": " org.apache.commons.lang3.time.FastDateFormat_ParserTest", + "error": "junit.framework.AssertionFailedError", + "message": "Parsed dates should be equal expected: but was:", + "methodName": "testLANG_832" + }, + { + "className": " org.apache.commons.lang3.time.FastDateParserTest", + "error": "junit.framework.AssertionFailedError", + "message": "Expected FDF failure, but got Fri Jan 02 21:00:00 PST 1970 for ['d'd',d3] using d(\\p{IsNd}++)", + "methodName": "testLANG_832" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 3, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 3, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "condBranIfAdd", + "exThrowsAdd", + "mcAdd", + "objInstAdd" + ], + "repairPatterns": [ + "condBlockExcAdd" + ], + "repairTools": [], + "revisionId": "c45d5bff75edfef6387d40e681f9dc7c9b517bbb" + }, + { + "bugId": 13, + "changedFiles": { + "org/apache/commons/lang3/SerializationUtils.java": { + "inserts": [ + [ + -1 + ], + [ + 250, + 251, + 252 + ], + [ + 268 + ], + [ + 269 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/lang3/SerializationUtils.java\n+++ b/src/main/java/org/apache/commons/lang3/SerializationUtils.java\n@@ -217,58 +217,77 @@ public static Object deserialize(InputStream inputStream) {\n public static Object deserialize(byte[] objectData) {\n if (objectData == null) {\n throw new IllegalArgumentException(\"The byte[] must not be null\");\n }\n ByteArrayInputStream bais = new ByteArrayInputStream(objectData);\n return deserialize(bais);\n }\n \n /**\n *

Custom specialization of the standard JDK {@link java.io.ObjectInputStream}\n * that uses a custom ClassLoader to resolve a class.\n * If the specified ClassLoader is not able to resolve the class,\n * the context classloader of the current thread will be used.\n * This way, the standard deserialization work also in web-application\n * containers and application servers, no matter in which of the\n * ClassLoader the particular class that encapsulates\n * serialization/deserialization lives.

\n * \n *

For more in-depth information about the problem for which this\n * class here is a workaround, see the JIRA issue LANG-626.

\n */\n static class ClassLoaderAwareObjectInputStream extends ObjectInputStream {\n+ private static final Map> primitiveTypes = \n+ new HashMap>();\n private ClassLoader classLoader;\n \n /**\n * Constructor.\n * @param in The InputStream.\n * @param classLoader classloader to use\n * @throws IOException if an I/O error occurs while reading stream header.\n * @see java.io.ObjectInputStream\n */\n public ClassLoaderAwareObjectInputStream(InputStream in, ClassLoader classLoader) throws IOException {\n super(in);\n this.classLoader = classLoader;\n \n+ primitiveTypes.put(\"byte\", byte.class);\n+ primitiveTypes.put(\"short\", short.class);\n+ primitiveTypes.put(\"int\", int.class);\n+ primitiveTypes.put(\"long\", long.class);\n+ primitiveTypes.put(\"float\", float.class);\n+ primitiveTypes.put(\"double\", double.class);\n+ primitiveTypes.put(\"boolean\", boolean.class);\n+ primitiveTypes.put(\"char\", char.class);\n+ primitiveTypes.put(\"void\", void.class);\n }\n \n /**\n * Overriden version that uses the parametrized ClassLoader or the ClassLoader\n * of the current Thread to resolve the class.\n * @param desc An instance of class ObjectStreamClass.\n * @return A Class object corresponding to desc.\n * @throws IOException Any of the usual Input/Output exceptions.\n * @throws ClassNotFoundException If class of a serialized object cannot be found.\n */\n @Override\n protected Class resolveClass(ObjectStreamClass desc) throws IOException, ClassNotFoundException {\n String name = desc.getName();\n try {\n return Class.forName(name, false, classLoader);\n } catch (ClassNotFoundException ex) {\n+ try {\n return Class.forName(name, false, Thread.currentThread().getContextClassLoader());\n+ } catch (ClassNotFoundException cnfe) {\n+ Class cls = primitiveTypes.get(name);\n+ if (cls != null)\n+ return cls;\n+ else\n+ throw cnfe;\n+ }\n }\n }\n \n }\n \n }\n", + "failingTests": [ + { + "className": " org.apache.commons.lang3.SerializationUtilsTest", + "error": "org.apache.commons.lang3.SerializationException", + "message": "ClassNotFoundException while reading cloned object data", + "methodName": "testPrimitiveTypeClassSerialization" + } + ], + "metrics": { + "chunks": 4, + "classes": 1, + "files": 1, + "linesAdd": 19, + "linesMod": 0, + "linesRem": 0, + "methods": 2, + "sizeInLines": 19, + "spreadAllLines": 30, + "spreadCodeOnly": 12 + }, + "observations": "", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "assignAdd", + "condBranIfElseAdd", + "exThrowsAdd", + "exTryCatchAdd", + "mcAdd", + "objInstAdd", + "retBranchAdd", + "varAdd" + ], + "repairPatterns": [ + "condBlockExcAdd", + "condBlockRetAdd", + "initFix", + "wrapsTryCatch" + ], + "repairTools": [], + "revisionId": "bd59a1908a1df3364918be7b07782500616b15ac" + }, + { + "bugId": 12, + "changedFiles": { + "org/apache/commons/lang3/RandomStringUtils.java": { + "inserts": [ + [ + 230, + 231 + ], + [ + 232 + ], + [ + 238 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/lang3/RandomStringUtils.java\n+++ b/src/main/java/org/apache/commons/lang3/RandomStringUtils.java\n@@ -227,14 +227,21 @@ public static String random(int count, int start, int end, boolean letters, bool\n } else if (count < 0) {\n throw new IllegalArgumentException(\"Requested random string length \" + count + \" is less than 0.\");\n }\n+ if (chars != null && chars.length == 0) {\n+ throw new IllegalArgumentException(\"The chars array must not be empty\");\n+ }\n \n if (start == 0 && end == 0) {\n+ if (chars != null) {\n+ end = chars.length;\n+ } else {\n if (!letters && !numbers) {\n end = Integer.MAX_VALUE;\n } else {\n end = 'z' + 1;\n start = ' '; \n }\n+ }\n }\n \n char[] buffer = new char[count];\n", + "failingTests": [ + { + "className": " org.apache.commons.lang3.RandomStringUtilsTest", + "error": "java.lang.ArrayIndexOutOfBoundsException", + "message": "2094380118", + "methodName": "testExceptions" + }, + { + "className": " org.apache.commons.lang3.RandomStringUtilsTest", + "error": "java.lang.ArrayIndexOutOfBoundsException", + "message": "117011530", + "methodName": "testLANG805" + } + ], + "metrics": { + "chunks": 3, + "classes": 1, + "files": 1, + "linesAdd": 7, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 7, + "spreadAllLines": 8, + "spreadCodeOnly": 7 + }, + "observations": "", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "assignAdd", + "condBranIfAdd", + "condBranIfElseAdd", + "exThrowsAdd", + "objInstAdd" + ], + "repairPatterns": [ + "condBlockExcAdd", + "missNullCheckN", + "wrapsIfElse" + ], + "repairTools": [], + "revisionId": "c9d786a4fe2639581047d878a64bab6fb24f1ab3" + }, + { + "bugId": 18, + "changedFiles": { + "org/apache/commons/lang3/time/FastDateFormat.java": { + "changes": [ + [ + 495 + ], + [ + 496 + ], + [ + 498 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/lang3/time/FastDateFormat.java\n+++ b/src/main/java/org/apache/commons/lang3/time/FastDateFormat.java\n@@ -492,10 +492,10 @@ private void init() {\n rule = new TextField(Calendar.ERA, ERAs);\n break;\n case 'y': // year (number)\n- if (tokenLen >= 4) {\n- rule = selectNumberRule(Calendar.YEAR, tokenLen);\n- } else {\n+ if (tokenLen == 2) {\n rule = TwoDigitYearField.INSTANCE;\n+ } else {\n+ rule = selectNumberRule(Calendar.YEAR, tokenLen < 4 ? 4 : tokenLen);\n }\n break;\n case 'M': // month in year (text and number)\n", + "failingTests": [ + { + "className": " org.apache.commons.lang3.time.FastDateFormatTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected: but was:", + "methodName": "testFormat" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 2, + "linesMod": 1, + "linesRem": 2, + "methods": 1, + "sizeInLines": 5, + "spreadAllLines": 1, + "spreadCodeOnly": 1 + }, + "observations": "An existent if-else structure is removed and a new one is placed in an action that resembles a wrap-with replacement. An aditional wrap-with-IfElse is present in IfElse-CondExp form.", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "condBranIfElseAdd", + "condExpMod", + "mcParValChange" + ], + "repairPatterns": [ + "expLogicMod", + "wrapsIfElse" + ], + "repairTools": [], + "revisionId": "2aa9dca994b006ccbfcb528de5ff0da6a5578411" + }, + { + "bugId": 17, + "changedFiles": { + "org/apache/commons/lang3/text/translate/CharSequenceTranslator.java": { + "changes": [ + [ + 83 + ] + ], + "deletes": [ + [ + 90 + ], + [ + 101 + ], + [ + 94 + ], + [ + 96 + ], + [ + 97 + ], + [ + 98 + ], + [ + 102 + ] + ], + "inserts": [ + [ + 88, + 89 + ], + [ + 89 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/lang3/text/translate/CharSequenceTranslator.java\n+++ b/src/main/java/org/apache/commons/lang3/text/translate/CharSequenceTranslator.java\n@@ -80,26 +80,20 @@ public final void translate(CharSequence input, Writer out) throws IOException {\n return;\n }\n int pos = 0;\n- int len = Character.codePointCount(input, 0, input.length());\n+ int len = input.length();\n while (pos < len) {\n int consumed = translate(input, pos, out);\n if (consumed == 0) {\n char[] c = Character.toChars(Character.codePointAt(input, pos));\n out.write(c);\n+ pos+= c.length;\n+ continue;\n }\n- else {\n // // contract with translators is that they have to understand codepoints \n // // and they just took care of a surrogate pair\n for (int pt = 0; pt < consumed; pt++) {\n- if (pos < len - 2) {\n pos += Character.charCount(Character.codePointAt(input, pos));\n- } else {\n- pos++;\n- }\n- }\n- pos--;\n }\n- pos++;\n }\n }\n \n", + "failingTests": [ + { + "className": " org.apache.commons.lang3.StringEscapeUtilsTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected:<𠮷[A]> but was:<𠮷[?]>", + "methodName": "testLang720" + } + ], + "metrics": { + "chunks": 6, + "classes": 1, + "files": 1, + "linesAdd": 2, + "linesMod": 1, + "linesRem": 8, + "methods": 1, + "sizeInLines": 11, + "spreadAllLines": 11, + "spreadCodeOnly": 9 + }, + "observations": "Unwraps input.length() from \"Character.codePointCount()\" method. Unwraps \"for loop\" from else branch. Unwraps \"pos += ...\" from if-else branch.", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "assignAdd", + "assignExpChange", + "assignRem", + "condBranIfElseAdd", + "condBranRem", + "mcRem" + ], + "repairPatterns": [ + "initFix", + "missComp", + "unwrapIfElse", + "unwrapMethod" + ], + "repairTools": [], + "revisionId": "b4255e6d071dc8d48bfc51037cecb29097b9a49d" + }, + { + "bugId": 14, + "changedFiles": { + "org/apache/commons/lang3/StringUtils.java": { + "inserts": [ + [ + 788 + ], + [ + 789 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/lang3/StringUtils.java\n+++ b/src/main/java/org/apache/commons/lang3/StringUtils.java\n@@ -785,7 +785,10 @@ public static boolean equals(CharSequence cs1, CharSequence cs2) {\n if (cs1 == null || cs2 == null) {\n return false;\n }\n+ if (cs1 instanceof String && cs2 instanceof String) {\n return cs1.equals(cs2);\n+ }\n+ return CharSequenceUtils.regionMatches(cs1, false, 0, cs2, 0, Math.max(cs1.length(), cs2.length()));\n }\n \n /**\n", + "failingTests": [ + { + "className": " org.apache.commons.lang3.StringUtilsEqualsIndexOfTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testEquals" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 3, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 3, + "spreadAllLines": 1, + "spreadCodeOnly": 1 + }, + "observations": "", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "condBranIfAdd", + "mcAdd", + "retBranchAdd" + ], + "repairPatterns": [ + "wrapsIf" + ], + "repairTools": [ + "rtCardumen" + ], + "revisionId": "cf7211f9d7d70d56501d8c4c827bf9ce3cac5f0b" + }, + { + "bugId": 16, + "changedFiles": { + "org/apache/commons/lang3/math/NumberUtils.java": { + "changes": [ + [ + 458 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/lang3/math/NumberUtils.java\n+++ b/src/main/java/org/apache/commons/lang3/math/NumberUtils.java\n@@ -455,7 +455,7 @@ public static Number createNumber(String str) throws NumberFormatException {\n // a wrong value.\n return null;\n }\n- if (str.startsWith(\"0x\") || str.startsWith(\"-0x\")) {\n+ if (str.startsWith(\"0x\") || str.startsWith(\"-0x\") || str.startsWith(\"0X\") || str.startsWith(\"-0X\")) {\n return createInteger(str);\n } \n char lastChar = str.charAt(str.length() - 1);\n", + "failingTests": [ + { + "className": " org.apache.commons.lang3.math.NumberUtilsTest", + "error": "java.lang.NumberFormatException", + "message": "0Xfade is not a valid number.", + "methodName": "testCreateNumber" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "condExpExpand", + 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unrollVariableAssignments(var, fromTypeVarAssigns);\n \n // parameters must either be absent from the subject type, within\n // the bounds of the wildcard type, or be an exact match to the\n@@ -672,7 +672,7 @@ private static Type substituteTypeVariables(Type type, Map, Type\n : new HashMap, Type>(subtypeVarAssigns);\n \n // has target class been reached?\n- if (cls.getTypeParameters().length > 0 || toClass.equals(cls)) {\n+ if (toClass.equals(cls)) {\n return typeVarAssigns;\n }\n \n", + "failingTests": [ + { + "className": " org.apache.commons.lang3.reflect.TypeUtilsTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<2> but was:<0>", + "methodName": "testGetTypeArguments" + }, + { + "className": " org.apache.commons.lang3.reflect.TypeUtilsTest", + "error": "junit.framework.AssertionFailedError", + "message": "type class org.apache.commons.lang3.reflect.TypeUtilsTest$Thing not assignable to org.apache.commons.lang3.reflect.TypeUtilsTest.org.apache.commons.lang3.reflect.TypeUtilsTest$This!", + "methodName": "testIsAssignable" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 4, + "linesRem": 0, + "methods": 1, + "sizeInLines": 4, + "spreadAllLines": 453, + "spreadCodeOnly": 226 + }, + "observations": "Change local var type.", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "assignExpChange", + "condExpRed", + "loopCondChange", + "mcAdd" + ], + "repairPatterns": [ + "expLogicReduce", + "wrongMethodRef" + ], + "repairTools": [], + "revisionId": "8185a9e681d6de5f40b0ed07b40730c9761bad37" + }, + { + "bugId": 21, + "changedFiles": { + "org/apache/commons/lang3/time/DateUtils.java": { + "changes": [ + [ + 265 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/lang3/time/DateUtils.java\n+++ b/src/main/java/org/apache/commons/lang3/time/DateUtils.java\n@@ -262,7 +262,7 @@ public static 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input.charAt(index + 1) == '#') {\n+ if(input.charAt(index) == '&' && index < seqEnd - 2 && input.charAt(index + 1) == '#') {\n int start = index + 2;\n boolean isHex = false;\n \n@@ -47,11 +47,16 @@ public int translate(CharSequence input, int index, Writer out) throws IOExcepti\n isHex = true;\n \n // Check there's more than just an x after the &#\n+ if(start == seqEnd) {\n+ return 0;\n+ }\n }\n \n int end = start;\n // Note that this supports character codes without a ; on the end\n- while(input.charAt(end) != ';') \n+ while(end < seqEnd && ( (input.charAt(end) >= '0' && input.charAt(end) <= '9') ||\n+ (input.charAt(end) >= 'a' && input.charAt(end) <= 'f') ||\n+ (input.charAt(end) >= 'A' && input.charAt(end) <= 'F') ) )\n {\n end++;\n }\n@@ -76,8 +81,9 @@ public int translate(CharSequence input, int index, Writer out) throws IOExcepti\n out.write(entityValue);\n }\n \n+ boolean semiNext = (end != seqEnd) && (input.charAt(end) == ';');\n \n- return 2 + (end - start) + (isHex ? 1 : 0) + 1;\n+ return 2 + (end - start) + (isHex ? 1 : 0) + (semiNext ? 1 : 0);\n }\n return 0;\n }\n", + "failingTests": [ + { + "className": " org.apache.commons.lang3.text.translate.NumericEntityUnescaperTest", + "error": "java.lang.StringIndexOutOfBoundsException", + "message": "String index out of range: 19", + "methodName": "testUnfinishedEntity" + }, + { + "className": " org.apache.commons.lang3.text.translate.NumericEntityUnescaperTest", + "error": "java.lang.StringIndexOutOfBoundsException", + "message": "String index out of range: 7", + "methodName": "testOutOfBounds" + } + ], + "metrics": { + "chunks": 5, + "classes": 1, + "files": 1, + "linesAdd": 6, + "linesMod": 3, + "linesRem": 0, + "methods": 1, + "sizeInLines": 9, + "spreadAllLines": 38, + "spreadCodeOnly": 29 + }, + "observations": "", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "assignAdd", + "condBranIfAdd", + "condBranIfElseAdd", + "condExpMod", + "loopCondChange", + "mcAdd", + "mcRem", + 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to\n * @return true if this object equals the other, otherwise false\n */\n+ @Override\n+ public boolean equals(Object obj) {\n+ if (obj == this) {\n+ return true;\n+ }\n+ if (obj == null) {\n+ return false;\n+ }\n+ if (!super.equals(obj)) {\n+ return false;\n+ }\n+ if (ObjectUtils.notEqual(getClass(), obj.getClass())) {\n+ return false;\n+ }\n+ ExtendedMessageFormat rhs = (ExtendedMessageFormat)obj;\n+ if (ObjectUtils.notEqual(toPattern, rhs.toPattern)) {\n+ return false;\n+ }\n+ if (ObjectUtils.notEqual(registry, rhs.registry)) {\n+ return false;\n+ }\n+ return true;\n+ }\n \n /**\n * Return the hashcode.\n *\n * @return the hashcode\n */\n+ @Override\n+ public int hashCode() {\n+ int result = super.hashCode();\n+ result = HASH_SEED * result + ObjectUtils.hashCode(registry);\n+ result = HASH_SEED * result + ObjectUtils.hashCode(toPattern);\n+ return result;\n+ }\n \n /**\n * Get a custom format from a format description.\n", + "failingTests": [ + { + "className": " 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"--- a/src/main/java/org/apache/commons/lang3/math/Fraction.java\n+++ b/src/main/java/org/apache/commons/lang3/math/Fraction.java\n@@ -580,8 +580,14 @@ public Fraction pow(int power) {\n */\n private static int greatestCommonDivisor(int u, int v) {\n // From Commons Math:\n+ if ((u == 0) || (v == 0)) {\n+ if ((u == Integer.MIN_VALUE) || (v == Integer.MIN_VALUE)) {\n+ throw new ArithmeticException(\"overflow: gcd is 2^31\");\n+ }\n+ return Math.abs(u) + Math.abs(v);\n+ }\n //if either operand is abs 1, return 1:\n- if (Math.abs(u) <= 1 || Math.abs(v) <= 1) {\n+ if (Math.abs(u) == 1 || Math.abs(v) == 1) {\n return 1;\n }\n // keep u and v negative, as negative integers range down to\n", + "failingTests": [ + { + "className": " org.apache.commons.lang3.math.FractionTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<-1073741824> but was:<-2147483648>", + "methodName": "testReducedFactory_int_int" + }, + { + "className": " 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a/src/main/java/org/apache/commons/lang3/StringUtils.java\n+++ b/src/main/java/org/apache/commons/lang3/StringUtils.java\n@@ -3295,7 +3295,7 @@ public static String join(Object[] array, char separator, int startIndex, int en\n return EMPTY;\n }\n \n- StringBuilder buf = new StringBuilder((array[startIndex] == null ? 16 : array[startIndex].toString().length()) + 1);\n+ StringBuilder buf = new StringBuilder(noOfItems * 16);\n \n for (int i = startIndex; i < endIndex; i++) {\n if (i > startIndex) {\n@@ -3380,7 +3380,7 @@ public static String join(Object[] array, String separator, int startIndex, int\n return EMPTY;\n }\n \n- StringBuilder buf = new StringBuilder((array[startIndex] == null ? 16 : array[startIndex].toString().length()) + separator.length());\n+ StringBuilder buf = new StringBuilder(noOfItems * 16);\n \n for (int i = startIndex; i < endIndex; i++) {\n if (i > startIndex) {\n", + "failingTests": [ + { + "className": " org.apache.commons.lang3.StringUtilsTest", + "error": 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"--- a/src/main/java/org/apache/commons/lang3/math/NumberUtils.java\n+++ b/src/main/java/org/apache/commons/lang3/math/NumberUtils.java\n@@ -1410,7 +1410,7 @@ public static boolean isNumber(String str) {\n if (chars[i] == 'l'\n || chars[i] == 'L') {\n // not allowing L with an exponent or decimal point\n- return foundDigit && !hasExp;\n+ return foundDigit && !hasExp && !hasDecPoint;\n }\n // last character is illegal\n return false;\n", + "failingTests": [ + { + "className": " org.apache.commons.lang3.math.NumberUtilsTest", + "error": "junit.framework.AssertionFailedError", + "message": "isNumber(String) LANG-664 failed", + "methodName": "testIsNumber" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "retExpChange" + ], + 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+ [ + 92 + ], + [ + 93 + ], + [ + 94 + ], + [ + 95 + ], + [ + 96 + ], + [ + 97 + ], + [ + 98 + ], + [ + 99 + ], + [ + 100 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/lang3/text/translate/EntityArrays.java\n+++ b/src/main/java/org/apache/commons/lang3/text/translate/EntityArrays.java\n@@ -71,33 +71,33 @@\n {\"\\u00C7\", \"Ç\"}, // � - uppercase C, cedilla\n {\"\\u00C8\", \"È\"}, // � - uppercase E, grave accent\n {\"\\u00C9\", \"É\"}, // � - uppercase E, acute accent\n- {\"\\u00CB\", \"Ê\"}, // � - uppercase E, circumflex accent\n- {\"\\u00CC\", \"Ë\"}, // � - uppercase E, umlaut\n- {\"\\u00CD\", \"Ì\"}, // � - uppercase I, grave accent\n- {\"\\u00CE\", \"Í\"}, // � - uppercase I, acute accent\n- {\"\\u00CF\", \"Î\"}, // � - uppercase I, circumflex accent\n- {\"\\u00D0\", \"Ï\"}, // � - uppercase I, umlaut\n- {\"\\u00D1\", \"Ð\"}, // � - uppercase Eth, Icelandic\n- {\"\\u00D2\", \"Ñ\"}, // � - uppercase N, tilde\n- {\"\\u00D3\", \"Ò\"}, // � - uppercase O, grave accent\n- {\"\\u00D4\", \"Ó\"}, // � - uppercase O, acute accent\n- {\"\\u00D5\", \"Ô\"}, // � - uppercase O, circumflex accent\n- {\"\\u00D6\", \"Õ\"}, // � - uppercase O, tilde\n- {\"\\u00D7\", \"Ö\"}, // � - uppercase O, umlaut\n- {\"\\u00D8\", \"×\"}, // multiplication sign\n- {\"\\u00D9\", \"Ø\"}, // � - uppercase O, slash\n- {\"\\u00DA\", \"Ù\"}, // � - uppercase U, grave accent\n- {\"\\u00DB\", \"Ú\"}, // � - uppercase U, acute accent\n- {\"\\u00DC\", \"Û\"}, // � - uppercase U, circumflex accent\n- {\"\\u00DD\", \"Ü\"}, // � - uppercase U, umlaut\n- {\"\\u00DE\", \"Ý\"}, // � - uppercase Y, acute accent\n- {\"\\u00DF\", \"Þ\"}, // � - uppercase THORN, Icelandic\n- {\"\\u00E0\", \"ß\"}, // � - lowercase sharps, German\n- {\"\\u00E1\", \"à\"}, // � - lowercase a, grave accent\n- {\"\\u00E2\", \"á\"}, // � - lowercase a, acute accent\n- {\"\\u00E3\", \"â\"}, // � - lowercase a, circumflex accent\n- {\"\\u00E4\", \"ã\"}, // � - lowercase a, tilde\n- {\"\\u00E5\", \"ä\"}, // � - lowercase a, umlaut\n+ {\"\\u00CA\", \"Ê\"}, // � - uppercase E, circumflex accent\n+ {\"\\u00CB\", \"Ë\"}, // � - uppercase E, umlaut\n+ {\"\\u00CC\", \"Ì\"}, // � - uppercase I, grave accent\n+ {\"\\u00CD\", \"Í\"}, // � - uppercase I, acute accent\n+ {\"\\u00CE\", \"Î\"}, // � - uppercase I, circumflex accent\n+ {\"\\u00CF\", \"Ï\"}, // � - uppercase I, umlaut\n+ {\"\\u00D0\", \"Ð\"}, // � - uppercase Eth, Icelandic\n+ {\"\\u00D1\", \"Ñ\"}, // � - uppercase N, tilde\n+ {\"\\u00D2\", \"Ò\"}, // � - uppercase O, grave accent\n+ {\"\\u00D3\", \"Ó\"}, // � - uppercase O, acute accent\n+ {\"\\u00D4\", \"Ô\"}, // � - uppercase O, circumflex accent\n+ {\"\\u00D5\", \"Õ\"}, // � - uppercase O, tilde\n+ {\"\\u00D6\", \"Ö\"}, // � - uppercase O, umlaut\n+ {\"\\u00D7\", \"×\"}, // multiplication sign\n+ {\"\\u00D8\", \"Ø\"}, // � - uppercase O, slash\n+ {\"\\u00D9\", \"Ù\"}, // � - uppercase U, grave accent\n+ {\"\\u00DA\", \"Ú\"}, // � - uppercase U, acute accent\n+ {\"\\u00DB\", \"Û\"}, // � - uppercase U, circumflex accent\n+ {\"\\u00DC\", \"Ü\"}, // � - uppercase U, umlaut\n+ {\"\\u00DD\", \"Ý\"}, // � - uppercase Y, acute accent\n+ {\"\\u00DE\", \"Þ\"}, // � - uppercase THORN, Icelandic\n+ {\"\\u00DF\", \"ß\"}, // � - lowercase sharps, German\n+ {\"\\u00E0\", \"à\"}, // � - lowercase a, grave accent\n+ {\"\\u00E1\", \"á\"}, // � - lowercase a, acute accent\n+ {\"\\u00E2\", \"â\"}, // � - lowercase a, circumflex accent\n+ {\"\\u00E3\", \"ã\"}, // � - lowercase a, tilde\n+ {\"\\u00E4\", \"ä\"}, // � - lowercase a, umlaut\n {\"\\u00E5\", \"å\"}, // � - lowercase a, ring\n {\"\\u00E6\", \"æ\"}, // � - lowercase ae\n {\"\\u00E7\", \"ç\"}, // � - lowercase c, cedilla\n", + "failingTests": [ + { + "className": " org.apache.commons.lang3.text.translate.EntityArraysTest", + "error": "junit.framework.AssertionFailedError", + "message": "One or more errors detected", + "methodName": "testISO8859_1_ESCAPE" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + 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JAVA_VERSION_TRIM_SIZE));\n }\n \n", + "failingTests": [ + { + "className": " org.apache.commons.lang3.SystemUtilsTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<0> but was:<0.0>", + "methodName": "testJavaVersionAsInt" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Changes return type of method.", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "mdRetTyChange" + ], + "repairPatterns": [ + "singleLine" + ], + "repairTools": [], + "revisionId": "982e295053663787bb0396b81a8956c3c87dc25b" + }, + { + "bugId": 30, + "changedFiles": { + "org/apache/commons/lang3/StringUtils.java": { + "changes": [ + [ + 1443 + ], + [ + 1455 + ], + [ + 1457 + ], + [ + 1497 + ], + [ + 1576 + ] + ], + "inserts": [ + [ + 1376, + 1377 + ], + [ + 1377 + ], + [ + 1381, + 1382 + ], + 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public static int indexOfAny(CharSequence cs, String searchChars) {\n * false if no match or null input\n * @since 2.4\n */\n- public static boolean containsAny(CharSequence cs, char[] searchChars) {\n+ public static boolean containsAny(String cs, char[] searchChars) {\n if (isEmpty(cs) || ArrayUtils.isEmpty(searchChars)) {\n return false;\n }\n@@ -1452,9 +1460,12 @@ public static boolean containsAny(CharSequence cs, char[] searchChars) {\n char ch = cs.charAt(i);\n for (int j = 0; j < searchLength; j++) {\n if (searchChars[j] == ch) {\n- if (i < csLast && j < searchLast && ch >= Character.MIN_HIGH_SURROGATE && ch <= Character.MAX_HIGH_SURROGATE) {\n+ if (Character.isHighSurrogate(ch)) {\n+ if (j == searchLast) {\n // missing low surrogate, fine, like String.indexOf(String)\n- if (searchChars[j + 1] == cs.charAt(i + 1)) {\n+ return true;\n+ }\n+ if (i < csLast && searchChars[j + 1] == cs.charAt(i + 1)) {\n return true;\n }\n } else {\n@@ -1494,7 +1505,7 @@ public static boolean containsAny(CharSequence cs, char[] searchChars) {\n * @return the true if any of the chars are found, false if no match or null input\n * @since 2.4\n */\n- public static boolean containsAny(CharSequence cs, String searchChars) {\n+ public static boolean containsAny(String cs, String searchChars) {\n if (searchChars == null) {\n return false;\n }\n@@ -1530,13 +1541,21 @@ public static int indexOfAnyBut(CharSequence cs, char[] searchChars) {\n return INDEX_NOT_FOUND;\n }\n int csLen = cs.length();\n+ int csLast = csLen - 1;\n int searchLen = searchChars.length;\n+ int searchLast = searchLen - 1;\n outer:\n for (int i = 0; i < csLen; i++) {\n char ch = cs.charAt(i);\n for (int j = 0; j < searchLen; j++) {\n if (searchChars[j] == ch) {\n+ if (i < csLast && j < searchLast && Character.isHighSurrogate(ch)) {\n+ if (searchChars[j + 1] == cs.charAt(i + 1)) {\n+ continue outer;\n+ }\n+ } else {\n continue outer;\n+ }\n }\n }\n return i;\n@@ -1573,8 +1592,16 @@ public static int indexOfAnyBut(String str, String searchChars) {\n int strLen = str.length();\n for (int i = 0; i < strLen; i++) {\n char ch = str.charAt(i);\n- if (searchChars.indexOf(ch) < 0) {\n+ boolean chFound = searchChars.indexOf(ch) >= 0;\n+ if (i + 1 < strLen && Character.isHighSurrogate(ch)) {\n+ char ch2 = str.charAt(i + 1);\n+ if (chFound && searchChars.indexOf(ch2) < 0) {\n return i;\n+ }\n+ } else {\n+ if (!chFound) {\n+ return i;\n+ }\n }\n }\n return INDEX_NOT_FOUND;\n@@ -1675,14 +1702,25 @@ public static boolean containsNone(CharSequence cs, char[] searchChars) {\n return true;\n }\n int csLen = cs.length();\n+ int csLast = csLen - 1;\n int searchLen = searchChars.length;\n+ int searchLast = searchLen - 1;\n for (int i = 0; i < csLen; i++) {\n char ch = cs.charAt(i);\n for (int j = 0; j < searchLen; j++) {\n if (searchChars[j] == ch) {\n+ if (Character.isHighSurrogate(ch)) {\n+ if (j == searchLast) {\n // missing low surrogate, fine, like String.indexOf(String)\n+ return false;\n+ }\n+ if (i < csLast && searchChars[j + 1] == cs.charAt(i + 1)) {\n+ return false;\n+ }\n+ } else {\n // ch is in the Basic Multilingual Plane\n return false;\n+ }\n }\n }\n }\n", + "failingTests": [ + { + "className": " org.apache.commons.lang3.StringUtilsEqualsIndexOfTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected: but was:", + "methodName": "testContainsNone_CharArrayWithSupplementaryChars" + }, + { + "className": " org.apache.commons.lang3.StringUtilsEqualsIndexOfTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected: but was:", + "methodName": "testContainsNone_StringWithSupplementaryChars" + }, + { + "className": " org.apache.commons.lang3.StringUtilsEqualsIndexOfTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected: but was:", + "methodName": "testContainsAny_StringCharArrayWithBadSupplementaryChars" + }, + { + "className": " org.apache.commons.lang3.StringUtilsEqualsIndexOfTest", + "error": 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out.write(entityValue);\n+ }\n return 2 + (end - start) + (isHex ? 1 : 0) + 1;\n }\n return 0;\n", + "failingTests": [ + { + "className": " org.apache.commons.lang3.text.translate.NumericEntityUnescaperTest", + "error": "junit.framework.ComparisonFailure", + "message": "Failed to unescape numeric entities supplementary characters expected:<[𐰢]> but was:<[ఢ]>", + "methodName": "testSupplementaryUnescaping" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 6, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 6, + "spreadAllLines": 1, + "spreadCodeOnly": 1 + }, + "observations": "", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "condBranIfElseAdd", + "mcAdd", + "varAdd" + ], + "repairPatterns": [ + "wrapsIfElse" + ], + "repairTools": [], + "revisionId": "3e1afecc200d7e3be9537c95b7cf52a7c5031300" + }, + { + "bugId": 27, + "changedFiles": { + "org/apache/commons/lang3/math/NumberUtils.java": { + "changes": [ + [ + 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b/src/main/java/org/apache/commons/lang3/StringUtils.java\n@@ -1443,13 +1443,21 @@ public static boolean containsAny(CharSequence cs, char[] searchChars) {\n \t\t}\n \t\tint csLength = cs.length();\n \t\tint searchLength = searchChars.length;\n+\t\tint csLastIndex = csLength - 1;\n+\t\tint searchLastIndex = searchLength - 1;\n \t\tfor (int i = 0; i < csLength; i++) {\n \t\t\tchar ch = cs.charAt(i);\n \t\t\tfor (int j = 0; j < searchLength; j++) {\n \t\t\t\tif (searchChars[j] == ch) {\n+\t\t\t\t\tif (i < csLastIndex && j < searchLastIndex && ch >= Character.MIN_HIGH_SURROGATE && ch <= Character.MAX_HIGH_SURROGATE) {\n \t\t\t\t\t\t// ch is a supplementary character\n+\t\t\t\t\t\tif (searchChars[j + 1] == cs.charAt(i + 1)) {\n+\t\t\t\t\t\t\treturn true;\n+\t\t\t\t\t\t}\n+\t\t\t\t\t} else {\n \t\t\t\t\t\t// ch is in the Basic Multilingual Plane\n \t\t\t\t\t\treturn true;\n+\t\t\t\t\t}\n \t\t\t\t}\n \t\t\t}\n \t\t}\n", + "failingTests": [ + { + "className": " 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+ "bugId": 32, + "changedFiles": { + "org/apache/commons/lang3/builder/HashCodeBuilder.java": { + "changes": [ + [ + 104 + ], + [ + 105 + ], + [ + 106 + ], + [ + 107 + ], + [ + 108 + ], + [ + 109 + ], + [ + 152 + ], + [ + 538 + ] + ], + "inserts": [ + [ + 522 + ], + [ + 538 + ], + [ + 539 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/lang3/builder/HashCodeBuilder.java\n+++ b/src/main/java/org/apache/commons/lang3/builder/HashCodeBuilder.java\n@@ -101,12 +101,7 @@\n * \n * @since 2.3\n */\n- private static final ThreadLocal> REGISTRY = new ThreadLocal>() {\n- @Override\n- protected Set initialValue() {\n- return new HashSet();\n- }\n- };\n+ private static final ThreadLocal> REGISTRY = new ThreadLocal>();\n \n /*\n * N.B. we cannot store the actual objects in a HashSet, as that would use the very hashCode()\n@@ -149,7 +144,8 @@\n * @since 2.3\n */\n static boolean isRegistered(Object value) {\n- return getRegistry().contains(new IDKey(value));\n+ Set registry = getRegistry();\n+ return registry != null && registry.contains(new IDKey(value));\n }\n \n /**\n@@ -519,6 +515,11 @@ public static int reflectionHashCode(Object object, String[] excludeFields) {\n * The object to register.\n */\n static void register(Object value) {\n+ synchronized (HashCodeBuilder.class) {\n+ if (getRegistry() == null) {\n+ REGISTRY.set(new HashSet());\n+ }\n+ }\n getRegistry().add(new IDKey(value));\n }\n \n@@ -535,7 +536,15 @@ static void register(Object value) {\n * @since 2.3\n */\n static void unregister(Object value) {\n- getRegistry().remove(new IDKey(value));\n+ Set s = getRegistry();\n+ if (s != null) {\n+ s.remove(new IDKey(value));\n+ synchronized (HashCodeBuilder.class) {\n+ if (s.isEmpty()) {\n+ REGISTRY.remove();\n+ }\n+ }\n+ }\n }\n \n /**\n", + "failingTests": [ + { + "className": " org.apache.commons.lang3.builder.HashCodeBuilderTest", + "error": "junit.framework.AssertionFailedError", + "message": "Expected: but was: []", + "methodName": 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-907,7 +907,7 @@ private static String toCanonicalName(String className) {\n }\n Class[] classes = new Class[array.length];\n for (int i = 0; i < array.length; i++) {\n- classes[i] = array[i].getClass();\n+ classes[i] = array[i] == null ? null : array[i].getClass();\n }\n return classes;\n }\n", + "failingTests": [ + { + "className": " org.apache.commons.lang3.ClassUtilsTest", + "error": "java.lang.NullPointerException", + "message": "", + "methodName": "testToClass_object" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Wrap-with applied with IfElse-Expression", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "condBranIfElseAdd" + ], + "repairPatterns": [ + "missNullCheckP", + "singleLine", + "wrapsIfElse" + ], + "repairTools": [ + "rtElixir", + "rtJAID", + "rtssFix" + ], + "revisionId": "0603aef594fa60126c2d45f2ab164eee39f7b44c" + }, + { + "bugId": 34, + "changedFiles": { + "org/apache/commons/lang3/builder/ToStringStyle.java": { + "changes": [ + [ + 148 + ], + [ + 164 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/lang3/builder/ToStringStyle.java\n+++ b/src/main/java/org/apache/commons/lang3/builder/ToStringStyle.java\n@@ -145,7 +145,7 @@\n * @return Set the registry of objects being traversed\n */\n static Map getRegistry() {\n- return REGISTRY.get() != null ? REGISTRY.get() : Collections.emptyMap();\n+ return REGISTRY.get();\n }\n \n /**\n@@ -161,7 +161,7 @@\n */\n static boolean isRegistered(Object value) {\n Map m = getRegistry();\n- return m.containsKey(value);\n+ return m != null && m.containsKey(value);\n }\n \n /**\n", + "failingTests": [ + { + "className": " org.apache.commons.lang3.builder.ToStringBuilderTest", + "error": "junit.framework.AssertionFailedError", + "message": "Expected: but was: {}", + "methodName": "testObjectCycle" + }, + { + "className": " org.apache.commons.lang3.builder.ToStringBuilderTest", + "error": "junit.framework.AssertionFailedError", + "message": "Expected: but was: {}", + "methodName": "testReflectionHierarchy" + }, + { + "className": " org.apache.commons.lang3.builder.ToStringBuilderTest", + "error": "junit.framework.AssertionFailedError", + "message": "Expected: but was: {}", + "methodName": "testSelfInstanceTwoVarsReflectionObjectCycle" + }, + { + "className": " 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b/src/java/org/apache/commons/lang3/ArrayUtils.java\n@@ -2959,8 +2959,16 @@ public static boolean isEmpty(boolean[] array) {\n final Class type1 = array1.getClass().getComponentType();\n T[] joinedArray = (T[]) Array.newInstance(type1, array1.length + array2.length);\n System.arraycopy(array1, 0, joinedArray, 0, array1.length);\n+ try {\n System.arraycopy(array2, 0, joinedArray, array1.length, array2.length);\n+ } catch (ArrayStoreException ase) {\n // Check if problem is incompatible types\n+ final Class type2 = array2.getClass().getComponentType();\n+ if (!type1.isAssignableFrom(type2)){\n+ throw new IllegalArgumentException(\"Cannot store \"+type2.getName()+\" in an array of \"+type1.getName());\n+ }\n+ throw ase; // No, so rethrow original\n+ }\n return joinedArray;\n }\n \n", + "failingTests": [ + { + "className": " org.apache.commons.lang3.ArrayUtilsAddTest", + "error": "java.lang.ArrayStoreException", + "message": "", + "methodName": "testJira567" + } + ], + "metrics": { + 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IllegalArgumentException(\"Arguments cannot both be null\"); \n }\n @SuppressWarnings(\"unchecked\") // type must be T\n T[] newArray = (T[]) copyArrayGrow1(array, type);\n@@ -3571,7 +3571,7 @@ private static Object copyArrayGrow1(Object array, Class newArrayComponentTyp\n } else if (element != null) {\n clss = element.getClass();\n } else {\n- return (T[]) new Object[] { null };\n+ throw new IllegalArgumentException(\"Array and element cannot both be null\"); \n }\n @SuppressWarnings(\"unchecked\") // the add method creates an array of type clss, which is type T\n final T[] newArray = (T[]) add(array, index, element, clss);\n", + "failingTests": [ + { + "className": " org.apache.commons.lang3.ArrayUtilsAddTest", + "error": "java.lang.ClassCastException", + "message": "[Ljava.lang.Object; cannot be cast to [Ljava.lang.String;", + "methodName": "testLANG571" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 2, + "linesRem": 0, + "methods": 2, + "sizeInLines": 2, + "spreadAllLines": 278, + "spreadCodeOnly": 62 + }, + "observations": "Changes return of a null object to throw an Exception. The only statement of an existent \"else block\" is replaced by an exception throw.", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "assignRem", + "exThrowsAdd", + "objInstAdd", + "retRem" + ], + "repairPatterns": [ + "notClassified" + ], + "repairTools": [ + "rtAcs" + ], + "revisionId": "80bd78ea0685d28ddec9b8162d652db9dec949ce" + }, + { + "bugId": 38, + "changedFiles": { + "org/apache/commons/lang3/time/FastDateFormat.java": { + "inserts": [ + [ + 872 + ] + ] + } + }, + "diff": "--- a/src/java/org/apache/commons/lang3/time/FastDateFormat.java\n+++ b/src/java/org/apache/commons/lang3/time/FastDateFormat.java\n@@ -869,6 +869,7 @@ public StringBuffer format(Date date, StringBuffer buf) {\n */\n public StringBuffer format(Calendar calendar, StringBuffer buf) {\n if (mTimeZoneForced) {\n+ calendar.getTime(); /// LANG-538\n calendar = (Calendar) calendar.clone();\n calendar.setTimeZone(mTimeZone);\n }\n", + "failingTests": [ + { + "className": " org.apache.commons.lang3.time.FastDateFormatTest", + "error": "junit.framework.ComparisonFailure", + "message": "dateTime expected:<2009-10-16T[16]:42:16.000Z> but was:<2009-10-16T[08]:42:16.000Z>", + "methodName": "testLang538" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 1, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "mcAdd" + ], + "repairPatterns": [ + "missComp", + "singleLine" + ], + "repairTools": [ + "rtDeepRepair", + "rtElixir", + "rtGPFL", + "rtJAID" + ], + "revisionId": "a95e76eefb91bdd9cf1c22734874a3d3c95ed327" + }, + { + "bugId": 42, + "changedFiles": { + "org/apache/commons/lang/Entities.java": { + "changes": [ + [ + 828 + ] + ], + "inserts": [ + [ + 831 + ] + ] + } + }, + "diff": "--- a/src/java/org/apache/commons/lang/Entities.java\n+++ b/src/java/org/apache/commons/lang/Entities.java\n@@ -825,10 +825,15 @@ public String escape(String str) {\n public void escape(Writer writer, String str) throws IOException {\n int len = str.length();\n for (int i = 0; i < len; i++) {\n- char c = str.charAt(i);\n+ int c = Character.codePointAt(str, i); \n String entityName = this.entityName(c);\n if (entityName == null) {\n- if (c > 0x7F) {\n+ if (c >= 0x010000 && i < len - 1) {\n+ writer.write(\"&#\");\n+ writer.write(Integer.toString(c, 10));\n+ writer.write(';');\n+ i++;\n+ } else if (c > 0x7F) { \n writer.write(\"&#\");\n writer.write(Integer.toString(c, 10));\n writer.write(';');\n", + "failingTests": [ + { + "className": " org.apache.commons.lang.StringEscapeUtilsTest", + "error": "junit.framework.ComparisonFailure", + "message": "High unicode was not escaped correctly expected:<&#[119650];> but was:<&#[55348;�];>", + "methodName": "testEscapeHtmlHighUnicode" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 5, + "linesMod": 2, + "linesRem": 0, + "methods": 1, + "sizeInLines": 7, + "spreadAllLines": 2, + "spreadCodeOnly": 2 + }, + "observations": "", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "assignAdd", + "assignExpChange", + "condBranIfElseAdd", + "mcAdd", + "mcRepl", + "varTyChange" + ], + "repairPatterns": [ + "wrapsIfElse", + "wrongComp", + "wrongMethodRef" + ], + "repairTools": [], + "revisionId": "dd2ae757d12554f290931f0b3c05e33ad993ecd1" + }, + { + "bugId": 43, + "changedFiles": { + "org/apache/commons/lang/text/ExtendedMessageFormat.java": { + "inserts": [ + [ + 422 + ] + ] + } + }, + "diff": "--- a/src/java/org/apache/commons/lang/text/ExtendedMessageFormat.java\n+++ b/src/java/org/apache/commons/lang/text/ExtendedMessageFormat.java\n@@ -419,6 +419,7 @@ private StringBuffer appendQuotedString(String pattern, ParsePosition pos,\n int start = pos.getIndex();\n char[] c = pattern.toCharArray();\n if (escapingOn && c[start] == QUOTE) {\n+ next(pos);\n return appendTo == null ? null : appendTo.append(QUOTE);\n }\n int lastHold = start;\n", + "failingTests": [ + { + "className": " org.apache.commons.lang.text.ExtendedMessageFormatTest", + "error": "java.lang.OutOfMemoryError", + "message": "Java heap space", + "methodName": "testEscapedQuote_LANG_477" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 1, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "mcAdd" + ], + "repairPatterns": [ + "missComp", + "singleLine" + ], + "repairTools": [ + "rtElixir", + "rtHDRepair", + "rtssFix" + ], + "revisionId": "eb3e2ae1f3734986a9f0225c661888baac3cb13b" + }, + { + "bugId": 36, + "changedFiles": { + "org/apache/commons/lang3/math/NumberUtils.java": { + "changes": [ + [ + 491 + ] + ], + "inserts": [ + [ + 1388 + ] + ] + } + }, + "diff": "--- a/src/java/org/apache/commons/lang3/math/NumberUtils.java\n+++ b/src/java/org/apache/commons/lang3/math/NumberUtils.java\n@@ -488,7 +488,7 @@ public static Number createNumber(String str) throws NumberFormatException {\n }\n dec = null;\n }\n- if (!Character.isDigit(lastChar)) {\n+ if (!Character.isDigit(lastChar) && lastChar != '.') {\n if (expPos > -1 && expPos < str.length() - 1) {\n exp = str.substring(expPos + 1, str.length() - 1);\n } else {\n@@ -1385,6 +1385,14 @@ public static boolean isNumber(String str) {\n // can't have an E at the last byte\n return false;\n }\n+ if (chars[i] == '.') {\n+ if (hasDecPoint || hasExp) {\n+ // two decimal points or dec in exponent\n+ return false;\n+ }\n+ // single trailing decimal point after non-exponent is ok\n+ return foundDigit;\n+ }\n if (!allowSigns\n && (chars[i] == 'd'\n || chars[i] == 'D'\n", + "failingTests": [ + { + "className": " org.apache.commons.lang3.math.NumberUtilsTest", + "error": "java.lang.NumberFormatException", + "message": "2. is not a valid number.", + "methodName": "testCreateNumber" + }, + { + "className": " org.apache.commons.lang3.math.NumberUtilsTest", + "error": "junit.framework.AssertionFailedError", + "message": "isNumber(String) LANG-521 failed", + "methodName": "testIsNumber" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 8, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 9, + "spreadAllLines": 896, + "spreadCodeOnly": 471 + }, + "observations": "", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "condBranIfAdd", + "condExpExpand", + "retBranchAdd" + ], + "repairPatterns": [ + "condBlockRetAdd", + "expLogicExpand" + ], + "repairTools": [], + "revisionId": "da0612b348fcfa7679b92a5e9b8e1603e8e2da3a" + }, + { + "bugId": 39, + "changedFiles": { + "org/apache/commons/lang3/StringUtils.java": { + "inserts": [ + [ + 3676 + ] + ] + } + }, + "diff": "--- a/src/java/org/apache/commons/lang3/StringUtils.java\n+++ b/src/java/org/apache/commons/lang3/StringUtils.java\n@@ -3673,6 +3673,9 @@ private static String replaceEach(String text, String[] searchList, String[] rep\n \n // count the replacement text elements that are larger than their corresponding text being replaced\n for (int i = 0; i < searchList.length; i++) {\n+ if (searchList[i] == null || replacementList[i] == null) {\n+ continue;\n+ }\n int greater = replacementList[i].length() - searchList[i].length();\n if (greater > 0) {\n increase += 3 * greater; // assume 3 matches\n", + "failingTests": [ + { + "className": " org.apache.commons.lang3.StringUtilsTest", + "error": "java.lang.NullPointerException", + "message": "", + "methodName": "testReplace_StringStringArrayStringArray" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 3, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 3, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "condBranIfAdd" + ], + "repairPatterns": [ + "condBlockOthersAdd", + "missComp", + "missNullCheckP" + ], + "repairTools": [ + "rtCardumen", + "rtDeepRepair", + "rtElixir", + "rtGPFL", + "rtJAID" + ], + "revisionId": "cb40e35f5e0990fad4c5278964fcc24e112dde8c" + }, + { + "bugId": 41, + "changedFiles": { + "org/apache/commons/lang/ClassUtils.java": { + "changes": [ + [ + 203 + ], + [ + 245 + ] + ], + "inserts": [ + [ + 190, + 191, + 192, + 193, + 194, + 195, + 196 + ], + [ + 248, + 249, + 250, + 251, + 252 + ] + ] + } + }, + "diff": "--- a/src/java/org/apache/commons/lang/ClassUtils.java\n+++ b/src/java/org/apache/commons/lang/ClassUtils.java\n@@ -188,10 +188,23 @@ public static String getShortClassName(String className) {\n return StringUtils.EMPTY;\n }\n \n+ StringBuffer arrayPrefix = new StringBuffer();\n \n // Handle array encoding\n+ if (className.startsWith(\"[\")) {\n+ while (className.charAt(0) == '[') {\n+ className = className.substring(1);\n+ arrayPrefix.append(\"[]\");\n+ }\n // Strip Object type encoding\n+ if (className.charAt(0) == 'L' && className.charAt(className.length() - 1) == ';') {\n+ className = className.substring(1, className.length() - 1);\n+ }\n+ }\n \n+ if (reverseAbbreviationMap.containsKey(className)) {\n+ className = reverseAbbreviationMap.get(className);\n+ }\n \n int lastDotIdx = className.lastIndexOf(PACKAGE_SEPARATOR_CHAR);\n int innerIdx = className.indexOf(\n@@ -200,7 +213,7 @@ public static String getShortClassName(String className) {\n if (innerIdx != -1) {\n out = out.replace(INNER_CLASS_SEPARATOR_CHAR, PACKAGE_SEPARATOR_CHAR);\n }\n- return out;\n+ return out + arrayPrefix;\n }\n \n // Package name\n@@ -242,12 +255,18 @@ public static String getPackageName(Class cls) {\n * @return the package name or an empty string\n */\n public static String getPackageName(String className) {\n- if (className == null) {\n+ if (className == null || className.length() == 0) {\n return StringUtils.EMPTY;\n }\n \n // Strip array encoding\n+ while (className.charAt(0) == '[') {\n+ className = className.substring(1);\n+ }\n // Strip Object type encoding\n+ if (className.charAt(0) == 'L' && className.charAt(className.length() - 1) == ';') {\n+ className = className.substring(1);\n+ }\n \n int i = className.lastIndexOf(PACKAGE_SEPARATOR_CHAR);\n if (i == -1) {\n", + "failingTests": [ + { + "className": " org.apache.commons.lang.ClassUtilsTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected: but was:", + "methodName": "test_getShortClassName_Class" + }, + { + "className": " org.apache.commons.lang.ClassUtilsTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected:<[]java.lang> but was:<[[L]java.lang>", + "methodName": "test_getPackageName_Class" + } + ], + "metrics": { + "chunks": 8, + "classes": 1, + "files": 1, + "linesAdd": 19, + "linesMod": 2, + "linesRem": 0, + "methods": 2, + "sizeInLines": 21, + "spreadAllLines": 58, + "spreadCodeOnly": 23 + }, + "observations": "Existent condittional expression with null-check is expanded.", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "assignAdd", + "condBranIfAdd", + "condExpExpand", + "loopAdd", + "mcAdd", + "objInstAdd", + "retExpChange", + "varAdd" + ], + "repairPatterns": [ + "condBlockOthersAdd", + "expLogicExpand", + "missComp" + ], + "repairTools": [], + "revisionId": "4d3629f310e84cc24c0e5f09d97f5126692d0128" + }, + { + "bugId": 40, + "changedFiles": { + "org/apache/commons/lang/StringUtils.java": { + "changes": [ + [ + 1048 + ] + ] + } + }, + "diff": "--- a/src/java/org/apache/commons/lang/StringUtils.java\n+++ b/src/java/org/apache/commons/lang/StringUtils.java\n@@ -1045,7 +1045,14 @@ public static boolean containsIgnoreCase(String str, String searchStr) {\n if (str == null || searchStr == null) {\n return false;\n }\n- return contains(str.toUpperCase(), searchStr.toUpperCase());\n+ int len = searchStr.length();\n+ int max = str.length() - len;\n+ for (int i = 0; i <= max; i++) {\n+ if (str.regionMatches(true, i, searchStr, 0, len)) {\n+ return true;\n+ }\n+ }\n+ return false;\n }\n \n // IndexOfAny chars\n", + "failingTests": [ + { + "className": " org.apache.commons.lang.StringUtilsEqualsIndexOfTest", + "error": "junit.framework.AssertionFailedError", + "message": "en: 0 ß SS", + "methodName": "testContainsIgnoreCase_LocaleIndependence" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 7, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 8, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "assignAdd", + "loopAdd", + "mcAdd", + "mcRem", + "retBranchAdd", + "retExpChange", + "varAdd" + ], + "repairPatterns": [ + "condBlockRetAdd", + "wrongComp" + ], + "repairTools": [], + "revisionId": "8b1a8e178abb46cc048a3982636b8ec4e6ffc8dc" + }, + { + "bugId": 44, + "changedFiles": { + "org/apache/commons/lang/NumberUtils.java": { + "inserts": [ + [ + 145 + ] + ] + } + }, + "diff": "--- a/src/java/org/apache/commons/lang/NumberUtils.java\n+++ b/src/java/org/apache/commons/lang/NumberUtils.java\n@@ -142,6 +142,9 @@ public static Number createNumber(String val) throws NumberFormatException {\n if (val.length() == 0) {\n throw new NumberFormatException(\"\\\"\\\" is not a valid number.\");\n }\n+ if (val.length() == 1 && !Character.isDigit(val.charAt(0))) {\n+ throw new NumberFormatException(val + \" is not a valid number.\");\n+ }\n if (val.startsWith(\"--\")) {\n // this is protection for poorness in java.lang.BigDecimal.\n // it accepts this as a legal value, but it does not appear \n", + "failingTests": [ + { + "className": " org.apache.commons.lang.NumberUtilsTest", + "error": "java.lang.StringIndexOutOfBoundsException", + "message": "String index out of range: 0", + "methodName": "testLang457" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 3, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 3, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "condBranIfAdd", + "exThrowsAdd", + "mcAdd", + "objInstAdd" + ], + "repairPatterns": [ + "condBlockExcAdd" + ], + "repairTools": [ + "rtDynaMoth", + "rtElixir", + "rtNopol" + ], + "revisionId": "81f10d7f1ef52d44f43b38d81ac3dc1c83d45134" + }, + { + "bugId": 45, + "changedFiles": { + "org/apache/commons/lang/WordUtils.java": { + "inserts": [ + [ + 613, + 614, + 615, + 616, + 617, + 618 + ] + ] + } + }, + "diff": "--- a/src/java/org/apache/commons/lang/WordUtils.java\n+++ b/src/java/org/apache/commons/lang/WordUtils.java\n@@ -613,6 +613,9 @@ public static String abbreviate(String str, int lower, int upper, String appendT\n \n // if the lower value is greater than the length of the string,\n // set to the length of the string\n+ if (lower > str.length()) {\n+ lower = str.length(); \n+ }\n // if the upper value is -1 (i.e. no limit) or is greater\n // than the length of the string, set to the length of the string\n if (upper == -1 || upper > str.length()) {\n", + "failingTests": [ + { + "className": " org.apache.commons.lang.WordUtilsTest", + "error": "java.lang.StringIndexOutOfBoundsException", + "message": "String index out of range: 15", + "methodName": "testAbbreviate" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 3, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 3, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "assignAdd", + "condBranIfAdd", + "mcAdd" + ], + "repairPatterns": [ + "condBlockOthersAdd", + "missComp" + ], + "repairTools": [ + "rtJAID" + ], + "revisionId": "d95fcd8e24568b4f9d3cb9da922a4029e293c793" + }, + { + "bugId": 47, + "changedFiles": { + "org/apache/commons/lang/text/StrBuilder.java": { + "inserts": [ + [ + 1186 + ], + [ + 1230 + ] + ] + } + }, + "diff": "--- a/src/java/org/apache/commons/lang/text/StrBuilder.java\n+++ b/src/java/org/apache/commons/lang/text/StrBuilder.java\n@@ -1183,6 +1183,9 @@ public StrBuilder appendFixedWidthPadLeft(Object obj, int width, char padChar) {\n if (width > 0) {\n ensureCapacity(size + width);\n String str = (obj == null ? getNullText() : obj.toString());\n+ if (str == null) {\n+ str = \"\";\n+ }\n int strLen = str.length();\n if (strLen >= width) {\n str.getChars(strLen - width, strLen, buffer, size);\n@@ -1227,6 +1230,9 @@ public StrBuilder appendFixedWidthPadRight(Object obj, int width, char padChar)\n if (width > 0) {\n ensureCapacity(size + width);\n String str = (obj == null ? getNullText() : obj.toString());\n+ if (str == null) {\n+ str = \"\";\n+ }\n int strLen = str.length();\n if (strLen >= width) {\n str.getChars(0, width, buffer, size);\n", + "failingTests": [ + { + "className": " org.apache.commons.lang.text.StrBuilderTest", + "error": "java.lang.NullPointerException", + "message": "", + "methodName": "testLang412Left" + }, + { + "className": " org.apache.commons.lang.text.StrBuilderTest", + "error": "java.lang.NullPointerException", + "message": "", + "methodName": "testLang412Right" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 6, + "linesMod": 0, + "linesRem": 0, + "methods": 2, + "sizeInLines": 6, + "spreadAllLines": 44, + "spreadCodeOnly": 21 + }, + "observations": "", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "assignAdd", + "condBranIfAdd" + ], + "repairPatterns": [ + "condBlockOthersAdd", + "copyPaste", + "missNullCheckP" + ], + "repairTools": [], + "revisionId": "d5e343049c2610c31ddacb24f0d173942f6d5ac9" + }, + { + "bugId": 48, + "changedFiles": { + "org/apache/commons/lang/builder/EqualsBuilder.java": { + "inserts": [ + [ + 380, + 381 + ], + [ + 382 + ] + ] + } + }, + "diff": "--- a/src/java/org/apache/commons/lang/builder/EqualsBuilder.java\n+++ b/src/java/org/apache/commons/lang/builder/EqualsBuilder.java\n@@ -377,8 +377,12 @@ public EqualsBuilder append(Object lhs, Object rhs) {\n }\n Class lhsClass = lhs.getClass();\n if (!lhsClass.isArray()) {\n+ if (lhs instanceof java.math.BigDecimal) {\n+ isEquals = (((java.math.BigDecimal)lhs).compareTo(rhs) == 0);\n+ } else {\n // The simple case, not an array, just test the element\n isEquals = lhs.equals(rhs);\n+ }\n } else if (lhs.getClass() != rhs.getClass()) {\n // Here when we compare different dimensions, for example: a boolean[][] to a boolean[] \n this.setEquals(false);\n", + "failingTests": [ + { + "className": " org.apache.commons.lang.builder.EqualsBuilderTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testBigDecimal" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 4, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 4, + "spreadAllLines": 2, + "spreadCodeOnly": 1 + }, + "observations": "", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "assignAdd", + "condBranIfElseAdd", + "mcAdd" + ], + "repairPatterns": [ + "wrapsIfElse" + ], + "repairTools": [], + "revisionId": "eb8f74efb75e71fc91e515a38becc2aac203e339" + }, + { + "bugId": 52, + "changedFiles": { + "org/apache/commons/lang/StringEscapeUtils.java": { + "inserts": [ + [ + 222, + 228, + 232, + 236 + ] + ] + } + }, + "diff": "--- a/src/java/org/apache/commons/lang/StringEscapeUtils.java\n+++ b/src/java/org/apache/commons/lang/StringEscapeUtils.java\n@@ -233,6 +233,10 @@ private static void escapeJavaStyleString(Writer out, String str, boolean escape\n out.write('\\\\');\n out.write('\\\\');\n break;\n+ case '/':\n+ out.write('\\\\');\n+ out.write('/');\n+ break;\n default :\n out.write(ch);\n break;\n", + "failingTests": [ + { + "className": " org.apache.commons.lang.StringEscapeUtilsTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected:<...ipt>alert(\\'aaa\\');<[\\]/script>\\';> but was:<...ipt>alert(\\'aaa\\');<[]/script>\\';>", + "methodName": "testEscapeJavaScript" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 4, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 4, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "condBranCaseAdd", + "mcAdd" + ], + "repairPatterns": [ + "condBlockOthersAdd" + ], + "repairTools": [], + "revisionId": "868f6976aea222e96259843f56df9aed8e48584b" + }, + { + "bugId": 53, + "changedFiles": { + "org/apache/commons/lang/time/DateUtils.java": { + "deletes": [ + [ + 643 + ], + [ + 644 + ], + [ + 645 + ], + [ + 652 + ], + [ + 653 + ], + [ + 654 + ] + ], + "inserts": [ + [ + 647, + 648, + 649 + ], + [ + 656, + 657, + 658 + ] + ] + } + }, + "diff": "--- a/src/java/org/apache/commons/lang/time/DateUtils.java\n+++ b/src/java/org/apache/commons/lang/time/DateUtils.java\n@@ -640,18 +640,18 @@ private static void modify(Calendar val, int field, boolean round) {\n int millisecs = val.get(Calendar.MILLISECOND);\n if (!round || millisecs < 500) {\n time = time - millisecs;\n+ }\n if (field == Calendar.SECOND) {\n done = true;\n- }\n }\n \n // truncate seconds\n int seconds = val.get(Calendar.SECOND);\n if (!done && (!round || seconds < 30)) {\n time = time - (seconds * 1000L);\n+ }\n if (field == Calendar.MINUTE) {\n done = true;\n- }\n }\n \n // truncate minutes\n", + "failingTests": [ + { + "className": " org.apache.commons.lang.time.DateUtilsTest", + "error": "junit.framework.AssertionFailedError", + "message": "Minute Round Up Failed expected: but was:", + "methodName": "testRoundLang346" + } + ], + "metrics": { + "chunks": 4, + "classes": 1, + "files": 1, + "linesAdd": 2, + "linesMod": 0, + "linesRem": 2, + "methods": 1, + "sizeInLines": 4, + "spreadAllLines": 10, + "spreadCodeOnly": 8 + }, + "observations": "", + "program": "commons-lang", + "project": "Lang", + "repairActions": [], + "repairPatterns": [ + "codeMove", + "copyPaste", + "unwrapIfElse" + ], + "repairTools": [ + "rtDynaMoth", + "rtNopol" + ], + "revisionId": "d3b1163073c7aeb6011a5b65bfadad15bfc0f108" + }, + { + "bugId": 46, + "changedFiles": { + "org/apache/commons/lang/StringEscapeUtils.java": { + "changes": [ + [ + 86 + ], + [ + 102 + ], + [ + 127 + ], + [ + 143 + ], + [ + 154 + ], + [ + 160 + ], + [ + 178 + ] + ], + "inserts": [ + [ + 244 + ], + [ + 245 + ] + ] + } + }, + "diff": "--- a/src/java/org/apache/commons/lang/StringEscapeUtils.java\n+++ b/src/java/org/apache/commons/lang/StringEscapeUtils.java\n@@ -83,7 +83,7 @@ public StringEscapeUtils() {\n * @return String with escaped values, null if null string input\n */\n public static String escapeJava(String str) {\n- return escapeJavaStyleString(str, false);\n+ return escapeJavaStyleString(str, false, false);\n }\n \n /**\n@@ -99,7 +99,7 @@ public static String escapeJava(String str) {\n * @throws IOException if error occurs on underlying Writer\n */\n public static void escapeJava(Writer out, String str) throws IOException {\n- escapeJavaStyleString(out, str, false);\n+ escapeJavaStyleString(out, str, false, false);\n }\n \n /**\n@@ -124,7 +124,7 @@ public static void escapeJava(Writer out, String str) throws IOException {\n * @return String with escaped values, null if null string input\n */\n public static String escapeJavaScript(String str) {\n- return escapeJavaStyleString(str, true);\n+ return escapeJavaStyleString(str, true, true);\n }\n \n /**\n@@ -140,7 +140,7 @@ public static String escapeJavaScript(String str) {\n * @throws IOException if error occurs on underlying Writer\n **/\n public static void escapeJavaScript(Writer out, String str) throws IOException {\n- escapeJavaStyleString(out, str, true);\n+ escapeJavaStyleString(out, str, true, true);\n }\n \n /**\n@@ -151,13 +151,13 @@ public static void escapeJavaScript(Writer out, String str) throws IOException {\n * @param escapeForwardSlash TODO\n * @return the escaped string\n */\n- private static String escapeJavaStyleString(String str, boolean escapeSingleQuotes) {\n+ private static String escapeJavaStyleString(String str, boolean escapeSingleQuotes, boolean escapeForwardSlash) {\n if (str == null) {\n return null;\n }\n try {\n StringWriter writer = new StringWriter(str.length() * 2);\n- escapeJavaStyleString(writer, str, escapeSingleQuotes);\n+ escapeJavaStyleString(writer, str, escapeSingleQuotes, escapeForwardSlash);\n return writer.toString();\n } catch (IOException ioe) {\n // this should never ever happen while writing to a StringWriter\n@@ -175,7 +175,8 @@ private static String escapeJavaStyleString(String str, boolean escapeSingleQuot\n * @param escapeForwardSlash TODO\n * @throws IOException if an IOException occurs\n */\n- private static void escapeJavaStyleString(Writer out, String str, boolean escapeSingleQuote) throws IOException {\n+ private static void escapeJavaStyleString(Writer out, String str, boolean escapeSingleQuote,\n+ boolean escapeForwardSlash) throws IOException {\n if (out == null) {\n throw new IllegalArgumentException(\"The Writer must not be null\");\n }\n@@ -241,7 +242,9 @@ private static void escapeJavaStyleString(Writer out, String str, boolean escape\n out.write('\\\\');\n break;\n case '/' :\n+ if (escapeForwardSlash) {\n out.write('\\\\');\n+ }\n out.write('/');\n break;\n default :\n", + "failingTests": [ + { + "className": " org.apache.commons.lang.StringEscapeUtilsTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected:<...tring with a slash ([]/) in it> but was:<...tring with a slash ([\\]/) in it>", + "methodName": "testEscapeJavaWithSlash" + } + ], + "metrics": { + "chunks": 9, + "classes": 1, + "files": 1, + "linesAdd": 3, + "linesMod": 7, + "linesRem": 0, + "methods": 6, + "sizeInLines": 10, + "spreadAllLines": 152, + "spreadCodeOnly": 82 + }, + "observations": "", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "condBranIfAdd", + "mcParAdd", + "mcRepl", + "mdParAdd", + "retExpChange" + ], + "repairPatterns": [ + "wrapsIf" + ], + "repairTools": [], + "revisionId": "916639bda234a8e5a030361c4068667764b34cb7" + }, + { + "bugId": 50, + "changedFiles": { + "org/apache/commons/lang/time/FastDateFormat.java": { + "changes": [ + [ + 285 + ], + [ + 465 + ] + ], + "deletes": [ + [ + 286 + ], + [ + 292 + ], + [ + 293 + ], + [ + 294 + ], + [ + 466 + ], + [ + 471 + ], + [ + 472 + ], + [ + 473 + ] + ], + "inserts": [ + [ + 286, + 287 + ], + [ + 288, + 289, + 290 + ], + [ + 466, + 467 + ], + [ + 468, + 469 + ] + ] + } + }, + "diff": "--- a/src/java/org/apache/commons/lang/time/FastDateFormat.java\n+++ b/src/java/org/apache/commons/lang/time/FastDateFormat.java\n@@ -282,16 +282,14 @@ public static synchronized FastDateFormat getDateInstance(int style, TimeZone ti\n key = new Pair(key, timeZone);\n }\n \n- if (locale != null) {\n- key = new Pair(key, locale);\n+ if (locale == null) {\n+ locale = Locale.getDefault();\n }\n \n+ key = new Pair(key, locale);\n \n FastDateFormat format = (FastDateFormat) cDateInstanceCache.get(key);\n if (format == null) {\n- if (locale == null) {\n- locale = Locale.getDefault();\n- }\n try {\n SimpleDateFormat formatter = (SimpleDateFormat) DateFormat.getDateInstance(style, locale);\n String pattern = formatter.toPattern();\n@@ -462,15 +460,13 @@ public static synchronized FastDateFormat getDateTimeInstance(int dateStyle, int\n if (timeZone != null) {\n key = new Pair(key, timeZone);\n }\n- if (locale != null) {\n- key = new Pair(key, locale);\n+ if (locale == null) {\n+ locale = Locale.getDefault();\n }\n+ key = new Pair(key, locale);\n \n FastDateFormat format = (FastDateFormat) cDateTimeInstanceCache.get(key);\n if (format == null) {\n- if (locale == null) {\n- locale = Locale.getDefault();\n- }\n try {\n SimpleDateFormat formatter = (SimpleDateFormat) DateFormat.getDateTimeInstance(dateStyle, timeStyle,\n locale);\n", + "failingTests": [ + { + "className": " org.apache.commons.lang.time.FastDateFormatTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected same: was not:", + "methodName": "test_changeDefault_Locale_DateInstance" + }, + { + "className": " org.apache.commons.lang.time.FastDateFormatTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected same: was not:", + "methodName": "test_changeDefault_Locale_DateTimeInstance" + } + ], + "metrics": { + "chunks": 6, + "classes": 1, + "files": 1, + "linesAdd": 2, + "linesMod": 4, + "linesRem": 6, + "methods": 2, + "sizeInLines": 12, + "spreadAllLines": 179, + "spreadCodeOnly": 68 + }, + "observations": "Replaces some existent Null-Chek, inverting postive by negative.", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "assignAdd", + "assignRem", + "condBranRem", + "condExpMod", + "mcAdd", + "mcRem", + "objInstAdd", + "objInstRem" + ], + "repairPatterns": [ + "condBlockRem", + "copyPaste", + "expLogicMod", + "unwrapIfElse", + "wrongComp" + ], + "repairTools": [], + "revisionId": "659ef247b1452b6d5b9f92271357381fa59fea50" + }, + { + "bugId": 51, + "changedFiles": { + "org/apache/commons/lang/BooleanUtils.java": { + "inserts": [ + [ + 682 + ] + ] + } + }, + "diff": "--- a/src/java/org/apache/commons/lang/BooleanUtils.java\n+++ b/src/java/org/apache/commons/lang/BooleanUtils.java\n@@ -679,6 +679,7 @@ public static boolean toBoolean(String str) {\n (str.charAt(1) == 'E' || str.charAt(1) == 'e') &&\n (str.charAt(2) == 'S' || str.charAt(2) == 's');\n }\n+ return false;\n }\n case 4: {\n char ch = str.charAt(0);\n", + "failingTests": [ + { + "className": " org.apache.commons.lang.BooleanUtilsTest", + "error": "java.lang.StringIndexOutOfBoundsException", + "message": "String index out of range: 3", + "methodName": "test_toBoolean_String" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 1, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Adds a return statement that does the role of an \"else\" branch.", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "retBranchAdd" + ], + "repairPatterns": [ + "singleLine" + ], + "repairTools": [ + "rtDynaMoth", + "rtElixir", + "rtJAID", + "rtNopol" + ], + "revisionId": "a5589b39e985e64861bd920aa7b13ab32c215b06" + }, + { + "bugId": 49, + "changedFiles": { + "org/apache/commons/lang/math/Fraction.java": { + "inserts": [ + [ + 466 + ] + ] + } + }, + "diff": "--- a/src/java/org/apache/commons/lang/math/Fraction.java\n+++ b/src/java/org/apache/commons/lang/math/Fraction.java\n@@ -463,6 +463,9 @@ public double doubleValue() {\n * @return a new reduced fraction instance, or this if no simplification possible\n */\n public Fraction reduce() {\n+ if (numerator == 0) {\n+ return equals(ZERO) ? this : ZERO;\n+ }\n int gcd = greatestCommonDivisor(Math.abs(numerator), denominator);\n if (gcd == 1) {\n return this;\n", + "failingTests": [ + { + "className": " org.apache.commons.lang.math.FractionTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<1> but was:<100>", + "methodName": "testReduce" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 3, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 3, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "condBranIfAdd", + "condBranIfElseAdd", + "mcAdd", + "retBranchAdd" + ], + "repairPatterns": [ + "condBlockOthersAdd", + "condBlockRetAdd" + ], + "repairTools": [], + "revisionId": "0ac772a4e3b07287c435fdc3c812f67277c85cc8" + }, + { + "bugId": 54, + "changedFiles": { + "org/apache/commons/lang/LocaleUtils.java": { + 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(numeric.charAt(0) == '-' && isDigits(numeric.substring(1)) || isDigits(numeric))) {\n try {\n return createLong(numeric);\n } catch (NumberFormatException nfe) {\n", + "failingTests": [ + { + "className": " org.apache.commons.lang.math.NumberUtilsTest", + "error": "java.lang.NumberFormatException", + "message": "1l is not a valid number.", + "methodName": "testLang300" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 1, + "methods": 1, + "sizeInLines": 2, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "condExpMod" + ], + "repairPatterns": [ + "expLogicMod" + ], + "repairTools": [ + "rtDynaMoth", + "rtElixir", + "rtNopol" + ], + "revisionId": "1fd45a4f68ea497dfbdf1a67b8b8805a4a9b1166" + }, + { + "bugId": 56, + "changedFiles": { + "org/apache/commons/lang/time/FastDateFormat.java": { + "changes": [ + [ + 140 + ], + [ + 144 + ] + ], + "inserts": [ + [ + -1 + ] + ] + } + }, + "diff": "--- a/src/java/org/apache/commons/lang/time/FastDateFormat.java\n+++ b/src/java/org/apache/commons/lang/time/FastDateFormat.java\n@@ -1,152 +1,152 @@\n /*\n * Licensed to the Apache Software Foundation (ASF) under one or more\n * contributor license agreements. See the NOTICE file distributed with\n * this work for additional information regarding copyright ownership.\n * The ASF licenses this file to You under the Apache License, Version 2.0\n * (the \"License\"); you may not use this file except in compliance with\n * the License. You may obtain a copy of the License at\n * \n * http://www.apache.org/licenses/LICENSE-2.0\n * \n * Unless required by applicable law or agreed to in writing, software\n * distributed under the License is distributed on an \"AS IS\" BASIS,\n * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n * See the License for the specific language governing permissions and\n * limitations under the License.\n */\n package org.apache.commons.lang.time;\n \n import java.io.IOException;\n import java.io.ObjectInputStream;\n \n import java.text.DateFormat;\n import java.text.DateFormatSymbols;\n import java.text.FieldPosition;\n import java.text.Format;\n import java.text.ParsePosition;\n import java.text.SimpleDateFormat;\n import java.util.ArrayList;\n import java.util.Calendar;\n import java.util.Date;\n import java.util.GregorianCalendar;\n import java.util.HashMap;\n import java.util.List;\n import java.util.Locale;\n import java.util.Map;\n import java.util.TimeZone;\n \n import org.apache.commons.lang.Validate;\n \n /**\n *

FastDateFormat is a fast and thread-safe version of\n * {@link java.text.SimpleDateFormat}.

\n * \n *

This class can be used as a direct replacement to\n * SimpleDateFormat in most formatting situations.\n * This class is especially useful in multi-threaded server environments.\n * SimpleDateFormat is not thread-safe in any JDK version,\n * nor will it be as Sun have closed the bug/RFE.\n *

\n *\n *

Only formatting is supported, but all patterns are compatible with\n * SimpleDateFormat (except time zones - see below).

\n *\n *

Java 1.4 introduced a new pattern letter, 'Z', to represent\n * time zones in RFC822 format (eg. +0800 or -1100).\n * This pattern letter can be used here (on all JDK versions).

\n *\n *

In addition, the pattern 'ZZ' has been made to represent\n * ISO8601 full format time zones (eg. +08:00 or -11:00).\n * This introduces a minor incompatibility with Java 1.4, but at a gain of\n * useful functionality.

\n *\n * @author TeaTrove project\n * @author Brian S O'Neill\n * @author Sean Schofield\n * @author Gary Gregory\n * @author Stephen Colebourne\n * @author Nikolay Metchev\n * @since 2.0\n * @version $Id$\n */\n public class FastDateFormat extends Format {\n // A lot of the speed in this class comes from caching, but some comes\n // from the special int to StringBuffer conversion.\n //\n // The following produces a padded 2 digit number:\n // buffer.append((char)(value / 10 + '0'));\n // buffer.append((char)(value % 10 + '0'));\n //\n // Note that the fastest append to StringBuffer is a single char (used here).\n // Note that Integer.toString() is not called, the conversion is simply\n // taking the value and adding (mathematically) the ASCII value for '0'.\n // So, don't change this code! It works and is very fast.\n \n /**\n * Required for serialization support.\n * \n * @see java.io.Serializable\n */\n private static final long serialVersionUID = 1L;\n \n /**\n * FULL locale dependent date or time style.\n */\n public static final int FULL = DateFormat.FULL;\n /**\n * LONG locale dependent date or time style.\n */\n public static final int LONG = DateFormat.LONG;\n /**\n * MEDIUM locale dependent date or time style.\n */\n public static final int MEDIUM = DateFormat.MEDIUM;\n /**\n * SHORT locale dependent date or time style.\n */\n public static final int SHORT = DateFormat.SHORT;\n \n private static String cDefaultPattern;\n \n private static Map cInstanceCache = new HashMap(7);\n private static Map cDateInstanceCache = new HashMap(7);\n private static Map cTimeInstanceCache = new HashMap(7);\n private static Map cDateTimeInstanceCache = new HashMap(7);\n private static Map cTimeZoneDisplayCache = new HashMap(7);\n \n /**\n * The pattern.\n */\n private final String mPattern;\n /**\n * The time zone.\n */\n private final TimeZone mTimeZone;\n /**\n * Whether the time zone overrides any on Calendars.\n */\n private final boolean mTimeZoneForced;\n /**\n * The locale.\n */\n private final Locale mLocale;\n /**\n * Whether the locale overrides the default.\n */\n private final boolean mLocaleForced;\n /**\n * The parsed rules.\n */\n- private Rule[] mRules;\n+ private transient Rule[] mRules;\n /**\n * The estimated maximum length.\n */\n- private int mMaxLengthEstimate;\n+ private transient int mMaxLengthEstimate;\n \n //-----------------------------------------------------------------------\n /**\n *

Gets a formatter instance using the default pattern in the\n * default locale.

\n * \n * @return a date/time formatter\n */\n@@ -1016,37 +1016,41 @@ public int hashCode() {\n public String toString() {\n return \"FastDateFormat[\" + mPattern + \"]\";\n }\n \n // Serializing\n //-----------------------------------------------------------------------\n+ private void readObject(ObjectInputStream in) throws IOException, ClassNotFoundException {\n+ in.defaultReadObject();\n+ init();\n+ }\n \n // Rules\n //-----------------------------------------------------------------------\n /**\n *

Inner class defining a rule.

\n */\n private interface Rule {\n /**\n * Returns the estimated lentgh of the result.\n * \n * @return the estimated length\n */\n int estimateLength();\n \n /**\n * Appends the value of the specified calendar to the output buffer based on the rule implementation.\n * \n * @param buffer the output buffer\n * @param calendar calendar to be appended\n */\n void appendTo(StringBuffer buffer, Calendar calendar);\n }\n \n /**\n *

Inner class defining a numeric rule.

\n */\n private interface NumberRule extends Rule {\n /**\n * Appends the specified value to the output buffer based on the rule implementation.\n * \n * @param buffer the output buffer\n", + "failingTests": [ + { + "className": " org.apache.commons.lang.time.FastDateFormatTest", + "error": "org.apache.commons.lang.SerializationException", + "message": "java.io.NotSerializableException: org.apache.commons.lang.time.FastDateFormat$PaddedNumberField", + "methodName": "testLang303" + } + ], + "metrics": { + "chunks": 3, + "classes": 1, + "files": 1, + "linesAdd": 4, + "linesMod": 2, + "linesRem": 0, + "methods": 1, + "sizeInLines": 6, + "spreadAllLines": 880, + "spreadCodeOnly": 425 + }, + "observations": "Changes types modifiers and overrides method related to Serialization.", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "mcAdd", + "mdAdd", + "mdOverride", + "varModChange" + ], + "repairPatterns": [ + "missComp", + "notClassified" + ], + "repairTools": [], + "revisionId": "672e3a8ead2970181c32cf5fc70a3ea3d020c1fc" + }, + { + "bugId": 64, + "changedFiles": { + "org/apache/commons/lang/enums/ValuedEnum.java": { + "inserts": [ + [ + 183 + ], + [ + -1 + ] + ] + } + }, + "diff": "--- a/src/java/org/apache/commons/lang/enums/ValuedEnum.java\n+++ b/src/java/org/apache/commons/lang/enums/ValuedEnum.java\n@@ -180,6 +180,16 @@ public final int getValue() {\n * @throws NullPointerException if other is null\n */\n public int compareTo(Object other) {\n+ if (other == this) {\n+ return 0;\n+ }\n+ if (other.getClass() != this.getClass()) {\n+ if (other.getClass().getName().equals(this.getClass().getName())) {\n+ return iValue - getValueInOtherClassLoader(other);\n+ }\n+ throw new ClassCastException(\n+ \"Different enum class '\" + ClassUtils.getShortClassName(other.getClass()) + \"'\");\n+ }\n return iValue - ((ValuedEnum) other).iValue;\n }\n \n@@ -189,9 +199,20 @@ public int compareTo(Object other) {\n * @param other the object to determine the value for\n * @return the value\n */\n+ private int getValueInOtherClassLoader(Object other) {\n+ try {\n+ Method mth = other.getClass().getMethod(\"getValue\", null);\n+ Integer value = (Integer) mth.invoke(other, null);\n+ return value.intValue();\n+ } catch (NoSuchMethodException e) {\n // ignore - should never happen\n+ } catch (IllegalAccessException e) {\n // ignore - should never happen\n+ } catch (InvocationTargetException e) {\n // ignore - should never happen\n+ }\n+ throw new IllegalStateException(\"This should not happen\");\n+ }\n \n /**\n *

Human readable description of this Enum item.

\n", + "failingTests": [ + { + "className": " org.apache.commons.lang.enums.ValuedEnumTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testCompareTo_otherEnumType" + } + ], + "metrics": { + "chunks": 5, + "classes": 1, + "files": 1, + "linesAdd": 21, + "linesMod": 0, + "linesRem": 0, + "methods": 2, + "sizeInLines": 21, + "spreadAllLines": 12, + "spreadCodeOnly": 2 + }, + "observations": "", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "assignAdd", + "condBranIfAdd", + "exThrowsAdd", + "exTryCatchAdd", + "mcAdd", + "mdAdd", + "objInstAdd", + "retBranchAdd", + "varAdd" + ], + "repairPatterns": [ + "condBlockExcAdd", + "condBlockOthersAdd", + "condBlockRetAdd", + "missComp" + ], + "repairTools": [], + "revisionId": "8de71ae52958ae70fe651b7327319c9beecd9b84" + }, + { + "bugId": 55, + "changedFiles": { + "org/apache/commons/lang/time/StopWatch.java": { + "inserts": [ + [ + 118 + ], + [ + 119 + ] + ] + } + }, + "diff": "--- a/src/java/org/apache/commons/lang/time/StopWatch.java\n+++ b/src/java/org/apache/commons/lang/time/StopWatch.java\n@@ -115,7 +115,9 @@ public void stop() {\n if(this.runningState != STATE_RUNNING && this.runningState != STATE_SUSPENDED) {\n throw new IllegalStateException(\"Stopwatch is not running. \");\n }\n+ if(this.runningState == STATE_RUNNING) {\n stopTime = System.currentTimeMillis();\n+ }\n this.runningState = STATE_STOPPED;\n }\n \n", + "failingTests": [ + { + "className": " org.apache.commons.lang.time.StopWatchTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testLang315" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 2, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 2, + "spreadAllLines": 1, + "spreadCodeOnly": 1 + }, + "observations": "", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "condBranIfAdd" + ], + "repairPatterns": [ + "wrapsIf" + ], + "repairTools": [ + "rtDynaMoth", + "rtJAID" + ], + "revisionId": "3ef8a796b5ddf87e3e9afec9ba94aac62681b394" + }, + { + "bugId": 59, + "changedFiles": { + "org/apache/commons/lang/text/StrBuilder.java": { + "changes": [ + [ + 884 + ] + ] + } + }, + "diff": "--- a/src/java/org/apache/commons/lang/text/StrBuilder.java\n+++ b/src/java/org/apache/commons/lang/text/StrBuilder.java\n@@ -881,7 +881,7 @@ public StrBuilder appendFixedWidthPadRight(Object obj, int width, char padChar)\n String str = (obj == null ? getNullText() : obj.toString());\n int strLen = str.length();\n if (strLen >= width) {\n- str.getChars(0, strLen, buffer, size);\n+ str.getChars(0, width, buffer, size);\n } else {\n int padLen = width - strLen;\n str.getChars(0, strLen, buffer, size);\n", + "failingTests": [ + { + "className": " org.apache.commons.lang.text.StrBuilderAppendInsertTest", + "error": "java.lang.ArrayIndexOutOfBoundsException", + "message": "", + "methodName": "testLang299" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "mcParValChange", + "varReplVar" + ], + "repairPatterns": [ + "singleLine", + "wrongComp", + "wrongVarRef" + ], + "repairTools": [ + "rtElixir", + "rtssFix" + ], + "revisionId": "c04cd2337786ce7d54ed1fb757192fb8bc8c5e41" + }, + { + "bugId": 62, + "changedFiles": { + "org/apache/commons/lang/Entities.java": { + "inserts": [ + [ + 850 + ], + [ + 920 + ], + [ + 925 + ], + [ + 926 + ] + ] + } + }, + "diff": "--- a/src/java/org/apache/commons/lang/Entities.java\n+++ b/src/java/org/apache/commons/lang/Entities.java\n@@ -847,6 +847,9 @@ public String unescape(String str) {\n } else {\n entityValue = Integer.parseInt(entityName.substring(1));\n }\n+ if (entityValue > 0xFFFF) {\n+ entityValue = -1;\n+ }\n } catch (NumberFormatException ex) {\n entityValue = -1;\n }\n@@ -917,12 +920,17 @@ public void unescape(Writer writer, String string) throws IOException {\n case 'X' :\n case 'x' : {\n entityValue = Integer.parseInt(entityContent.substring(2), 16);\n+ break;\n }\n default : {\n entityValue = Integer.parseInt(entityContent.substring(1), 10);\n }\n }\n+ if (entityValue > 0xFFFF) {\n+ entityValue = -1;\n+ }\n } catch (NumberFormatException e) {\n+ entityValue = -1;\n }\n }\n } else { //escaped value content is an entity name\n", + "failingTests": [ + { + "className": " org.apache.commons.lang.EntitiesTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected:<[�]> but was:<[慎]>", + "methodName": "testNumberOverflow" + } + ], + "metrics": { + "chunks": 4, + "classes": 1, + "files": 1, + "linesAdd": 8, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 8, + "spreadAllLines": 76, + "spreadCodeOnly": 61 + }, + "observations": "Added a \"break\" in \"case\" branch.", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "assignAdd", + "condBranIfAdd" + ], + "repairPatterns": [ + "condBlockOthersAdd", + "copyPaste", + "missComp" + ], + "repairTools": [], + "revisionId": "1313a65c11dea54f1baf492d4185fb2d673b6716" + }, + { + "bugId": 60, + "changedFiles": { + "org/apache/commons/lang/text/StrBuilder.java": { + "changes": [ + [ + 1673 + ], + [ + 1730 + ] + ] + } + }, + "diff": "--- a/src/java/org/apache/commons/lang/text/StrBuilder.java\n+++ b/src/java/org/apache/commons/lang/text/StrBuilder.java\n@@ -1670,7 +1670,7 @@ public String midString(int index, int length) {\n */\n public boolean contains(char ch) {\n char[] thisBuf = buffer;\n- for (int i = 0; i < thisBuf.length; i++) {\n+ for (int i = 0; i < this.size; i++) {\n if (thisBuf[i] == ch) {\n return true;\n }\n@@ -1727,7 +1727,7 @@ public int indexOf(char ch, int startIndex) {\n return -1;\n }\n char[] thisBuf = buffer;\n- for (int i = startIndex; i < thisBuf.length; i++) {\n+ for (int i = startIndex; i < size; i++) {\n if (thisBuf[i] == ch) {\n return i;\n }\n", + "failingTests": [ + { + "className": " org.apache.commons.lang.text.StrBuilderTest", + "error": "junit.framework.AssertionFailedError", + "message": "The contains(char) method is looking beyond the end of the string", + "methodName": "testLang295" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 2, + "linesRem": 0, + "methods": 2, + "sizeInLines": 2, + "spreadAllLines": 56, + "spreadCodeOnly": 21 + }, + "observations": "", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "loopCondChange", + "varReplVar" + ], + "repairPatterns": [ + "expLogicMod", + "wrongVarRef" + ], + "repairTools": [], + "revisionId": "a8203b65261110c4a30ff69fe0da7a2390d82757" + }, + { + "bugId": 61, + "changedFiles": { + "org/apache/commons/lang/text/StrBuilder.java": { + "changes": [ + [ + 1776 + ] + ] + } + }, + "diff": "--- a/src/java/org/apache/commons/lang/text/StrBuilder.java\n+++ b/src/java/org/apache/commons/lang/text/StrBuilder.java\n@@ -1773,7 +1773,7 @@ public int indexOf(String str, int startIndex) {\n return -1;\n }\n char[] thisBuf = buffer;\n- int len = thisBuf.length - strLen;\n+ int len = size - strLen + 1;\n outer:\n for (int i = startIndex; i < len; i++) {\n for (int j = 0; j < strLen; j++) {\n", + "failingTests": [ + { + "className": " org.apache.commons.lang.text.StrBuilderTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<-1> but was:<6>", + "methodName": "testIndexOfLang294" + }, + { + "className": " org.apache.commons.lang.text.StrBuilderTest", + "error": "java.lang.ArrayIndexOutOfBoundsException", + "message": "", + "methodName": "testLang294" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Changes/fix computing of a variable.", + "program": "commons-lang", + "project": "Lang", + "repairActions": [ + "assignExpChange", + "varReplVar" + ], + "repairPatterns": [ + "expArithMod", + "singleLine", + "wrongComp", + "wrongVarRef" + ], + "repairTools": [ + "rtJAID" + ], + "revisionId": "88c76d207f642831ca899e144159424aaa60cf8e" + }, + { + "bugId": 63, + "changedFiles": { + "org/apache/commons/lang/time/DurationFormatUtils.java": { + "changes": [ + [ + 306 + ] + ], + "deletes": [ + [ + 318 + ], + [ + 319 + ], + [ + 320 + ], + [ + 321 + ], + [ + 322 + ], + [ + 323 + ], + [ + 324 + ], + [ + 431 + ], + [ + 432 + ], + [ + 433 + ], + [ + 434 + ], + [ + 435 + ], + [ + 436 + ], + [ + 437 + ], + [ + 438 + ], + [ + 439 + ], + [ + 440 + ], + [ + 441 + ], + [ + 442 + ] + ], + "inserts": [ + [ + 307, + 308, + 309, + 310, + 311, + 312, + 313 + ] + ] + } + }, + "diff": "--- a/src/java/org/apache/commons/lang/time/DurationFormatUtils.java\n+++ b/src/java/org/apache/commons/lang/time/DurationFormatUtils.java\n@@ -303,25 +303,20 @@ public static String formatPeriod(long startMillis, long endMillis, String forma\n days -= 1;\n }\n while (days < 0) {\n- days += 31;\n+ end.add(Calendar.MONTH, -1);\n+ days += end.getActualMaximum(Calendar.DAY_OF_MONTH);\n //days += 31; // TODO: Need tests to show this is bad and the new code is good.\n // HEN: It's a tricky subject. Jan 15th to March 10th. If I count days-first it is \n // 1 month and 26 days, but if I count month-first then it is 1 month and 23 days.\n // Also it's contextual - if asked for no M in the format then I should probably \n // be doing no calculating here.\n months -= 1;\n+ end.add(Calendar.MONTH, 1);\n }\n while (months < 0) {\n months += 12;\n years -= 1;\n }\n- milliseconds -= reduceAndCorrect(start, end, Calendar.MILLISECOND, milliseconds);\n- seconds -= reduceAndCorrect(start, end, Calendar.SECOND, seconds);\n- minutes -= reduceAndCorrect(start, end, Calendar.MINUTE, minutes);\n- hours -= reduceAndCorrect(start, end, Calendar.HOUR_OF_DAY, hours);\n- days -= reduceAndCorrect(start, end, Calendar.DAY_OF_MONTH, days);\n- months -= reduceAndCorrect(start, end, Calendar.MONTH, months);\n- years -= reduceAndCorrect(start, end, Calendar.YEAR, years);\n \n // This next block of code adds in values that \n // aren't requested. 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ArithmeticException(\"Calendar value too large for accurate calculations\");\n }\n \n+ if (field == Calendar.MILLISECOND) {\n+ return;\n+ }\n \n // ----------------- Fix for LANG-59 ---------------------- START ---------------\n // see http://issues.apache.org/jira/browse/LANG-59\n@@ -628,14 +631,39 @@ private static void modify(Calendar val, int field, boolean round) {\n // Manually truncate milliseconds, seconds and minutes, rather than using\n // Calendar methods.\n \n+ Date date = val.getTime();\n+ long time = date.getTime();\n+ boolean done = false;\n \n // truncate milliseconds\n+ int millisecs = val.get(Calendar.MILLISECOND);\n+ if (!round || millisecs < 500) {\n+ time = time - millisecs;\n+ if (field == Calendar.SECOND) {\n+ done = true;\n+ }\n+ }\n \n // truncate seconds\n+ int seconds = val.get(Calendar.SECOND);\n+ if (!done && (!round || seconds < 30)) {\n+ time = time - (seconds * 1000L);\n+ if (field == Calendar.MINUTE) {\n+ done = true;\n+ }\n+ }\n \n // truncate minutes\n+ int minutes = val.get(Calendar.MINUTE);\n+ if (!done && (!round || minutes < 30)) {\n+ time = time - (minutes * 60000L);\n+ }\n \n // reset time\n+ if (date.getTime() != time) {\n+ date.setTime(time);\n+ val.setTime(date);\n+ }\n // ----------------- Fix for LANG-59 ----------------------- END ----------------\n \n boolean roundUp = false;\n@@ -706,7 +734,9 @@ private static void modify(Calendar val, int field, boolean round) {\n roundUp = offset > ((max - min) / 2);\n }\n //We need to remove this field\n+ if (offset != 0) {\n val.set(fields[i][0], val.get(fields[i][0]) - offset);\n+ }\n }\n throw new IllegalArgumentException(\"The field \" + field + \" is not supported\");\n \n", + "failingTests": [ + { + "className": " org.apache.commons.lang.time.DateUtilsTest", + "error": "junit.framework.AssertionFailedError", + "message": "Truncate Calendar.SECOND expected: but was:", + "methodName": "testTruncateLang59" + } + ], + "metrics": { + "chunks": 8, + "classes": 1, + "files": 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public double getNumericalMean() {\n- return (double) (getSampleSize() * getNumberOfSuccesses()) / (double) getPopulationSize();\n+ return getSampleSize() * (getNumberOfSuccesses() / (double) getPopulationSize());\n }\n \n /**\n", + "failingTests": [ + { + "className": " org.apache.commons.math3.distribution.HypergeometricDistributionTest", + "error": "junit.framework.AssertionFailedError", + "message": "sample=-50", + "methodName": "testMath1021" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Apply a casting to returned value of an expression.", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "retExpChange" + ], + "repairPatterns": [ + "expArithMod", + "singleLine" + ], + "repairTools": [ + "rtCardumen", + "rtDeepRepair", + "rtDynaMoth", + "rtElixir", + "rtGPFL", + "rtGenProg", + "rtKali", + "rtNopol" + ], + "revisionId": "c0b655ace5665c0cd32e3f5e5b46edad4d223125" + }, + { + "bugId": 1, + "changedFiles": { + "org/apache/commons/math3/fraction/BigFraction.java": { + "inserts": [ + [ + 304, + 305, + 306 + ] + ] + }, + "org/apache/commons/math3/fraction/Fraction.java": { + "inserts": [ + [ + 213, + 214, + 215 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math3/fraction/BigFraction.java\n+++ b/src/main/java/org/apache/commons/math3/fraction/BigFraction.java\n@@ -303,6 +303,9 @@ private BigFraction(final double value, final double epsilon,\n if ((p2 > overflow) || (q2 > overflow)) {\n // in maxDenominator mode, if the last fraction was very close to the actual value\n // q2 may overflow in the next iteration; in this case return the last one.\n+ if (epsilon == 0.0 && FastMath.abs(q1) < maxDenominator) {\n+ break;\n+ }\n throw new FractionConversionException(value, p2, q2);\n }\n \n--- a/src/main/java/org/apache/commons/math3/fraction/Fraction.java\n+++ b/src/main/java/org/apache/commons/math3/fraction/Fraction.java\n@@ -212,6 +212,9 @@ private Fraction(double value, double epsilon, int maxDenominator, int maxIterat\n if ((FastMath.abs(p2) > overflow) || (FastMath.abs(q2) > overflow)) {\n // in maxDenominator mode, if the last fraction was very close to the actual value\n // q2 may overflow in the next iteration; in this case return the last one.\n+ if (epsilon == 0.0 && FastMath.abs(q1) < maxDenominator) {\n+ break;\n+ }\n throw new FractionConversionException(value, p2, q2);\n }\n \n", + "failingTests": [ + { + "className": " org.apache.commons.math3.fraction.BigFractionTest", + "error": "org.apache.commons.math3.fraction.FractionConversionException", + "message": "illegal state: Overflow trying to convert 0.5 to fraction (2,499,999,794/4,999,999,587)", + "methodName": "testDigitLimitConstructor" + }, + { + "className": " 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a/src/main/java/org/apache/commons/math3/util/MathArrays.java\n+++ b/src/main/java/org/apache/commons/math3/util/MathArrays.java\n@@ -818,7 +818,10 @@ public static double linearCombination(final double[] a, final double[] b)\n throw new DimensionMismatchException(len, b.length);\n }\n \n+ if (len == 1) {\n // Revert to scalar multiplication.\n+ return a[0] * b[0];\n+ }\n \n final double[] prodHigh = new double[len];\n double prodLowSum = 0;\n", + "failingTests": [ + { + "className": " org.apache.commons.math3.util.MathArraysTest", + "error": "java.lang.ArrayIndexOutOfBoundsException", + "message": "1", + "methodName": "testLinearCombinationWithSingleElementArray" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 3, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 3, + "spreadAllLines": 1, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "condBranIfAdd", + 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NotStrictlyPositiveException {\n+ public Object[] sample(int sampleSize) throws NotStrictlyPositiveException {\n if (sampleSize <= 0) {\n throw new NotStrictlyPositiveException(LocalizedFormats.NUMBER_OF_SAMPLES,\n sampleSize);\n }\n \n- final T[]out = (T[]) java.lang.reflect.Array.newInstance(singletons.get(0).getClass(), sampleSize);\n+ final Object[] out = new Object[sampleSize];\n \n for (int i = 0; i < sampleSize; i++) {\n out[i] = sample();\n", + "failingTests": [ + { + "className": " org.apache.commons.math3.distribution.DiscreteRealDistributionTest", + "error": "java.lang.ArrayStoreException", + "message": "org.apache.commons.math3.distribution.DiscreteRealDistributionTest$2", + "methodName": "testIssue942" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 2, + "linesRem": 0, + "methods": 1, + "sizeInLines": 2, + "spreadAllLines": 5, + "spreadCodeOnly": 4 + }, + "observations": "Ajust the object initialization to reflect type 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FastMath.pow(covarianceMatrixDeterminant, -0.5) *\n getExponentTerm(vals);\n }\n", + "failingTests": [ + { + "className": " org.apache.commons.math3.distribution.MultivariateNormalDistributionTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<0.13915687747739694> but was:<0.348814563694205>", + "methodName": "testUnivariateDistribution" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "mcParValChange", + "retExpChange" + ], + "repairPatterns": [ + "expArithMod", + "singleLine" + ], + "repairTools": [], + "revisionId": "aa2bd1d0656b0001192aa2b2ef779cfd1f3b7e4d" + }, + { + "bugId": 6, + "changedFiles": { + "org/apache/commons/math3/optim/BaseOptimizer.java": { + "changes": [ + [ + 51 + ] + ] + }, + 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+ ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math3/optim/BaseOptimizer.java\n+++ b/src/main/java/org/apache/commons/math3/optim/BaseOptimizer.java\n@@ -48,7 +48,7 @@ protected BaseOptimizer(ConvergenceChecker checker) {\n this.checker = checker;\n \n evaluations = new Incrementor(0, new MaxEvalCallback());\n- iterations = new Incrementor(0, new MaxIterCallback());\n+ iterations = new Incrementor(Integer.MAX_VALUE, new MaxIterCallback());\n }\n \n /**\n--- a/src/main/java/org/apache/commons/math3/optim/nonlinear/scalar/gradient/NonLinearConjugateGradientOptimizer.java\n+++ b/src/main/java/org/apache/commons/math3/optim/nonlinear/scalar/gradient/NonLinearConjugateGradientOptimizer.java\n@@ -211,16 +211,15 @@ protected PointValuePair doOptimize() {\n }\n \n PointValuePair current = null;\n- int iter = 0;\n int maxEval = getMaxEvaluations();\n while (true) {\n- ++iter;\n+ incrementIterationCount();\n \n final double objective = computeObjectiveValue(point);\n PointValuePair previous = current;\n current = new PointValuePair(point, objective);\n if (previous != null) {\n- if (checker.converged(iter, previous, current)) {\n+ if (checker.converged(getIterations(), previous, current)) {\n // We have found an optimum.\n return current;\n }\n@@ -274,7 +273,7 @@ protected PointValuePair doOptimize() {\n steepestDescent = newSteepestDescent;\n \n // Compute conjugate search direction.\n- if (iter % n == 0 ||\n+ if (getIterations() % n == 0 ||\n beta < 0) {\n // Break conjugation: reset search direction.\n searchDirection = steepestDescent.clone();\n--- a/src/main/java/org/apache/commons/math3/optim/nonlinear/scalar/noderiv/CMAESOptimizer.java\n+++ b/src/main/java/org/apache/commons/math3/optim/nonlinear/scalar/noderiv/CMAESOptimizer.java\n@@ -385,6 +385,7 @@ protected PointValuePair doOptimize() {\n \n generationLoop:\n for (iterations = 1; iterations <= maxIterations; iterations++) {\n+ incrementIterationCount();\n \n // Generate and evaluate lambda offspring\n final RealMatrix arz = randn1(dimension, lambda);\n--- a/src/main/java/org/apache/commons/math3/optim/nonlinear/scalar/noderiv/PowellOptimizer.java\n+++ b/src/main/java/org/apache/commons/math3/optim/nonlinear/scalar/noderiv/PowellOptimizer.java\n@@ -188,9 +188,8 @@ protected PointValuePair doOptimize() {\n double[] x = guess;\n double fVal = computeObjectiveValue(x);\n double[] x1 = x.clone();\n- int iter = 0;\n while (true) {\n- ++iter;\n+ incrementIterationCount();\n \n double fX = fVal;\n double fX2 = 0;\n@@ -224,7 +223,7 @@ protected PointValuePair doOptimize() {\n final PointValuePair current = new PointValuePair(x, fVal);\n if (!stop) { // User-defined stopping criteria.\n if (checker != null) {\n- stop = checker.converged(iter, previous, current);\n+ stop = checker.converged(getIterations(), previous, current);\n }\n }\n if (stop) {\n--- a/src/main/java/org/apache/commons/math3/optim/nonlinear/scalar/noderiv/SimplexOptimizer.java\n+++ b/src/main/java/org/apache/commons/math3/optim/nonlinear/scalar/noderiv/SimplexOptimizer.java\n@@ -155,7 +155,7 @@ public int compare(final PointValuePair o1,\n int iteration = 0;\n final ConvergenceChecker checker = getConvergenceChecker();\n while (true) {\n- if (iteration > 0) {\n+ if (getIterations() > 0) {\n boolean converged = true;\n for (int i = 0; i < simplex.getSize(); i++) {\n PointValuePair prev = previous[i];\n@@ -172,7 +172,7 @@ public int compare(final PointValuePair o1,\n previous = simplex.getPoints();\n simplex.iterate(evalFunc, comparator);\n \n-\t\t\t++iteration;\n+ incrementIterationCount();\n }\n }\n \n--- a/src/main/java/org/apache/commons/math3/optim/nonlinear/vector/jacobian/GaussNewtonOptimizer.java\n+++ b/src/main/java/org/apache/commons/math3/optim/nonlinear/vector/jacobian/GaussNewtonOptimizer.java\n@@ -103,9 +103,8 @@ public PointVectorValuePair doOptimize() {\n \n // iterate until convergence is reached\n PointVectorValuePair current = null;\n- int iter = 0;\n for (boolean converged = false; !converged;) {\n- ++iter;\n+ incrementIterationCount();\n \n // evaluate the objective function and its jacobian\n PointVectorValuePair previous = current;\n@@ -157,7 +156,7 @@ public PointVectorValuePair doOptimize() {\n \n // Check convergence.\n if (previous != null) {\n- converged = checker.converged(iter, previous, current);\n+ converged = checker.converged(getIterations(), previous, current);\n if (converged) {\n setCost(computeCost(currentResiduals));\n return current;\n--- a/src/main/java/org/apache/commons/math3/optim/nonlinear/vector/jacobian/LevenbergMarquardtOptimizer.java\n+++ b/src/main/java/org/apache/commons/math3/optim/nonlinear/vector/jacobian/LevenbergMarquardtOptimizer.java\n@@ -319,10 +319,10 @@ protected PointVectorValuePair doOptimize() {\n // Outer loop.\n lmPar = 0;\n boolean firstIteration = true;\n- int iter = 0;\n final ConvergenceChecker checker = getConvergenceChecker();\n while (true) {\n- ++iter;\n+ incrementIterationCount();\n+\n final PointVectorValuePair previous = current;\n \n // QR decomposition of the jacobian matrix\n@@ -486,7 +486,7 @@ protected PointVectorValuePair doOptimize() {\n // tests for convergence.\n if (checker != null) {\n // we use the vectorial convergence checker\n- if (checker.converged(iter, previous, current)) {\n+ if (checker.converged(getIterations(), previous, current)) {\n setCost(currentCost);\n return current;\n }\n", + "failingTests": [ + { + "className": " org.apache.commons.math3.optim.nonlinear.scalar.gradient.NonLinearConjugateGradientOptimizerTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testTrivial" + }, + { + "className": " org.apache.commons.math3.optim.nonlinear.scalar.noderiv.CMAESOptimizerTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testConstrainedRosen" + }, + { + "className": " 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value to take special cases (+0/+0, +0/-0, -0/+0, -0/-0, +/-infinity) correctly\n+ result[resultOffset] = FastMath.atan2(y[yOffset], x[xOffset]);\n \n }\n \n", + "failingTests": [ + { + "className": " org.apache.commons.math3.analysis.differentiation.DerivativeStructureTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<0.0> but was:", + "methodName": "testAtan2SpecialCases" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 1, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignAdd", + "mcAdd" + ], + "repairPatterns": [ + "missComp", + "singleLine" + ], + "repairTools": [], + "revisionId": "7e2ffcc9034de41d7787f0b33b5670474f7a10de" + }, + { + "bugId": 7, + "changedFiles": { + "org/apache/commons/math3/ode/AbstractIntegrator.java": { + "changes": [ + [ + 346 + ], + [ + 347 + ], + [ + 363 + ] + ], + "deletes": [ + [ + 357 + ], + [ + 358 + ], + [ + 359 + ], + [ + 370 + ], + [ + 371 + ], + [ + 372 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math3/ode/AbstractIntegrator.java\n+++ b/src/main/java/org/apache/commons/math3/ode/AbstractIntegrator.java\n@@ -343,8 +343,10 @@ public int compare(EventState es0, EventState es1) {\n final double[] eventY = interpolator.getInterpolatedState().clone();\n \n // advance all event states to current time\n- currentEvent.stepAccepted(eventT, eventY);\n- isLastStep = currentEvent.stop();\n+ for (final EventState state : eventsStates) {\n+ state.stepAccepted(eventT, eventY);\n+ isLastStep = isLastStep || state.stop();\n+ }\n \n // handle the first part of the step, up to the event\n for (final StepHandler handler : stepHandlers) {\n@@ -354,22 +356,19 @@ public int compare(EventState es0, EventState es1) {\n if (isLastStep) {\n // the event asked to stop integration\n System.arraycopy(eventY, 0, y, 0, y.length);\n- for (final EventState remaining : occuringEvents) {\n- remaining.stepAccepted(eventT, eventY);\n- }\n return eventT;\n }\n \n- boolean needReset = currentEvent.reset(eventT, eventY);\n+ boolean needReset = false;\n+ for (final EventState state : eventsStates) {\n+ needReset = needReset || state.reset(eventT, eventY);\n+ }\n if (needReset) {\n // some event handler has triggered changes that\n // invalidate the derivatives, we need to recompute them\n System.arraycopy(eventY, 0, y, 0, y.length);\n computeDerivatives(eventT, y, yDot);\n resetOccurred = true;\n- for (final EventState remaining : occuringEvents) {\n- remaining.stepAccepted(eventT, eventY);\n- }\n return eventT;\n }\n \n", + "failingTests": [ + { + "className": " org.apache.commons.math3.ode.nonstiff.DormandPrince853IntegratorTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testEventsScheduling" + } + ], + "metrics": { + "chunks": 4, 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+16,7 @@\n */\n package org.apache.commons.math3.random;\n \n+import java.io.Serializable;\n \n import org.apache.commons.math3.exception.NotStrictlyPositiveException;\n import org.apache.commons.math3.util.FastMath;\n@@ -26,8 +27,10 @@\n * @since 2.0\n */\n public abstract class BitsStreamGenerator\n- implements RandomGenerator {\n+ implements RandomGenerator,\n+ Serializable {\n /** Serializable version identifier */\n+ private static final long serialVersionUID = 20130104L;\n /** Next gaussian. */\n private double nextGaussian;\n \n", + "failingTests": [ + { + "className": " org.apache.commons.math3.distribution.GammaDistributionTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<10.688186123440644> but was:<13.675503685260901>", + "methodName": "testDistributionClone" + }, + { + "className": " org.apache.commons.math3.distribution.LogNormalDistributionTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<23.951334711900845> 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"diff": "--- a/src/main/java/org/apache/commons/math3/geometry/euclidean/threed/Line.java\n+++ b/src/main/java/org/apache/commons/math3/geometry/euclidean/threed/Line.java\n@@ -84,7 +84,8 @@ public void reset(final Vector3D p1, final Vector3D p2) throws MathIllegalArgume\n * @return a new instance, with reversed direction\n */\n public Line revert() {\n- final Line reverted = new Line(zero, zero.subtract(direction));\n+ final Line reverted = new Line(this);\n+ reverted.direction = reverted.direction.negate();\n return reverted;\n }\n \n", + "failingTests": [ + { + "className": " org.apache.commons.math3.geometry.euclidean.threed.LineTest", + "error": "junit.framework.AssertionFailedError", + "message": "arrays first differed at element [0]; expected:<0.028581782127907646> but was:<0.028581782243293483>", + "methodName": "testRevert" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 1, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 2, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Replaced constructor by overloaded version. Changes object attribute value by direct assignment.", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignAdd", + "assignExpChange", + "mcAdd", + "objInstMod" + ], + "repairPatterns": [ + "initFix", + "wrongMethodRef" + ], + "repairTools": [], + "revisionId": "de98c0f0a566060ac143c39036f06a03f141dc52" + }, + { + "bugId": 4, + "changedFiles": { + "org/apache/commons/math3/geometry/euclidean/threed/SubLine.java": { + "inserts": [ + [ + 114, + 115, + 116 + ] + ] + }, + "org/apache/commons/math3/geometry/euclidean/twod/SubLine.java": { + "inserts": [ + [ + 118, + 119, + 120 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math3/geometry/euclidean/threed/SubLine.java\n+++ b/src/main/java/org/apache/commons/math3/geometry/euclidean/threed/SubLine.java\n@@ -111,6 +111,9 @@ public Vector3D intersection(final SubLine subLine, final boolean includeEndPoin\n \n // compute the intersection on infinite line\n Vector3D v1D = line.intersection(subLine.line);\n+ if (v1D == null) {\n+ return null;\n+ }\n \n // check location of point with respect to first sub-line\n Location loc1 = remainingRegion.checkPoint(line.toSubSpace(v1D));\n--- a/src/main/java/org/apache/commons/math3/geometry/euclidean/twod/SubLine.java\n+++ b/src/main/java/org/apache/commons/math3/geometry/euclidean/twod/SubLine.java\n@@ -115,6 +115,9 @@ public Vector2D intersection(final SubLine subLine, final boolean includeEndPoin\n \n // compute the intersection on infinite line\n Vector2D v2D = line1.intersection(line2);\n+ if (v2D == null) {\n+ return null;\n+ }\n \n // check location of point with respect to first sub-line\n Location loc1 = getRemainingRegion().checkPoint(line1.toSubSpace(v2D));\n", + "failingTests": [ + { + "className": " org.apache.commons.math3.geometry.euclidean.threed.SubLineTest", + "error": "java.lang.NullPointerException", + "message": "", + "methodName": "testIntersectionNotIntersecting" + }, + { + "className": " org.apache.commons.math3.geometry.euclidean.twod.SubLineTest", + "error": "java.lang.NullPointerException", + "message": "", + "methodName": "testIntersectionParallel" + } + ], + "metrics": { + "chunks": 2, + "classes": 2, + "files": 2, + "linesAdd": 6, + "linesMod": 0, + "linesRem": 0, + "methods": 2, + "sizeInLines": 6, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Almost a copy, the only difference is in involved variable.", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "condBranIfAdd", + "retBranchAdd" + ], + "repairPatterns": [ + "condBlockRetAdd", + "copyPaste", + "missNullCheckP" + ], + "repairTools": [ + "rtAcs", + "rtNopol" + ], + "revisionId": "277e61721f34be16a20da663fd597edf6b51939b" + }, + { + "bugId": 13, + "changedFiles": { + "org/apache/commons/math3/optimization/general/AbstractLeastSquaresOptimizer.java": { + "inserts": [ + [ + 562 + ], + [ + 564 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math3/optimization/general/AbstractLeastSquaresOptimizer.java\n+++ b/src/main/java/org/apache/commons/math3/optimization/general/AbstractLeastSquaresOptimizer.java\n@@ -559,7 +559,16 @@ protected void setUp() {\n * @return the square-root of the weight matrix.\n */\n private RealMatrix squareRoot(RealMatrix m) {\n+ if (m instanceof DiagonalMatrix) {\n+ final int dim = m.getRowDimension();\n+ final RealMatrix sqrtM = new DiagonalMatrix(dim);\n+ for (int i = 0; i < dim; i++) {\n+ sqrtM.setEntry(i, i, FastMath.sqrt(m.getEntry(i, i)));\n+ }\n+ return sqrtM;\n+ } else {\n final EigenDecomposition dec = new EigenDecomposition(m);\n return dec.getSquareRoot();\n+ }\n }\n }\n", + "failingTests": [ + { + "className": " org.apache.commons.math3.optimization.fitting.PolynomialFitterTest", + "error": "java.lang.OutOfMemoryError", + "message": "Java heap space", + "methodName": "testLargeSample" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 9, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 9, + "spreadAllLines": 2, + "spreadCodeOnly": 2 + }, + "observations": "Contains the patch of Math-13", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignAdd", + "condBranIfElseAdd", + "loopAdd", + "mcAdd", + "objInstAdd", + "retBranchAdd", + "varAdd" + ], + "repairPatterns": [ + "missComp", + "wrapsIfElse" + ], + "repairTools": [], + "revisionId": "8079ea5b8d1366445da532906e43afa9291473cf" + }, + { + "bugId": 14, + "changedFiles": { + "org/apache/commons/math3/optim/nonlinear/vector/Weight.java": { + "changes": [ + [ + 43 + ] + ], + "deletes": [ + [ + 44 + ], + [ + 45 + ], + [ + 46 + ] + ] + }, + "org/apache/commons/math3/optim/nonlinear/vector/jacobian/AbstractLeastSquaresOptimizer.java": { + "inserts": [ + [ + 267 + ], + [ + 269 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math3/optim/nonlinear/vector/Weight.java\n+++ b/src/main/java/org/apache/commons/math3/optim/nonlinear/vector/Weight.java\n@@ -40,10 +40,7 @@\n */\n public Weight(double[] weight) {\n final int dim = weight.length;\n- weightMatrix = org.apache.commons.math3.linear.MatrixUtils.createRealMatrix(dim, dim);\n- for (int i = 0; i < dim; i++) {\n- weightMatrix.setEntry(i, i, weight[i]);\n- }\n+ weightMatrix = new DiagonalMatrix(weight);\n }\n \n /**\n--- a/src/main/java/org/apache/commons/math3/optim/nonlinear/vector/jacobian/AbstractLeastSquaresOptimizer.java\n+++ b/src/main/java/org/apache/commons/math3/optim/nonlinear/vector/jacobian/AbstractLeastSquaresOptimizer.java\n@@ -264,7 +264,16 @@ private void parseOptimizationData(OptimizationData... optData) {\n * @return the square-root of the weight matrix.\n */\n private RealMatrix squareRoot(RealMatrix m) {\n+ if (m instanceof DiagonalMatrix) {\n+ final int dim = m.getRowDimension();\n+ final RealMatrix sqrtM = new DiagonalMatrix(dim);\n+ for (int i = 0; i < dim; i++) {\n+ sqrtM.setEntry(i, i, FastMath.sqrt(m.getEntry(i, i)));\n+ }\n+ return sqrtM;\n+ } else {\n final EigenDecomposition dec = new EigenDecomposition(m);\n return dec.getSquareRoot();\n+ }\n }\n }\n", + "failingTests": [ + { + "className": " org.apache.commons.math3.fitting.PolynomialFitterTest", + "error": "java.lang.OutOfMemoryError", + "message": "Java heap space", + "methodName": "testLargeSample" + } + ], + "metrics": { + "chunks": 3, + "classes": 2, + "files": 2, + "linesAdd": 9, + "linesMod": 1, + "linesRem": 3, + "methods": 2, + "sizeInLines": 13, + "spreadAllLines": 2, + "spreadCodeOnly": 2 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignAdd", + "assignRem", + "condBranIfElseAdd", + "loopAdd", + "loopRem", + "mcAdd", + "mcRem", + "objInstAdd", + "retBranchAdd", + "varAdd" + ], + "repairPatterns": [ + "blockRemove", + "missComp", + "wrapsIfElse" + ], + "repairTools": [], + "revisionId": "a6b2e992e17cee0d4cb5a2da8242a20b8e5a8fc3" + }, + { + "bugId": 15, + "changedFiles": { + "org/apache/commons/math3/util/FastMath.java": { + "changes": [ + [ + 1541 + ] + ], + "inserts": [ + [ + -1 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math3/util/FastMath.java\n+++ b/src/main/java/org/apache/commons/math3/util/FastMath.java\n@@ -310,6 +310,7 @@\n /** 2^52 - double numbers this large must be integral (no fraction) or NaN or Infinite */\n private static final double TWO_POWER_52 = 4503599627370496.0;\n /** 2^53 - double numbers this large must be even. */\n+ private static final double TWO_POWER_53 = 2 * TWO_POWER_52;\n \n /** Constant: {@value}. */\n private static final double F_1_3 = 1d / 3d;\n@@ -1538,7 +1539,7 @@ public static double pow(double x, double y) {\n /* Handle special case x<0 */\n if (x < 0) {\n // y is an even integer in this case\n- if (y >= TWO_POWER_52 || y <= -TWO_POWER_52) {\n+ if (y >= TWO_POWER_53 || y <= -TWO_POWER_53) {\n return pow(-x, y);\n }\n \n", + "failingTests": [ + { + "className": " org.apache.commons.math3.util.FastMathTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<-1.0> but was:<1.0>", + "methodName": "testMath904" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 1, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 2, + "spreadAllLines": 1228, + "spreadCodeOnly": 742 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignAdd", + "condExpMod", + "varAdd" + ], + "repairPatterns": [ + "expLogicMod", + "initFix" + ], + "repairTools": [], + "revisionId": "b221a7342856a2a548f5d9817055defc0ec4dea6" + }, + { + "bugId": 17, + "changedFiles": { + "org/apache/commons/math3/dfp/Dfp.java": { + "inserts": [ + [ + 1603 + ], + [ + 1604 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math3/dfp/Dfp.java\n+++ b/src/main/java/org/apache/commons/math3/dfp/Dfp.java\n@@ -1600,7 +1600,11 @@ public Dfp multiply(final Dfp x) {\n * @return product of this and x\n */\n public Dfp multiply(final int x) {\n+ if (x >= 0 && x < RADIX) {\n return multiplyFast(x);\n+ } else {\n+ return multiply(newInstance(x));\n+ }\n }\n \n /** Multiply this by a single digit 0<=x<radix.\n", + "failingTests": [ + { + "className": " org.apache.commons.math3.dfp.DfpTest", + "error": "junit.framework.AssertionFailedError", + "message": "assersion failed Multiply #37 x = NaN flags = 1", + "methodName": "testMultiply" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 4, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 4, + "spreadAllLines": 1, + "spreadCodeOnly": 1 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "condBranIfElseAdd", + "mcAdd", + "retBranchAdd" + ], + "repairPatterns": [ + "wrapsIfElse" + ], + "repairTools": [], + "revisionId": "621806b796bc416f00341feca894ebae07be5ed0" + }, + { + "bugId": 22, + "changedFiles": { + "org/apache/commons/math3/distribution/FDistribution.java": { + "changes": [ + [ + 275 + ] + ] + }, + "org/apache/commons/math3/distribution/UniformRealDistribution.java": { + "changes": [ + [ + 184 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math3/distribution/FDistribution.java\n+++ b/src/main/java/org/apache/commons/math3/distribution/FDistribution.java\n@@ -272,7 +272,7 @@ public double getSupportUpperBound() {\n \n /** {@inheritDoc} */\n public boolean isSupportLowerBoundInclusive() {\n- return true;\n+ return false;\n }\n \n /** {@inheritDoc} */\n--- a/src/main/java/org/apache/commons/math3/distribution/UniformRealDistribution.java\n+++ b/src/main/java/org/apache/commons/math3/distribution/UniformRealDistribution.java\n@@ -181,7 +181,7 @@ public boolean isSupportLowerBoundInclusive() {\n \n /** {@inheritDoc} */\n public boolean isSupportUpperBoundInclusive() {\n- return false;\n+ return true;\n }\n \n /**\n", + "failingTests": [ + { + "className": " org.apache.commons.math3.distribution.FDistributionTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected: but was:", + "methodName": "testIsSupportLowerBoundInclusive" + }, + { + "className": " org.apache.commons.math3.distribution.UniformRealDistributionTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected: but was:", + "methodName": "testIsSupportUpperBoundInclusive" + } + ], + "metrics": { + "chunks": 2, + "classes": 2, + "files": 2, + "linesAdd": 0, + "linesMod": 2, + "linesRem": 0, + "methods": 2, + "sizeInLines": 2, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "retExpChange" + ], + "repairPatterns": [ + "constChange" + ], + "repairTools": [ + "rtDeepRepair", + "rtHDRepair" + ], + "revisionId": "b0cba9a79ee99b09958dec8e40c75bed47b7f780" + }, + { + "bugId": 16, + "changedFiles": { + "org/apache/commons/math3/util/FastMath.java": { + "changes": [ + [ + 397 + ], + [ + 458 + ] + ], + "inserts": [ + [ + -1 + ], + [ + 394, + 395 + ], + [ + 396 + ], + [ + 398, + 399 + ], + [ + 400 + ], + [ + 455, + 456 + ], + [ + 457 + ], + [ + 459, + 460 + ], + [ + 461 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math3/util/FastMath.java\n+++ b/src/main/java/org/apache/commons/math3/util/FastMath.java\n@@ -79,6 +79,7 @@\n */\n public class FastMath {\n /** StrictMath.log(Double.MAX_VALUE): {@value} */\n+ private static final double LOG_MAX_VALUE = StrictMath.log(Double.MAX_VALUE);\n \n /** Archimede's constant PI, ratio of circle circumference to diameter. */\n public static final double PI = 105414357.0 / 33554432.0 + 1.984187159361080883e-9;\n@@ -391,12 +392,21 @@ public static double cosh(double x) {\n // exp(-z) can be ignored in comparison with exp(z)\n \n if (x > 20) {\n+ if (x >= LOG_MAX_VALUE) {\n // Avoid overflow (MATH-905).\n+ final double t = exp(0.5 * x);\n+ return (0.5 * t) * t;\n+ } else {\n return 0.5 * exp(x);\n }\n- if (x < -20) {\n+ } else if (x < -20) {\n+ if (x <= -LOG_MAX_VALUE) {\n // Avoid overflow (MATH-905).\n+ final double t = exp(-0.5 * x);\n+ return (0.5 * t) * t;\n+ } else {\n return 0.5 * exp(-x);\n+ }\n }\n \n final double hiPrec[] = new double[2];\n@@ -452,12 +462,21 @@ public static double sinh(double x) {\n // exp(-z) can be ignored in comparison with exp(z)\n \n if (x > 20) {\n+ if (x >= LOG_MAX_VALUE) {\n // Avoid overflow (MATH-905).\n+ final double t = exp(0.5 * x);\n+ return (0.5 * t) * t;\n+ } else {\n return 0.5 * exp(x);\n }\n- if (x < -20) {\n+ } else if (x < -20) {\n+ if (x <= -LOG_MAX_VALUE) {\n // Avoid overflow (MATH-905).\n+ final double t = exp(-0.5 * x);\n+ return (-0.5 * t) * t;\n+ } else {\n return -0.5 * exp(-x);\n+ }\n }\n \n if (x == 0) {\n", + "failingTests": [ + { + "className": " org.apache.commons.math3.util.FastMathTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<0.0> but was:", + "methodName": "testMath905LargePositive" + }, + { + "className": " org.apache.commons.math3.util.FastMathTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<0.0> but was:", + "methodName": "testMath905LargeNegative" + } + ], + "metrics": { + "chunks": 11, + "classes": 1, + "files": 1, + "linesAdd": 19, + "linesMod": 2, + "linesRem": 0, + "methods": 2, + "sizeInLines": 21, + "spreadAllLines": 377, + "spreadCodeOnly": 235 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignAdd", + "condBranIfElseAdd", + "mcAdd", + "retBranchAdd", + "varAdd" + ], + "repairPatterns": [ + "copyPaste", + "wrapsIfElse" + ], + "repairTools": [], + "revisionId": "875ed1f4d90d1457c0ab40dafc79be5a0c6f9bf6" + }, + { + "bugId": 18, + "changedFiles": { + "org/apache/commons/math3/optimization/direct/CMAESOptimizer.java": { + "changes": [ + [ + 932 + ], + [ + 958 + ], + [ + 992 + ], + [ + 995 + ] + ], + "inserts": [ + [ + 989, + 990, + 991 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math3/optimization/direct/CMAESOptimizer.java\n+++ b/src/main/java/org/apache/commons/math3/optimization/direct/CMAESOptimizer.java\n@@ -929,7 +929,7 @@ public FitnessFunction() {\n double[] res = new double[x.length];\n for (int i = 0; i < x.length; i++) {\n double diff = boundaries[1][i] - boundaries[0][i];\n- res[i] = (x[i] - boundaries[0][i]) / diff;\n+ res[i] = x[i] / diff;\n }\n return res;\n }\n@@ -955,7 +955,7 @@ public FitnessFunction() {\n double[] res = new double[x.length];\n for (int i = 0; i < x.length; i++) {\n double diff = boundaries[1][i] - boundaries[0][i];\n- res[i] = diff * x[i] + boundaries[0][i];\n+ res[i] = diff * x[i];\n }\n return res;\n }\n@@ -987,12 +987,14 @@ public boolean isFeasible(final double[] x) {\n return true;\n }\n \n+ final double[] bLoEnc = encode(boundaries[0]);\n+ final double[] bHiEnc = encode(boundaries[1]);\n \n for (int i = 0; i < x.length; i++) {\n- if (x[i] < 0) {\n+ if (x[i] < bLoEnc[i]) {\n return false;\n }\n- if (x[i] > 1.0) {\n+ if (x[i] > bHiEnc[i]) {\n return false;\n }\n }\n", + "failingTests": [ + { + "className": " org.apache.commons.math3.optimization.direct.CMAESOptimizerTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<11.100000000386425> but was:<8.0>", + "methodName": "testFitAccuracyDependsOnBoundary" + } + ], + "metrics": { + "chunks": 5, + "classes": 1, + "files": 1, + "linesAdd": 2, + "linesMod": 4, + "linesRem": 0, + "methods": 3, + "sizeInLines": 6, + "spreadAllLines": 60, + "spreadCodeOnly": 38 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignAdd", + "assignExpChange", + "condExpMod", + "mcAdd", + "varAdd" + ], + "repairPatterns": [ + "expArithMod", + "expLogicMod", + "wrongComp" + ], + "repairTools": [ + "rtCardumen", + "rtDeepRepair" + ], + "revisionId": "7c7d7e8f103582e753c39a2baf14a483e991fefb" + }, + { + "bugId": 20, + "changedFiles": { + "org/apache/commons/math3/optimization/direct/CMAESOptimizer.java": { + "changes": [ + [ + 921 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math3/optimization/direct/CMAESOptimizer.java\n+++ b/src/main/java/org/apache/commons/math3/optimization/direct/CMAESOptimizer.java\n@@ -918,7 +918,8 @@ public FitnessFunction() {\n * @return the original objective variables, possibly repaired.\n */\n public double[] repairAndDecode(final double[] x) {\n- return\n+ return boundaries != null && isRepairMode ?\n+ decode(repair(x)) :\n decode(x);\n }\n \n", + "failingTests": [ + { + "className": " org.apache.commons.math3.optimization.direct.CMAESOptimizerTest", + "error": "junit.framework.AssertionFailedError", + "message": "Out of bounds (0.7651312169618905 > 0.5)", + "methodName": "testMath864" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 1, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 2, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Adds a new return output alternative through conditional expression of the form \"exp?a:b\". Something to think: \"Is it a change in return expression, a return branch adding or both?\". For now, it is considered as both.", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "condBranIfElseAdd", + "mcAdd", + "retBranchAdd", + "retExpChange" + ], + "repairPatterns": [ + "missNullCheckN", + "singleLine", + "wrapsIfElse" + ], + "repairTools": [ + "rtCardumen", + "rtDeepRepair", + "rtElixir", + "rtGPFL" + ], + "revisionId": "efa9de05114492ca38cf4739a07339f5ad6faddc" + }, + { + "bugId": 19, + "changedFiles": { + "org/apache/commons/math3/optimization/direct/CMAESOptimizer.java": { + "inserts": [ + [ + 538, + 539, + 540 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math3/optimization/direct/CMAESOptimizer.java\n+++ b/src/main/java/org/apache/commons/math3/optimization/direct/CMAESOptimizer.java\n@@ -537,6 +537,19 @@ private void checkParameters() {\n boundaries[1] = uB;\n \n // Abort early if the normalization will overflow (cf. \"encode\" method).\n+ for (int i = 0; i < lB.length; i++) {\n+ if (Double.isInfinite(boundaries[1][i] - boundaries[0][i])) {\n+ final double max = Double.MAX_VALUE + boundaries[0][i];\n+ final NumberIsTooLargeException e\n+ = new NumberIsTooLargeException(boundaries[1][i],\n+ max,\n+ true);\n+ e.getContext().addMessage(LocalizedFormats.OVERFLOW);\n+ e.getContext().addMessage(LocalizedFormats.INDEX, i);\n+\n+ throw e;\n+ }\n+ }\n }\n } else {\n // Convert API to internal handling of boundaries.\n", + "failingTests": [ + { + "className": " org.apache.commons.math3.optimization.direct.CMAESOptimizerTest", + "error": "java.lang.Exception", + "message": "Unexpected exception, expected but was", + "methodName": "testBoundaryRangeTooLarge" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 13, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 13, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignAdd", + "condBranIfAdd", + "exThrowsAdd", + "loopAdd", + "mcAdd", + "objInstAdd", + "varAdd" + ], + "repairPatterns": [ + "condBlockExcAdd", + "missComp" + ], + "repairTools": [], + "revisionId": "c73fad0a0d42103b5e13a68317ea95b1090263ba" + }, + { + "bugId": 23, + "changedFiles": { + "org/apache/commons/math3/optimization/univariate/BrentOptimizer.java": { + "changes": [ + [ + 237 + ], + [ + 274 + ], + [ + 275 + ], + [ + 276 + ], + [ + 277 + ] + ], + "inserts": [ + [ + 150, + 151, + 152, + 153 + ], + [ + 234, + 235 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math3/optimization/univariate/BrentOptimizer.java\n+++ b/src/main/java/org/apache/commons/math3/optimization/univariate/BrentOptimizer.java\n@@ -148,6 +148,7 @@ protected UnivariatePointValuePair doOptimize() {\n UnivariatePointValuePair current\n = new UnivariatePointValuePair(x, isMinim ? fx : -fx);\n // Best point encountered so far (which is the initial guess).\n+ UnivariatePointValuePair best = current;\n \n int iter = 0;\n while (true) {\n@@ -231,10 +232,15 @@ protected UnivariatePointValuePair doOptimize() {\n // User-defined convergence checker.\n previous = current;\n current = new UnivariatePointValuePair(u, isMinim ? fu : -fu);\n+ best = best(best,\n+ best(current,\n+ previous,\n+ isMinim),\n+ isMinim);\n \n if (checker != null) {\n if (checker.converged(iter, previous, current)) {\n- return best(current, previous, isMinim);\n+ return best;\n }\n }\n \n@@ -271,9 +277,10 @@ protected UnivariatePointValuePair doOptimize() {\n }\n }\n } else { // Default termination (Brent's criterion).\n- return\n+ return best(best,\n best(current,\n previous,\n+ isMinim),\n isMinim);\n }\n ++iter;\n", + "failingTests": [ + { + "className": " org.apache.commons.math3.optimization.univariate.BrentOptimizerTest", + "error": "junit.framework.AssertionFailedError", + "message": "Best point not reported", + "methodName": "testKeepInitIfBest" + } + ], + "metrics": { + "chunks": 5, + "classes": 1, + "files": 1, + "linesAdd": 7, + "linesMod": 2, + "linesRem": 0, + "methods": 1, + "sizeInLines": 9, + "spreadAllLines": 124, + "spreadCodeOnly": 104 + }, + "observations": "Call overloaded method with extra params. 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i < order; ++i) {\n index[i] = i;\n@@ -76,21 +75,24 @@ public RectangularCholeskyDecomposition(RealMatrix matrix, double small)\n for (boolean loop = true; loop;) {\n \n // find maximal diagonal element\n- swap[r] = r;\n+ int swapR = r;\n for (int i = r + 1; i < order; ++i) {\n int ii = index[i];\n- int isi = index[swap[i]];\n- if (c[ii][ii] > c[isi][isi]) {\n- swap[r] = i;\n+ int isr = index[swapR];\n+ if (c[ii][ii] > c[isr][isr]) {\n+ swapR = i;\n }\n }\n \n \n // swap elements\n- if (swap[r] != r) {\n- int tmp = index[r];\n- index[r] = index[swap[r]];\n- index[swap[r]] = tmp;\n+ if (swapR != r) {\n+ final int tmpIndex = index[r];\n+ index[r] = index[swapR];\n+ index[swapR] = tmpIndex;\n+ final double[] tmpRow = b[r];\n+ b[r] = b[swapR];\n+ b[swapR] = tmpRow;\n }\n \n // check diagonal element\n@@ -121,11 +123,12 @@ public RectangularCholeskyDecomposition(RealMatrix matrix, double small)\n final double sqrt = FastMath.sqrt(c[ir][ir]);\n b[r][r] = sqrt;\n final double inverse = 1 / sqrt;\n+ final double inverse2 = 1 / c[ir][ir];\n for (int i = r + 1; i < order; ++i) {\n final int ii = index[i];\n final double e = inverse * c[ii][ir];\n b[i][r] = e;\n- c[ii][ii] -= e * e;\n+ c[ii][ii] -= c[ii][ir] * c[ii][ir] * inverse2;\n for (int j = r + 1; j < i; ++j) {\n final int ij = index[j];\n final double f = c[ii][ij] - e * b[j][r];\n", + "failingTests": [ + { + "className": " org.apache.commons.math3.linear.RectangularCholeskyDecompositionTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<0.0> but was:<0.0180652917341963>", + "methodName": "testMath789" + }, + { + "className": " org.apache.commons.math3.linear.RectangularCholeskyDecompositionTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testFullRank" + } + ], + "metrics": { + "chunks": 6, + "classes": 1, + "files": 1, + "linesAdd": 4, + "linesMod": 9, + "linesRem": 1, + "methods": 1, + "sizeInLines": 14, + "spreadAllLines": 50, + "spreadCodeOnly": 31 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignAdd", + "assignRem", + "condBranIfAdd", + "varAdd", + "varRem", + "varReplVar" + ], + "repairPatterns": [ + "expArithMod", + "expLogicMod", + "wrongComp", + "wrongVarRef" + ], + "repairTools": [], + "revisionId": "468ed8550b7759858a4dc59d694859a8ae7d35f0" + }, + { + "bugId": 24, + "changedFiles": { + "org/apache/commons/math3/optimization/univariate/BrentOptimizer.java": { + "changes": [ + [ + 230 + ], + [ + 267 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math3/optimization/univariate/BrentOptimizer.java\n+++ b/src/main/java/org/apache/commons/math3/optimization/univariate/BrentOptimizer.java\n@@ -227,7 +227,7 @@ protected UnivariatePointValuePair doOptimize() {\n \n if (checker != null) {\n if (checker.converged(iter, previous, current)) {\n- return current;\n+ return best(current, previous, isMinim);\n }\n }\n \n@@ -264,7 +264,7 @@ protected UnivariatePointValuePair doOptimize() {\n }\n }\n } else { // Default termination (Brent's criterion).\n- return current;\n+ return best(current, previous, isMinim);\n }\n ++iter;\n }\n", + "failingTests": [ + { + "className": " org.apache.commons.math3.optimization.univariate.BrentOptimizerTest", + "error": "junit.framework.AssertionFailedError", + "message": "Best point not reported", + "methodName": "testMath855" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 2, + "linesRem": 0, + "methods": 1, + "sizeInLines": 2, + "spreadAllLines": 36, + "spreadCodeOnly": 34 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "mcAdd", + "retExpChange" + ], + "repairPatterns": [ + "copyPaste", + "wrapsMethod" + ], + "repairTools": [ + "rtDeepRepair", + "rtDynaMoth", + "rtNopol" + ], + "revisionId": "d5ff460ba69e4261f066d7856e2f90b886924513" + }, + { + "bugId": 30, + "changedFiles": { + "org/apache/commons/math3/stat/inference/MannWhitneyUTest.java": { + "changes": [ + [ + 173 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math3/stat/inference/MannWhitneyUTest.java\n+++ b/src/main/java/org/apache/commons/math3/stat/inference/MannWhitneyUTest.java\n@@ -170,7 +170,7 @@ private double calculateAsymptoticPValue(final double Umin,\n final int n2)\n throws ConvergenceException, MaxCountExceededException {\n \n- final int n1n2prod = n1 * n2;\n+ final double n1n2prod = n1 * n2;\n \n // http://en.wikipedia.org/wiki/Mann%E2%80%93Whitney_U#Normal_approximation\n final double EU = n1n2prod / 2.0;\n", + "failingTests": [ + { + "className": " org.apache.commons.math3.stat.inference.MannWhitneyUTestTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testBigDataSet" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "varTyChange" + ], + "repairPatterns": [ + "singleLine" + ], + "repairTools": [ + "rtCardumen", + "rtElixir" + ], + "revisionId": "a25e7f7abe7f6b3f4147febee4a917ce92241aab" + }, + { + "bugId": 25, + "changedFiles": { + "org/apache/commons/math3/optimization/fitting/HarmonicFitter.java": { + "inserts": [ + [ + 323, + 324, + 325, + 326 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math3/optimization/fitting/HarmonicFitter.java\n+++ b/src/main/java/org/apache/commons/math3/optimization/fitting/HarmonicFitter.java\n@@ -320,8 +320,11 @@ private void guessAOmega() {\n }\n a = 0.5 * (yMax - yMin);\n } else {\n+ if (c2 == 0) {\n // In some ill-conditioned cases (cf. MATH-844), the guesser\n // procedure cannot produce sensible results.\n+ throw new MathIllegalStateException(LocalizedFormats.ZERO_DENOMINATOR);\n+ }\n \n a = FastMath.sqrt(c1 / c2);\n omega = FastMath.sqrt(c2 / c3);\n", + "failingTests": [ + { + "className": " org.apache.commons.math3.optimization.fitting.HarmonicFitterTest", + "error": "junit.framework.AssertionFailedError", + "message": "Expected exception: org.apache.commons.math3.exception.MathIllegalStateException", + "methodName": "testMath844" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 3, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 3, + "spreadAllLines": 2, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "condBranIfAdd", + "exThrowsAdd", + "objInstAdd" + ], + "repairPatterns": [ + "condBlockExcAdd" + ], + "repairTools": [ + "rtAcs" + ], + "revisionId": "996dd998e3081e4a842017b8ebcdae9b6059b530" + }, + { + "bugId": 26, + "changedFiles": { + "org/apache/commons/math3/fraction/Fraction.java": { + "changes": [ + [ + 181 + ], + [ + 209 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math3/fraction/Fraction.java\n+++ b/src/main/java/org/apache/commons/math3/fraction/Fraction.java\n@@ -178,7 +178,7 @@ private Fraction(double value, double epsilon, int maxDenominator, int maxIterat\n long overflow = Integer.MAX_VALUE;\n double r0 = value;\n long a0 = (long)FastMath.floor(r0);\n- if (a0 > overflow) {\n+ if (FastMath.abs(a0) > overflow) {\n throw new FractionConversionException(value, a0, 1l);\n }\n \n@@ -206,7 +206,7 @@ private Fraction(double value, double epsilon, int maxDenominator, int maxIterat\n long a1 = (long)FastMath.floor(r1);\n p2 = (a1 * p1) + p0;\n q2 = (a1 * q1) + q0;\n- if ((p2 > overflow) || (q2 > overflow)) {\n+ if ((FastMath.abs(p2) > overflow) || (FastMath.abs(q2) > overflow)) {\n throw new FractionConversionException(value, p2, q2);\n }\n \n", + "failingTests": [ + { + "className": " org.apache.commons.math3.fraction.FractionTest", + "error": "junit.framework.AssertionFailedError", + "message": "an exception should have been thrown", + "methodName": "testIntegerOverflow" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 2, + "linesRem": 0, + "methods": 1, + "sizeInLines": 2, + "spreadAllLines": 27, + "spreadCodeOnly": 21 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "condExpMod", + "mcAdd" + ], + "repairPatterns": [ + "expLogicMod", + "wrapsMethod" + ], + "repairTools": [], + "revisionId": "1566dd339f6efc2347b0962fac7fce22adbc31ff" + }, + { + "bugId": 27, + "changedFiles": { + "org/apache/commons/math3/fraction/Fraction.java": { + "changes": [ + [ + 597 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math3/fraction/Fraction.java\n+++ b/src/main/java/org/apache/commons/math3/fraction/Fraction.java\n@@ -594,7 +594,7 @@ public Fraction divide(final int i) {\n * @return the fraction percentage as a double.\n */\n public double percentageValue() {\n- return multiply(100).doubleValue();\n+ return 100 * doubleValue();\n }\n \n /**\n", + "failingTests": [ + { + "className": " org.apache.commons.math3.fraction.FractionTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<2.1691754E9> but was:<-2.125791896E9>", + "methodName": "testMath835" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "mcRem", + "retExpChange" + ], + "repairPatterns": [ + "expArithMod", + "singleLine", + "unwrapMethod" + ], + "repairTools": [], + "revisionId": "5f2077bb774d283e7984a2d5dc0c2759f2954963" + }, + { + "bugId": 29, + "changedFiles": { + "org/apache/commons/math3/linear/OpenMapRealVector.java": { + "changes": [ + [ + 349 + ], + [ + 350 + ], + [ + 351 + ], + [ + 352 + ] + ], + "inserts": [ + [ + 367, + 368, + 369, + 370, + 371, + 372, + 373, + 374 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math3/linear/OpenMapRealVector.java\n+++ b/src/main/java/org/apache/commons/math3/linear/OpenMapRealVector.java\n@@ -346,10 +346,9 @@ public OpenMapRealVector ebeDivide(RealVector v) {\n * this only. 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minRatioPositions) {\n@@ -149,6 +152,7 @@ private Integer getPivotRow(SimplexTableau tableau, final int col) {\n }\n }\n return minRow;\n+ }\n }\n return minRatioPositions.get(0);\n }\n", + "failingTests": [ + { + "className": " org.apache.commons.math3.optimization.linear.SimplexSolverTest", + "error": "org.apache.commons.math3.exception.MaxCountExceededException", + "message": "illegal state: maximal count (100) exceeded", + "methodName": "testMath828Cycle" + } + ], + "metrics": { + "chunks": 4, + "classes": 1, + "files": 1, + "linesAdd": 4, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 4, + "spreadAllLines": 33, + "spreadCodeOnly": 23 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "condBranIfAdd", + "mcAdd" + ], + "repairPatterns": [ + "wrapsIf" + ], + "repairTools": [ + "rtCardumen", + "rtDeepRepair", + "rtDynaMoth", + "rtGPFL", + "rtGenProg", + "rtKali", + "rtNopol" + ], + "revisionId": 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191 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math3/util/ContinuedFraction.java\n+++ b/src/main/java/org/apache/commons/math3/util/ContinuedFraction.java\n@@ -131,8 +131,6 @@ public double evaluate(double x, double epsilon, int maxIterations) {\n \n int n = 1;\n double dPrev = 0.0;\n- double p0 = 1.0;\n- double q1 = 1.0;\n double cPrev = hPrev;\n double hN = hPrev;\n \n@@ -140,34 +138,18 @@ public double evaluate(double x, double epsilon, int maxIterations) {\n final double a = getA(n, x);\n final double b = getB(n, x);\n \n- double cN = a * hPrev + b * p0;\n- double q2 = a * q1 + b * dPrev;\n- if (Double.isInfinite(cN) || Double.isInfinite(q2)) {\n- double scaleFactor = 1d;\n- double lastScaleFactor = 1d;\n- final int maxPower = 5;\n- final double scale = FastMath.max(a,b);\n- if (scale <= 0) { // Can't scale\n- throw new ConvergenceException(LocalizedFormats.CONTINUED_FRACTION_INFINITY_DIVERGENCE, x);\n- }\n- for (int i = 0; i < maxPower; i++) {\n- lastScaleFactor = scaleFactor;\n- scaleFactor *= scale;\n- if (a != 0.0 && a > b) {\n- cN = hPrev / lastScaleFactor + (b / scaleFactor * p0);\n- q2 = q1 / lastScaleFactor + (b / scaleFactor * dPrev);\n- } else if (b != 0) {\n- cN = (a / scaleFactor * hPrev) + p0 / lastScaleFactor;\n- q2 = (a / scaleFactor * q1) + dPrev / lastScaleFactor;\n- }\n- if (!(Double.isInfinite(cN) || Double.isInfinite(q2))) {\n- break;\n- }\n- }\n+ double dN = a + b * dPrev;\n+ if (Precision.equals(dN, 0.0, small)) {\n+ dN = small;\n+ }\n+ double cN = a + b / cPrev;\n+ if (Precision.equals(cN, 0.0, small)) {\n+ cN = small;\n }\n \n- final double deltaN = cN / q2 / cPrev;\n- hN = cPrev * deltaN;\n+ dN = 1 / dN;\n+ final double deltaN = cN * dN;\n+ hN = hPrev * deltaN;\n \n if (Double.isInfinite(hN)) {\n throw new ConvergenceException(LocalizedFormats.CONTINUED_FRACTION_INFINITY_DIVERGENCE,\n@@ -182,11 +164,9 @@ public double evaluate(double x, double epsilon, int maxIterations) {\n break;\n }\n \n- dPrev = q1;\n- cPrev = cN / q2;\n- p0 = hPrev;\n- hPrev = cN;\n- q1 = q2;\n+ dPrev = dN;\n+ cPrev = cN;\n+ hPrev = hN;\n n++;\n }\n \n", + "failingTests": [ + { + "className": " org.apache.commons.math3.distribution.BinomialDistributionTest", + "error": "org.apache.commons.math3.exception.ConvergenceException", + "message": "illegal state: Continued fraction diverged to NaN for value 0.5", + "methodName": "testMath718" + }, + { + "className": " org.apache.commons.math3.distribution.FDistributionTest", + "error": "junit.framework.AssertionFailedError", + "message": "Failing to calculate inverse cumulative probability", + "methodName": "testMath785" + } + ], + "metrics": { + "chunks": 4, + "classes": 1, + "files": 1, + "linesAdd": 1, + "linesMod": 12, + "linesRem": 21, + "methods": 1, + "sizeInLines": 34, + "spreadAllLines": 23, + "spreadCodeOnly": 17 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignAdd", + "assignRem", + "condBranRem", + "exThrowsRem", + "loopRem", + "mcAdd", + "mcRem", + "objInstRem", + "varAdd", + "varRem", + "varReplVar" + ], + "repairPatterns": [ + "blockRemove", + "condBlockOthersAdd", + "condBlockRem", + "expArithMod", + "wrongComp", + "wrongVarRef" + ], + "repairTools": [], + "revisionId": "2d846db3aec18dd081e680be05f6e0faad1cb186" + }, + { + "bugId": 32, + "changedFiles": { + "org/apache/commons/math3/geometry/euclidean/twod/PolygonsSet.java": { + "changes": [ + [ + 136 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math3/geometry/euclidean/twod/PolygonsSet.java\n+++ b/src/main/java/org/apache/commons/math3/geometry/euclidean/twod/PolygonsSet.java\n@@ -133,7 +133,7 @@ protected void computeGeometricalProperties() {\n \n if (v.length == 0) {\n final BSPTree tree = getTree(false);\n- if ((Boolean) tree.getAttribute()) {\n+ if (tree.getCut() == null && (Boolean) tree.getAttribute()) {\n // the instance covers the whole space\n setSize(Double.POSITIVE_INFINITY);\n setBarycenter(Vector2D.NaN);\n", + "failingTests": [ + { + "className": " org.apache.commons.math3.geometry.euclidean.threed.PolyhedronsSetTest", + "error": "java.lang.ClassCastException", + "message": "org.apache.commons.math3.geometry.partitioning.BoundaryAttribute cannot be cast to java.lang.Boolean", + "methodName": "testIssue780" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "condExpExpand", + "mcAdd" + ], + "repairPatterns": [ + "expLogicExpand", + "missNullCheckP", + "singleLine" + ], + "repairTools": [ + "rtCardumen", + "rtDeepRepair", + "rtDynaMoth", + "rtElixir", + "rtJAID", + "rtKali" + ], + "revisionId": "f81847d8079753ce45b049813730055188a22efb" + }, + { + "bugId": 35, + "changedFiles": { + "org/apache/commons/math3/genetics/ElitisticListPopulation.java": { + "changes": [ + [ + 51 + ], + [ + 65 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math3/genetics/ElitisticListPopulation.java\n+++ b/src/main/java/org/apache/commons/math3/genetics/ElitisticListPopulation.java\n@@ -48,7 +48,7 @@ public ElitisticListPopulation(final List chromosomes,\n final int populationLimit,\n final double elitismRate) {\n super(chromosomes, populationLimit);\n- this.elitismRate = elitismRate;\n+ setElitismRate(elitismRate);\n }\n \n /**\n@@ -62,7 +62,7 @@ public ElitisticListPopulation(final List chromosomes,\n */\n public ElitisticListPopulation(final int populationLimit, final double elitismRate) {\n super(populationLimit);\n- this.elitismRate = elitismRate;\n+ setElitismRate(elitismRate);\n }\n \n /**\n", + "failingTests": [ + { + "className": " org.apache.commons.math3.genetics.ElitisticListPopulationTest", + "error": "junit.framework.AssertionFailedError", + "message": "Expected exception: org.apache.commons.math3.exception.OutOfRangeException", + "methodName": "testChromosomeListConstructorTooLow" + }, + { + "className": " org.apache.commons.math3.genetics.ElitisticListPopulationTest", + "error": "junit.framework.AssertionFailedError", + "message": "Expected exception: org.apache.commons.math3.exception.OutOfRangeException", + "methodName": "testConstructorTooHigh" + }, + { + "className": " org.apache.commons.math3.genetics.ElitisticListPopulationTest", + "error": "junit.framework.AssertionFailedError", + "message": "Expected exception: org.apache.commons.math3.exception.OutOfRangeException", + "methodName": "testConstructorTooLow" + }, + { + "className": " org.apache.commons.math3.genetics.ElitisticListPopulationTest", + "error": "junit.framework.AssertionFailedError", + "message": "Expected exception: org.apache.commons.math3.exception.OutOfRangeException", + "methodName": "testChromosomeListConstructorTooHigh" + } + ], + "metrics": { + "chunks": 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getArtificialVariableOffset(); i++) {\n final double entry = tableau.getEntry(0, i);\n- if (Precision.compareTo(entry, 0d, maxUlps) > 0) {\n+ if (Precision.compareTo(entry, 0d, epsilon) > 0) {\n columnsToDrop.add(i);\n }\n }\n", + "failingTests": [ + { + "className": " org.apache.commons.math3.optimization.linear.SimplexSolverTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testMath781" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "A variable used in a method call is replaced by another one.", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "mcParValChange", + "varReplVar" + ], + "repairPatterns": [ + "expLogicMod", + "singleLine", + "wrongVarRef" + ], + "repairTools": [ + "rtCardumen", + "rtDynaMoth", + "rtElixir", + "rtNopol", + "rtssFix" + ], + "revisionId": "3ef79313597d7d49067c48d65a09042d8d94822d" + }, + { + "bugId": 37, + "changedFiles": { + "org/apache/commons/math/complex/Complex.java": { + "changes": [ + [ + 1018 + ], + [ + 1063 + ] + ], + "inserts": [ + [ + 1021, + 1022 + ], + [ + 1066 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/complex/Complex.java\n+++ b/src/main/java/org/apache/commons/math/complex/Complex.java\n@@ -1015,9 +1015,15 @@ public Complex sqrt1z() {\n * @since 1.2\n */\n public Complex tan() {\n- if (isNaN) {\n+ if (isNaN || Double.isInfinite(real)) {\n return NaN;\n }\n+ if (imaginary > 20.0) {\n+ return createComplex(0.0, 1.0);\n+ }\n+ if (imaginary < -20.0) {\n+ return createComplex(0.0, -1.0);\n+ }\n \n double real2 = 2.0 * real;\n double imaginary2 = 2.0 * imaginary;\n@@ -1060,9 +1066,15 @@ public Complex tan() {\n * @since 1.2\n */\n public Complex tanh() {\n- if (isNaN) {\n+ if (isNaN || Double.isInfinite(imaginary)) {\n return NaN;\n }\n+ if (real > 20.0) {\n+ return createComplex(1.0, 0.0);\n+ }\n+ if (real < -20.0) {\n+ return createComplex(-1.0, 0.0);\n+ }\n double real2 = 2.0 * real;\n double imaginary2 = 2.0 * imaginary;\n double d = FastMath.cosh(real2) + FastMath.cos(imaginary2);\n", + "failingTests": [ + { + "className": " org.apache.commons.math.complex.ComplexTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<1.0> but was:", + "methodName": "testTanhInf" + }, + { + "className": " org.apache.commons.math.complex.ComplexTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<1.0> but was:", + "methodName": "testTan" + }, + { + "className": " org.apache.commons.math.complex.ComplexTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<1.0> but was:", + "methodName": "testTanh" + }, + { + "className": " org.apache.commons.math.complex.ComplexTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<1.0> but was:", + "methodName": "testTanInf" + } + ], + "metrics": { + "chunks": 4, + "classes": 1, + "files": 1, + "linesAdd": 12, + "linesMod": 2, + "linesRem": 0, + "methods": 2, + "sizeInLines": 14, + "spreadAllLines": 46, + "spreadCodeOnly": 11 + }, + "observations": "The changes are almost the same in two different places... same structure, but with variattions in the parameters/arguments.", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "condBranIfAdd", + "condExpExpand", + "mcAdd", + "retBranchAdd" + ], + "repairPatterns": [ + "condBlockRetAdd", + "copyPaste", + "expLogicExpand", + "missComp" + ], + "repairTools": [], + "revisionId": "65ed08e15af15617e967d3ea9d635dc55a0ef866" + }, + { + "bugId": 34, + "changedFiles": { + "org/apache/commons/math3/genetics/ListPopulation.java": { + "changes": [ + [ + 209 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math3/genetics/ListPopulation.java\n+++ b/src/main/java/org/apache/commons/math3/genetics/ListPopulation.java\n@@ -206,6 +206,6 @@ public String toString() {\n * @return chromosome iterator\n */\n public Iterator iterator() {\n- return chromosomes.iterator();\n+ return getChromosomes().iterator();\n }\n }\n", + "failingTests": [ + { + "className": " org.apache.commons.math3.genetics.ListPopulationTest", + "error": "junit.framework.AssertionFailedError", + "message": "Expected exception: java.lang.UnsupportedOperationException", + "methodName": "testIterator" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "A direct class attribute access was replaced by a method call that gives indirect access to the object.", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "mcAdd", + "varReplMc" + ], + "repairPatterns": [ + "missComp", + "singleLine", + "wrongVarRef" + ], + "repairTools": [ + "rtElixir", + "rtHDRepair" + ], + "revisionId": "520f36b43a13681db338a07ac6c251cbe1a7a6e5" + }, + { + "bugId": 40, + "changedFiles": { + "org/apache/commons/math/analysis/solvers/BracketingNthOrderBrentSolver.java": { + "changes": [ + [ + 235 + ], + [ + 238 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/analysis/solvers/BracketingNthOrderBrentSolver.java\n+++ b/src/main/java/org/apache/commons/math/analysis/solvers/BracketingNthOrderBrentSolver.java\n@@ -232,10 +232,16 @@ protected double doSolve() {\n double targetY;\n if (agingA >= MAXIMAL_AGING) {\n // we keep updating the high bracket, try to compensate this\n- targetY = -REDUCTION_FACTOR * yB;\n+ final int p = agingA - MAXIMAL_AGING;\n+ final double weightA = (1 << p) - 1;\n+ final double weightB = p + 1;\n+ targetY = (weightA * yA - weightB * REDUCTION_FACTOR * yB) / (weightA + weightB);\n } else if (agingB >= MAXIMAL_AGING) {\n // we keep updating the low bracket, try to compensate this\n- targetY = -REDUCTION_FACTOR * yA;\n+ final int p = agingB - MAXIMAL_AGING;\n+ final double weightA = p + 1;\n+ final double weightB = (1 << p) - 1;\n+ targetY = (weightB * yB - weightA * REDUCTION_FACTOR * yA) / (weightA + weightB);\n } else {\n // bracketing is balanced, try to find the root itself\n targetY = 0;\n", + "failingTests": [ + { + "className": " org.apache.commons.math.analysis.solvers.BracketingNthOrderBrentSolverTest", + "error": "org.apache.commons.math.exception.TooManyEvaluationsException", + "message": "illegal state: maximal count (100) exceeded: evaluations", + "methodName": "testIssue716" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 6, + "linesMod": 2, + "linesRem": 0, + "methods": 1, + "sizeInLines": 8, + "spreadAllLines": 2, + "spreadCodeOnly": 1 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignAdd", + "assignExpChange", + "varAdd" + ], + "repairPatterns": [ + "copyPaste", + "expArithMod", + "wrongComp" + ], + "repairTools": [ + "rtCardumen", + "rtDeepRepair", + "rtDynaMoth", + "rtGPFL", + "rtGenProg", + "rtKali", + "rtNopol" + ], + "revisionId": "c8becc7c47963bcdc1578298846ad6fbf08f64ef" + }, + { + "bugId": 38, + "changedFiles": { + "org/apache/commons/math/optimization/direct/BOBYQAOptimizer.java": { + "changes": [ + [ + 1662 + ], + [ + 1663 + ] + ], + "deletes": [ + [ + 1660 + ], + [ + 1752 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/optimization/direct/BOBYQAOptimizer.java\n+++ b/src/main/java/org/apache/commons/math/optimization/direct/BOBYQAOptimizer.java\n@@ -1657,10 +1657,10 @@ private void prelim(double[] lowerBound,\n final int tmp2 = jpt;\n jpt = ipt - n;\n ipt = tmp2;\n- throw new PathIsExploredException(); // XXX\n+// throw new PathIsExploredException(); // XXX\n }\n- final int iptMinus1 = ipt;\n- final int jptMinus1 = jpt;\n+ final int iptMinus1 = ipt - 1;\n+ final int jptMinus1 = jpt - 1;\n interpolationPoints.setEntry(nfm, iptMinus1, interpolationPoints.getEntry(ipt, iptMinus1));\n interpolationPoints.setEntry(nfm, jptMinus1, interpolationPoints.getEntry(jpt, jptMinus1));\n }\n@@ -1749,7 +1749,7 @@ private void prelim(double[] lowerBound,\n final int ih = ipt * (ipt - 1) / 2 + jpt - 1;\n final double tmp = interpolationPoints.getEntry(nfm, ipt - 1) * interpolationPoints.getEntry(nfm, jpt - 1);\n modelSecondDerivativesValues.setEntry(ih, (fbeg - fAtInterpolationPoints.getEntry(ipt) - fAtInterpolationPoints.getEntry(jpt) + f) / tmp);\n- throw new PathIsExploredException(); // XXX\n+// throw new PathIsExploredException(); // XXX\n }\n } while (getEvaluations() < npt);\n } // prelim\n", + "failingTests": [ + { + "className": " org.apache.commons.math.optimization.direct.BOBYQAOptimizerTest", + "error": "org.apache.commons.math.optimization.direct.BOBYQAOptimizer$PathIsExploredException", + "message": "If this exception is thrown, just remove it from the code prelim (at line 1752)", + "methodName": "testConstrainedRosenWithMoreInterpolationPoints" + } + ], + "metrics": { + "chunks": 3, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 4, + "linesRem": 0, + "methods": 1, + "sizeInLines": 4, + "spreadAllLines": 89, + "spreadCodeOnly": 70 + }, + "observations": "Removes Exception Thrown. The throws line is commented in code... maybe the change isn't a final one.", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignExpChange", + "exThrowsRem", + "objInstRem" + ], + "repairPatterns": [ + "copyPaste", + "expArithMod", + "initFix", + "wrongComp" + ], + "repairTools": [ + "rtNopol" + ], + "revisionId": "91cc42ba0493938aa53585720b315b62c5784a96" + }, + { + "bugId": 39, + "changedFiles": { + "org/apache/commons/math/ode/nonstiff/EmbeddedRungeKuttaIntegrator.java": { + "inserts": [ + [ + 250, + 251, + 252 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/ode/nonstiff/EmbeddedRungeKuttaIntegrator.java\n+++ b/src/main/java/org/apache/commons/math/ode/nonstiff/EmbeddedRungeKuttaIntegrator.java\n@@ -247,6 +247,15 @@ public void integrate(final ExpandableStatefulODE equations, final double t)\n }\n \n stepSize = hNew;\n+ if (forward) {\n+ if (stepStart + stepSize >= t) {\n+ stepSize = t - stepStart;\n+ }\n+ } else {\n+ if (stepStart + stepSize <= t) {\n+ stepSize = t - stepStart;\n+ }\n+ }\n \n // next stages\n for (int k = 1; k < stages; ++k) {\n", + "failingTests": [ + { + "className": " org.apache.commons.math.ode.nonstiff.DormandPrince853IntegratorTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testTooLargeFirstStep" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 9, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 9, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignAdd", + "condBranIfAdd", + "condBranIfElseAdd" + ], + "repairPatterns": [ + "condBlockOthersAdd", + "missComp" + ], + "repairTools": [ + "rtNopol" + ], + "revisionId": "74e00296574dc3ac0bc064fc3258faabaf732d6c" + }, + { + "bugId": 36, + "changedFiles": { + "org/apache/commons/math/fraction/BigFraction.java": { + "inserts": [ + [ + 686, + 687, + 688 + ], + [ + 733, + 734, + 735 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/fraction/BigFraction.java\n+++ b/src/main/java/org/apache/commons/math/fraction/BigFraction.java\n@@ -683,8 +683,14 @@ public BigFraction divide(final BigFraction fraction) {\n @Override\n public double doubleValue() {\n double result = numerator.doubleValue() / denominator.doubleValue();\n+ if (Double.isNaN(result)) {\n // Numerator and/or denominator must be out of range:\n // Calculate how far to shift them to put them in range.\n+ int shift = Math.max(numerator.bitLength(),\n+ denominator.bitLength()) - Double.MAX_EXPONENT;\n+ result = numerator.shiftRight(shift).doubleValue() /\n+ denominator.shiftRight(shift).doubleValue();\n+ }\n return result;\n }\n \n@@ -730,8 +736,14 @@ public boolean equals(final Object other) {\n @Override\n public float floatValue() {\n float result = numerator.floatValue() / denominator.floatValue();\n+ if (Double.isNaN(result)) {\n // Numerator and/or denominator must be out of range:\n // Calculate how far to shift them to put them in range.\n+ int shift = Math.max(numerator.bitLength(),\n+ denominator.bitLength()) - Float.MAX_EXPONENT;\n+ result = numerator.shiftRight(shift).floatValue() /\n+ denominator.shiftRight(shift).floatValue();\n+ }\n return result;\n }\n \n", + "failingTests": [ + { + "className": " org.apache.commons.math.fraction.BigFractionTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<5.0> but was:", + "methodName": "testFloatValueForLargeNumeratorAndDenominator" + }, + { + "className": " org.apache.commons.math.fraction.BigFractionTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<5.0> but was:", + "methodName": "testDoubleValueForLargeNumeratorAndDenominator" + } + ], + "metrics": { + "chunks": 4, + "classes": 1, + "files": 1, + "linesAdd": 12, + "linesMod": 0, + "linesRem": 0, + "methods": 2, + "sizeInLines": 12, + "spreadAllLines": 49, + "spreadCodeOnly": 17 + }, + "observations": "The change is almost the same in two different places. The only difference between changes is the use of the call \"doubleValue()\" in place of \"floatValue()\" in correspondent methods.", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignAdd", + "condBranIfAdd", + "mcAdd", + "varAdd" + ], + "repairPatterns": [ + "condBlockOthersAdd", + "copyPaste", + "missComp" + ], + "repairTools": [], + "revisionId": "1a15d5f4c13eca0435b0ed7e6a624064e7f7e07f" + }, + { + "bugId": 42, + "changedFiles": { + "org/apache/commons/math/optimization/linear/SimplexTableau.java": { + "inserts": [ + [ + 410, + 411, + 412, + 413 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/optimization/linear/SimplexTableau.java\n+++ b/src/main/java/org/apache/commons/math/optimization/linear/SimplexTableau.java\n@@ -407,10 +407,12 @@ protected RealPointValuePair getSolution() {\n continue;\n }\n Integer basicRow = getBasicRow(colIndex);\n+ if (basicRow != null && basicRow == 0) {\n // if the basic row is found to be the objective function row\n // set the coefficient to 0 -> this case handles unconstrained \n // variables that are still part of the objective function\n- if (basicRows.contains(basicRow)) {\n+ coefficients[i] = 0;\n+ } else if (basicRows.contains(basicRow)) {\n // if multiple variables can take a given value\n // then we choose the first and set the rest equal to 0\n coefficients[i] = 0 - (restrictToNonNegative ? 0 : mostNegative);\n", + "failingTests": [ + { + "className": " org.apache.commons.math.optimization.linear.SimplexSolverTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testMath713NegativeVariable" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 2, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 3, + "spreadAllLines": 3, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "condBranIfElseAdd" + ], + "repairPatterns": [ + "missNullCheckN", + "wrapsIfElse", + "wrongComp" + ], + "repairTools": [ + "rtDynaMoth", + "rtNopol" + ], + "revisionId": "e98a5000cd211539bf4ba65f62cc7f81395e1726" + }, + { + "bugId": 41, + "changedFiles": { + "org/apache/commons/math/stat/descriptive/moment/Variance.java": { + "changes": [ + [ + 520 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/stat/descriptive/moment/Variance.java\n+++ b/src/main/java/org/apache/commons/math/stat/descriptive/moment/Variance.java\n@@ -517,7 +517,7 @@ public double evaluate(final double[] values, final double[] weights,\n }\n \n double sumWts = 0;\n- for (int i = 0; i < weights.length; i++) {\n+ for (int i = begin; i < begin + length; i++) {\n sumWts += weights[i];\n }\n \n", + "failingTests": [ + { + "className": " org.apache.commons.math.stat.descriptive.moment.VarianceTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<1.6644508338125354> but was:<0.31909161062727365>", + "methodName": "testEvaluateArraySegmentWeighted" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "The changes were made only inside the for loop.", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignExpChange", + "loopCondChange", + "loopInitChange", + "varReplVar" + ], + "repairPatterns": [ + "initFix", + "singleLine", + "wrongVarRef" + ], + "repairTools": [ + "rtCardumen", + "rtDynaMoth", + "rtNopol" + ], + "revisionId": "882556eabbeb2f62939aee29afdec2a01ce4bbe1" + }, + { + "bugId": 44, + "changedFiles": { + "org/apache/commons/math/ode/AbstractIntegrator.java": { + "deletes": [ + [ + 280 + ] + ], + "inserts": [ + [ + 334 + ], + [ + 343 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/ode/AbstractIntegrator.java\n+++ b/src/main/java/org/apache/commons/math/ode/AbstractIntegrator.java\n@@ -277,7 +277,6 @@ protected double acceptStep(final AbstractStepInterpolator interpolator,\n \n double previousT = interpolator.getGlobalPreviousTime();\n final double currentT = interpolator.getGlobalCurrentTime();\n- resetOccurred = false;\n \n // initialize the events states if needed\n if (! statesInitialized) {\n@@ -331,6 +330,9 @@ public int compare(EventState es0, EventState es1) {\n if (isLastStep) {\n // the event asked to stop integration\n System.arraycopy(eventY, 0, y, 0, y.length);\n+ for (final EventState remaining : occuringEvents) {\n+ remaining.stepAccepted(eventT, eventY);\n+ }\n return eventT;\n }\n \n@@ -340,6 +342,9 @@ public int compare(EventState es0, EventState es1) {\n System.arraycopy(eventY, 0, y, 0, y.length);\n computeDerivatives(eventT, y, yDot);\n resetOccurred = true;\n+ for (final EventState remaining : occuringEvents) {\n+ remaining.stepAccepted(eventT, eventY);\n+ }\n return eventT;\n }\n \n", + "failingTests": [ + { + "className": " org.apache.commons.math.ode.events.EventStateTest", + "error": "junit.framework.AssertionFailedError", + "message": "going backard in time! (7.796578226186635 < 10.99)", + "methodName": "testIssue695" + } + ], + "metrics": { + "chunks": 3, + "classes": 1, + "files": 1, + "linesAdd": 6, + "linesMod": 0, + "linesRem": 1, + "methods": 1, + "sizeInLines": 7, + "spreadAllLines": 62, + "spreadCodeOnly": 39 + }, + "observations": "The variable and assignment adding are part of the for loop.", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignAdd", + "assignRem", + "loopAdd", + "mcAdd", + "varAdd" + ], + "repairPatterns": [ + "copyPaste", + "missComp" + ], + "repairTools": [ + "rtDeepRepair", + "rtDynaMoth", + "rtGPFL", + "rtNopol" + ], + "revisionId": "53c8cec5ceb4cd81e3f9b8858814accac83a324e" + }, + { + "bugId": 43, + "changedFiles": { + "org/apache/commons/math/stat/descriptive/SummaryStatistics.java": { + "changes": [ + [ + 158 + ], + [ + 161 + ], + [ + 164 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/stat/descriptive/SummaryStatistics.java\n+++ b/src/main/java/org/apache/commons/math/stat/descriptive/SummaryStatistics.java\n@@ -155,13 +155,13 @@ public void addValue(double value) {\n secondMoment.increment(value);\n // If mean, variance or geomean have been overridden,\n // need to increment these\n- if (!(meanImpl instanceof Mean)) {\n+ if (meanImpl != mean) {\n meanImpl.increment(value);\n }\n- if (!(varianceImpl instanceof Variance)) {\n+ if (varianceImpl != variance) {\n varianceImpl.increment(value);\n }\n- if (!(geoMeanImpl instanceof GeometricMean)) {\n+ if (geoMeanImpl != geoMean) {\n geoMeanImpl.increment(value);\n }\n n++;\n", + "failingTests": [ + { + "className": " org.apache.commons.math.stat.descriptive.SummaryStatisticsTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<2.5> but was:", + "methodName": "testOverrideMeanWithMathClass" + }, + { + "className": " org.apache.commons.math.stat.descriptive.SummaryStatisticsTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<2.213363839400643> but was:", + "methodName": "testOverrideGeoMeanWithMathClass" + }, + { + "className": " org.apache.commons.math.stat.descriptive.SummaryStatisticsTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<1.25> but was:", + "methodName": "testOverrideVarianceWithMathClass" + }, + { + "className": " org.apache.commons.math.stat.descriptive.SynchronizedSummaryStatisticsTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<2.5> but was:", + "methodName": "testOverrideMeanWithMathClass" + }, + { + "className": " org.apache.commons.math.stat.descriptive.SynchronizedSummaryStatisticsTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<2.213363839400643> but was:", + "methodName": "testOverrideGeoMeanWithMathClass" + }, + { + "className": " org.apache.commons.math.stat.descriptive.SynchronizedSummaryStatisticsTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<1.25> but was:", + "methodName": "testOverrideVarianceWithMathClass" + } + ], + "metrics": { + "chunks": 3, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 3, + "linesRem": 0, + "methods": 1, + "sizeInLines": 3, + "spreadAllLines": 4, + "spreadCodeOnly": 4 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "condExpMod" + ], + "repairPatterns": [ + "expLogicMod" + ], + "repairTools": [], + "revisionId": "dcae84b2e8f025e93340307d8bc04d406202c323" + }, + { + "bugId": 47, + "changedFiles": { + "org/apache/commons/math/complex/Complex.java": { + "changes": [ + [ + 256 + ], + [ + 257 + ], + [ + 293 + ] + ], + "inserts": [ + [ + -1 + ], + [ + 99, + 100, + 101, + 102, + 103, + 104, + 105 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/complex/Complex.java\n+++ b/src/main/java/org/apache/commons/math/complex/Complex.java\n@@ -1,87 +1,88 @@\n /*\n * Licensed to the Apache Software Foundation (ASF) under one or more\n * contributor license agreements. See the NOTICE file distributed with\n * this work for additional information regarding copyright ownership.\n * The ASF licenses this file to You under the Apache License, Version 2.0\n * (the \"License\"); you may not use this file except in compliance with\n * the License. You may obtain a copy of the License at\n *\n * http://www.apache.org/licenses/LICENSE-2.0\n *\n * Unless required by applicable law or agreed to in writing, software\n * distributed under the License is distributed on an \"AS IS\" BASIS,\n * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n * See the License for the specific language governing permissions and\n * limitations under the License.\n */\n \n package org.apache.commons.math.complex;\n \n import java.io.Serializable;\n import java.util.ArrayList;\n import java.util.List;\n \n import org.apache.commons.math.FieldElement;\n import org.apache.commons.math.exception.NullArgumentException;\n import org.apache.commons.math.exception.NotPositiveException;\n import org.apache.commons.math.exception.util.LocalizedFormats;\n import org.apache.commons.math.util.MathUtils;\n import org.apache.commons.math.util.FastMath;\n \n /**\n * Representation of a Complex number, i.e. a number which has both a\n * real and imaginary part.\n *
\n * Implementations of arithmetic operations handle {@code NaN} and\n * infinite values according to the rules for {@link java.lang.Double}, i.e.\n * {@link #equals} is an equivalence relation for all instances that have\n * a {@code NaN} in either real or imaginary part, e.g. the following are\n * considered equal:\n *
    \n *
  • {@code 1 + NaNi}
    • \n *
  • {@code NaN + i}
    • \n *
  • {@code NaN + NaNi}
    • \n *
\n * Note that this is in contradiction with the IEEE-754 standard for floating\n * point numbers (according to which the test {@code x == x} must fail if\n * {@code x} is {@code NaN}). The method\n * {@link MathUtils#equals(double,double,int) equals for primitive double} in\n * {@link MathUtils} conforms with IEEE-754 while this class conforms with\n * the standard behavior for Java object types.\n *
\n * Implements Serializable since 2.0\n *\n * @version $Id$\n */\n public class Complex implements FieldElement, Serializable {\n /** The square root of -1. A number representing \"0.0 + 1.0i\" */\n public static final Complex I = new Complex(0.0, 1.0);\n // CHECKSTYLE: stop ConstantName\n /** A complex number representing \"NaN + NaNi\" */\n public static final Complex NaN = new Complex(Double.NaN, Double.NaN);\n // CHECKSTYLE: resume ConstantName\n /** A complex number representing \"+INF + INFi\" */\n public static final Complex INF = new Complex(Double.POSITIVE_INFINITY, Double.POSITIVE_INFINITY);\n /** A complex number representing \"1.0 + 0.0i\" */\n public static final Complex ONE = new Complex(1.0, 0.0);\n /** A complex number representing \"0.0 + 0.0i\" */\n public static final Complex ZERO = new Complex(0.0, 0.0);\n \n /** Serializable version identifier */\n private static final long serialVersionUID = -6195664516687396620L;\n \n /** The imaginary part. */\n private final double imaginary;\n /** The real part. */\n private final double real;\n /** Record whether this complex number is equal to NaN. */\n private final transient boolean isNaN;\n /** Record whether this complex number is infinite. */\n private final transient boolean isInfinite;\n /** Record whether this complex number is zero. */\n+ private final transient boolean isZero;\n \n /**\n * Create a complex number given only the real part.\n *\n * @param real Real part.\n */\n@@ -98,17 +99,18 @@ public Complex(double real) {\n public Complex(double real, double imaginary) {\n this.real = real;\n this.imaginary = imaginary;\n \n isNaN = Double.isNaN(real) || Double.isNaN(imaginary);\n isInfinite = !isNaN &&\n (Double.isInfinite(real) || Double.isInfinite(imaginary));\n+ isZero = real == 0 && imaginary == 0;\n }\n \n /**\n * Return the absolute value of this complex number.\n * Returns {@code NaN} if either real or imaginary part is {@code NaN}\n * and {@code Double.POSITIVE_INFINITY} if neither part is {@code NaN},\n * but at least one part is infinite.\n *\n * @return the absolute value.\n */\n@@ -249,60 +251,60 @@ public Complex conjugate() {\n public Complex divide(Complex divisor)\n throws NullArgumentException {\n MathUtils.checkNotNull(divisor);\n if (isNaN || divisor.isNaN) {\n return NaN;\n }\n \n- if (divisor.getReal() == 0.0 && divisor.getImaginary() == 0.0) {\n- return NaN;\n+ if (divisor.isZero) {\n+ return isZero ? NaN : INF;\n }\n \n if (divisor.isInfinite() && !isInfinite()) {\n return ZERO;\n }\n \n final double c = divisor.getReal();\n final double d = divisor.getImaginary();\n \n if (FastMath.abs(c) < FastMath.abs(d)) {\n double q = c / d;\n double denominator = c * q + d;\n return createComplex((real * q + imaginary) / denominator,\n (imaginary * q - real) / denominator);\n } else {\n double q = d / c;\n double denominator = d * q + c;\n return createComplex((imaginary * q + real) / denominator,\n (imaginary - real * q) / denominator);\n }\n }\n \n /**\n * Returns a {@code Complex} whose value is {@code (this / divisor)},\n * with {@code divisor} interpreted as a real number.\n *\n * @param divisor Value by which this {@code Complex} is to be divided.\n * @return {@code this / divisor}.\n * @see #divide(Complex)\n */\n public Complex divide(double divisor) {\n if (isNaN || Double.isNaN(divisor)) {\n return NaN;\n }\n if (divisor == 0d) {\n- return NaN;\n+ return isZero ? NaN : INF;\n }\n if (Double.isInfinite(divisor)) {\n return !isInfinite() ? ZERO : NaN;\n }\n return createComplex(real / divisor,\n imaginary / divisor);\n }\n \n /**\n * Test for the equality of two Complex objects.\n * If both the real and imaginary parts of two complex numbers\n * are exactly the same, and neither is {@code Double.NaN}, the two\n * Complex objects are considered to be equal.\n * All {@code NaN} values are considered to be equal - i.e, if either\n * (or both) real and imaginary parts of the complex number are equal\n", + "failingTests": [ + { + "className": " org.apache.commons.math.complex.ComplexTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testAtanI" + }, + { + "className": " org.apache.commons.math.complex.ComplexTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<(NaN, NaN)> but was:<(Infinity, Infinity)>", + "methodName": "testDivideZero" + } + ], + "metrics": { + "chunks": 4, + "classes": 1, + "files": 1, + "linesAdd": 2, + "linesMod": 3, + "linesRem": 0, + "methods": 1, + "sizeInLines": 5, + "spreadAllLines": 209, + "spreadCodeOnly": 80 + }, + "observations": "The \"WrapWith\" condition is in the form \"exp?a:b\". The added variable is a class attribute.", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignAdd", + "condBranIfElseAdd", + "condExpMod", + "retExpChange", + "varAdd" + ], + "repairPatterns": [ + "copyPaste", + "expLogicMod", + "wrapsIfElse", + "wrongComp" + ], + "repairTools": [], + "revisionId": "330f3fe17d132bd4e2a91ff812ccf489e77f390f" + }, + { + "bugId": 48, + "changedFiles": { + "org/apache/commons/math/analysis/solvers/BaseSecantSolver.java": { + "inserts": [ + [ + 187, + 188, + 189 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/analysis/solvers/BaseSecantSolver.java\n+++ b/src/main/java/org/apache/commons/math/analysis/solvers/BaseSecantSolver.java\n@@ -186,6 +186,9 @@ protected final double doSolve() {\n case REGULA_FALSI:\n // Detect early that algorithm is stuck, instead of waiting\n // for the maximum number of iterations to be exceeded.\n+ if (x == x1) {\n+ throw new ConvergenceException();\n+ }\n break;\n default:\n // Should never happen.\n", + "failingTests": [ + { + "className": " org.apache.commons.math.analysis.solvers.RegulaFalsiSolverTest", + "error": "java.lang.Exception", + "message": "Unexpected exception, expected but was", + "methodName": "testIssue631" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 3, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 3, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "condBranIfAdd", + "exThrowsAdd", + "objInstAdd" + ], + "repairPatterns": [ + "condBlockExcAdd" + ], + "repairTools": [], + "revisionId": "13d22f45624470ce5c07c085cf8b1ec0251eaee6" + }, + { + "bugId": 50, + "changedFiles": { + "org/apache/commons/math/analysis/solvers/BaseSecantSolver.java": { + "deletes": [ + [ + 187 + ], + [ + 188 + ], + [ + 189 + ], + [ + 190 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/analysis/solvers/BaseSecantSolver.java\n+++ b/src/main/java/org/apache/commons/math/analysis/solvers/BaseSecantSolver.java\n@@ -184,10 +184,6 @@ protected final double doSolve() {\n break;\n case REGULA_FALSI:\n // Nothing.\n- if (x == x1) {\n- x0 = 0.5 * (x0 + x1 - FastMath.max(rtol * FastMath.abs(x1), atol));\n- f0 = computeObjectiveValue(x0);\n- }\n break;\n default:\n // Should never happen.\n", + "failingTests": [ + { + "className": " org.apache.commons.math.analysis.solvers.RegulaFalsiSolverTest", + "error": "junit.framework.AssertionFailedError", + "message": "Expected exception: org.apache.commons.math.exception.TooManyEvaluationsException", + "methodName": "testIssue631" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 0, + "linesRem": 4, + "methods": 1, + "sizeInLines": 4, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignRem", + "condBranRem", + "mcRem" + ], + "repairPatterns": [ + "condBlockRem" + ], + "repairTools": [ + "rtCardumen", + "rtDeepRepair", + "rtDynaMoth", + "rtElixir", + "rtGPFL", + "rtGenProg", + "rtHDRepair", + "rtJAID", + "rtKali", + "rtNopol", + "rtssFix" + ], + "revisionId": "39cf5e69259d7560d50553caf028f9229b721013" + }, + { + "bugId": 49, + "changedFiles": { + "org/apache/commons/math/linear/OpenMapRealVector.java": { + "changes": [ + [ + 345 + ], + [ + 358 + ], + [ + 370 + ], + [ + 383 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/linear/OpenMapRealVector.java\n+++ b/src/main/java/org/apache/commons/math/linear/OpenMapRealVector.java\n@@ -342,7 +342,7 @@ public double dotProduct(RealVector v) {\n public OpenMapRealVector ebeDivide(RealVector v) {\n checkVectorDimensions(v.getDimension());\n OpenMapRealVector res = new OpenMapRealVector(this);\n- Iterator iter = res.entries.iterator();\n+ Iterator iter = entries.iterator();\n while (iter.hasNext()) {\n iter.advance();\n res.setEntry(iter.key(), iter.value() / v.getEntry(iter.key()));\n@@ -355,7 +355,7 @@ public OpenMapRealVector ebeDivide(RealVector v) {\n public OpenMapRealVector ebeDivide(double[] v) {\n checkVectorDimensions(v.length);\n OpenMapRealVector res = new OpenMapRealVector(this);\n- Iterator iter = res.entries.iterator();\n+ Iterator iter = entries.iterator();\n while (iter.hasNext()) {\n iter.advance();\n res.setEntry(iter.key(), iter.value() / v[iter.key()]);\n@@ -367,7 +367,7 @@ public OpenMapRealVector ebeDivide(double[] v) {\n public OpenMapRealVector ebeMultiply(RealVector v) {\n checkVectorDimensions(v.getDimension());\n OpenMapRealVector res = new OpenMapRealVector(this);\n- Iterator iter = res.entries.iterator();\n+ Iterator iter = entries.iterator();\n while (iter.hasNext()) {\n iter.advance();\n res.setEntry(iter.key(), iter.value() * v.getEntry(iter.key()));\n@@ -380,7 +380,7 @@ public OpenMapRealVector ebeMultiply(RealVector v) {\n public OpenMapRealVector ebeMultiply(double[] v) {\n checkVectorDimensions(v.length);\n OpenMapRealVector res = new OpenMapRealVector(this);\n- Iterator iter = res.entries.iterator();\n+ Iterator iter = entries.iterator();\n while (iter.hasNext()) {\n iter.advance();\n res.setEntry(iter.key(), iter.value() * v[iter.key()]);\n", + "failingTests": [ + { + "className": " org.apache.commons.math.linear.SparseRealVectorTest", + "error": "org.apache.commons.math.MathRuntimeException$6", + "message": "map has been modified while iterating", + "methodName": "testConcurrentModification" + } + ], + "metrics": { + "chunks": 4, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 4, + "linesRem": 0, + "methods": 4, + "sizeInLines": 4, + "spreadAllLines": 35, + "spreadCodeOnly": 29 + }, + "observations": "Changed the target of a iterator access.", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignExpChange", + "varReplVar" + ], + "repairPatterns": [ + "copyPaste", + "wrongVarRef" + ], + "repairTools": [ + "rtCardumen", + "rtDeepRepair", + "rtDynaMoth", + "rtGPFL", + "rtGenProg", + "rtKali", + "rtNopol" + ], + "revisionId": "09e35881f1ad74335707e70aa78fd347e37d1066" + }, + { + "bugId": 46, + "changedFiles": { + "org/apache/commons/math/complex/Complex.java": { + "changes": [ + [ + 260 + ], + [ + 297 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/complex/Complex.java\n+++ b/src/main/java/org/apache/commons/math/complex/Complex.java\n@@ -257,7 +257,7 @@ public Complex divide(Complex divisor)\n \n if (divisor.isZero) {\n // return isZero ? NaN : INF; // See MATH-657\n- return isZero ? NaN : INF;\n+ return NaN;\n }\n \n if (divisor.isInfinite() && !isInfinite()) {\n@@ -294,7 +294,7 @@ public Complex divide(double divisor) {\n }\n if (divisor == 0d) {\n // return isZero ? NaN : INF; // See MATH-657\n- return isZero ? NaN : INF;\n+ return NaN;\n }\n if (Double.isInfinite(divisor)) {\n return !isInfinite() ? ZERO : NaN;\n", + "failingTests": [ + { + "className": " org.apache.commons.math.complex.ComplexTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testAtanI" + }, + { + "className": " org.apache.commons.math.complex.ComplexTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<(Infinity, Infinity)> but was:<(NaN, NaN)>", + "methodName": "testDivideZero" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 2, + "linesRem": 0, + "methods": 1, + "sizeInLines": 2, + "spreadAllLines": 36, + "spreadCodeOnly": 23 + }, + "observations": "The removed if-else condition is in the form \"exp?a:b\".", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "condBranRem", + "retExpChange" + ], + "repairPatterns": [ + "copyPaste", + "unwrapIfElse" + ], + "repairTools": [ + "rtCardumen", + "rtDynaMoth" + ], + "revisionId": "e6f27ebcb9ee0a344308382b99a3894bb61b225d" + }, + { + "bugId": 45, + "changedFiles": { + "org/apache/commons/math/linear/OpenMapRealMatrix.java": { + "inserts": [ + [ + 50 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/linear/OpenMapRealMatrix.java\n+++ b/src/main/java/org/apache/commons/math/linear/OpenMapRealMatrix.java\n@@ -47,6 +47,11 @@\n */\n public OpenMapRealMatrix(int rowDimension, int columnDimension) {\n super(rowDimension, columnDimension);\n+ long lRow = (long) rowDimension;\n+ long lCol = (long) columnDimension;\n+ if (lRow * lCol >= (long) Integer.MAX_VALUE) {\n+ throw new NumberIsTooLargeException(lRow * lCol, Integer.MAX_VALUE, false);\n+ }\n this.rows = rowDimension;\n this.columns = columnDimension;\n this.entries = new OpenIntToDoubleHashMap(0.0);\n", + "failingTests": [ + { + "className": " org.apache.commons.math.linear.OpenMapRealMatrixTest", + "error": "junit.framework.AssertionFailedError", + "message": "Expected exception: org.apache.commons.math.exception.NumberIsTooLargeException", + "methodName": "testMath679" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 5, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 5, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignAdd", + "condBranIfAdd", + "exThrowsAdd", + "objInstAdd", + "varAdd" + ], + "repairPatterns": [ + "condBlockExcAdd" + ], + "repairTools": [], + "revisionId": "bc4e9db01c2a03062965fa4bac65782376ab2287" + }, + { + "bugId": 51, + "changedFiles": { + "org/apache/commons/math/analysis/solvers/BaseSecantSolver.java": { + "inserts": [ + [ + 179, + 182, + 185, + 186, + 187 + ], + [ + 188, + 189 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/analysis/solvers/BaseSecantSolver.java\n+++ b/src/main/java/org/apache/commons/math/analysis/solvers/BaseSecantSolver.java\n@@ -182,10 +182,19 @@ protected final double doSolve() {\n case PEGASUS:\n f0 *= f1 / (f1 + fx);\n break;\n+ case REGULA_FALSI:\n+ if (x == x1) {\n+ final double delta = FastMath.max(rtol * FastMath.abs(x1),\n+ atol);\n // Update formula cannot make any progress: Update the\n // search interval.\n+ x0 = 0.5 * (x0 + x1 - delta);\n+ f0 = computeObjectiveValue(x0);\n+ }\n+ break;\n default:\n // Should never happen.\n+ throw new MathInternalError();\n }\n }\n // Update from [x0, x1] to [x0, x].\n", + "failingTests": [ + { + "className": " org.apache.commons.math.analysis.solvers.RegulaFalsiSolverTest", + "error": "org.apache.commons.math.exception.TooManyEvaluationsException", + "message": "illegal state: maximal count (3,624) exceeded: evaluations", + "methodName": "testIssue631" + } + ], + "metrics": { + "chunks": 3, + "classes": 1, + "files": 1, + "linesAdd": 9, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 9, + "spreadAllLines": 4, + "spreadCodeOnly": 1 + }, + "observations": "Adds an exception throw in default clause of switch-case.", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignAdd", + "condBranCaseAdd", + "condBranIfAdd", + "exThrowsAdd", + "mcAdd", + "objInstAdd", + "varAdd" + ], + "repairPatterns": [ + "condBlockOthersAdd" + ], + "repairTools": [], + "revisionId": "2f066a5b2d2fe8a00a251a3220b0d52446fe392d" + }, + { + "bugId": 58, + "changedFiles": { + "org/apache/commons/math/optimization/fitting/GaussianFitter.java": { + "changes": [ + [ + 121 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/optimization/fitting/GaussianFitter.java\n+++ b/src/main/java/org/apache/commons/math/optimization/fitting/GaussianFitter.java\n@@ -118,7 +118,7 @@ public double value(double x, double[] p) {\n */\n public double[] fit() {\n final double[] guess = (new ParameterGuesser(getObservations())).guess();\n- return fit(new Gaussian.Parametric(), guess);\n+ return fit(guess);\n }\n \n /**\n", + "failingTests": [ + { + "className": " org.apache.commons.math.optimization.fitting.GaussianFitterTest", + "error": "org.apache.commons.math.exception.NotStrictlyPositiveException", + "message": "-1.277 is smaller than, or equal to, the minimum (0)", + "methodName": "testMath519" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Call overloaded method without one parameter.", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "mcParRem", + "mcRepl", + "objInstRem", + "retExpChange" + ], + "repairPatterns": [ + "singleLine", + "wrongMethodRef" + ], + "repairTools": [ + "rtCardumen", + "rtDeepRepair", + "rtDynaMoth", + "rtElixir", + "rtNopol", + "rtssFix" + ], + "revisionId": "45add3a0e7e2e94bfc29e85c9ef0856e2e473a33" + }, + { + "bugId": 59, + "changedFiles": { + "org/apache/commons/math/util/FastMath.java": { + "changes": [ + [ + 3482 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/util/FastMath.java\n+++ b/src/main/java/org/apache/commons/math/util/FastMath.java\n@@ -3479,7 +3479,7 @@ public static long max(final long a, final long b) {\n * @return b if a is lesser or equal to b, a otherwise\n */\n public static float max(final float a, final float b) {\n- return (a <= b) ? b : (Float.isNaN(a + b) ? Float.NaN : b);\n+ return (a <= b) ? b : (Float.isNaN(a + b) ? Float.NaN : a);\n }\n \n /** Compute the maximum of two values\n", + "failingTests": [ + { + "className": " org.apache.commons.math.util.FastMathTest", + "error": "junit.framework.AssertionFailedError", + "message": "max(50.0, -50.0) expected:<50.0> but was:<-50.0>", + "methodName": "testMinMaxFloat" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "retExpChange", + "varReplVar" + ], + "repairPatterns": [ + "singleLine", + "wrongVarRef" + ], + "repairTools": [ + "rtElixir" + ], + "revisionId": "5dcca48038fb6274cc155251d09db12746ccce71" + }, + { + "bugId": 57, + "changedFiles": { + "org/apache/commons/math/stat/clustering/KMeansPlusPlusClusterer.java": { + "changes": [ + [ + 175 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/stat/clustering/KMeansPlusPlusClusterer.java\n+++ b/src/main/java/org/apache/commons/math/stat/clustering/KMeansPlusPlusClusterer.java\n@@ -172,7 +172,7 @@ public KMeansPlusPlusClusterer(final Random random, final EmptyClusterStrategy e\n while (resultSet.size() < k) {\n // For each data point x, compute D(x), the distance between x and\n // the nearest center that has already been chosen.\n- int sum = 0;\n+ double sum = 0;\n for (int i = 0; i < pointSet.size(); i++) {\n final T p = pointSet.get(i);\n final Cluster nearest = getNearestCluster(resultSet, p);\n", + "failingTests": [ + { + "className": " org.apache.commons.math.stat.clustering.KMeansPlusPlusClustererTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testSmallDistances" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Just changed the declared type of a primitive variable.", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "varTyChange" + ], + "repairPatterns": [ + "singleLine" + ], + "repairTools": [ + "rtCardumen", + "rtDeepRepair", + "rtDynaMoth", + "rtElixir", + "rtNopol", + "rtssFix" + ], + "revisionId": "00fea9d8078d487e31cec8292dbd9bd69bc9c216" + }, + { + "bugId": 53, + "changedFiles": { + "org/apache/commons/math/complex/Complex.java": { + "inserts": [ + [ + 153 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/complex/Complex.java\n+++ b/src/main/java/org/apache/commons/math/complex/Complex.java\n@@ -150,6 +150,9 @@ public double abs() {\n public Complex add(Complex rhs)\n throws NullArgumentException {\n MathUtils.checkNotNull(rhs);\n+ if (isNaN || rhs.isNaN) {\n+ return NaN;\n+ }\n return createComplex(real + rhs.getReal(),\n imaginary + rhs.getImaginary());\n }\n", + "failingTests": [ + { + "className": " org.apache.commons.math.complex.ComplexTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testAddNaN" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 3, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 3, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "condBranIfAdd", + "retBranchAdd" + ], + "repairPatterns": [ + "condBlockRetAdd" + ], + "repairTools": [ + "rtDeepRepair", + "rtGPFL", + "rtGenProg", + "rtHDRepair", + "rtJAID", + "rtssFix" + ], + "revisionId": "7707b0bb80be05bbf6533a36bb0c646cbfd1026d" + }, + { + "bugId": 61, + "changedFiles": { + "org/apache/commons/math/distribution/PoissonDistributionImpl.java": { + "changes": [ + [ + 22 + ], + [ + 94 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/distribution/PoissonDistributionImpl.java\n+++ b/src/main/java/org/apache/commons/math/distribution/PoissonDistributionImpl.java\n@@ -19,7 +19,7 @@\n import java.io.Serializable;\n \n import org.apache.commons.math.MathException;\n-import org.apache.commons.math.MathRuntimeException;\n+import org.apache.commons.math.exception.NotStrictlyPositiveException;\n import org.apache.commons.math.exception.util.LocalizedFormats;\n import org.apache.commons.math.special.Gamma;\n import org.apache.commons.math.util.MathUtils;\n@@ -91,7 +91,7 @@ public PoissonDistributionImpl(double p) {\n */\n public PoissonDistributionImpl(double p, double epsilon, int maxIterations) {\n if (p <= 0) {\n- throw MathRuntimeException.createIllegalArgumentException(LocalizedFormats.NOT_POSITIVE_POISSON_MEAN, p);\n+ throw new NotStrictlyPositiveException(LocalizedFormats.MEAN, p);\n }\n mean = p;\n normal = new NormalDistributionImpl(p, FastMath.sqrt(p));\n", + "failingTests": [ + { + "className": " org.apache.commons.math.distribution.PoissonDistributionTest", + "error": "org.apache.commons.math.MathRuntimeException$4", + "message": "the Poisson mean must be positive (-1)", + "methodName": "testMean" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 2, + "linesRem": 0, + "methods": 1, + "sizeInLines": 2, + "spreadAllLines": 71, + "spreadCodeOnly": 18 + }, + "observations": "Replaces Exception Thrown. Changed the type of exception thrown. Changed the imported type.", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "mcRem", + "objInstAdd" + ], + "repairPatterns": [ + "initFix", + "notClassified" + ], + "repairTools": [ + "rtAcs" + ], + "revisionId": "f76efe5f4ef36fadc677c94269927076f2f42eb9" + }, + { + "bugId": 55, + "changedFiles": { + "org/apache/commons/math/geometry/Vector3D.java": { + "changes": [ + [ + 473 + ] + ], + "inserts": [ + [ + 458, + 459, + 460, + 461, + 462, + 463, + 464, + 465, + 466, + 467, + 468, + 469, + 470, + 471, + 472, + 473 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/geometry/Vector3D.java\n+++ b/src/main/java/org/apache/commons/math/geometry/Vector3D.java\n@@ -456,9 +456,21 @@ public static double dotProduct(Vector3D v1, Vector3D v2) {\n */\n public static Vector3D crossProduct(final Vector3D v1, final Vector3D v2) {\n \n+ final double n1 = v1.getNormSq();\n+ final double n2 = v2.getNormSq();\n+ if ((n1 * n2) < MathUtils.SAFE_MIN) {\n+ return ZERO;\n+ }\n \n // rescale both vectors without losing precision,\n // to ensure their norm are the same order of magnitude\n+ final int deltaExp = (FastMath.getExponent(n1) - FastMath.getExponent(n2)) / 4;\n+ final double x1 = FastMath.scalb(v1.x, -deltaExp);\n+ final double y1 = FastMath.scalb(v1.y, -deltaExp);\n+ final double z1 = FastMath.scalb(v1.z, -deltaExp);\n+ final double x2 = FastMath.scalb(v2.x, deltaExp);\n+ final double y2 = FastMath.scalb(v2.y, deltaExp);\n+ final double z2 = FastMath.scalb(v2.z, deltaExp);\n \n // we reduce cancellation errors by preconditioning,\n // we replace v1 by v3 = v1 - rho v2 with rho chosen in order to compute\n@@ -467,10 +479,15 @@ public static Vector3D crossProduct(final Vector3D v1, final Vector3D v2) {\n // available at http://www.cs.berkeley.edu/~wkahan/MathH110/Cross.pdf\n \n // compute rho as an 8 bits approximation of v1.v2 / v2.v2\n+ final double ratio = (x1 * x2 + y1 * y2 + z1 * z2) / FastMath.scalb(n2, 2 * deltaExp);\n+ final double rho = FastMath.rint(256 * ratio) / 256;\n \n+ final double x3 = x1 - rho * x2;\n+ final double y3 = y1 - rho * y2;\n+ final double z3 = z1 - rho * z2;\n \n // compute cross product from v3 and v2 instead of v1 and v2\n- return new Vector3D(v1.y * v2.z - v1.z * v2.y, v1.z * v2.x - v1.x * v2.z, v1.x * v2.y - v1.y * v2.x);\n+ return new Vector3D(y3 * z2 - z3 * y2, z3 * x2 - x3 * z2, x3 * y2 - y3 * x2);\n \n }\n \n", + "failingTests": [ + { + "className": " org.apache.commons.math.geometry.Vector3DTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<1.0> but was:<0.0>", + "methodName": "testCrossProductCancellation" + } + ], + "metrics": { + "chunks": 5, + "classes": 1, + "files": 1, + "linesAdd": 17, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 18, + "spreadAllLines": 14, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignAdd", + "condBranIfAdd", + 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standardDeviation) { \n+ return dev < 0 ? 0.0d : 1.0d;\n+ }\n return 0.5 * (1.0 + Erf.erf((dev) /\n (standardDeviation * FastMath.sqrt(2.0))));\n- } catch (MaxIterationsExceededException ex) {\n- if (x < (mean - 20 * standardDeviation)) { // JDK 1.5 blows at 38\n- return 0;\n- } else if (x > (mean + 20 * standardDeviation)) {\n- return 1;\n- } else {\n- throw ex;\n- }\n- }\n }\n \n /**\n", + "failingTests": [ + { + "className": " org.apache.commons.math.distribution.NormalDistributionTest", + "error": "org.apache.commons.math.ConvergenceException", + "message": "Continued fraction diverged to NaN for value ∞", + "methodName": "testExtremeValues" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 2, + "linesMod": 1, + "linesRem": 9, + "methods": 1, + "sizeInLines": 12, + "spreadAllLines": 2, + "spreadCodeOnly": 2 + }, + "observations": "Unwraps try-catch.", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "condBranIfAdd", + 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{\n+ int cmp0 = compare(this, getZero());\n+ if (cmp0 == 0) {\n+ return sign < 0 ? -0.0 : +0.0;\n+ } else if (cmp0 < 0) {\n y = negate();\n negate = true;\n }\n", + "failingTests": [ + { + "className": " org.apache.commons.math.dfp.DfpTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<0.0> but was:<-Infinity>", + "methodName": "testIssue567" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 6, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 7, + "spreadAllLines": 2046, + "spreadCodeOnly": 1332 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignAdd", + "condBranIfAdd", + "condBranIfElseAdd", + "condExpMod", + "mcAdd", + "retBranchAdd", + "varAdd" + ], + "repairPatterns": [ + "condBlockOthersAdd", + "wrapsIfElse" + ], + "repairTools": [], + "revisionId": "c00ac8120a4215125e49775cd9351e689586b467" + }, + { + "bugId": 56, + "changedFiles": { + "org/apache/commons/math/util/MultidimensionalCounter.java": { + "changes": [ + [ + 243 + ] + ], + "deletes": [ + [ + 237 + ], + [ + 238 + ], + [ + 239 + ], + [ + 240 + ], + [ + 241 + ], + [ + 242 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/util/MultidimensionalCounter.java\n+++ b/src/main/java/org/apache/commons/math/util/MultidimensionalCounter.java\n@@ -234,13 +234,7 @@ public int getDimension() {\n indices[i] = idx;\n }\n \n- int idx = 1;\n- while (count < index) {\n- count += idx;\n- ++idx;\n- }\n- --idx;\n- indices[last] = idx;\n+ indices[last] = index - count;\n \n return indices;\n }\n", + "failingTests": [ + { + "className": " org.apache.commons.math.util.MultidimensionalCounterTest", + "error": "junit.framework.AssertionFailedError", + "message": "Wrong multidimensional index for [3][2] expected:<3> but was:<2>", + "methodName": "testIterationConsistency" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 6, + "methods": 1, + "sizeInLines": 7, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Replaces a wrong and more complex calculation by the correct and simpler one.", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignExpChange", + "assignRem", + "loopRem", + "varRem" + ], + "repairPatterns": [ + "blockRemove", + "expArithMod", + "wrongComp" + ], + "repairTools": [ + "rtDeepRepair", + "rtGPFL" + ], + "revisionId": "e06fe05e2dd68936e770ba67caa7b9924568170d" + }, + { + "bugId": 52, + "changedFiles": { + "org/apache/commons/math/geometry/euclidean/threed/Rotation.java": { + "changes": [ + [ + 344 + ], + [ + 353 + ], + [ + 359 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/geometry/euclidean/threed/Rotation.java\n+++ b/src/main/java/org/apache/commons/math/geometry/euclidean/threed/Rotation.java\n@@ -341,7 +341,8 @@ public Rotation(Vector3D u1, Vector3D u2, Vector3D v1, Vector3D v2) {\n Vector3D k = v1Su1.crossProduct(v2Su2);\n Vector3D u3 = u1.crossProduct(u2);\n double c = k.dotProduct(u3);\n- if (c == 0) {\n+ final double inPlaneThreshold = 0.001;\n+ if (c <= inPlaneThreshold * k.getNorm() * u3.getNorm()) {\n // the (q1, q2, q3) vector is close to the (u1, u2) plane\n // we try other vectors\n Vector3D v3 = Vector3D.crossProduct(v1, v2);\n@@ -350,13 +351,13 @@ public Rotation(Vector3D u1, Vector3D u2, Vector3D v1, Vector3D v2) {\n Vector3D u2Prime = u1.crossProduct(u3);\n c = k.dotProduct(u2Prime);\n \n- if (c == 0) {\n+ if (c <= inPlaneThreshold * k.getNorm() * u2Prime.getNorm()) {\n // the (q1, q2, q3) vector is also close to the (u1, u3) plane,\n // it is almost aligned with u1: we try (u2, u3) and (v2, v3)\n k = v2Su2.crossProduct(v3Su3);;\n c = k.dotProduct(u2.crossProduct(u3));;\n \n- if (c == 0) {\n+ if (c <= 0) {\n // the (q1, q2, q3) vector is aligned with everything\n // this is really the identity rotation\n q0 = 1.0;\n", + "failingTests": [ + { + "className": " org.apache.commons.math.geometry.euclidean.threed.RotationTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<0.6228370359608201> but was:", + "methodName": "testIssue639" + } + ], + "metrics": { + "chunks": 3, + "classes": 1, + "files": 1, + "linesAdd": 1, + "linesMod": 3, + "linesRem": 0, + "methods": 1, + "sizeInLines": 4, + "spreadAllLines": 13, + "spreadCodeOnly": 7 + }, + "observations": "New variable is added with its initialization.", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignAdd", + "condExpMod", + "mcAdd", + "varAdd" + ], + "repairPatterns": [ + "expLogicMod", + "initFix" + ], + "repairTools": [], + "revisionId": "3c319db494928e9d51ea6091b301302c65f4eceb" + }, + { + "bugId": 63, + "changedFiles": { + "org/apache/commons/math/util/MathUtils.java": { + "changes": [ + [ + 417 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/util/MathUtils.java\n+++ b/src/main/java/org/apache/commons/math/util/MathUtils.java\n@@ -414,7 +414,7 @@ public static double cosh(double x) {\n * @return {@code true} if the values are equal.\n */\n public static boolean equals(double x, double y) {\n- return (Double.isNaN(x) && Double.isNaN(y)) || x == y;\n+ return equals(x, y, 1);\n }\n \n /**\n", + "failingTests": [ + { + "className": " org.apache.commons.math.util.MathUtilsTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testArrayEquals" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "mcAdd", + "mcRem", + "retExpChange" + ], + "repairPatterns": [ + "expLogicMod", + "singleLine" + ], + "repairTools": [ + "rtCardumen", + "rtDeepRepair", + "rtElixir" + ], + "revisionId": "d2a5bc02c002acfa220ce8bad23b9e8af137f47d" + }, + { + "bugId": 62, + "changedFiles": { + "org/apache/commons/math/optimization/univariate/MultiStartUnivariateRealOptimizer.java": { + "changes": [ + [ + 146 + ], + [ + 160 + ], + [ + 161 + ], + [ + 162 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/optimization/univariate/MultiStartUnivariateRealOptimizer.java\n+++ b/src/main/java/org/apache/commons/math/optimization/univariate/MultiStartUnivariateRealOptimizer.java\n@@ -143,7 +143,7 @@ public UnivariateRealPointValuePair optimize(final FUNC f,\n final GoalType goal,\n final double min, final double max)\n throws FunctionEvaluationException {\n- return optimize(f, goal, min, max, 0);\n+ return optimize(f, goal, min, max, min + 0.5 * (max - min));\n }\n \n /** {@inheritDoc} */\n@@ -157,9 +157,8 @@ public UnivariateRealPointValuePair optimize(final FUNC f, final GoalType goal,\n // Multi-start loop.\n for (int i = 0; i < starts; ++i) {\n try {\n- final double bound1 = (i == 0) ? min : min + generator.nextDouble() * (max - min);\n- final double bound2 = (i == 0) ? max : min + generator.nextDouble() * (max - min);\n- optima[i] = optimizer.optimize(f, goal, FastMath.min(bound1, bound2), FastMath.max(bound1, bound2));\n+ final double s = (i == 0) ? startValue : min + generator.nextDouble() * (max - min);\n+ optima[i] = optimizer.optimize(f, goal, min, max, s);\n } catch (FunctionEvaluationException fee) {\n optima[i] = null;\n } catch (ConvergenceException ce) {\n", + "failingTests": [ + { + "className": " org.apache.commons.math.optimization.univariate.MultiStartUnivariateRealOptimizerTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<-0.2719561293> but was:<-0.2719561278056452>", + "methodName": "testQuinticMin" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 3, + "linesRem": 1, + "methods": 1, + "sizeInLines": 4, + "spreadAllLines": 13, + "spreadCodeOnly": 9 + }, + "observations": "Changes the way to compute \"optima[i]\", changing params for call to \"optimize\". Removed if-branch is in the form \"exp?a:b\".", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignAdd", + "assignExpChange", + "assignRem", + "condBranIfElseAdd", + "condBranRem", + "mcAdd", + "mcParAdd", + "mcParValChange", + "mcRem", + "mcRepl", + "retExpChange", + "varAdd", + "varRem" + ], + "repairPatterns": [ + "expArithMod", + "wrongComp", + "wrongMethodRef" + ], + "repairTools": [ + "rtCardumen" + ], + "revisionId": "8de3eb542b2be80ba309b2c91ae1dba75bdb5063" + }, + { + "bugId": 66, + "changedFiles": { + "org/apache/commons/math/optimization/univariate/BrentOptimizer.java": { + "changes": [ + [ + 44 + ], + [ + 46 + ], + [ + 47 + ], + [ + 57 + ], + [ + 93 + ], + [ + 94 + ], + [ + 95 + ], + [ + 96 + ], + [ + 97 + ], + [ + 119 + ], + [ + 120 + ], + [ + 126 + ], + [ + 127 + ], + [ + 200 + ], + [ + 201 + ], + [ + 238 + ], + [ + 241 + ] + ], + "deletes": [ + [ + 59 + ], + [ + 60 + ], + [ + 61 + ], + [ + 62 + ], + [ + 63 + ], + [ + 64 + ], + [ + 65 + ], + [ + 66 + ], + [ + 67 + ], + [ + 243 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/optimization/univariate/BrentOptimizer.java\n+++ b/src/main/java/org/apache/commons/math/optimization/univariate/BrentOptimizer.java\n@@ -41,10 +41,10 @@\n * Construct a solver.\n */\n public BrentOptimizer() {\n- setMaxEvaluations(Integer.MAX_VALUE);\n+ setMaxEvaluations(1000);\n setMaximalIterationCount(100);\n- setAbsoluteAccuracy(1E-10);\n- setRelativeAccuracy(1.0e-14);\n+ setAbsoluteAccuracy(1e-11);\n+ setRelativeAccuracy(1e-9);\n }\n \n /**\n@@ -54,17 +54,10 @@ public BrentOptimizer() {\n */\n protected double doOptimize()\n throws MaxIterationsExceededException, FunctionEvaluationException {\n- throw new UnsupportedOperationException();\n- }\n- public double optimize(final UnivariateRealFunction f, final GoalType goalType, final double min, final double max, final double startValue) throws MaxIterationsExceededException, FunctionEvaluationException {\n- clearResult();\n return localMin(getGoalType() == GoalType.MINIMIZE,\n- f, goalType, min, startValue, max,\n+ getMin(), getStartValue(), getMax(),\n getRelativeAccuracy(), getAbsoluteAccuracy());\n }\n- public double optimize(final UnivariateRealFunction f, final GoalType goalType, final double min, final double max) throws MaxIterationsExceededException, FunctionEvaluationException {\n- return optimize(f, goalType, min, max, min + GOLDEN_SECTION * (max - min));\n- }\n \n /**\n * Find the minimum of the function within the interval {@code (lo, hi)}.\n@@ -91,8 +84,6 @@ public double optimize(final UnivariateRealFunction f, final GoalType goalType,\n * the function.\n */\n private double localMin(boolean isMinim,\n- UnivariateRealFunction f,\n- GoalType goalType,\n double lo, double mid, double hi,\n double eps, double t)\n throws MaxIterationsExceededException, FunctionEvaluationException {\n@@ -116,15 +107,14 @@ private double localMin(boolean isMinim,\n double w = x;\n double d = 0;\n double e = 0;\n- double fx = computeObjectiveValue(f, x);\n- if (goalType == GoalType.MAXIMIZE) {\n+ double fx = computeObjectiveValue(x);\n+ if (!isMinim) {\n fx = -fx;\n }\n double fv = fx;\n double fw = fx;\n \n- int count = 0;\n- while (count < maximalIterationCount) {\n+ while (true) {\n double m = 0.5 * (a + b);\n final double tol1 = eps * Math.abs(x) + t;\n final double tol2 = 2 * tol1;\n@@ -197,8 +187,8 @@ private double localMin(boolean isMinim,\n u = x + d;\n }\n \n- double fu = computeObjectiveValue(f, u);\n- if (goalType == GoalType.MAXIMIZE) {\n+ double fu = computeObjectiveValue(u);\n+ if (!isMinim) {\n fu = -fu;\n }\n \n@@ -235,11 +225,10 @@ private double localMin(boolean isMinim,\n }\n }\n } else { // termination\n- setResult(x, (goalType == GoalType.MAXIMIZE) ? -fx : fx, count);\n+ setFunctionValue(isMinim ? fx : -fx);\n return x;\n }\n- ++count;\n+ incrementIterationsCounter();\n }\n- throw new MaxIterationsExceededException(maximalIterationCount);\n }\n }\n", + "failingTests": [ + { + "className": " org.apache.commons.math.optimization.MultiStartUnivariateRealOptimizerTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<-0.2719561270319131> but was:<-0.2719561299044896>", + "methodName": "testQuinticMin" + }, + { + "className": " org.apache.commons.math.optimization.MultiStartUnivariateRealOptimizerTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testSinMin" + }, + { + "className": " org.apache.commons.math.optimization.univariate.BrentOptimizerTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<1880.5> but was:<18.0>", + "methodName": "testQuinticMinStatistics" + }, + { + "className": " org.apache.commons.math.optimization.univariate.BrentOptimizerTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<4.71238898038469> but was:<4.71238897901431>", + "methodName": "testSinMin" + } + ], + "metrics": { + "chunks": 12, + "classes": 1, + 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[ + 244 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/optimization/general/AbstractLeastSquaresOptimizer.java\n+++ b/src/main/java/org/apache/commons/math/optimization/general/AbstractLeastSquaresOptimizer.java\n@@ -239,30 +239,25 @@ protected void updateResidualsAndCost()\n public double getRMS() {\n- double criterion = 0;\n- for (int i = 0; i < rows; ++i) {\n- final double residual = residuals[i];\n- criterion += residual * residual * residualsWeights[i];\n- }\n- return Math.sqrt(criterion / rows);\n+ return Math.sqrt(getChiSquare() / rows);\n }\n \n /**\n * Get a Chi-Square-like value assuming the N residuals follow N\n * distinct normal distributions centered on 0 and whose variances are\n * the reciprocal of the weights.\n * @return chi-square value\n */\n public double getChiSquare() {\n double chiSquare = 0;\n for (int i = 0; i < rows; ++i) {\n final double residual = residuals[i];\n- chiSquare += residual * residual / residualsWeights[i];\n+ chiSquare += residual * residual * residualsWeights[i];\n }\n return chiSquare;\n }\n \n /**\n * Get the covariance matrix of optimized parameters.\n * @return covariance matrix\n * @exception FunctionEvaluationException if the function jacobian cannot\n * be evaluated\n * @exception OptimizationException if the covariance matrix\n", + "failingTests": [ + { + "className": " org.apache.commons.math.optimization.general.LevenbergMarquardtOptimizerTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<0.004> but was:<0.0019737107108948474>", + "methodName": "testCircleFitting" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 2, + "linesRem": 5, + "methods": 1, + "sizeInLines": 7, + "spreadAllLines": 12, + "spreadCodeOnly": 5 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignExpChange", + "assignRem", + "loopRem", + "mcAdd", + "mcParValChange", + "varRem", + "varReplMc" + ], + "repairPatterns": [ + "blockRemove", + "expArithMod", + "wrongVarRef" + ], + "repairTools": [], + "revisionId": "a4f9188a55e6935d4d38ae97806af4d59e671588" + }, + { + "bugId": 64, + "changedFiles": { + "org/apache/commons/math/optimization/general/LevenbergMarquardtOptimizer.java": { + "changes": [ + [ + 278 + ], + [ + 316 + ], + [ + 346 + ] + ], + "deletes": [ + [ + 365 + ], + [ + 442 + ], + [ + 443 + ], + [ + 444 + ], + [ + 445 + ] + ], + "inserts": [ + [ + 243, + 244, + 245, + 246, + 247, + 248, + 249, + 250, + 251, + 252, + 253, + 254, + 255, + 256, + 257, + 258, + 259, + 260, + 261, + 262, + 263 + ], + [ + 270 + ], + [ + 323, + 324 + ], + [ + 344, + 345, + 346 + ], + [ + 421, + 422, + 423, + 424 + ], + [ + 434 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/optimization/general/LevenbergMarquardtOptimizer.java\n+++ b/src/main/java/org/apache/commons/math/optimization/general/LevenbergMarquardtOptimizer.java\n@@ -255,6 +255,8 @@ protected VectorialPointValuePair doOptimize()\n double[] diag = new double[cols];\n double[] oldX = new double[cols];\n double[] oldRes = new double[rows];\n+ double[] oldObj = new double[rows];\n+ double[] qtf = new double[rows];\n double[] work1 = new double[cols];\n double[] work2 = new double[cols];\n double[] work3 = new double[cols];\n@@ -267,6 +269,9 @@ protected VectorialPointValuePair doOptimize()\n boolean firstIteration = true;\n VectorialPointValuePair current = new VectorialPointValuePair(point, objective);\n while (true) {\n+ for (int i=0;i but was:<0.2578330049004441>", + "methodName": "testMinpackJennrichSampson" + }, + { + "className": " org.apache.commons.math.optimization.general.MinpackTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<11.41300466147456> but was:<11.4121122022341>", + "methodName": "testMinpackFreudensteinRoth" + } + ], + "metrics": { + "chunks": 13, + "classes": 1, + "files": 1, + "linesAdd": 19, + "linesMod": 3, + "linesRem": 5, + "methods": 1, + "sizeInLines": 27, + "spreadAllLines": 180, + "spreadCodeOnly": 131 + }, + "observations": "Moved instantiation of object of type VectorialPointValuePair to another place (lines ahead).", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignAdd", + "assignExpChange", + "condBranIfAdd", + "condBranRem", + "loopAdd", + "mcAdd", + "mcMove", + "mcParValChange", + "mcRem", + "objInstAdd", + "objInstRem", + "retBranchAdd", + "retRem", + "varAdd", + "varReplVar" + ], + "repairPatterns": [ + "blockRemove", + "codeMove", + "condBlockOthersAdd", + "condBlockRem", + "condBlockRetAdd", + "expArithMod", + "missNullCheckN", + "wrongComp", + "wrongVarRef" + ], + "repairTools": [ + "rtDeepRepair" + ], + "revisionId": "7dadc2ab019f066a7a287376ad4c63193e8a0a9a" + }, + { + "bugId": 70, + "changedFiles": { + "org/apache/commons/math/analysis/solvers/BisectionSolver.java": { + "changes": [ + [ + 72 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/analysis/solvers/BisectionSolver.java\n+++ b/src/main/java/org/apache/commons/math/analysis/solvers/BisectionSolver.java\n@@ -69,7 +69,7 @@ public double solve(double min, double max)\n /** {@inheritDoc} */\n public double solve(final UnivariateRealFunction f, double min, double max, double initial)\n throws MaxIterationsExceededException, FunctionEvaluationException {\n- return solve(min, max);\n+ return solve(f, min, max);\n }\n \n /** {@inheritDoc} */\n", + "failingTests": [ + { + "className": " org.apache.commons.math.analysis.solvers.BisectionSolverTest", + "error": "java.lang.NullPointerException", + "message": "", + "methodName": "testMath369" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Call overloaded method without one parameter.", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "mcParAdd", + "mcRepl", + "retExpChange" + ], + "repairPatterns": [ + "singleLine", + "wrongMethodRef" + ], + "repairTools": [ + "rtCardumen", + "rtDeepRepair", + "rtElixir", + "rtGPFL", + "rtGenProg", + "rtHDRepair", + "rtssFix" + ], + "revisionId": "f41fcd85ca62a2109a6e550be0353d292d351213" + }, + { + "bugId": 68, + "changedFiles": { + "org/apache/commons/math/optimization/general/LevenbergMarquardtOptimizer.java": { + "changes": [ + [ + 303 + ], + [ + 419 + ] + ], + "inserts": [ + [ + 164, + 165, + 166, + 167, + 168, + 169, + 170, + 171 + ], + [ + 243, + 244, + 245, + 246, + 247 + ], + [ + 250, + 251, + 252 + ], + [ + 345, + 346, + 347, + 348 + ], + [ + 411, + 412, + 413, + 414, + 415 + ], + [ + 421, + 422, + 423, + 424 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/optimization/general/LevenbergMarquardtOptimizer.java\n+++ b/src/main/java/org/apache/commons/math/optimization/general/LevenbergMarquardtOptimizer.java\n@@ -163,6 +163,7 @@ public LevenbergMarquardtOptimizer() {\n setMaxIterations(1000);\n \n // default values for the tuning parameters\n+ setConvergenceChecker(null);\n setInitialStepBoundFactor(100.0);\n setCostRelativeTolerance(1.0e-10);\n setParRelativeTolerance(1.0e-10);\n@@ -244,11 +245,13 @@ protected VectorialPointValuePair doOptimize()\n // outer loop\n lmPar = 0;\n boolean firstIteration = true;\n+ VectorialPointValuePair current = new VectorialPointValuePair(point, objective);\n while (true) {\n \n incrementIterationsCounter();\n \n // compute the Q.R. decomposition of the jacobian matrix\n+ VectorialPointValuePair previous = current;\n updateJacobian();\n qrDecomposition();\n \n@@ -300,7 +303,7 @@ protected VectorialPointValuePair doOptimize()\n }\n if (maxCosine <= orthoTolerance) {\n // convergence has been reached\n- return new VectorialPointValuePair(point, objective);\n+ return current;\n }\n \n // rescale if necessary\n@@ -342,6 +345,7 @@ protected VectorialPointValuePair doOptimize()\n \n // evaluate the function at x + p and calculate its norm\n updateResidualsAndCost();\n+ current = new VectorialPointValuePair(point, objective);\n \n // compute the scaled actual reduction\n double actRed = -1.0;\n@@ -410,14 +414,20 @@ protected VectorialPointValuePair doOptimize()\n }\n \n // tests for convergence.\n+ if (checker != null) {\n // we use the vectorial convergence checker\n+ if (checker.converged(getIterations(), previous, current)) {\n+ return current; \n+ }\n+ } else {\n // we use the Levenberg-Marquardt specific convergence parameters\n if (((Math.abs(actRed) <= costRelativeTolerance) &&\n (preRed <= costRelativeTolerance) &&\n (ratio <= 2.0)) ||\n (delta <= parRelativeTolerance * xNorm)) {\n- return new VectorialPointValuePair(point, objective);\n+ return current;\n }\n+ }\n \n // tests for termination and stringent tolerances\n // (2.2204e-16 is the machine epsilon for IEEE754)\n", + "failingTests": [ + { + "className": " org.apache.commons.math.optimization.general.MinpackTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<0.2578330049> but was:<0.257819926636807>", + "methodName": "testMinpackJennrichSampson" + }, + { + "className": " org.apache.commons.math.optimization.general.MinpackTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<11.4121122022341> but was:<11.41300466147456>", + "methodName": "testMinpackFreudensteinRoth" + } + ], + "metrics": { + "chunks": 9, + "classes": 1, + "files": 1, + "linesAdd": 10, + "linesMod": 2, + "linesRem": 0, + "methods": 1, + "sizeInLines": 12, + "spreadAllLines": 253, + "spreadCodeOnly": 160 + }, + "observations": "New objects were instantiated. Objects instantiated before were removed too (line 419).", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignAdd", + "condBranIfAdd", + "condBranIfElseAdd", + "mcAdd", + "objInstAdd", + "objInstRem", + "retBranchAdd", + "retExpChange", + "varAdd" + ], + "repairPatterns": [ + "condBlockRetAdd", + "missNullCheckN", + "wrapsIfElse" + ], + "repairTools": [], + "revisionId": "615ca9a000c253575e6f62bed87db6110b750834" + }, + { + "bugId": 69, + "changedFiles": { + "org/apache/commons/math/stat/correlation/PearsonsCorrelation.java": { + "changes": [ + [ + 171 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/stat/correlation/PearsonsCorrelation.java\n+++ b/src/main/java/org/apache/commons/math/stat/correlation/PearsonsCorrelation.java\n@@ -168,7 +168,7 @@ public RealMatrix getCorrelationPValues() throws MathException {\n } else {\n double r = correlationMatrix.getEntry(i, j);\n double t = Math.abs(r * Math.sqrt((nObs - 2)/(1 - r * r)));\n- out[i][j] = 2 * (1 - tDistribution.cumulativeProbability(t));\n+ out[i][j] = 2 * tDistribution.cumulativeProbability(-t);\n }\n }\n }\n", + "failingTests": [ + { + "className": " org.apache.commons.math.stat.correlation.PearsonsCorrelationTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testPValueNearZero" + }, + { + "className": " org.apache.commons.math.stat.correlation.SpearmansRankCorrelationTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testPValueNearZero" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Fix assignment operation.", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignExpChange", + "mcParValChange" + ], + "repairPatterns": [ + "expArithMod", + "singleLine", + "wrongComp" + ], + "repairTools": [ + "rtCardumen", + "rtDynaMoth", + "rtNopol" + ], + "revisionId": "a2711c189d9754c22e3aba2de1c6c125e52626aa" + }, + { + "bugId": 71, + "changedFiles": { + "org/apache/commons/math/ode/nonstiff/EmbeddedRungeKuttaIntegrator.java": { + "inserts": [ + [ + 295, + 296, + 297, + 298, + 299, + 300, + 301 + ] + ] + }, + "org/apache/commons/math/ode/nonstiff/RungeKuttaIntegrator.java": { + "inserts": [ + [ + 175, + 176, + 177, + 178, + 179, + 180, + 181 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/ode/nonstiff/EmbeddedRungeKuttaIntegrator.java\n+++ b/src/main/java/org/apache/commons/math/ode/nonstiff/EmbeddedRungeKuttaIntegrator.java\n@@ -297,6 +297,10 @@ public double integrate(final FirstOrderDifferentialEquations equations,\n // it is so small (much probably exactly 0 due to limited accuracy)\n // that the code above would fail handling it.\n // So we set up an artificial 0 size step by copying states\n+ interpolator.storeTime(stepStart);\n+ System.arraycopy(y, 0, yTmp, 0, y0.length);\n+ hNew = 0;\n+ stepSize = 0;\n loop = false;\n } else {\n // reject the step to match exactly the next switch time\n--- a/src/main/java/org/apache/commons/math/ode/nonstiff/RungeKuttaIntegrator.java\n+++ b/src/main/java/org/apache/commons/math/ode/nonstiff/RungeKuttaIntegrator.java\n@@ -177,6 +177,9 @@ public double integrate(final FirstOrderDifferentialEquations equations,\n // it is so small (much probably exactly 0 due to limited accuracy)\n // that the code above would fail handling it.\n // So we set up an artificial 0 size step by copying states\n+ interpolator.storeTime(stepStart);\n+ System.arraycopy(y, 0, yTmp, 0, y0.length);\n+ stepSize = 0;\n loop = false;\n } else {\n // reject the step to match exactly the next switch time\n", + "failingTests": [ + { + "className": " org.apache.commons.math.ode.nonstiff.ClassicalRungeKuttaIntegratorTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<1.8782503799999986E9> but was:<1.878250439999994E9>", + "methodName": "testMissedEndEvent" + }, + { + "className": " org.apache.commons.math.ode.nonstiff.DormandPrince853IntegratorTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<1.8782503799999986E9> but was:<1.878250479999994E9>", + "methodName": "testMissedEndEvent" + } + ], + "metrics": { + "chunks": 2, + "classes": 2, + "files": 2, + "linesAdd": 7, + "linesMod": 0, + "linesRem": 0, + "methods": 2, + "sizeInLines": 7, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Three lines equal lines are added in two different places. Just line 302 is different.", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignAdd", + "mcAdd" + ], + "repairPatterns": [ + "copyPaste" + ], + "repairTools": [ + "rtDeepRepair", + "rtDynaMoth", + "rtGPFL", + "rtGenProg" + ], + "revisionId": "6537e18ad189603e19615226e6aa1a9cdd154b8f" + }, + { + "bugId": 72, + "changedFiles": { + "org/apache/commons/math/analysis/solvers/BrentSolver.java": { + "changes": [ + [ + 115 + ], + [ + 127 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/analysis/solvers/BrentSolver.java\n+++ b/src/main/java/org/apache/commons/math/analysis/solvers/BrentSolver.java\n@@ -112,7 +112,7 @@ public double solve(final UnivariateRealFunction f,\n // return the first endpoint if it is good enough\n double yMin = f.value(min);\n if (Math.abs(yMin) <= functionValueAccuracy) {\n- setResult(yMin, 0);\n+ setResult(min, 0);\n return result;\n }\n \n@@ -124,7 +124,7 @@ public double solve(final UnivariateRealFunction f,\n // return the second endpoint if it is good enough\n double yMax = f.value(max);\n if (Math.abs(yMax) <= functionValueAccuracy) {\n- setResult(yMax, 0);\n+ setResult(max, 0);\n return result;\n }\n \n", + "failingTests": [ + { + "className": " org.apache.commons.math.analysis.solvers.BrentSolverTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<3.141592653589793> but was:<1.2246467991473532E-16>", + "methodName": "testRootEndpoints" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 2, + "linesRem": 0, + "methods": 1, + "sizeInLines": 2, + "spreadAllLines": 11, + "spreadCodeOnly": 7 + }, + "observations": "Similar changes in two different places, the same melhod is targeted, the same argument is changed, only the new values applied are different.", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "mcParValChange", + "varReplVar" + ], + "repairPatterns": [ + "wrongComp", + "wrongVarRef" + ], + "repairTools": [], + "revisionId": "aa09ac7ca6e01a2ba41470ca590f07f2ada8af6f" + }, + { + "bugId": 67, + "changedFiles": { + "org/apache/commons/math/optimization/MultiStartUnivariateRealOptimizer.java": { + "changes": [ + [ + 92 + ], + [ + 97 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/optimization/MultiStartUnivariateRealOptimizer.java\n+++ b/src/main/java/org/apache/commons/math/optimization/MultiStartUnivariateRealOptimizer.java\n@@ -89,12 +89,12 @@ public MultiStartUnivariateRealOptimizer(final UnivariateRealOptimizer optimizer\n \n /** {@inheritDoc} */\n public double getFunctionValue() {\n- return optimizer.getFunctionValue();\n+ return optimaValues[0];\n }\n \n /** {@inheritDoc} */\n public double getResult() {\n- return optimizer.getResult();\n+ return optima[0];\n }\n \n /** {@inheritDoc} */\n", + "failingTests": [ + { + "className": " org.apache.commons.math.optimization.MultiStartUnivariateRealOptimizerTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<-0.27195612846834> but was:<-0.27194301946870036>", + "methodName": "testQuinticMin" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 2, + "linesRem": 0, + "methods": 2, + "sizeInLines": 2, + "spreadAllLines": 4, + "spreadCodeOnly": 2 + }, + "observations": "A direct access to a vector was added in place of a value returned from a call to an object method. The change was similar in structure in two different places.", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "mcRem", + "retExpChange" + ], + "repairPatterns": [ + "wrongMethodRef" + ], + "repairTools": [], + "revisionId": "fc505bba569dede0d29a401798fa9f55df9e27f1" + }, + { + "bugId": 73, + "changedFiles": { + "org/apache/commons/math/analysis/solvers/BrentSolver.java": { + "inserts": [ + [ + 135, + 136, + 137, + 138 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/analysis/solvers/BrentSolver.java\n+++ b/src/main/java/org/apache/commons/math/analysis/solvers/BrentSolver.java\n@@ -133,6 +133,10 @@ public double solve(final UnivariateRealFunction f,\n return solve(f, initial, yInitial, max, yMax, initial, yInitial);\n }\n \n+ if (yMin * yMax > 0) {\n+ throw MathRuntimeException.createIllegalArgumentException(\n+ NON_BRACKETING_MESSAGE, min, max, yMin, yMax);\n+ }\n \n // full Brent algorithm starting with provided initial guess\n return solve(f, min, yMin, max, yMax, initial, yInitial);\n", + "failingTests": [ + { + "className": " org.apache.commons.math.analysis.solvers.BrentSolverTest", + "error": "junit.framework.AssertionFailedError", + "message": "Expecting IllegalArgumentException - non-bracketing", + "methodName": "testBadEndpoints" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 4, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 4, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "condBranIfAdd", + "exThrowsAdd", + "mcAdd" + ], + "repairPatterns": [ + "condBlockExcAdd" + ], + "repairTools": [ + "rtCardumen", + "rtDeepRepair", + "rtElixir", + "rtGPFL", + "rtGenProg", + "rtNopol" + ], + "revisionId": "29c3b75e2d5120771ca85ffcbffc9b7cb5d45c58" + }, + { + "bugId": 74, + "changedFiles": { + "org/apache/commons/math/ode/nonstiff/EmbeddedRungeKuttaIntegrator.java": { + "changes": [ + [ + 245 + ], + [ + 247 + ], + [ + 248 + ], + [ + 250 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/ode/nonstiff/EmbeddedRungeKuttaIntegrator.java\n+++ b/src/main/java/org/apache/commons/math/ode/nonstiff/EmbeddedRungeKuttaIntegrator.java\n@@ -242,12 +242,15 @@ public double integrate(final FirstOrderDifferentialEquations equations,\n }\n \n if (firstTime) {\n- final double[] scale;\n+ final double[] scale = new double[y0.length];\n if (vecAbsoluteTolerance == null) {\n- scale = new double[y0.length];\n- java.util.Arrays.fill(scale, scalAbsoluteTolerance);\n+ for (int i = 0; i < scale.length; ++i) {\n+ scale[i] = scalAbsoluteTolerance + scalRelativeTolerance * Math.abs(y[i]);\n+ }\n } else {\n- scale = vecAbsoluteTolerance;\n+ for (int i = 0; i < scale.length; ++i) {\n+ scale[i] = vecAbsoluteTolerance[i] + vecRelativeTolerance[i] * Math.abs(y[i]);\n+ }\n }\n hNew = initializeStep(equations, forward, getOrder(), scale,\n stepStart, y, yDotK[0], yTmp, yDotK[1]);\n", + "failingTests": [ + { + "className": " org.apache.commons.math.ode.nonstiff.AdamsMoultonIntegratorTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "polynomial" + } + ], + "metrics": { + "chunks": 3, + "classes": 1, + "files": 1, + "linesAdd": 3, + "linesMod": 4, + "linesRem": 0, + "methods": 1, + "sizeInLines": 7, + "spreadAllLines": 2, + "spreadCodeOnly": 2 + }, + "observations": "A vector/object was instantiated.The way to initialize values was changed.", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignAdd", + "assignRem", + "loopAdd", + "mcAdd", + "mcRem" + ], + "repairPatterns": [ + "initFix", + "notClassified", + "wrongComp" + ], + "repairTools": [ + "rtCardumen", + "rtDeepRepair" + ], + "revisionId": "d06e7b7c8e646ff489a5dfba47dfcb283a194e9b" + }, + { + "bugId": 75, + "changedFiles": { + "org/apache/commons/math/stat/Frequency.java": { + "changes": [ + [ + 303 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/stat/Frequency.java\n+++ b/src/main/java/org/apache/commons/math/stat/Frequency.java\n@@ -300,7 +300,7 @@ public long getCount(char v) {\n */\n @Deprecated\n public double getPct(Object v) {\n- return getCumPct((Comparable) v);\n+ return getPct((Comparable) v);\n }\n \n /**\n", + "failingTests": [ + { + "className": " org.apache.commons.math.stat.FrequencyTest", + "error": "junit.framework.AssertionFailedError", + "message": "three (Object) pct expected:<0.5> but was:<1.0>", + "methodName": "testPcts" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "mcRepl", + "retExpChange" + ], + "repairPatterns": [ + "singleLine", + "wrongMethodRef" + ], + "repairTools": [ + "rtElixir" + ], + "revisionId": "523df0c13719150b1397a6094f410274bfaf1475" + }, + { + "bugId": 77, + "changedFiles": { + "org/apache/commons/math/linear/ArrayRealVector.java": { + "changes": [ + [ + 721 + ] + ] + }, + "org/apache/commons/math/linear/OpenMapRealVector.java": { + "deletes": [ + [ + 498 + ], + [ + 499 + ], + [ + 500 + ], + [ + 501 + ], + [ + 502 + ], + [ + 503 + ], + [ + 504 + ], + [ + 505 + ], + [ + 506 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/linear/ArrayRealVector.java\n+++ b/src/main/java/org/apache/commons/math/linear/ArrayRealVector.java\n@@ -718,7 +718,7 @@ public double getL1Norm() {\n public double getLInfNorm() {\n double max = 0;\n for (double a : data) {\n- max += Math.max(max, Math.abs(a));\n+ max = Math.max(max, Math.abs(a));\n }\n return max;\n }\n--- a/src/main/java/org/apache/commons/math/linear/OpenMapRealVector.java\n+++ b/src/main/java/org/apache/commons/math/linear/OpenMapRealVector.java\n@@ -495,15 +495,6 @@ public double getL1Distance(double[] v) throws IllegalArgumentException {\n return max;\n }\n \n- public double getLInfNorm() {\n- double max = 0;\n- Iterator iter = entries.iterator();\n- while (iter.hasNext()) {\n- iter.advance();\n- max += iter.value();\n- }\n- return max;\n- }\n /**\n * Optimized method to compute LInfDistance.\n * @param v The vector to compute from\n", + "failingTests": [ + { + "className": " org.apache.commons.math.linear.ArrayRealVectorTest", + "error": "junit.framework.AssertionFailedError", + "message": "compare values expected:<6.0> but was:<128.0>", + "methodName": "testBasicFunctions" + }, + { + "className": " org.apache.commons.math.linear.SparseRealVectorTest", + "error": "junit.framework.AssertionFailedError", + "message": "compare values expected:<6.0> but was:<-3.0>", + "methodName": "testBasicFunctions" + } + ], + "metrics": { + "chunks": 2, + "classes": 2, + "files": 2, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 9, + "methods": 2, + "sizeInLines": 10, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Fix a assignment. Removes a method (aparently, unrelated changes).", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignExpChange", + "assignRem", + "loopRem", + "mcRem", + "mdOverride", + "mdRem", + "retRem", + "varRem" + ], + "repairPatterns": [ + "blockRemove", + "expArithMod", + "wrongComp" + ], + "repairTools": [ + "rtDeepRepair" + ], + "revisionId": "d6555de715889237b7be11639d164e7098862003" + }, + { + "bugId": 82, + "changedFiles": { + "org/apache/commons/math/optimization/linear/SimplexSolver.java": { + "changes": [ + [ + 82 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/optimization/linear/SimplexSolver.java\n+++ b/src/main/java/org/apache/commons/math/optimization/linear/SimplexSolver.java\n@@ -79,7 +79,7 @@ private Integer getPivotRow(final int col, final SimplexTableau tableau) {\n for (int i = tableau.getNumObjectiveFunctions(); i < tableau.getHeight(); i++) {\n final double rhs = tableau.getEntry(i, tableau.getWidth() - 1);\n final double entry = tableau.getEntry(i, col);\n- if (MathUtils.compareTo(entry, 0, epsilon) >= 0) {\n+ if (MathUtils.compareTo(entry, 0, epsilon) > 0) {\n final double ratio = rhs / entry;\n if (ratio < minRatio) {\n minRatio = ratio;\n", + "failingTests": [ + { + "className": " org.apache.commons.math.optimization.linear.SimplexSolverTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<10.0> but was:<11.5>", + "methodName": "testMath288" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Changes operator in condition.", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "condExpMod" + ], + "repairPatterns": [ + "expLogicMod", + "singleLine" + ], + "repairTools": [ + "rtAcs", + "rtCardumen", + "rtDeepRepair", + "rtDynaMoth", + "rtElixir", + "rtGPFL", + "rtGenProg", + "rtHDRepair", + "rtJAID", + "rtKali" + ], + "revisionId": "4ece1884cc408e15c8f1db9010fec5cac43937b9" + }, + { + "bugId": 76, + "changedFiles": { + "org/apache/commons/math/linear/SingularValueDecompositionImpl.java": { + "changes": [ + [ + 162 + ], + [ + 166 + ], + [ + 178 + ], + [ + 248 + ], + [ + 252 + ], + [ + 263 + ] + ], + "deletes": [ + [ + 176 + ], + [ + 261 + ] + ], + "inserts": [ + [ + 171 + ], + [ + 177 + ], + [ + 180, + 181 + ], + [ + 180, + 181 + ], + [ + 256 + ], + [ + 262 + ], + [ + 265 + ], + [ + 265 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/linear/SingularValueDecompositionImpl.java\n+++ b/src/main/java/org/apache/commons/math/linear/SingularValueDecompositionImpl.java\n@@ -159,24 +159,27 @@ public RealMatrix getU()\n if (m >= n) {\n // the tridiagonal matrix is Bt.B, where B is upper bidiagonal\n final RealMatrix e =\n- eigenDecomposition.getV().getSubMatrix(0, p - 1, 0, p - 1);\n+ eigenDecomposition.getV().getSubMatrix(0, n - 1, 0, p - 1);\n final double[][] eData = e.getData();\n final double[][] wData = new double[m][p];\n double[] ei1 = eData[0];\n- for (int i = 0; i < p - 1; ++i) {\n+ for (int i = 0; i < p; ++i) {\n // compute W = B.E.S^(-1) where E is the eigenvectors matrix\n final double mi = mainBidiagonal[i];\n final double[] ei0 = ei1;\n final double[] wi = wData[i];\n+ if (i < n - 1) {\n ei1 = eData[i + 1];\n final double si = secondaryBidiagonal[i];\n for (int j = 0; j < p; ++j) {\n wi[j] = (mi * ei0[j] + si * ei1[j]) / singularValues[j];\n }\n- }\n+ } else {\n for (int j = 0; j < p; ++j) {\n- wData[p - 1][j] = ei1[j] * mainBidiagonal[p - 1] / singularValues[j];\n+ wi[j] = mi * ei0[j] / singularValues[j];\n }\n+ }\n+ }\n \n for (int i = p; i < m; ++i) {\n wData[i] = new double[p];\n@@ -245,23 +248,26 @@ public RealMatrix getV()\n // the tridiagonal matrix is B.Bt, where B is lower bidiagonal\n // compute W = Bt.E.S^(-1) where E is the eigenvectors matrix\n final RealMatrix e =\n- eigenDecomposition.getV().getSubMatrix(0, p - 1, 0, p - 1);\n+ eigenDecomposition.getV().getSubMatrix(0, m - 1, 0, p - 1);\n final double[][] eData = e.getData();\n final double[][] wData = new double[n][p];\n double[] ei1 = eData[0];\n- for (int i = 0; i < p - 1; ++i) {\n+ for (int i = 0; i < p; ++i) {\n final double mi = mainBidiagonal[i];\n final double[] ei0 = ei1;\n final double[] wi = wData[i];\n+ if (i < m - 1) {\n ei1 = eData[i + 1];\n final double si = secondaryBidiagonal[i];\n for (int j = 0; j < p; ++j) {\n wi[j] = (mi * ei0[j] + si * ei1[j]) / singularValues[j];\n }\n- }\n+ } else {\n for (int j = 0; j < p; ++j) {\n- wData[p - 1][j] = ei1[j] * mainBidiagonal[p - 1] / singularValues[j];\n+ wi[j] = mi * ei0[j] / singularValues[j];\n }\n+ }\n+ }\n for (int i = p; i < n; ++i) {\n wData[i] = new double[p];\n }\n", + "failingTests": [ + { + "className": " org.apache.commons.math.linear.SingularValueSolverTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<0.0> but was:<0.09336767546650937>", + "methodName": "testMath320A" + }, + { + "className": " org.apache.commons.math.linear.SingularValueSolverTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<0.0> but was:<3.2>", + "methodName": "testMath320B" + } + ], + "metrics": { + "chunks": 12, + "classes": 1, + "files": 1, + "linesAdd": 6, + "linesMod": 8, + "linesRem": 0, + "methods": 1, + "sizeInLines": 14, + "spreadAllLines": 95, + "spreadCodeOnly": 67 + }, + "observations": "The structure of the changes are similar and applied in two different methods.", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignAdd", + "assignExpChange", + "assignRem", + "condBranIfElseAdd", + "loopCondChange", + "mcParValChange", + "varReplVar" + ], + "repairPatterns": [ + "copyPaste", + "expArithMod", + "expLogicMod", + "wrapsIfElse", + "wrongVarRef" + ], + "repairTools": [], + "revisionId": "39e2ad8af8fdedac51144158061cb31e7863c3a1" + }, + { + "bugId": 84, + "changedFiles": { + "org/apache/commons/math/optimization/direct/MultiDirectional.java": { + "inserts": [ + [ + 63, + 64 + ], + [ + 92, + 93, + 94, + 95, + 96, + 97 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/optimization/direct/MultiDirectional.java\n+++ b/src/main/java/org/apache/commons/math/optimization/direct/MultiDirectional.java\n@@ -61,6 +61,7 @@ public MultiDirectional(final double khi, final double gamma) {\n protected void iterateSimplex(final Comparator comparator)\n throws FunctionEvaluationException, OptimizationException, IllegalArgumentException {\n \n+ final RealConvergenceChecker checker = getConvergenceChecker();\n while (true) {\n \n incrementIterationsCounter();\n@@ -89,8 +90,16 @@ protected void iterateSimplex(final Comparator comparator)\n final RealPointValuePair contracted = evaluateNewSimplex(original, gamma, comparator);\n if (comparator.compare(contracted, best) < 0) {\n // accept the contracted simplex\n+ return;\n+ }\n \n // check convergence\n+ final int iter = getIterations();\n+ boolean converged = true;\n+ for (int i = 0; i < simplex.length; ++i) {\n+ converged &= checker.converged(iter, original[i], simplex[i]);\n+ }\n+ if (converged) {\n return;\n }\n \n", + "failingTests": [ + { + "className": " org.apache.commons.math.optimization.direct.MultiDirectionalTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testMinimizeMaximize" + }, + { + "className": " org.apache.commons.math.optimization.direct.MultiDirectionalTest", + "error": "org.apache.commons.math.optimization.OptimizationException", + "message": "org.apache.commons.math.MaxIterationsExceededException: Maximal number of iterations (100) exceeded", + "methodName": "testMath283" + } + ], + "metrics": { + "chunks": 3, + "classes": 1, + "files": 1, + "linesAdd": 9, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 9, + "spreadAllLines": 30, + "spreadCodeOnly": 15 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignAdd", + "condBranIfAdd", + "loopAdd", + "mcAdd", + "retBranchAdd", + "varAdd" + ], + "repairPatterns": [ + "condBlockRetAdd", + "missComp" + ], + "repairTools": [ + "rtCardumen", + "rtDeepRepair", + "rtGPFL", + "rtGenProg", + "rtKali" + ], + "revisionId": "317793eeff84dc9b260301adbe4aa8f5c79f703a" + }, + { + "bugId": 81, + "changedFiles": { + "org/apache/commons/math/linear/EigenDecompositionImpl.java": { + "changes": [ + [ + 905 + ], + [ + 906 + ], + [ + 1543 + ] + ], + "inserts": [ + [ + 603, + 604, + 605 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/linear/EigenDecompositionImpl.java\n+++ b/src/main/java/org/apache/commons/math/linear/EigenDecompositionImpl.java\n@@ -600,6 +600,7 @@ private void computeGershgorinCircles() {\n lowerSpectra = Math.min(lowerSpectra, lower);\n final double upper = dCurrent + eCurrent;\n work[upperStart + m - 1] = upper;\n+ upperSpectra = Math.max(upperSpectra, upper);\n minPivot = MathUtils.SAFE_MIN * Math.max(1.0, eMax * eMax);\n \n }\n@@ -902,8 +903,8 @@ private void processGeneralBlock(final int n)\n diagMax = work[4 * i0];\n offDiagMin = work[4 * i0 + 2];\n double previousEMin = work[4 * i0 + 3];\n- for (int i = 4 * i0; i < 4 * n0 - 11; i += 4) {\n- if ((work[i + 3] <= TOLERANCE_2 * work[i]) &&\n+ for (int i = 4 * i0; i < 4 * n0 - 16; i += 4) {\n+ if ((work[i + 3] <= TOLERANCE_2 * work[i]) ||\n (work[i + 2] <= TOLERANCE_2 * sigma)) {\n // insert a split\n work[i + 2] = -sigma;\n@@ -1540,7 +1541,7 @@ private void computeShiftIncrement(final int start, final int end, final int def\n double a2 = (work[np - 8] / b2) * (1 + work[np - 4] / b1);\n \n // approximate contribution to norm squared from i < nn-2.\n- if (end - start > 2) {\n+ if (end - start > 3) {\n b2 = work[nn - 13] / work[nn - 15];\n a2 = a2 + b2;\n for (int i4 = nn - 17; i4 >= 4 * start + 2 + pingPong; i4 -= 4) {\n", + "failingTests": [ + { + "className": " org.apache.commons.math.linear.EigenDecompositionImplTest", + "error": "java.lang.ArrayIndexOutOfBoundsException", + "message": "-1", + "methodName": "testMath308" + } + ], + "metrics": { + "chunks": 3, + "classes": 1, + "files": 1, + "linesAdd": 1, + "linesMod": 3, + "linesRem": 0, + "methods": 3, + "sizeInLines": 4, + "spreadAllLines": 938, + "spreadCodeOnly": 643 + }, + "observations": "Fix/updates assignment to var upperSpectra.", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignAdd", + "condExpMod", + "loopCondChange", + "mcAdd" + ], + "repairPatterns": [ + "constChange", + "expArithMod", + "expLogicMod", + "missComp" + ], + "repairTools": [ + "rtCardumen", + "rtDeepRepair", + "rtGPFL", + "rtGenProg", + "rtKali", + "rtNopol" + ], + "revisionId": "7d903ca533833e5db8d2fe150f1e31b54ddda700" + }, + { + "bugId": 80, + "changedFiles": { + "org/apache/commons/math/linear/EigenDecompositionImpl.java": { + "changes": [ + [ + 1135 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/linear/EigenDecompositionImpl.java\n+++ b/src/main/java/org/apache/commons/math/linear/EigenDecompositionImpl.java\n@@ -1132,7 +1132,7 @@ private int goodStep(final int start, final int end) {\n private boolean flipIfWarranted(final int n, final int step) {\n if (1.5 * work[pingPong] < work[4 * (n - 1) + pingPong]) {\n // flip array\n- int j = 4 * n - 1;\n+ int j = 4 * (n - 1);\n for (int i = 0; i < j; i += 4) {\n for (int k = 0; k < 4; k += step) {\n final double tmp = work[i + k];\n", + "failingTests": [ + { + "className": " org.apache.commons.math.linear.EigenDecompositionImplTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<16828.208208485466> but was:<20654.74511575945>", + "methodName": "testMathpbx02" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Fix expression in assignment (added parathesis).", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignExpChange" + ], + "repairPatterns": [ + "expArithMod", + "singleLine" + ], + "repairTools": [ + "rtCardumen", + "rtDeepRepair", + "rtDynaMoth", + "rtElixir", + "rtGPFL", + "rtGenProg", + "rtJAID", + "rtKali", + "rtNopol" + ], + "revisionId": "3ced4f2a4e2546f0d7c309bd8f6305edee0dee8f" + }, + { + "bugId": 78, + "changedFiles": { + "org/apache/commons/math/ode/events/EventState.java": { + "inserts": [ + [ + 189, + 190, + 191, + 192, + 193, + 194, + 195, + 196, + 197, + 198, + 199, + 200, + 201 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/ode/events/EventState.java\n+++ b/src/main/java/org/apache/commons/math/ode/events/EventState.java\n@@ -188,6 +188,7 @@ public boolean evaluateStep(final StepInterpolator interpolator)\n if (g0Positive ^ (gb >= 0)) {\n // there is a sign change: an event is expected during this step\n \n+ if (ga * gb > 0) {\n // this is a corner case:\n // - there was an event near ta,\n // - there is another event between ta and tb\n@@ -195,7 +196,17 @@ public boolean evaluateStep(final StepInterpolator interpolator)\n // this implies that the real sign of ga is the same as gb, so we need to slightly\n // shift ta to make sure ga and gb get opposite signs and the solver won't complain\n // about bracketing\n+ final double epsilon = (forward ? 0.25 : -0.25) * convergence;\n+ for (int k = 0; (k < 4) && (ga * gb > 0); ++k) {\n+ ta += epsilon;\n+ interpolator.setInterpolatedTime(ta);\n+ ga = handler.g(ta, interpolator.getInterpolatedState());\n+ }\n+ if (ga * gb > 0) {\n // this should never happen\n+ throw MathRuntimeException.createInternalError(null);\n+ }\n+ }\n \n // variation direction, with respect to the integration direction\n increasing = gb >= ga;\n", + "failingTests": [ + { + "className": " org.apache.commons.math.ode.events.EventStateTest", + "error": "org.apache.commons.math.MathRuntimeException$4", + "message": "function values at endpoints do not have different signs. Endpoints: [89.999, 153.1], Values: [-0.066, -1,142.11]", + "methodName": "closeEvents" + } + ], + "metrics": { + "chunks": 3, + "classes": 1, + "files": 1, + "linesAdd": 11, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 11, + "spreadAllLines": 8, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignAdd", + "condBranIfAdd", + "exThrowsAdd", + "loopAdd", + "mcAdd", + "varAdd" + ], + "repairPatterns": [ + "condBlockExcAdd", + "condBlockOthersAdd", + "missComp" + ], + "repairTools": [ + "rtCardumen", + "rtDeepRepair", + "rtDynaMoth", + "rtGPFL", + "rtGenProg", + "rtKali", + "rtNopol" + ], + "revisionId": "b3ed2415fc58b34667d99f077bae6c8e38b7aced" + }, + { + "bugId": 83, + "changedFiles": { + "org/apache/commons/math/optimization/linear/SimplexTableau.java": { + "changes": [ + [ + 292 + ], + [ + 341 + ], + [ + 345 + ] + ] + } + }, + "diff": "--- a/src/main/java/org/apache/commons/math/optimization/linear/SimplexTableau.java\n+++ b/src/main/java/org/apache/commons/math/optimization/linear/SimplexTableau.java\n@@ -289,7 +289,7 @@ private Integer getBasicRowForSolution(final int col) {\n */\n private Integer getBasicRow(final int col, boolean ignoreObjectiveRows) {\n Integer row = null;\n- int start = getNumObjectiveFunctions();\n+ int start = ignoreObjectiveRows ? getNumObjectiveFunctions() : 0;\n for (int i = start; i < getHeight(); i++) {\n if (MathUtils.equals(getEntry(i, col), 1.0, epsilon) && (row == null)) {\n row = i;\n@@ -338,11 +338,11 @@ private void copyArray(final double[] src, final double[] dest,\n */\n protected RealPointValuePair getSolution() {\n double[] coefficients = new double[getOriginalNumDecisionVariables()];\n- Integer negativeVarBasicRow = getBasicRow(getNegativeDecisionVariableOffset());\n+ Integer negativeVarBasicRow = getBasicRowForSolution(getNegativeDecisionVariableOffset());\n double mostNegative = negativeVarBasicRow == null ? 0 : getEntry(negativeVarBasicRow, getRhsOffset());\n Set basicRows = new HashSet();\n for (int i = 0; i < coefficients.length; i++) {\n- Integer basicRow = getBasicRow(getNumObjectiveFunctions() + i);\n+ Integer basicRow = getBasicRowForSolution(getNumObjectiveFunctions() + i);\n if (basicRows.contains(basicRow)) {\n // if multiple variables can take a given value \n // then we choose the first and set the rest equal to 0\n", + "failingTests": [ + { + "className": " org.apache.commons.math.optimization.linear.SimplexSolverTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<6.9> but was:<4.6000000000000005>", + "methodName": "testMath286" + } + ], + "metrics": { + "chunks": 3, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 3, + "linesRem": 0, + "methods": 2, + "sizeInLines": 3, + "spreadAllLines": 51, + "spreadCodeOnly": 34 + }, + "observations": "The added \"WrapWith\" uses \"exp?a:b\" format.", + "program": 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org.apache.commons.math.stat.clustering.KMeansPlusPlusClustererTest", + "error": "java.lang.NullPointerException", + "message": "", + "methodName": "testPerformClusterAnalysisDegenerate" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 2, + "linesRem": 0, + "methods": 1, + "sizeInLines": 2, + "spreadAllLines": 1, + "spreadCodeOnly": 1 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "varTyChange" + ], + "repairPatterns": [ + "notClassified" + ], + "repairTools": [ + "rtCardumen", + "rtssFix" + ], + "revisionId": "138baec1c778c2ea1dc1a6efe6d5e76a3b072b1d" + }, + { + "bugId": 85, + "changedFiles": { + "org/apache/commons/math/analysis/solvers/UnivariateRealSolverUtils.java": { + "changes": [ + [ + 198 + ] + ] + } + }, + "diff": "--- a/src/java/org/apache/commons/math/analysis/solvers/UnivariateRealSolverUtils.java\n+++ b/src/java/org/apache/commons/math/analysis/solvers/UnivariateRealSolverUtils.java\n@@ -195,7 +195,7 @@ public static double solve(UnivariateRealFunction f, double x0, double x1,\n } while ((fa * fb > 0.0) && (numIterations < maximumIterations) && \n ((a > lowerBound) || (b < upperBound)));\n \n- if (fa * fb >= 0.0 ) {\n+ if (fa * fb > 0.0 ) {\n throw new ConvergenceException(\n \"number of iterations={0}, maximum iterations={1}, \" +\n \"initial={2}, lower bound={3}, upper bound={4}, final a value={5}, \" +\n", + "failingTests": [ + { + "className": " org.apache.commons.math.distribution.NormalDistributionTest", + "error": "org.apache.commons.math.MathException", + "message": "org.apache.commons.math.ConvergenceException: number of iterations=1, maximum iterations=2,147,483,647, initial=1, lower bound=0, upper 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getBasicRow(final int col) {\n Integer row = null;\n for (int i = getNumObjectiveFunctions(); i < getHeight(); i++) {\n- if (!MathUtils.equals(getEntry(i, col), 0.0, epsilon)) {\n- if (row == null) {\n+ if (MathUtils.equals(getEntry(i, col), 1.0, epsilon) && (row == null)) {\n row = i;\n- } else {\n+ } else if (!MathUtils.equals(getEntry(i, col), 0.0, epsilon)) {\n return null;\n- }\n }\n }\n return row;\n", + "failingTests": [ + { + "className": " org.apache.commons.math.optimization.linear.SimplexSolverTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<10.0> but was:<0.0>", + "methodName": "testSingleVariableAndConstraint" + } + ], + "metrics": { + "chunks": 3, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 2, + "linesRem": 2, + "methods": 1, + "sizeInLines": 4, + "spreadAllLines": 2, + "spreadCodeOnly": 2 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "condBranIfElseAdd", + "mcAdd" + ], + "repairPatterns": [ + "wrapsIfElse", + "wrongComp" + ], + "repairTools": [ + "rtDynaMoth", + "rtNopol" + ], + "revisionId": "75f5c92aeb47e264c196a8c38a495adac89f493c" + }, + { + "bugId": 86, + "changedFiles": { + "org/apache/commons/math/linear/CholeskyDecompositionImpl.java": { + "deletes": [ + [ + 114 + ], + [ + 115 + ], + [ + 116 + ] + ], + "inserts": [ + [ + 135, + 136, + 137, + 138 + ] + ] + } + }, + "diff": "--- a/src/java/org/apache/commons/math/linear/CholeskyDecompositionImpl.java\n+++ b/src/java/org/apache/commons/math/linear/CholeskyDecompositionImpl.java\n@@ -111,9 +111,6 @@ public CholeskyDecompositionImpl(final RealMatrix matrix,\n \n final double[] lI = lTData[i];\n \n- if (lTData[i][i] < absolutePositivityThreshold) {\n- throw new NotPositiveDefiniteMatrixException();\n- }\n // check off-diagonal elements (and reset them to 0)\n for (int j = i + 1; j < order; ++j) {\n final double[] lJ = lTData[j];\n@@ -134,6 +131,9 @@ public CholeskyDecompositionImpl(final RealMatrix matrix,\n final double[] ltI = lTData[i];\n \n // check diagonal element\n+ if (ltI[i] < absolutePositivityThreshold) {\n+ throw new NotPositiveDefiniteMatrixException();\n+ }\n \n ltI[i] = Math.sqrt(ltI[i]);\n final double inverse = 1.0 / ltI[i];\n", + "failingTests": [ + { + "className": " org.apache.commons.math.linear.CholeskyDecompositionImplTest", + "error": "junit.framework.AssertionFailedError", + "message": "Expected exception: org.apache.commons.math.linear.NotPositiveDefiniteMatrixException", + "methodName": "testMath274" + }, + { + "className": " org.apache.commons.math.linear.CholeskyDecompositionImplTest", + "error": "junit.framework.AssertionFailedError", + "message": "Expected exception: org.apache.commons.math.linear.NotPositiveDefiniteMatrixException", + "methodName": "testNotPositiveDefinite" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 3, + "linesMod": 0, + "linesRem": 3, + "methods": 1, + "sizeInLines": 6, + "spreadAllLines": 20, + "spreadCodeOnly": 14 + }, + "observations": "The condition to throw the exception is moved from one place to another.", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "condBranIfAdd", + "condBranRem", + "exThrowsAdd", + "exThrowsRem", + "objInstAdd", + "objInstRem" + ], + "repairPatterns": [ + "codeMove" + ], + "repairTools": [], + "revisionId": "bd8f05c4dda4b5b00e525e08fd6c95d256423c97" + }, + { + "bugId": 88, + "changedFiles": { + "org/apache/commons/math/optimization/linear/SimplexTableau.java": { + "deletes": [ + [ + 336 + ], + [ + 337 + ], + [ + 338 + ], + [ + 339 + ], + [ + 340 + ], + [ + 341 + ], + [ + 342 + ] + ], + "inserts": [ + [ + 325, + 326, + 327, + 328, + 329 + ], + [ + 331, + 332, + 333 + ], + [ + 343 + ] + ] + } + }, + "diff": "--- a/src/java/org/apache/commons/math/optimization/linear/SimplexTableau.java\n+++ b/src/java/org/apache/commons/math/optimization/linear/SimplexTableau.java\n@@ -326,19 +326,18 @@ protected RealPointValuePair getSolution() {\n Integer basicRow =\n getBasicRow(getNumObjectiveFunctions() + getOriginalNumDecisionVariables());\n double mostNegative = basicRow == null ? 0 : getEntry(basicRow, getRhsOffset());\n+ Set basicRows = new HashSet();\n for (int i = 0; i < coefficients.length; i++) {\n basicRow = getBasicRow(getNumObjectiveFunctions() + i);\n+ if (basicRows.contains(basicRow)) {\n // if multiple variables can take a given value \n // then we choose the first and set the rest equal to 0\n+ coefficients[i] = 0;\n+ } else {\n+ basicRows.add(basicRow);\n coefficients[i] =\n (basicRow == null ? 0 : getEntry(basicRow, getRhsOffset())) -\n (restrictToNonNegative ? 0 : mostNegative);\n- if (basicRow != null) {\n- for (int j = getNumObjectiveFunctions(); j < getNumObjectiveFunctions() + i; j++) {\n- if (tableau.getEntry(basicRow, j) == 1) {\n- coefficients[i] = 0;\n- }\n- }\n }\n }\n return new RealPointValuePair(coefficients, f.getValue(coefficients));\n", + "failingTests": [ + { + "className": 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>= 0 for n!\");\n+ }\n+ if (n > 20) {\n throw new ArithmeticException(\n \"factorial value is too large to fit in a long\");\n }\n@@ -374,6 +376,9 @@ public static double factorialDouble(final int n) {\n if (n < 0) {\n throw new IllegalArgumentException(\"must have n >= 0 for n!\");\n }\n+ if (n < 21) {\n+ return factorial(n);\n+ }\n return Math.floor(Math.exp(factorialLog(n)) + 0.5);\n }\n \n@@ -394,6 +399,9 @@ public static double factorialLog(final int n) {\n if (n < 0) {\n throw new IllegalArgumentException(\"must have n > 0 for n!\");\n }\n+ if (n < 21) {\n+ return Math.log(factorial(n));\n+ }\n double logSum = 0;\n for (int i = 2; i <= n; i++) {\n logSum += Math.log((double)i);\n", + "failingTests": [ + { + "className": " org.apache.commons.math.util.MathUtilsTest", + "error": "junit.framework.AssertionFailedError", + "message": "17! expected:<3.55687428096E14> but was:<3.55687428096001E14>", + "methodName": "testFactorial" + } + ], + "metrics": { + "chunks": 3, + "classes": 1, + 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getDomainUpperBound(double p) {\n * @return initial domain value\n */\n protected double getInitialDomain(double p) {\n- double ret;\n+ double ret = 1.0;\n double d = getDenominatorDegreesOfFreedom();\n+ if (d > 2.0) {\n // use mean\n ret = d / (d - 2.0);\n+ }\n return ret;\n }\n \n", + "failingTests": [ + { + "className": " org.apache.commons.math.distribution.FDistributionTest", + "error": "java.lang.IllegalArgumentException", + "message": "Invalid endpoint parameters: lowerBound=0.0 initial=-1.0 upperBound=1.7976931348623157E308", + "methodName": "testSmallDegreesOfFreedom" + } + ], + "metrics": { + "chunks": 3, + "classes": 1, + "files": 1, + "linesAdd": 2, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 3, + "spreadAllLines": 3, + "spreadCodeOnly": 2 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignAdd", + "condBranIfAdd" + ], + "repairPatterns": [ + "initFix", + "wrapsIf" + ], + "repairTools": [ + 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b/src/java/org/apache/commons/math/stat/Frequency.java\n@@ -107,6 +107,8 @@ public String toString() {\n */\n @Deprecated\n public void addValue(Object v) {\n+ addValue((Comparable) v);\n+ }\n \n /**\n * Adds 1 to the frequency count for v.\n@@ -118,6 +120,7 @@ public void addValue(Object v) {\n * @param v the value to add.\n * @throws IllegalArgumentException if v is not comparable with previous entries\n */\n+ public void addValue(Comparablev){\n Object obj = v;\n if (v instanceof Integer) {\n obj = Long.valueOf(((Integer) v).longValue());\n", + "failingTests": [ + { + "className": " org.apache.commons.math.stat.FrequencyTest", + "error": "java.lang.IllegalArgumentException", + "message": "Value not comparable to existing values.", + "methodName": "testAddNonComparable" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 3, + "linesMod": 0, + "linesRem": 0, + "methods": 2, + "sizeInLines": 3, + "spreadAllLines": 11, + "spreadCodeOnly": 0 + }, + "observations": "Added a new overloaded method reusing part of the implementation of an existing one. 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"className": " org.apache.commons.math.complex.ComplexTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected: but was:", + "methodName": "testMath221" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Changes logical expression in assignment", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignExpChange", + "mcRem" + ], + "repairPatterns": [ + "expLogicMod", + "singleLine", + "unwrapMethod" + ], + "repairTools": [], + "revisionId": "e6449cccdeaba96ffba4c27db322c5c3d5c18662" + }, + { + "bugId": 92, + "changedFiles": { + "org/apache/commons/math/util/MathUtils.java": { + "changes": [ + [ + 236 + ] + ], + "deletes": [ + [ + 184 + ], + [ + 185 + ], + [ + 186 + ], + [ + 187 + ], + [ + 188 + ] + ], + "inserts": [ + [ + 184, + 185, + 186, + 187, + 188, + 189, + 190, + 191, + 192, + 193, + 194, + 195, + 196, + 197, + 198, + 199, + 200, + 201, + 202, + 203, + 204, + 205, + 206, + 207, + 208 + ], + [ + 234, + 235, + 236 + ], + [ + 272, + 273, + 274, + 275, + 276, + 277, + 278, + 279, + 280, + 281, + 282, + 283, + 284, + 285, + 286, + 287, + 288, + 289 + ] + ] + } + }, + "diff": "--- a/src/java/org/apache/commons/math/util/MathUtils.java\n+++ b/src/java/org/apache/commons/math/util/MathUtils.java\n@@ -181,30 +181,43 @@ public static long binomialCoefficient(final int n, final int k) {\n if ((k == 1) || (k == n - 1)) {\n return n;\n }\n- long result = Math.round(binomialCoefficientDouble(n, k));\n- if (result == Long.MAX_VALUE) {\n- throw new ArithmeticException(\n- \"result too large to represent in a long integer\");\n- }\n // Use symmetry for large k\n+ if (k > n / 2)\n+ return binomialCoefficient(n, n - k);\n \n // We use the formula\n // (n choose k) = n! / (n-k)! / k!\n // (n choose k) == ((n-k+1)*...*n) / (1*...*k)\n // which could be written\n // (n choose k) == (n-1 choose k-1) * n / k\n+ long result = 1;\n+ if (n <= 61) {\n // For n <= 61, the naive implementation cannot overflow.\n+ for (int j = 1, i = n - k + 1; j <= k; i++, j++) {\n+ result = result * i / j;\n+ }\n+ } else if (n <= 66) {\n // For n > 61 but n <= 66, the result cannot overflow,\n // but we must take care not to overflow intermediate values.\n+ for (int j = 1, i = n - k + 1; j <= k; i++, j++) {\n // We know that (result * i) is divisible by j,\n // but (result * i) may overflow, so we split j:\n // Filter out the gcd, d, so j/d and i/d are integer.\n // result is divisible by (j/d) because (j/d)\n // is relative prime to (i/d) and is a divisor of\n // result * (i/d).\n+ long d = gcd(i, j);\n+ result = (result / (j / d)) * (i / d);\n+ }\n+ } else {\n // For n > 66, a result overflow might occur, so we check\n // the multiplication, taking care to not overflow\n // unnecessary.\n+ for (int j = 1, i = n - k + 1; j <= k; i++, j++) {\n+ long d = gcd(i, j);\n+ result = mulAndCheck((result / (j / d)), (i / d));\n+ }\n+ }\n return result;\n }\n \n@@ -231,9 +244,33 @@ public static long binomialCoefficient(final int n, final int k) {\n * @throws IllegalArgumentException if preconditions are not met.\n */\n public static double binomialCoefficientDouble(final int n, final int k) {\n+ if (n < k) {\n+ throw new IllegalArgumentException(\n+ \"must have n >= k for binomial coefficient (n,k)\");\n+ }\n+ if (n < 0) {\n+ throw new IllegalArgumentException(\n+ \"must have n >= 0 for binomial coefficient (n,k)\");\n+ }\n+ if ((n == k) || (k == 0)) {\n+ return 1d;\n+ }\n+ if ((k == 1) || (k == n - 1)) {\n+ return n;\n+ }\n+ if (k > n/2) {\n+ return binomialCoefficientDouble(n, n - k);\n+ }\n+ if (n < 67) {\n+ return binomialCoefficient(n,k);\n+ }\n \n+ double result = 1d;\n+ for (int i = 1; i <= k; i++) {\n+ result *= (double)(n - k + i) / (double)i;\n+ }\n \n- return Math.floor(Math.exp(binomialCoefficientLog(n, k)) + 0.5);\n+ return Math.floor(result + 0.5);\n }\n \n /**\n@@ -274,11 +311,17 @@ public static double binomialCoefficientLog(final int n, final int k) {\n * For values small enough to do exact integer computation,\n * return the log of the exact value \n */\n+ if (n < 67) { \n+ return Math.log(binomialCoefficient(n,k));\n+ }\n \n /*\n * Return the log of binomialCoefficientDouble for values that will not\n * overflow binomialCoefficientDouble\n */\n+ if (n < 1030) { \n+ return Math.log(binomialCoefficientDouble(n, k));\n+ } \n \n /*\n * Sum logs for values that could overflow\n", + "failingTests": [ + { + "className": " org.apache.commons.math.util.MathUtilsTest", + "error": "junit.framework.AssertionFailedError", + "message": "48,22 expected:<27385657281648> but was:<27385657281647>", + "methodName": "testBinomialCoefficientLarge" + } + ], + "metrics": { + "chunks": 12, + "classes": 1, + "files": 1, + "linesAdd": 48, + "linesMod": 1, + "linesRem": 5, + "methods": 2, + "sizeInLines": 54, + "spreadAllLines": 92, + 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b/src/java/org/apache/commons/math/linear/BigMatrixImpl.java\n@@ -988,7 +988,7 @@ public BigDecimal getTrace() throws IllegalArgumentException {\n }\n final int nRows = this.getRowDimension();\n final int nCols = this.getColumnDimension();\n- final BigDecimal[] out = new BigDecimal[v.length];\n+ final BigDecimal[] out = new BigDecimal[nRows];\n for (int row = 0; row < nRows; row++) {\n BigDecimal sum = ZERO;\n for (int i = 0; i < nCols; i++) {\n--- a/src/java/org/apache/commons/math/linear/RealMatrixImpl.java\n+++ b/src/java/org/apache/commons/math/linear/RealMatrixImpl.java\n@@ -776,7 +776,7 @@ public double getTrace() throws IllegalArgumentException {\n if (v.length != nCols) {\n throw new IllegalArgumentException(\"vector has wrong length\");\n }\n- final double[] out = new double[v.length];\n+ final double[] out = new double[nRows];\n for (int row = 0; row < nRows; row++) {\n final double[] dataRow = data[row];\n double sum = 0;\n", + "failingTests": [ + { + "className": " org.apache.commons.math.linear.BigMatrixImplTest", + "error": "java.lang.ArrayIndexOutOfBoundsException", + "message": "2", + "methodName": "testMath209" + }, + { + "className": " org.apache.commons.math.linear.RealMatrixImplTest", + "error": "java.lang.ArrayIndexOutOfBoundsException", + "message": "2", + "methodName": "testMath209" + } + ], + "metrics": { + "chunks": 2, + "classes": 2, + "files": 2, + "linesAdd": 0, + "linesMod": 2, + "linesRem": 0, + "methods": 2, + "sizeInLines": 2, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Changes dimension of two vectors.", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "varReplVar" + ], + "repairPatterns": [ + "copyPaste", + "initFix", + "wrongVarRef" + ], + "repairTools": [ + "rtDeepRepair" + ], + "revisionId": "a0f3e0435c405ec842240413e2165863c9c76a16" + }, + { + "bugId": 101, + "changedFiles": { + "org/apache/commons/math/complex/ComplexFormat.java": { + "changes": [ + [ + 377 + ] + ] + } + }, + "diff": "--- a/src/java/org/apache/commons/math/complex/ComplexFormat.java\n+++ b/src/java/org/apache/commons/math/complex/ComplexFormat.java\n@@ -374,7 +374,8 @@ public Complex parse(String source, ParsePosition pos) {\n int n = getImaginaryCharacter().length();\n startIndex = pos.getIndex();\n int endIndex = startIndex + n;\n- if (\n+ if ((startIndex >= source.length()) ||\n+ (endIndex > source.length()) ||\n source.substring(startIndex, endIndex).compareTo(\n getImaginaryCharacter()) != 0) {\n // set index back to initial, error index should be the start index\n", + "failingTests": [ + { + "className": " org.apache.commons.math.complex.ComplexFormatTest", + "error": "java.lang.StringIndexOutOfBoundsException", + "message": "String index out of range: 6", + "methodName": "testForgottenImaginaryCharacter" + }, + { + "className": " org.apache.commons.math.complex.FrenchComplexFormatTest", + "error": "java.lang.StringIndexOutOfBoundsException", + "message": "String index out of range: 6", + "methodName": "testForgottenImaginaryCharacter" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 1, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 2, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "condExpExpand", + "mcAdd" + ], + "repairPatterns": [ + "expLogicExpand", + "singleLine" + ], + "repairTools": [ + "rtCardumen", + "rtDynaMoth" + ], + "revisionId": "32643d19538ad853a1280eb4060c4f15ac6dc3dd" + }, + { + "bugId": 105, + "changedFiles": { + "org/apache/commons/math/stat/regression/SimpleRegression.java": { + "changes": [ + [ + 264 + ] + ] + } + }, + "diff": "--- a/src/java/org/apache/commons/math/stat/regression/SimpleRegression.java\n+++ b/src/java/org/apache/commons/math/stat/regression/SimpleRegression.java\n@@ -261,7 +261,7 @@ public double getSlope() {\n * @return sum of squared errors associated with the regression model\n */\n public double getSumSquaredErrors() {\n- return sumYY - sumXY * sumXY / sumXX;\n+ return Math.max(0d, sumYY - sumXY * sumXY / sumXX);\n }\n \n /**\n", + "failingTests": [ + { + "className": " org.apache.commons.math.stat.regression.SimpleRegressionTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "testSSENonNegative" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "mcAdd", + "retExpChange" + ], + "repairPatterns": [ + "singleLine", + "wrapsMethod" + ], + "repairTools": [ + "rtCardumen", + "rtDynaMoth", + "rtJAID", + "rtNopol" + ], + "revisionId": "fc21b26f84312e4f75e8b144238618c73a8b091f" + }, + { + "bugId": 104, + "changedFiles": { + "org/apache/commons/math/special/Gamma.java": { + "changes": [ + [ + 37 + ] + ] + } + }, + "diff": "--- a/src/java/org/apache/commons/math/special/Gamma.java\n+++ b/src/java/org/apache/commons/math/special/Gamma.java\n@@ -34,7 +34,7 @@\n private static final long serialVersionUID = -6587513359895466954L;\n \n /** Maximum allowed numerical error. */\n- private static final double DEFAULT_EPSILON = 10e-9;\n+ private static final double DEFAULT_EPSILON = 10e-15;\n \n /** Lanczos coefficients */\n private static double[] lanczos =\n", + "failingTests": [ + { + "className": " org.apache.commons.math.special.GammaTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<0.632120558828558> but was:<0.6321205587649603>", + "methodName": "testRegularizedGammaPositivePositive" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 0, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 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setResult(min, 0);\n+ ret = min;\n+ } else if (Math.abs(yMax) <= functionValueAccuracy) {\n+ setResult(max, 0);\n+ ret = max;\n+ } else {\n // neither value is close to zero and min and max do not bracket root.\n throw new IllegalArgumentException\n (\"Function values at endpoints do not have different signs.\" +\n \" Endpoints: [\" + min + \",\" + max + \"]\" + \n \" Values: [\" + yMin + \",\" + yMax + \"]\");\n- } else {\n+ }\n+ } else if (sign < 0){\n // solve using only the first endpoint as initial guess\n ret = solve(min, yMin, max, yMax, min, yMin);\n+ } else {\n // either min or max is a root\n+ if (yMin == 0.0) {\n+ ret = min;\n+ } else {\n+ ret = max;\n+ }\n }\n \n return ret;\n", + "failingTests": [ + { + "className": " org.apache.commons.math.analysis.BrentSolverTest", + "error": "java.lang.IllegalArgumentException", + "message": "Function values at endpoints do not have different signs. Endpoints: [3.0,3.141592653589793] Values: [0.1411200080598672,1.2246467991473532E-16]", + "methodName": "testRootEndpoints" + } + ], + "metrics": { + "chunks": 5, + "classes": 1, + "files": 1, + "linesAdd": 14, + "linesMod": 2, + "linesRem": 0, + "methods": 1, + "sizeInLines": 16, + "spreadAllLines": 9, + "spreadCodeOnly": 5 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignAdd", + "condBranIfElseAdd", + "condExpMod", + "mcAdd" + ], + "repairPatterns": [ + "condBlockOthersAdd", + "expLogicMod", + "wrapsIfElse" + ], + "repairTools": [ + "rtCardumen", + "rtDynaMoth" + ], + "revisionId": "ed492bd0c5c5c3a0258a65cb31cc8723d8f011fd" + }, + { + "bugId": 100, + "changedFiles": { + "org/apache/commons/math/estimation/AbstractEstimator.java": { + "changes": [ + [ + 166 + ], + [ + 202 + ], + [ + 207 + ] + ] + } + }, + "diff": "--- a/src/java/org/apache/commons/math/estimation/AbstractEstimator.java\n+++ b/src/java/org/apache/commons/math/estimation/AbstractEstimator.java\n@@ -163,7 +163,7 @@ public double getChiSquare(EstimationProblem problem) {\n \n // compute transpose(J).J, avoiding building big intermediate matrices\n final int rows = problem.getMeasurements().length;\n- final int cols = problem.getAllParameters().length;\n+ final int cols = problem.getUnboundParameters().length;\n final int max = cols * rows;\n double[][] jTj = new double[cols][cols];\n for (int i = 0; i < cols; ++i) {\n@@ -199,12 +199,12 @@ public double getChiSquare(EstimationProblem problem) {\n public double[] guessParametersErrors(EstimationProblem problem)\n throws EstimationException {\n int m = problem.getMeasurements().length;\n- int p = problem.getAllParameters().length;\n+ int p = problem.getUnboundParameters().length;\n if (m <= p) {\n throw new EstimationException(\"no degrees of freedom ({0} measurements, {1} parameters)\",\n new Object[] { new Integer(m), new Integer(p)});\n }\n- double[] errors = new double[problem.getAllParameters().length];\n+ double[] errors = new double[problem.getUnboundParameters().length];\n final double c = Math.sqrt(getChiSquare(problem) / (m - p));\n double[][] covar = getCovariances(problem);\n for (int i = 0; i < errors.length; ++i) {\n", + "failingTests": [ + { + "className": " org.apache.commons.math.estimation.GaussNewtonEstimatorTest", + "error": "java.lang.ArrayIndexOutOfBoundsException", + "message": "6", + "methodName": "testBoundParameters" + } + ], + "metrics": { + "chunks": 3, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 3, + "linesRem": 0, + "methods": 2, + "sizeInLines": 3, + "spreadAllLines": 39, + "spreadCodeOnly": 26 + }, + "observations": "Apply the same replace of methods in three different places.", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "assignExpChange", + "mcRepl" + ], + "repairPatterns": [ + "copyPaste", + "wrongMethodRef" + ], + "repairTools": [], + "revisionId": "876d133334e8dde309cc11f884c0dd4cc9ce530e" + }, + { + "bugId": 103, + "changedFiles": { + "org/apache/commons/math/distribution/NormalDistributionImpl.java": { + "inserts": [ + [ + 109 + ], + [ + 111 + ] + ] + } + }, + "diff": "--- a/src/java/org/apache/commons/math/distribution/NormalDistributionImpl.java\n+++ b/src/java/org/apache/commons/math/distribution/NormalDistributionImpl.java\n@@ -106,8 +106,18 @@ public void setStandardDeviation(double sd) {\n * convergence exception is caught and 0 or 1 is returned.\n */\n public double cumulativeProbability(double x) throws MathException {\n+ try {\n return 0.5 * (1.0 + Erf.erf((x - mean) /\n (standardDeviation * Math.sqrt(2.0))));\n+ } catch (MaxIterationsExceededException ex) {\n+ if (x < (mean - 20 * standardDeviation)) { // JDK 1.5 blows at 38\n+ return 0.0d;\n+ } else if (x > (mean + 20 * standardDeviation)) {\n+ return 1.0d;\n+ } else {\n+ throw ex;\n+ }\n+ }\n }\n \n /**\n", + "failingTests": [ + { + "className": " org.apache.commons.math.distribution.NormalDistributionTest", + "error": "org.apache.commons.math.MaxIterationsExceededException", + "message": "Maximal number of iterations (10,000) exceeded", + "methodName": "testExtremeValues" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 10, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 10, + "spreadAllLines": 2, + "spreadCodeOnly": 2 + }, + "observations": "", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "condBranIfElseAdd", + "exThrowsAdd", + "retBranchAdd" + ], + "repairPatterns": [ + "condBlockExcAdd", + "condBlockRetAdd", + "wrapsTryCatch", + "wrongComp" + ], + "repairTools": [], + "revisionId": "4ce05bcd51ec956d789d20b59c743603d24a8ab7" + }, + { + "bugId": 102, + "changedFiles": { + "org/apache/commons/math/stat/inference/ChiSquareTestImpl.java": { + "inserts": [ + [ + 74, + 75, + 76 + ], + [ + 77 + ], + [ + 79 + ] + ] + } + }, + "diff": "--- a/src/java/org/apache/commons/math/stat/inference/ChiSquareTestImpl.java\n+++ b/src/java/org/apache/commons/math/stat/inference/ChiSquareTestImpl.java\n@@ -71,11 +71,28 @@ public double chiSquare(double[] expected, long[] observed)\n throw new IllegalArgumentException(\n \"observed counts must be non-negative and expected counts must be postive\");\n }\n+ double sumExpected = 0d;\n+ double sumObserved = 0d;\n+ for (int i = 0; i < observed.length; i++) {\n+ sumExpected += expected[i];\n+ sumObserved += observed[i];\n+ }\n+ double ratio = 1.0d;\n+ boolean rescale = false;\n+ if (Math.abs(sumExpected - sumObserved) > 10E-6) {\n+ ratio = sumObserved / sumExpected;\n+ rescale = true;\n+ }\n double sumSq = 0.0d;\n double dev = 0.0d;\n for (int i = 0; i < observed.length; i++) {\n+ if (rescale) {\n+ dev = ((double) observed[i] - ratio * expected[i]);\n+ sumSq += dev * dev / (ratio * expected[i]);\n+ } else {\n dev = ((double) observed[i] - expected[i]);\n sumSq += dev * dev / expected[i];\n+ }\n }\n return sumSq;\n }\n", + "failingTests": [ + { + "className": " org.apache.commons.math.stat.inference.ChiSquareFactoryTest", + "error": "junit.framework.AssertionFailedError", + "message": "chi-square test statistic expected:<114875.90421929007> but was:<3624883.3429077636>", + "methodName": "testChiSquareLargeTestStatistic" + }, + { + "className": " org.apache.commons.math.stat.inference.ChiSquareFactoryTest", + "error": "junit.framework.AssertionFailedError", + "message": "chi-square test statistic expected:<9.023307936427388> but was:<16.413107036160778>", + "methodName": "testChiSquare" + }, + { + "className": " org.apache.commons.math.stat.inference.ChiSquareTestTest", + "error": "junit.framework.AssertionFailedError", + "message": "chi-square test statistic expected:<114875.90421929007> but was:<3624883.3429077636>", + "methodName": "testChiSquareLargeTestStatistic" + }, + { + "className": " org.apache.commons.math.stat.inference.ChiSquareTestTest", + "error": 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"repairActions": [ + "assignAdd", + "condBranIfAdd", + "condBranIfElseAdd", + "loopAdd", + "mcAdd", + "varAdd" + ], + "repairPatterns": [ + "condBlockOthersAdd", + "missComp", + "wrapsIfElse" + ], + "repairTools": [], + "revisionId": "a1bac127067c912b4a9f7a2957c427853a36c730" + }, + { + "bugId": 99, + "changedFiles": { + "org/apache/commons/math/util/MathUtils.java": { + "inserts": [ + [ + 543 + ], + [ + 714 + ] + ] + } + }, + "diff": "--- a/src/java/org/apache/commons/math/util/MathUtils.java\n+++ b/src/java/org/apache/commons/math/util/MathUtils.java\n@@ -540,6 +540,11 @@ public static int gcd(final int p, final int q) {\n int u = p;\n int v = q;\n if ((u == 0) || (v == 0)) {\n+ if ((u == Integer.MIN_VALUE) || (v == Integer.MIN_VALUE)) {\n+ throw MathRuntimeException.createArithmeticException(\n+ \"overflow: gcd({0}, {1}) is 2^31\",\n+ new Object[] { p, q });\n+ }\n return (Math.abs(u) + Math.abs(v));\n }\n // keep u and v negative, as negative integers range down to\n@@ -711,6 +716,9 @@ public static int lcm(int a, int b) {\n return 0;\n }\n int lcm = Math.abs(mulAndCheck(a / gcd(a, b), b));\n+ if (lcm == Integer.MIN_VALUE){\n+ throw new ArithmeticException(\"overflow: lcm is 2^31\");\n+ }\n return lcm;\n }\n \n", + "failingTests": [ + { + "className": " org.apache.commons.math.util.MathUtilsTest", + "error": "junit.framework.AssertionFailedError", + "message": "expecting ArithmeticException", + "methodName": "testGcd" + }, + { + "className": " org.apache.commons.math.util.MathUtilsTest", + "error": "junit.framework.AssertionFailedError", + "message": "Expecting ArithmeticException", + "methodName": "testLcm" + } + ], + "metrics": { + "chunks": 2, + "classes": 1, + "files": 1, + "linesAdd": 8, + "linesMod": 0, + "linesRem": 0, + "methods": 2, + "sizeInLines": 8, + "spreadAllLines": 171, + "spreadCodeOnly": 68 + }, + "observations": "Instantiates a vector object as part of the exception creation.", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "condBranIfAdd", + "exThrowsAdd", + "objInstAdd" + ], + "repairPatterns": [ + "condBlockExcAdd" + ], + "repairTools": [ + "rtAcs" + ], + "revisionId": "58b5609fe8f99aabc990d885bf6c4d85631b7c79" + }, + { + "bugId": 106, + "changedFiles": { + "org/apache/commons/math/fraction/ProperFractionFormat.java": { + "inserts": [ + [ + 164, + 165, + 166, + 167, + 168 + ], + [ + 199, + 200, + 201, + 202 + ] + ] + } + }, + "diff": "--- a/src/java/org/apache/commons/math/fraction/ProperFractionFormat.java\n+++ b/src/java/org/apache/commons/math/fraction/ProperFractionFormat.java\n@@ -162,7 +162,11 @@ public Fraction parse(String source, ParsePosition pos) {\n return null;\r\n }\r\n \r\n+ if (num.intValue() < 0) {\r\n // minus signs should be leading, invalid expression\r\n+ pos.setIndex(initialIndex);\r\n+ return null;\r\n+ }\r\n \r\n // parse '/'\r\n int startIndex = pos.getIndex();\r\n@@ -197,7 +201,11 @@ public Fraction parse(String source, ParsePosition pos) {\n return null;\r\n }\r\n \r\n+ if (den.intValue() < 0) {\r\n // minus signs must be leading, invalid\r\n+ pos.setIndex(initialIndex);\r\n+ return null;\r\n+ }\r\n \r\n int w = whole.intValue();\r\n int n = num.intValue();\r\n", + "failingTests": [ + { + "className": " org.apache.commons.math.fraction.FractionFormatTest", + "error": "junit.framework.AssertionFailedError", + "message": "invalid minus in improper fraction.", + "methodName": "testParseProperInvalidMinus" + } + ], + "metrics": { + "chunks": 4, + "classes": 1, + "files": 1, + "linesAdd": 8, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 8, + "spreadAllLines": 36, + "spreadCodeOnly": 18 + }, + "observations": "Only one variable is different between the two blocks of code in patch.", + "program": "commons-math", + "project": "Math", + "repairActions": [ + "condBranIfAdd", + "mcAdd", + "retBranchAdd" + ], + "repairPatterns": [ + "condBlockRetAdd", + "copyPaste" + ], + "repairTools": [], + "revisionId": "41ba9e00e3bbde990f6821f67f0da2a5575b9ac3" + }, + { + "bugId": 3, + "changedFiles": { + "org/mockito/internal/invocation/InvocationMatcher.java": { + "changes": [ + [ + 127 + ], + [ + 128 + ], + [ + 129 + ], + [ + 130 + ], + [ + 131 + ], + [ + 132 + ] + ], + "inserts": [ + [ + -1 + ] + ] + } + }, + "diff": "--- a/src/org/mockito/internal/invocation/InvocationMatcher.java\n+++ b/src/org/mockito/internal/invocation/InvocationMatcher.java\n@@ -124,10 +124,12 @@ public void captureArgumentsFrom(Invocation invocation) {\n ((CapturesArguments) m).captureFrom(invocation.getArgumentAt(position, Object.class));\n }\n }\n- for (int position = indexOfVararg; position < matchers.size(); position++) {\n- Matcher m = matchers.get(position);\n+ for (Matcher m : uniqueMatcherSet(indexOfVararg)) {\n if (m instanceof CapturesArguments) {\n- ((CapturesArguments) m).captureFrom(invocation.getRawArguments()[position - indexOfVararg]);\n+ Object rawArgument = invocation.getRawArguments()[indexOfVararg];\n+ for (int i = 0; i < Array.getLength(rawArgument); i++) {\n+ ((CapturesArguments) m).captureFrom(Array.get(rawArgument, i));\n+ }\n }\n }\n } else {\n@@ -140,6 +142,18 @@ public void captureArgumentsFrom(Invocation invocation) {\n }\n }\n \n+ private Set uniqueMatcherSet(int indexOfVararg) {\n+ HashSet set = new HashSet();\n+ for (int position = indexOfVararg; position < matchers.size(); position++) {\n+ Matcher matcher = matchers.get(position);\n+ if(matcher instanceof MatcherDecorator) {\n+ set.add(((MatcherDecorator) matcher).getActualMatcher());\n+ } else {\n+ set.add(matcher);\n+ }\n+ }\n+ return set;\n+ }\n \n public static List createFrom(List invocations) {\n LinkedList out = new LinkedList();\n", + "failingTests": [ + { + "className": " org.mockito.internal.invocation.InvocationMatcherTest", + "error": "junit.framework.AssertionFailedError", + "message": "expected:<[['a', 'b']]> but was:<[[1]]>", + "methodName": "should_capture_varargs_as_vararg" + }, + { + "className": " 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durationMillis;\n }\n \n@@ -25,4 +27,9 @@ public void start() {\n startTime = System.currentTimeMillis();\n }\n \n+ private void validateInput(long durationMillis) {\n+ if (durationMillis < 0) {\n+ new Reporter().cannotCreateTimerWithNegativeDurationTime(durationMillis);\n+ }\n+ }\n }\n", + "failingTests": [ + { + "className": " org.mockito.internal.util.TimerTest", + "error": "junit.framework.AssertionFailedError", + "message": "It is forbidden to create timer with negative value of timer's duration.", + "methodName": "should_throw_friendly_reminder_exception_when_duration_is_negative" + }, + { + "className": " org.mockito.verification.NegativeDurationTest", + "error": "junit.framework.AssertionFailedError", + "message": "It is forbidden to invoke Mockito.timeout() with negative value.", + "methodName": "should_throw_exception_when_duration_is_negative_for_timeout_method" + }, + { + "className": " org.mockito.verification.NegativeDurationTest", + "error": "junit.framework.AssertionFailedError", + "message": "It is forbidden to invoke Mockito.after() with negative value.", + "methodName": "should_throw_exception_when_duration_is_negative_for_after_method" + } + ], + "metrics": { + "chunks": 3, + "classes": 1, + "files": 1, + "linesAdd": 7, + "linesMod": 0, + "linesRem": 0, + "methods": 2, + "sizeInLines": 7, + "spreadAllLines": 25, + "spreadCodeOnly": 13 + }, + "observations": "import and instantiate a new Reporter object. It appears as an validation object/procedure.", + "program": "mockito", + "project": "Mockito", + "repairActions": [ + "condBranIfAdd", + "mcAdd", + "mdAdd", + "objInstAdd" + ], + "repairPatterns": [ + "condBlockOthersAdd", + "missComp" + ], + "repairTools": [], + "revisionId": "80452c7a42777513c35fd30c4e12bcd7ee438fb9" + }, + { + "bugId": 1, + "changedFiles": { + "org/mockito/internal/invocation/InvocationMatcher.java": { + "deletes": [ + [ + 123 + ] + ], + "inserts": [ + [ + 123, + 124, + 125 + ] + ] + } + }, + "diff": "--- a/src/org/mockito/internal/invocation/InvocationMatcher.java\n+++ b/src/org/mockito/internal/invocation/InvocationMatcher.java\n@@ -120,7 +120,18 @@ public Location getLocation() {\n public void captureArgumentsFrom(Invocation invocation) {\n if (invocation.getMethod().isVarArgs()) {\n int indexOfVararg = invocation.getRawArguments().length - 1;\n- throw new UnsupportedOperationException();\n+ for (int position = 0; position < indexOfVararg; position++) {\n+ Matcher m = matchers.get(position);\n+ if (m instanceof CapturesArguments) {\n+ ((CapturesArguments) m).captureFrom(invocation.getArgumentAt(position, Object.class));\n+ }\n+ }\n+ for (int position = indexOfVararg; position < matchers.size(); position++) {\n+ Matcher m = matchers.get(position);\n+ if (m instanceof CapturesArguments) {\n+ ((CapturesArguments) m).captureFrom(invocation.getRawArguments()[position - indexOfVararg]);\n+ }\n+ }\n \n } else {\n for (int position = 0; position < matchers.size(); position++) {\n", + "failingTests": [ + { + "className": " org.mockito.internal.invocation.InvocationMatcherTest", + "error": "java.lang.UnsupportedOperationException", + "message": "", + "methodName": "should_capture_arguments_when_args_count_does_NOT_match" + }, + { + "className": " org.mockito.internal.util.reflection.FieldInitializerTest", + "error": "java.lang.UnsupportedOperationException", + "message": "", + "methodName": "can_instantiate_class_with_parameterized_constructor" + 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b/src/org/mockito/internal/util/reflection/GenericMetadataSupport.java\n@@ -376,6 +376,7 @@ private void readTypeVariables() {\n for (Type type : typeVariable.getBounds()) {\r\n registerTypeVariablesOn(type);\r\n }\r\n+ registerTypeParametersOn(new TypeVariable[] { typeVariable });\r\n registerTypeVariablesOn(getActualTypeArgumentFor(typeVariable));\r\n }\r\n \r\n", + "failingTests": [ + { + "className": " org.mockitousage.bugs.deepstubs.DeepStubFailingWhenGenricNestedAsRawTypeTest", + "error": "org.mockito.exceptions.base.MockitoException", + "message": "Raw extraction not supported for : 'null'", + "methodName": "discoverDeepMockingOfGenerics" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 1, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Instantiates and initializes an TypeVariable vector.", + "program": "mockito", + "project": "Mockito", + "repairActions": 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"equals_should_return_true_when_equal" + }, + { + "className": " org.mockito.internal.creation.DelegatingMethodTest", + "error": "junit.framework.AssertionFailedError", + "message": "", + "methodName": "equals_should_return_true_when_self" + } + ], + "metrics": { + "chunks": 3, + "classes": 1, + "files": 1, + "linesAdd": 8, + "linesMod": 1, + "linesRem": 0, + "methods": 2, + "sizeInLines": 9, + "spreadAllLines": 5, + "spreadCodeOnly": 4 + }, + "observations": "", + "program": "mockito", + "project": "Mockito", + "repairActions": [ + "assignAdd", + "condBranIfAdd", + "condBranIfElseAdd", + "mcAdd", + "retBranchAdd", + "retExpChange", + "varAdd" + ], + "repairPatterns": [ + "condBlockRetAdd", + "wrapsIfElse" + ], + "repairTools": [], + "revisionId": "1802cf79c482f2df29abb3d6735bcf0b16cedb7d" + }, + { + "bugId": 10, + "changedFiles": { + "org/mockito/internal/stubbing/defaultanswers/ReturnsDeepStubs.java": { + "changes": [ + [ + 71 + ], + [ + 87 + ], + [ + 90 + ], + [ + 94 + ], + [ + 99 + ] + ], + "inserts": [ + [ + -1 + ], + [ + -1 + ] + ] + } + }, + "diff": "--- a/src/org/mockito/internal/stubbing/defaultanswers/ReturnsDeepStubs.java\n+++ b/src/org/mockito/internal/stubbing/defaultanswers/ReturnsDeepStubs.java\n@@ -14,6 +14,7 @@\n import org.mockito.internal.util.MockUtil;\r\n import org.mockito.internal.util.reflection.GenericMetadataSupport;\r\n import org.mockito.invocation.InvocationOnMock;\r\n+import org.mockito.mock.MockCreationSettings;\r\n import org.mockito.stubbing.Answer;\r\n \r\n import java.io.IOException;\r\n@@ -68,7 +69,7 @@ private Object deepStub(InvocationOnMock invocation, GenericMetadataSupport retu\n \r\n // record deep stub answer\r\n return recordDeepStubAnswer(\r\n- newDeepStubMock(returnTypeGenericMetadata),\r\n+ newDeepStubMock(returnTypeGenericMetadata, invocation.getMock()),\r\n container\r\n );\r\n }\r\n@@ -84,22 +85,26 @@ private Object deepStub(InvocationOnMock invocation, GenericMetadataSupport retu\n * @param parentMock The parent of the current deep stub mock.\r\n * @return The mock\r\n */\r\n- private Object newDeepStubMock(GenericMetadataSupport returnTypeGenericMetadata) {\r\n+ private Object newDeepStubMock(GenericMetadataSupport returnTypeGenericMetadata, Object parentMock) {\r\n+ MockCreationSettings parentMockSettings = new MockUtil().getMockSettings(parentMock);\r\n return mockitoCore().mock(\r\n returnTypeGenericMetadata.rawType(),\r\n- withSettingsUsing(returnTypeGenericMetadata)\r\n+ withSettingsUsing(returnTypeGenericMetadata, parentMockSettings)\r\n );\r\n }\r\n \r\n- private MockSettings withSettingsUsing(GenericMetadataSupport returnTypeGenericMetadata) {\r\n+ private MockSettings withSettingsUsing(GenericMetadataSupport returnTypeGenericMetadata, MockCreationSettings parentMockSettings) {\r\n MockSettings mockSettings = returnTypeGenericMetadata.hasRawExtraInterfaces() ?\r\n withSettings().extraInterfaces(returnTypeGenericMetadata.rawExtraInterfaces())\r\n : withSettings();\r\n \r\n- return mockSettings.serializable()\r\n+ return propagateSerializationSettings(mockSettings, parentMockSettings)\r\n .defaultAnswer(returnsDeepStubsAnswerUsing(returnTypeGenericMetadata));\r\n }\r\n \r\n+ private MockSettings propagateSerializationSettings(MockSettings mockSettings, MockCreationSettings parentMockSettings) {\r\n+ return mockSettings.serializable(parentMockSettings.getSerializableMode());\r\n+ }\r\n \r\n private ReturnsDeepStubs returnsDeepStubsAnswerUsing(final GenericMetadataSupport returnTypeGenericMetadata) {\r\n return new ReturnsDeepStubsSerializationFallback(returnTypeGenericMetadata);\r\n", + "failingTests": [ + { + "className": " org.mockitousage.bugs.DeepStubsWronglyReportsSerializationProblemsTest", + "error": "org.mockito.exceptions.base.MockitoException", + "message": "", + "methodName": "should_not_raise_a_mockito_exception_about_serialization_when_accessing_deep_stub" + } + ], + "metrics": { + "chunks": 7, + "classes": 1, + "files": 1, + "linesAdd": 5, + "linesMod": 5, + "linesRem": 0, + "methods": 4, + "sizeInLines": 10, + "spreadAllLines": 81, + "spreadCodeOnly": 36 + }, + "observations": "Changes signature of existent methods, adding new params.", + "program": "mockito", + "project": "Mockito", + "repairActions": [ + "mcParAdd", + "mcRepl", + "mdAdd", + "mdParAdd", + "objInstAdd", + "retExpChange", + "varAdd" + ], + "repairPatterns": [ + "missComp", + "notClassified" + ], + "repairTools": [], + "revisionId": "1beeae39ac9f79d6a0db285dec311b78025ac062" + }, + { + "bugId": 5, + "changedFiles": { + "org/mockito/internal/verification/VerificationOverTimeImpl.java": { + "changes": [ + [ + 91 + ] + ] + } + }, + "diff": "--- a/src/org/mockito/internal/verification/VerificationOverTimeImpl.java\n+++ b/src/org/mockito/internal/verification/VerificationOverTimeImpl.java\n@@ -88,7 +88,7 @@ public void verify(VerificationData data) {\n } catch (MockitoAssertionError e) {\n error = handleVerifyException(e);\n }\n- catch (org.mockito.exceptions.verification.junit.ArgumentsAreDifferent e) {\n+ catch (AssertionError e) {\n error = handleVerifyException(e);\n }\n }\n", + "failingTests": [ + { + "className": " org.mockitointegration.NoJUnitDependenciesTest", + "error": "junit.framework.AssertionFailedError", + "message": "'org.mockito.internal.verification.VerificationOverTimeImpl' has some dependency to JUnit", + "methodName": "pure_mockito_should_not_depend_JUnit" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Change parameter type in catch command.", + "program": "mockito", + "project": "Mockito", + "repairActions": [ + "varTyChange" + ], + "repairPatterns": [ + "singleLine" + ], + "repairTools": [], + "revisionId": "42a24dde02923185db3f79ae57e7819f7d70af55" + }, + { + "bugId": 6, + "changedFiles": { + "org/mockito/Matchers.java": { + "changes": [ + [ + 122 + ], + [ + 137 + ], + [ + 152 + ], + [ + 167 + ], + [ + 182 + ], + [ + 197 + ], + [ + 212 + ], + [ + 227 + ], + [ + 244 + ], + [ + 292 + ], + [ + 309 + ], + [ + 324 + ], + [ + 339 + ], + [ + 358 + ], + [ + 373 + ], + [ + 392 + ], + [ + 407 + ], + [ + 427 + ], + [ + 442 + ], + [ + 461 + ] + ] + } + }, + "diff": "--- a/src/org/mockito/Matchers.java\n+++ b/src/org/mockito/Matchers.java\n@@ -119,7 +119,7 @@\n * @return false.\r\n */\r\n public static boolean anyBoolean() {\r\n- return reportMatcher(Any.ANY).returnFalse();\r\n+ return reportMatcher(new InstanceOf(Boolean.class)).returnFalse();\r\n }\r\n \r\n /**\r\n@@ -134,7 +134,7 @@ public static boolean anyBoolean() {\n * @return 0.\r\n */\r\n public static byte anyByte() {\r\n- return reportMatcher(Any.ANY).returnZero();\r\n+ return reportMatcher(new InstanceOf(Byte.class)).returnZero();\r\n }\r\n \r\n /**\r\n@@ -149,7 +149,7 @@ public static byte anyByte() {\n * @return 0.\r\n */\r\n public static char anyChar() {\r\n- return reportMatcher(Any.ANY).returnChar();\r\n+ return reportMatcher(new InstanceOf(Character.class)).returnChar();\r\n }\r\n \r\n /**\r\n@@ -164,7 +164,7 @@ public static char anyChar() {\n * @return 0.\r\n */\r\n public static int anyInt() {\r\n- return reportMatcher(Any.ANY).returnZero();\r\n+ return reportMatcher(new InstanceOf(Integer.class)).returnZero();\r\n }\r\n \r\n /**\r\n@@ -179,7 +179,7 @@ public static int anyInt() {\n * @return 0.\r\n */\r\n public static long anyLong() {\r\n- return reportMatcher(Any.ANY).returnZero();\r\n+ return reportMatcher(new InstanceOf(Long.class)).returnZero();\r\n }\r\n \r\n /**\r\n@@ -194,7 +194,7 @@ public static long anyLong() {\n * @return 0.\r\n */\r\n public static float anyFloat() {\r\n- return reportMatcher(Any.ANY).returnZero();\r\n+ return reportMatcher(new InstanceOf(Float.class)).returnZero();\r\n }\r\n \r\n /**\r\n@@ -209,7 +209,7 @@ public static float anyFloat() {\n * @return 0.\r\n */\r\n public static double anyDouble() {\r\n- return reportMatcher(Any.ANY).returnZero();\r\n+ return reportMatcher(new InstanceOf(Double.class)).returnZero();\r\n }\r\n \r\n /**\r\n@@ -224,7 +224,7 @@ public static double anyDouble() {\n * @return 0.\r\n */\r\n public static short anyShort() {\r\n- return reportMatcher(Any.ANY).returnZero();\r\n+ return reportMatcher(new InstanceOf(Short.class)).returnZero();\r\n }\r\n \r\n /**\r\n@@ -241,7 +241,7 @@ public static short anyShort() {\n * @return null.\r\n */\r\n public static T anyObject() {\r\n- return (T) reportMatcher(Any.ANY).returnNull();\r\n+ return (T) reportMatcher(new InstanceOf(Object.class)).returnNull();\r\n }\r\n \r\n /**\r\n@@ -289,7 +289,7 @@ public static short anyShort() {\n * @return null.\r\n */\r\n public static T any(Class clazz) {\r\n- return (T) reportMatcher(Any.ANY).returnFor(clazz);\r\n+ return (T) reportMatcher(new InstanceOf(clazz)).returnFor(clazz);\r\n }\r\n \r\n /**\r\n@@ -306,7 +306,7 @@ public static short anyShort() {\n * @return null.\r\n */\r\n public static T any() {\r\n- return (T) anyObject();\r\n+ return (T) reportMatcher(Any.ANY).returnNull();\r\n }\r\n \r\n /**\r\n@@ -321,7 +321,7 @@ public static short anyShort() {\n * @return empty String (\"\")\r\n */\r\n public static String anyString() {\r\n- return reportMatcher(Any.ANY).returnString();\r\n+ return reportMatcher(new InstanceOf(String.class)).returnString();\r\n }\r\n \r\n /**\r\n@@ -336,7 +336,7 @@ public static String anyString() {\n * @return empty List.\r\n */\r\n public static List anyList() {\r\n- return reportMatcher(Any.ANY).returnList();\r\n+ return reportMatcher(new InstanceOf(List.class)).returnList();\r\n } \r\n \r\n /**\r\n@@ -355,7 +355,7 @@ public static List anyList() {\n * @return empty List.\r\n */\r\n public static List anyListOf(Class clazz) {\r\n- return (List) reportMatcher(Any.ANY).returnList();\r\n+ return anyList();\r\n } \r\n \r\n /**\r\n@@ -370,7 +370,7 @@ public static List anyList() {\n * @return empty Set\r\n */\r\n public static Set anySet() {\r\n- return reportMatcher(Any.ANY).returnSet();\r\n+ return reportMatcher(new InstanceOf(Set.class)).returnSet();\r\n }\r\n \r\n /**\r\n@@ -389,7 +389,7 @@ public static Set anySet() {\n * @return empty Set\r\n */\r\n public static Set anySetOf(Class clazz) {\r\n- return (Set) reportMatcher(Any.ANY).returnSet();\r\n+ return anySet();\r\n }\r\n \r\n /**\r\n@@ -404,7 +404,7 @@ public static Set anySet() {\n * @return empty Map.\r\n */\r\n public static Map anyMap() {\r\n- return reportMatcher(Any.ANY).returnMap();\r\n+ return reportMatcher(new InstanceOf(Map.class)).returnMap();\r\n }\r\n \r\n /**\r\n@@ -424,7 +424,7 @@ public static Map anyMap() {\n * @return empty Map.\r\n */\r\n public static Map anyMapOf(Class keyClazz, Class valueClazz) {\r\n- return reportMatcher(Any.ANY).returnMap();\r\n+ return anyMap();\r\n }\r\n \r\n /**\r\n@@ -439,7 +439,7 @@ public static Map anyMap() {\n * @return empty Collection.\r\n */\r\n public static Collection anyCollection() {\r\n- return reportMatcher(Any.ANY).returnList();\r\n+ return reportMatcher(new InstanceOf(Collection.class)).returnList();\r\n } \r\n \r\n /**\r\n@@ -458,7 +458,7 @@ public static Collection anyCollection() {\n * @return empty Collection.\r\n */\r\n public static Collection anyCollectionOf(Class clazz) {\r\n- return (Collection) reportMatcher(Any.ANY).returnList();\r\n+ return anyCollection();\r\n } \r\n \r\n /**\r\n", + "failingTests": [ + { + "className": " org.mockitousage.matchers.AnyXMatchersAcceptNullsTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected: but was:<0>", + "methodName": "shouldNotAcceptNullInAllAnyPrimitiveWrapperMatchers" + }, + { + "className": " org.mockitousage.matchers.AnyXMatchersAcceptNullsTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected: but was:<0>", + "methodName": "shouldNotAcceptNullInAnyXMatchers" + }, + { + "className": " org.mockitousage.matchers.MatchersTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected: but was:", + "methodName": "anyStringMatcher" + }, + { + "className": " org.mockitousage.matchers.NewMatchersTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected: but was:", + "methodName": "shouldAllowAnyCollection" + }, + { + "className": " org.mockitousage.matchers.NewMatchersTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected: but was:", + "methodName": "shouldAllowAnyList" + }, + { + "className": " org.mockitousage.matchers.NewMatchersTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected: but was:", + "methodName": "shouldAllowAnyMap" + }, + { + "className": " org.mockitousage.matchers.NewMatchersTest", + "error": "junit.framework.ComparisonFailure", + "message": "expected: but was:", + "methodName": "shouldAllowAnySet" + } + ], + "metrics": { + "chunks": 20, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 20, + "linesRem": 0, + "methods": 20, + "sizeInLines": 20, + "spreadAllLines": 320, + "spreadCodeOnly": 41 + }, + "observations": "Instantiates specific objects in place of call do Any.ANY", + "program": "mockito", + "project": "Mockito", + "repairActions": [ + "mcParValChange", + "objInstAdd", + "varReplMc" + ], + "repairPatterns": [ + "copyPaste", + "wrongMethodRef", + "wrongVarRef" + ], + "repairTools": [], + "revisionId": "dc205824dbc289acbcde919e430176ad72da847f" + }, + { + "bugId": 9, + "changedFiles": { + "org/mockito/internal/stubbing/answers/CallsRealMethods.java": { + "inserts": [ + [ + -1 + ], + [ + -1 + ], + [ + 36 + ] + ] + } + }, + "diff": "--- a/src/org/mockito/internal/stubbing/answers/CallsRealMethods.java\n+++ b/src/org/mockito/internal/stubbing/answers/CallsRealMethods.java\n@@ -5,7 +5,9 @@\n package org.mockito.internal.stubbing.answers;\r\n \r\n import java.io.Serializable;\n+import java.lang.reflect.Modifier;\n \n+import org.mockito.internal.stubbing.defaultanswers.GloballyConfiguredAnswer;\n import org.mockito.invocation.InvocationOnMock;\n import org.mockito.stubbing.Answer;\n \r\n@@ -33,6 +35,9 @@\n private static final long serialVersionUID = 9057165148930624087L;\r\n \r\n public Object answer(InvocationOnMock invocation) throws Throwable {\n+ \tif (Modifier.isAbstract(invocation.getMethod().getModifiers())) {\n+ \t\treturn new GloballyConfiguredAnswer().answer(invocation);\n+ \t}\n return invocation.callRealMethod();\r\n }\r\n }\n\\ No newline at end of file\n", + "failingTests": [ + { + "className": " org.mockitousage.constructor.CreatingMocksWithConstructorTest", + "error": "org.mockito.exceptions.base.MockitoException", + "message": "", + "methodName": "abstractMethodStubbed" + }, + { + "className": " org.mockitousage.constructor.CreatingMocksWithConstructorTest", + "error": "org.mockito.exceptions.base.MockitoException", + "message": "", + "methodName": "testCallsRealInterfaceMethod" + }, + { + "className": " org.mockitousage.constructor.CreatingMocksWithConstructorTest", + "error": "org.mockito.exceptions.base.MockitoException", + "message": "", + "methodName": "abstractMethodReturnsDefault" + } + ], + "metrics": { + "chunks": 3, + "classes": 1, + "files": 1, + "linesAdd": 5, + "linesMod": 0, + "linesRem": 0, + "methods": 1, + "sizeInLines": 5, + "spreadAllLines": 28, + "spreadCodeOnly": 5 + }, + "observations": "", + "program": "mockito", + "project": "Mockito", + "repairActions": [ + "condBranIfAdd", + "mcAdd", + "objInstAdd", + "retBranchAdd" + ], + "repairPatterns": [ + "condBlockRetAdd" + ], + "repairTools": [], + "revisionId": "31f908029b8cd9b1f32bed3a41651b30ebb47b9f" + }, + { + "bugId": 8, + "changedFiles": { + "org/mockito/internal/util/reflection/GenericMetadataSupport.java": { + "changes": [ + [ + 79 + ] + ] + } + }, + "diff": "--- a/src/org/mockito/internal/util/reflection/GenericMetadataSupport.java\n+++ b/src/org/mockito/internal/util/reflection/GenericMetadataSupport.java\n@@ -76,7 +76,7 @@ protected void registerTypeVariablesOn(Type classType) {\n \r\n if (actualTypeArgument instanceof WildcardType) {\r\n contextualActualTypeParameters.put(typeParameter, boundsOf((WildcardType) actualTypeArgument));\r\n- } else {\r\n+ } else if (typeParameter != actualTypeArgument) {\r\n contextualActualTypeParameters.put(typeParameter, actualTypeArgument);\r\n }\r\n // logger.log(\"For '\" + parameterizedType + \"' found type variable : { '\" + typeParameter + \"(\" + System.identityHashCode(typeParameter) + \")\" + \"' : '\" + actualTypeArgument + \"(\" + System.identityHashCode(typeParameter) + \")\" + \"' }\");\r\n", + "failingTests": [ + { + "className": " org.mockito.internal.util.reflection.GenericMetadataSupportTest", + "error": "java.lang.StackOverflowError", + "message": "", + "methodName": "typeVariable_of_self_type" + } + ], + "metrics": { + "chunks": 1, + "classes": 1, + "files": 1, + "linesAdd": 0, + "linesMod": 1, + "linesRem": 0, + "methods": 1, + "sizeInLines": 1, + "spreadAllLines": 0, + "spreadCodeOnly": 0 + }, + "observations": "Replaced and \"else\" with an \"else if\"", + "program": "mockito", + "project": "Mockito", + "repairActions": [ + "condBranIfAdd" + ], + "repairPatterns": [ + "singleLine", + "wrapsIf" + ], + "repairTools": [], + "revisionId": "5a03bf5d0c9aedac9cfbf074833167c1eca6439f" + }, + { + "bugId": 16, + "changedFiles": { + "org/mockito/Mockito.java": { + "changes": [ + [ + 827 + ], + [ + 899 + ] + ] + }, + "org/mockito/internal/MockitoCore.java": { + "changes": [ + [ + 33 + ] + ], + "deletes": [ + [ + 32 + ] + ], + "inserts": [ + [ + 35 + ], + [ + 36 + ] + ] + } + }, + "diff": "--- a/src/org/mockito/Mockito.java\n+++ b/src/org/mockito/Mockito.java\n@@ -1,921 +1,921 @@\n /*\r\n * Copyright (c) 2007 Mockito contributors\r\n * This program is made available under the terms of the MIT License.\r\n */\r\n package org.mockito;\r\n \r\n import org.mockito.internal.MockitoCore;\r\n import org.mockito.internal.creation.MockSettingsImpl;\r\n import org.mockito.internal.debugging.MockitoDebuggerImpl;\r\n import org.mockito.internal.stubbing.answers.*;\r\n import org.mockito.internal.stubbing.defaultanswers.*;\r\n import org.mockito.internal.verification.VerificationModeFactory;\r\n import org.mockito.internal.verification.api.VerificationMode;\r\n import org.mockito.runners.MockitoJUnitRunner;\r\n import org.mockito.stubbing.*;\r\n \r\n /**\r\n *

\r\n * Mockito library enables mocks creation, verification and stubbing.\r\n *

\r\n * This javadoc content is also available on the http://mockito.org web page. \r\n * All documentation is kept in javadocs because it guarantees consistency between what's on the web and what's in the source code.\r\n * Also, it makes possible to access documentation straight from the IDE even if you work offline. \r\n * \r\n *

Contents

\r\n * \r\n * \r\n * 1. Let's verify some behaviour!
\r\n * 2. How about some stubbing?
\r\n * 3. Argument matchers
\r\n * 4. Verifying exact number of invocations / at least once / never
\r\n * 5. Stubbing void methods with exceptions
\r\n * 6. Verification in order
\r\n * 7. Making sure interaction(s) never happened on mock
\r\n * 8. Finding redundant invocations
\r\n * 9. Shorthand for mocks creation - @Mock annotation
\r\n * 10. Stubbing consecutive calls (iterator-style stubbing)
\r\n * 11. Stubbing with callbacks
\r\n * 12. doThrow()|doAnswer()|doNothing()|doReturn() family of methods mostly for stubbing voids
\r\n * 13. Spying on real objects
\r\n * 14. Changing default return values of unstubbed invocations (Since 1.7)
\r\n * 15. Capturing arguments for further assertions (Since 1.8.0)
\r\n * 16. Real partial mocks (Since 1.8.0)
\r\n * 17. Resetting mocks (Since 1.8.0)
\r\n * 18. Troubleshooting & validating framework usage (Since 1.8.0)
\r\n * 19. Aliases for behavior driven development (Since 1.8.0)
\r\n * 20. (**New**) Serializable mocks (Since 1.8.1)
\r\n * \r\n * \r\n *

\r\n * Following examples mock a List, because everyone knows its interface (methods\r\n * like add(), get(), clear() will be used).
\r\n * You probably wouldn't mock List class 'in real'.\r\n * \r\n *

1. Let's verify some behaviour!

\r\n * \r\n * 
\r\n  * //Let's import Mockito statically so that the code looks clearer\r\n  * import static org.mockito.Mockito.*;\r\n  * \r\n  * //mock creation\r\n  * List mockedList = mock(List.class);\r\n  *\r\n  * //using mock object\r\n  * mockedList.add(\"one\");\r\n  * mockedList.clear();\r\n  *\r\n  * //verification\r\n  * verify(mockedList).add(\"one\");\r\n  * verify(mockedList).clear();\r\n  *
\r\n * \r\n *

\r\n * Once created, mock will remember all interactions. Then you can selectively\r\n * verify whatever interaction you are interested in.\r\n * \r\n *

2. How about some stubbing?

\r\n * \r\n * 
\r\n  * //You can mock concrete classes, not only interfaces\r\n  * LinkedList mockedList = mock(LinkedList.class);\r\n  * \r\n  * //stubbing\r\n  * when(mockedList.get(0)).thenReturn(\"first\");\r\n  * when(mockedList.get(1)).thenThrow(new RuntimeException());\r\n  * \r\n  * //following prints \"first\"\r\n  * System.out.println(mockedList.get(0));\r\n  * \r\n  * //following throws runtime exception\r\n  * System.out.println(mockedList.get(1));\r\n  * \r\n  * //following prints \"null\" because get(999) was not stubbed\r\n  * System.out.println(mockedList.get(999));\r\n  *  \r\n  * //Although it is possible to verify a stubbed invocation, usually it's just redundant\r\n  * //If your code cares what get(0) returns then something else breaks (often before even verify() gets executed).\r\n  * //If your code doesn't care what get(0) returns then it should not be stubbed. Not convinced? See here.\r\n  * verify(mockedList).get(0);\r\n  *
\r\n * \r\n *
    \r\n *
  • By default, for all methods that return value, mock returns null, an\r\n * empty collection or appropriate primitive/primitive wrapper value (e.g: 0,\r\n * false, ... for int/Integer, boolean/Boolean, ...).
    • \r\n * \r\n *
  • Stubbing can be overridden: for example common stubbing can go to\r\n * fixture setup but the test methods can override it.\r\n * Please note that overridding stubbing is a potential code smell that points out too much stubbing
    • \r\n * \r\n *
  • Once stubbed, the method will always return stubbed value regardless\r\n * of how many times it is called.
    • \r\n * \r\n *
  • Last stubbing is more important - when you stubbed the same method with\r\n * the same arguments many times.
    • \r\n * \r\n *
\r\n * \r\n *

3. Argument matchers

\r\n * \r\n * Mockito verifies argument values in natural java style: by using an equals() method.\r\n * Sometimes, when extra flexibility is required then you might use argument matchers: \r\n * \r\n * 
\r\n  * //stubbing using built-in anyInt() argument matcher\r\n  * when(mockedList.get(anyInt())).thenReturn(\"element\");\r\n  * \r\n  * //stubbing using hamcrest (let's say isValid() returns your own hamcrest matcher):\r\n  * when(mockedList.contains(argThat(isValid()))).thenReturn(\"element\");\r\n  * \r\n  * //following prints \"element\"\r\n  * System.out.println(mockedList.get(999));\r\n  * \r\n  * //you can also verify using an argument matcher\r\n  * verify(mockedList).get(anyInt());\r\n  *
\r\n * \r\n *

\r\n * Argument matchers allow flexible verification or stubbing. \r\n * {@link Matchers Click here to see} more built-in matchers \r\n * and examples of custom argument matchers / hamcrest matchers.\r\n *

\r\n * For information solely on custom argument matchers check out javadoc for {@link ArgumentMatcher} class.\r\n *

\r\n * Be reasonable with using complicated argument matching.\r\n * The natural matching style using equals() with occasional anyX() matchers tend to give clean & simple tests.\r\n * Sometimes it's just better to refactor the code to allow equals() matching or even implement equals() method to help out with testing.\r\n *

\r\n * Also, read section 15 or javadoc for {@link ArgumentCaptor} class.\r\n * {@link ArgumentCaptor} is a special implementation of an argument matcher that captures argument values for further assertions. \r\n *

\r\n * Warning on argument matchers:\r\n *

\r\n * If you are using argument matchers, all arguments have to be provided\r\n * by matchers.\r\n *

\r\n * E.g: (example shows verification but the same applies to stubbing):\r\n * \r\n * 

\r\n  *   verify(mock).someMethod(anyInt(), anyString(), eq(\"third argument\"));\r\n  *   //above is correct - eq() is also an argument matcher\r\n  *   \r\n  *   verify(mock).someMethod(anyInt(), anyString(), \"third argument\");\r\n  *   //above is incorrect - exception will be thrown because third argument is given without an argument matcher.\r\n  *
\r\n * \r\n *

4. Verifying exact number of invocations / at least x / never

\r\n * \r\n * 
\r\n  * //using mock \r\n  * mockedList.add(\"once\");\r\n  * \r\n  * mockedList.add(\"twice\");\r\n  * mockedList.add(\"twice\");\r\n  * \r\n  * mockedList.add(\"three times\");\r\n  * mockedList.add(\"three times\");\r\n  * mockedList.add(\"three times\");\r\n  * \r\n  * //following two verifications work exactly the same - times(1) is used by default\r\n  * verify(mockedList).add(\"once\");\r\n  * verify(mockedList, times(1)).add(\"once\");\r\n  * \r\n  * //exact number of invocations verification\r\n  * verify(mockedList, times(2)).add(\"twice\");\r\n  * verify(mockedList, times(3)).add(\"three times\");\r\n  * \r\n  * //verification using never(). never() is an alias to times(0)\r\n  * verify(mockedList, never()).add(\"never happened\");\r\n  * \r\n  * //verification using atLeast()/atMost()\r\n  * verify(mockedList, atLeastOnce()).add(\"three times\");\r\n  * verify(mockedList, atLeast(2)).add(\"five times\");\r\n  * verify(mockedList, atMost(5)).add(\"three times\");\r\n  * \r\n  *
\r\n * \r\n *

\r\n * times(1) is the default. Therefore using times(1) explicitly can be\r\n * omitted.\r\n * \r\n *

5. Stubbing void methods with exceptions

\r\n * \r\n * 
\r\n  *   doThrow(new RuntimeException()).when(mockedList).clear();\r\n  *   \r\n  *   //following throws RuntimeException:\r\n  *   mockedList.clear();\r\n  *
\r\n * \r\n * Read more about doThrow|doAnswer family of methods in paragraph 12.\r\n *

\r\n * Initially, {@link Mockito#stubVoid(Object)} was used for stubbing voids.\r\n * Currently stubVoid() is deprecated in favor of {@link Mockito#doThrow(Throwable)}.\r\n * This is because of improved readability and consistency with the family of {@link Mockito#doAnswer(Answer)} methods. \r\n * \r\n *

6. Verification in order

\r\n * \r\n * 
\r\n  * List firstMock = mock(List.class);\r\n  * List secondMock = mock(List.class);\r\n  * \r\n  * //using mocks\r\n  * firstMock.add(\"was called first\");\r\n  * secondMock.add(\"was called second\");\r\n  * \r\n  * //create inOrder object passing any mocks that need to be verified in order\r\n  * InOrder inOrder = inOrder(firstMock, secondMock);\r\n  * \r\n  * //following will make sure that firstMock was called before secondMock\r\n  * inOrder.verify(firstMock).add(\"was called first\");\r\n  * inOrder.verify(secondMock).add(\"was called second\");\r\n  *
\r\n * \r\n * Verification in order is flexible - you don't have to verify all\r\n * interactions one-by-one but only those that you are interested in\r\n * testing in order.\r\n *

\r\n * Also, you can create InOrder object passing only mocks that are relevant for\r\n * in-order verification.\r\n * \r\n *

7. Making sure interaction(s) never happened on mock

\r\n * \r\n * 
\r\n  * //using mocks - only mockOne is interacted\r\n  * mockOne.add(\"one\");\r\n  * \r\n  * //ordinary verification\r\n  * verify(mockOne).add(\"one\");\r\n  * \r\n  * //verify that method was never called on a mock\r\n  * verify(mockOne, never()).add(\"two\");\r\n  * \r\n  * //verify that other mocks were not interacted\r\n  * verifyZeroInteractions(mockTwo, mockThree);\r\n  * \r\n  *
\r\n * \r\n *

8. Finding redundant invocations

\r\n * \r\n * 
\r\n  * //using mocks\r\n  * mockedList.add(\"one\");\r\n  * mockedList.add(\"two\");\r\n  * \r\n  * verify(mockedList).add(\"one\");\r\n  * \r\n  * //following verification will fail \r\n  * verifyNoMoreInteractions(mockedList);\r\n  *
\r\n * \r\n * A word of warning: \r\n * Some users who did a lot of classic, expect-run-verify mocking tend to use verifyNoMoreInteractions() very often, even in every test method. \r\n * verifyNoMoreInteractions() is not recommended to use in every test method. \r\n * verifyNoMoreInteractions() is a handy assertion from the interaction testing toolkit. Use it only when it's relevant.\r\n * Abusing it leads to overspecified, less maintainable tests. You can find further reading \r\n * here.\r\n * \r\n *

\r\n * See also {@link Mockito#never()} - it is more explicit and\r\n * communicates the intent well.\r\n *

\r\n * \r\n *

9. Shorthand for mocks creation - @Mock annotation

\r\n * \r\n *
    \r\n *
  • Minimizes repetitive mock creation code.
    • \r\n *
  • Makes the test class more readable.
    • \r\n *
  • Makes the verification error easier to read because the field name\r\n * is used to identify the mock.
    • \r\n *
\r\n * \r\n * 
\r\n  *   public class ArticleManagerTest { \r\n  *     \r\n  *       @Mock private ArticleCalculator calculator;\r\n  *       @Mock private ArticleDatabase database;\r\n  *       @Mock private UserProvider userProvider;\r\n  *     \r\n  *       private ArticleManager manager;\r\n  *
\r\n * \r\n * Important! This needs to be somewhere in the base class or a test\r\n * runner:\r\n * \r\n * 
\r\n  * MockitoAnnotations.initMocks(testClass);\r\n  *
\r\n * \r\n * You can use built-in runner: {@link MockitoJUnitRunner}.\r\n *

\r\n * Read more here: {@link MockitoAnnotations}\r\n * \r\n *

10. Stubbing consecutive calls (iterator-style stubbing)

\r\n * \r\n * Sometimes we need to stub with different return value/exception for the same\r\n * method call. Typical use case could be mocking iterators. \r\n * Original version of Mockito did not have this feature to promote simple mocking. \r\n * For example, instead of iterators one could use {@link Iterable} or simply\r\n * collections. Those offer natural ways of stubbing (e.g. using real\r\n * collections). In rare scenarios stubbing consecutive calls could be useful,\r\n * though:\r\n *

\r\n * \r\n * 

\r\n  * when(mock.someMethod(\"some arg\"))\r\n  *   .thenThrow(new RuntimeException())\r\n  *   .thenReturn(\"foo\");\r\n  * \r\n  * //First call: throws runtime exception:\r\n  * mock.someMethod(\"some arg\");\r\n  * \r\n  * //Second call: prints \"foo\"\r\n  * System.out.println(mock.someMethod(\"some arg\"));\r\n  * \r\n  * //Any consecutive call: prints \"foo\" as well (last stubbing wins). \r\n  * System.out.println(mock.someMethod(\"some arg\"));\r\n  *
\r\n * \r\n * Alternative, shorter version of consecutive stubbing:\r\n * \r\n * 
\r\n  * when(mock.someMethod(\"some arg\"))\r\n  *   .thenReturn(\"one\", \"two\", \"three\");\r\n  *
\r\n * \r\n *

11. Stubbing with callbacks

\r\n * \r\n * Allows stubbing with generic {@link Answer} interface.\r\n *

\r\n * Yet another controversial feature which was not included in Mockito\r\n * originally. We recommend using simple stubbing with thenReturn() or\r\n * thenThrow() only. Those two should be just enough to test/test-drive\r\n * any clean & simple code.\r\n * \r\n * 

\r\n  * when(mock.someMethod(anyString())).thenAnswer(new Answer() {\r\n  *     Object answer(InvocationOnMock invocation) {\r\n  *         Object[] args = invocation.getArguments();\r\n  *         Object mock = invocation.getMock();\r\n  *         return \"called with arguments: \" + args;\r\n  *     }\r\n  * });\r\n  * \r\n  * //Following prints \"called with arguments: foo\"\r\n  * System.out.println(mock.someMethod(\"foo\"));\r\n  *
\r\n * \r\n *

12. doThrow()|doAnswer()|doNothing()|doReturn() family of methods for stubbing voids (mostly)

\r\n * \r\n * Stubbing voids requires different approach from {@link Mockito#when(Object)} because the compiler does not like void methods inside brackets...\r\n *

\r\n * {@link Mockito#doThrow(Throwable)} replaces the {@link Mockito#stubVoid(Object)} method for stubbing voids. \r\n * The main reason is improved readability and consistency with the family of doAnswer() methods.\r\n *

\r\n * Use doThrow() when you want to stub a void method with an exception:\r\n * 

\r\n  *   doThrow(new RuntimeException()).when(mockedList).clear();\r\n  *   \r\n  *   //following throws RuntimeException:\r\n  *   mockedList.clear();\r\n  *
\r\n * \r\n * Read more about other methods:\r\n *

\r\n * {@link Mockito#doThrow(Throwable)}\r\n *

\r\n * {@link Mockito#doAnswer(Answer)}\r\n *

\r\n * {@link Mockito#doNothing()}\r\n *

\r\n * {@link Mockito#doReturn(Object)}\r\n * \r\n *

13. Spying on real objects

\r\n * \r\n * You can create spies of real objects. When you use the spy then the real methods are called (unless a method was stubbed).\r\n *

\r\n * Real spies should be used carefully and occasionally, for example when dealing with legacy code.\r\n * \r\n *

\r\n * Spying on real objects can be associated with \"partial mocking\" concept. \r\n * Before the release 1.8, Mockito spies were not real partial mocks. \r\n * The reason was we thought partial mock is a code smell. \r\n * At some point we found legitimate use cases for partial mocks \r\n * (3rd party interfaces, interim refactoring of legacy code, the full article is here)\r\n *

\r\n *\r\n * 

\r\n  *   List list = new LinkedList();\r\n  *   List spy = spy(list);\r\n  * \r\n  *   //optionally, you can stub out some methods:\r\n  *   when(spy.size()).thenReturn(100);\r\n  * \r\n  *   //using the spy calls real methods\r\n  *   spy.add(\"one\");\r\n  *   spy.add(\"two\");\r\n  * \r\n  *   //prints \"one\" - the first element of a list\r\n  *   System.out.println(spy.get(0));\r\n  * \r\n  *   //size() method was stubbed - 100 is printed\r\n  *   System.out.println(spy.size());\r\n  * \r\n  *   //optionally, you can verify\r\n  *   verify(spy).add(\"one\");\r\n  *   verify(spy).add(\"two\");\r\n  *
\r\n * \r\n *

Important gotcha on spying real objects!

\r\n * \r\n * 1. Sometimes it's impossible to use {@link Mockito#when(Object)} for stubbing spies. Example:\r\n * \r\n * 
\r\n  *   List list = new LinkedList();\r\n  *   List spy = spy(list);\r\n  *   \r\n  *   //Impossible: real method is called so spy.get(0) throws IndexOutOfBoundsException (the list is yet empty)\r\n  *   when(spy.get(0)).thenReturn(\"foo\");\r\n  *   \r\n  *   //You have to use doReturn() for stubbing\r\n  *   doReturn(\"foo\").when(spy).get(0);\r\n  *
\r\n * \r\n * 2. Watch out for final methods. \r\n * Mockito doesn't mock final methods so the bottom line is: when you spy on real objects + you try to stub a final method = trouble.\r\n * What will happen is the real method will be called *on mock* but *not on the real instance* you passed to the spy() method.\r\n * Typically you may get a NullPointerException because mock instances don't have fields initiated.\r\n * \r\n *

14. Changing default return values of unstubbed invocations (Since 1.7)

\r\n * \r\n * You can create a mock with specified strategy for its return values.\r\n * It's quite advanced feature and typically you don't need it to write decent tests.\r\n * However, it can be helpful for working with legacy systems.\r\n *

\r\n * It is the default answer so it will be used only when you don't stub the method call.\r\n * \r\n * 

\r\n  *   Foo mock = mock(Foo.class, Mockito.RETURNS_SMART_NULLS);\r\n  *   Foo mockTwo = mock(Foo.class, new YourOwnAnswer()); \r\n  *
\r\n * \r\n *

\r\n * Read more about this interesting implementation of Answer: {@link Mockito#RETURNS_SMART_NULLS}\r\n * \r\n *

15. Capturing arguments for further assertions (Since 1.8.0)

\r\n * \r\n * Mockito verifies argument values in natural java style: by using an equals() method.\r\n * This is also the recommended way of matching arguments because it makes tests clean & simple.\r\n * In some situations though, it is helpful to assert on certain arguments after the actual verification.\r\n * For example:\r\n * 
\r\n  *   ArgumentCaptor<Person> argument = ArgumentCaptor.forClass(Person.class);\r\n  *   verify(mock).doSomething(argument.capture());\r\n  *   assertEquals(\"John\", argument.getValue().getName());\r\n  *
\r\n * \r\n * Warning: it is recommended to use ArgumentCaptor with verification but not with stubbing.\r\n * Using ArgumentCaptor with stubbing may decrease test readability because captor is created outside of assert (aka verify or 'then') block.\r\n * Also it may reduce defect localization because if stubbed method was not called then no argument is captured.\r\n *

\r\n * In a way ArgumentCaptor is related to custom argument matchers (see javadoc for {@link ArgumentMatcher} class).\r\n * Both techniques can be used for making sure certain arguments where passed to mocks. \r\n * However, ArgumentCaptor may be a better fit if:\r\n *

    \r\n *
  • custom argument matcher is not likely to be reused
    • \r\n *
  • you just need it to assert on argument values to complete verification
    • \r\n *
\r\n * Custom argument matchers via {@link ArgumentMatcher} are usually better for stubbing.\r\n * \r\n *

16. Real partial mocks (Since 1.8.0)

\r\n * \r\n * Finally, after many internal debates & discussions on the mailing list, partial mock support was added to Mockito.\r\n * Previously we considered partial mocks as code smells. However, we found a legitimate use case for partial mocks - more reading:\r\n * here\r\n *

\r\n * Before release 1.8 spy() was not producing real partial mocks and it was confusing for some users.\r\n * Read more about spying: here or in javadoc for {@link Mockito#spy(Object)} method. \r\n *

\r\n * 

\r\n  *    //you can create partial mock with spy() method:    \r\n  *    List list = spy(new LinkedList());\r\n  *    \r\n  *    //you can enable partial mock capabilities selectively on mocks:\r\n  *    Foo mock = mock(Foo.class);\r\n  *    //Be sure the real implementation is 'safe'.\r\n  *    //If real implementation throws exceptions or depends on specific state of the object then you're in trouble.\r\n  *    when(mock.someMethod()).thenCallRealMethod();\r\n  *
\r\n * \r\n * As usual you are going to read the partial mock warning:\r\n * Object oriented programming is more less tackling complexity by dividing the complexity into separate, specific, SRPy objects.\r\n * How does partial mock fit into this paradigm? Well, it just doesn't... \r\n * Partial mock usually means that the complexity has been moved to a different method on the same object.\r\n * In most cases, this is not the way you want to design your application.\r\n *

\r\n * However, there are rare cases when partial mocks come handy: \r\n * dealing with code you cannot change easily (3rd party interfaces, interim refactoring of legacy code etc.)\r\n * However, I wouldn't use partial mocks for new, test-driven & well-designed code.\r\n * \r\n *

17. Resetting mocks (Since 1.8.0)

\r\n * \r\n * Smart Mockito users hardly use this feature because they know it could be a sign of poor tests.\r\n * Normally, you don't need to reset your mocks, just create new mocks for each test method. \r\n *

\r\n * Instead of reset() please consider writing simple, small and focused test methods over lengthy, over-specified tests.\r\n * First potential code smell is reset() in the middle of the test method. This probably means you're testing too much.\r\n * Follow the whisper of your test methods: \"Please keep us small & focused on single behavior\". \r\n * There are several threads about it on mockito mailing list.\r\n *

\r\n * The only reason we added reset() method is to\r\n * make it possible to work with container-injected mocks.\r\n * See issue 55 (here)\r\n * or FAQ (here).\r\n *

\r\n * Don't harm yourself. reset() in the middle of the test method is a code smell (you're probably testing too much). \r\n * 

\r\n  *   List mock = mock(List.class);\r\n  *   when(mock.size()).thenReturn(10);\r\n  *   mock.add(1);\r\n  *   \r\n  *   reset(mock);\r\n  *   //at this point the mock forgot any interactions & stubbing\r\n  *
\r\n * \r\n *

18. Troubleshooting & validating framework usage (Since 1.8.0)

\r\n * \r\n * First of all, in case of any trouble, I encourage you to read the Mockito FAQ: \r\n * http://code.google.com/p/mockito/wiki/FAQ\r\n *

\r\n * In case of questions you may also post to mockito mailing list: \r\n * http://groups.google.com/group/mockito\r\n *

\r\n * Next, you should know that Mockito validates if you use it correctly all the time. \r\n * However, there's a gotcha so please read the javadoc for {@link Mockito#validateMockitoUsage()}\r\n * \r\n *

19. Aliases for behavior driven development (Since 1.8.0)

\r\n * \r\n * Behavior Driven Development style of writing tests uses //given //when //then comments as fundamental parts of your test methods.\r\n * This is exactly how we write our tests and we warmly encourage you to do so!\r\n *

\r\n * Start learning about BDD here: http://en.wikipedia.org/wiki/Behavior_Driven_Development\r\n *

\r\n * The problem is that current stubbing api with canonical role of when word does not integrate nicely with //given //when //then comments.\r\n * It's because stubbing belongs to given component of the test and not to the when component of the test. \r\n * Hence {@link BDDMockito} class introduces an alias so that you stub method calls with {@link BDDMockito#given(Object)} method. \r\n * Now it really nicely integrates with the given component of a BDD style test! \r\n *

\r\n * Here is how the test might look like: \r\n * 

\r\n  * import static org.mockito.BDDMockito.*;\r\n  * \r\n  * Seller seller = mock(Seller.class);\r\n  * Shop shop = new Shop(seller);\r\n  * \r\n  * public void shouldBuyBread() throws Exception {\r\n  *   //given  \r\n  *   given(seller.askForBread()).willReturn(new Bread());\r\n  *   \r\n  *   //when\r\n  *   Goods goods = shop.buyBread();\r\n  *   \r\n  *   //then\r\n  *   assertThat(goods, containBread());\r\n  * }  \r\n  *
\r\n * \r\n *

20. (**New**) Serializable mocks (Since 1.8.1)

\r\n * \r\n * Mocks can be made serializable. With this feature you can use a mock in a place that requires dependencies to be serializable.\r\n *

\r\n * WARNING: This should be rarely used in unit testing. \r\n *

\r\n * The behaviour was implemented for a specific use case of a BDD spec that had an unreliable external dependency. This\r\n * was in a web environment and the objects from the external dependency were being serialized to pass between layers. \r\n *

\r\n * To create serializable mock use {@link MockSettings#serializable()}:\r\n * 

\r\n  *   List serializableMock = mock(List.class, withSettings().serializable());\r\n  *
\r\n *

\r\n * The mock can be serialized assuming all the normal \r\n * serialization requirements are met by the class.\r\n *

\r\n * Making a real object spy serializable is a bit more effort as the spy(...) method does not have an overloaded version \r\n * which accepts MockSettings. No worries, you will hardly ever use it.\r\n * \r\n * 

\r\n  * List list = new ArrayList();\r\n  * List spy = mock(ArrayList.class, withSettings()\r\n  *                 .spiedInstance(list)\r\n  *                 .defaultAnswer(CALLS_REAL_METHODS)\r\n  *                 .serializable());\r\n  * \r\n  */\r\n @SuppressWarnings(\"unchecked\")\r\n public class Mockito extends Matchers {\r\n     \r\n     private static final MockitoCore MOCKITO_CORE = new MockitoCore();\r\n     \r\n     /**\r\n      * The default Answer of every mock if the mock was not stubbed. \r\n      * Typically it just returns some empty value. \r\n      * 
\r\n      * {@link Answer} can be used to define the return values of unstubbed invocations. \r\n      * 
\r\n      * This implementation first tries the global configuration. \r\n      * If there is no global configuration then it uses {@link ReturnsEmptyValues} (returns zeros, empty collections, nulls, etc.)\r\n      */\r\n     public static final Answer RETURNS_DEFAULTS = new GloballyConfiguredAnswer();\r\n     \r\n     /**\r\n      * Optional Answer to be used with {@link Mockito#mock(Class, Answer)}\r\n      * 
\r\n      * {@link Answer} can be used to define the return values of unstubbed invocations.\r\n      * 
\r\n      * This implementation can be helpful when working with legacy code.\r\n      * Unstubbed methods often return null. If your code uses the object returned by an unstubbed call you get a NullPointerException.\r\n      * This implementation of Answer returns SmartNull instead of null.\r\n      * SmartNull gives nicer exception message than NPE because it points out the line where unstubbed method was called. You just click on the stack trace.\r\n      * 
\r\n      * ReturnsSmartNulls first tries to return ordinary return values (see {@link ReturnsMoreEmptyValues})\r\n      * then it tries to return SmartNull. If the return type is final then plain null is returned.\r\n      * 
\r\n      * ReturnsSmartNulls will be probably the default return values strategy in Mockito 2.0\r\n      * 
\r\n      * Example:\r\n      * 
\r\n      *   Foo mock = (Foo.class, RETURNS_SMART_NULLS);\r\n      *   \r\n      *   //calling unstubbed method here:\r\n      *   Stuff stuff = mock.getStuff();\r\n      *   \r\n      *   //using object returned by unstubbed call:\r\n      *   stuff.doSomething();\r\n      *   \r\n      *   //Above doesn't yield NullPointerException this time!\r\n      *   //Instead, SmartNullPointerException is thrown. \r\n      *   //Exception's cause links to unstubbed mock.getStuff() - just click on the stack trace.  \r\n      * 
\r\n      */\r\n     public static final Answer RETURNS_SMART_NULLS = new ReturnsSmartNulls();\r\n     \r\n     /**\r\n      * Optional Answer to be used with {@link Mockito#mock(Class, Answer)}\r\n      * 
\r\n      * {@link Answer} can be used to define the return values of unstubbed invocations.\r\n      * 
\r\n      * This implementation can be helpful when working with legacy code. \r\n      * 
\r\n      * ReturnsMocks first tries to return ordinary return values (see {@link ReturnsMoreEmptyValues})\r\n      * then it tries to return mocks. If the return type cannot be mocked (e.g. is final) then plain null is returned.\r\n      * 
\r\n      */\r\n     public static final Answer RETURNS_MOCKS = new ReturnsMocks();\r\n \r\n     /**\r\n      * Optional Answer to be used with {@link Mockito#mock(Class, Answer)}\r\n      * 
\r\n      * {@link Answer} can be used to define the return values of unstubbed invocations.\r\n      * 
\r\n      * This implementation can be helpful when working with legacy code.\r\n      * When this implementation is used, unstubbed methods will delegate to the real implementation.\r\n      * This is a way to create a partial mock object that calls real methods by default.\r\n      * 
\r\n      * As usual you are going to read the partial mock warning:\r\n      * Object oriented programming is more less tackling complexity by dividing the complexity into separate, specific, SRPy objects.\r\n      * How does partial mock fit into this paradigm? Well, it just doesn't... \r\n      * Partial mock usually means that the complexity has been moved to a different method on the same object.\r\n      * In most cases, this is not the way you want to design your application.\r\n      * 
\r\n      * However, there are rare cases when partial mocks come handy: \r\n      * dealing with code you cannot change easily (3rd party interfaces, interim refactoring of legacy code etc.)\r\n      * However, I wouldn't use partial mocks for new, test-driven & well-designed code.\r\n      * 
\r\n      * Example:\r\n      * 
\r\n      * Foo mock = mock(Foo.class, CALLS_REAL_METHODS);\r\n      *\r\n      * // this calls the real implementation of Foo.getSomething()\r\n      * value = mock.getSomething();\r\n      *\r\n      * when(mock.getSomething()).thenReturn(fakeValue);\r\n      *\r\n      * // now fakeValue is returned\r\n      * value = mock.getSomething();\r\n      * 
\r\n      */\r\n     public static final Answer CALLS_REAL_METHODS = new CallsRealMethods();\r\n     \r\n     /**\r\n      * Creates mock object of given class or interface.\r\n      * 
\r\n      * See examples in javadoc for {@link Mockito} class\r\n      * \r\n      * @param classToMock class or interface to mock\r\n      * @return mock object\r\n      */\r\n     public static  T mock(Class classToMock) {\r\n         return mock(classToMock, withSettings().defaultAnswer(RETURNS_DEFAULTS));\r\n     }\r\n     \r\n     /**\r\n      * Specifies mock name. Naming mocks can be helpful for debugging - the name is used in all verification errors. \r\n      * 
\r\n      * Beware that naming mocks is not a solution for complex code which uses too many mocks or collaborators. \r\n      * If you have too many mocks then refactor the code so that it's easy to test/debug without necessity of naming mocks.\r\n      * 
\r\n      * If you use @Mock annotation then you've got naming mocks for free! @Mock uses field name as mock name. {@link Mock Read more.}\r\n      * 
\r\n      * \r\n      * See examples in javadoc for {@link Mockito} class\r\n      * \r\n      * @param classToMock class or interface to mock\r\n      * @param name of the mock \r\n      * @return mock object\r\n      */\r\n     public static  T mock(Class classToMock, String name) {\r\n         return mock(classToMock, withSettings()\r\n                 .name(name)\r\n                 .defaultAnswer(RETURNS_DEFAULTS));\r\n     }\r\n     \r\n     /**\r\n      * @deprecated\r\n      * Please use mock(Foo.class, defaultAnswer);\r\n      * 
\r\n      * See {@link Mockito#mock(Class, Answer)}\r\n      * 
\r\n      * Why it is deprecated? ReturnValues is being replaced by Answer\r\n      * for better consistency & interoperability of the framework. \r\n      * Answer interface has been in Mockito for a while and it has the same responsibility as ReturnValues.\r\n      * There's no point in mainting exactly the same interfaces.\r\n      * 
\r\n      * Creates mock with a specified strategy for its return values. \r\n      * It's quite advanced feature and typically you don't need it to write decent tests.\r\n      * However it can be helpful when working with legacy systems.\r\n      * 
\r\n      * Obviously return values are used only when you don't stub the method call.\r\n      *\r\n      * 
\r\n      *   Foo mock = mock(Foo.class, Mockito.RETURNS_SMART_NULLS);\r\n      *   Foo mockTwo = mock(Foo.class, new YourOwnReturnValues()); \r\n      * 
\r\n      * \r\n      * 
See examples in javadoc for {@link Mockito} class
\r\n      * \r\n      * @param classToMock class or interface to mock\r\n      * @param returnValues default return values for unstubbed methods\r\n      *\r\n      * @return mock object\r\n      */\r\n     @Deprecated\r\n     public static  T mock(Class classToMock, ReturnValues returnValues) {\r\n         return mock(classToMock, withSettings().defaultAnswer(new AnswerReturnValuesAdapter(returnValues)));\r\n     }\r\n     \r\n     /**\r\n      * Creates mock with a specified strategy for its answers to interactions. \r\n      * It's quite advanced feature and typically you don't need it to write decent tests.\r\n      * However it can be helpful when working with legacy systems.\r\n      * 
\r\n      * It is the default answer so it will be used only when you don't stub the method call.\r\n      *\r\n      * 
\r\n      *   Foo mock = mock(Foo.class, RETURNS_SMART_NULLS);\r\n      *   Foo mockTwo = mock(Foo.class, new YourOwnAnswer()); \r\n      * 
\r\n      * \r\n      * 
See examples in javadoc for {@link Mockito} class
\r\n      * \r\n      * @param classToMock class or interface to mock\r\n      * @param defaultAnswer default answer for unstubbed methods\r\n      *\r\n      * @return mock object\r\n      */\r\n     public static  T mock(Class classToMock, Answer defaultAnswer) {\r\n         return mock(classToMock, withSettings().defaultAnswer(defaultAnswer));\r\n     }\r\n     \r\n     /**\r\n      * Creates a mock with some non-standard settings.\r\n      * 
\r\n      * The number of configuration points for a mock grows \r\n      * so we need a fluent way to introduce new configuration without adding more and more overloaded Mockito.mock() methods. \r\n      * Hence {@link MockSettings}.\r\n      * 
\r\n      *   Listener mock = mock(Listener.class, withSettings()\r\n      *     .name(\"firstListner\").defaultBehavior(RETURNS_SMART_NULLS));\r\n      *   );  \r\n      * 
\r\n      * Use it carefully and occasionally. What might be reason your test needs non-standard mocks? \r\n      * Is the code under test so complicated that it requires non-standard mocks? \r\n      * Wouldn't you prefer to refactor the code under test so it is testable in a simple way?\r\n      * 
\r\n      * See also {@link Mockito#withSettings()}\r\n      * 
\r\n      * See examples in javadoc for {@link Mockito} class\r\n      * \r\n      * @param classToMock class or interface to mock\r\n      * @param mockSettings additional mock settings\r\n      * @return mock object\r\n      */\r\n     public static  T mock(Class classToMock, MockSettings mockSettings) {\r\n-        return MOCKITO_CORE.mock(classToMock, mockSettings);\r\n+        return MOCKITO_CORE.mock(classToMock, mockSettings, true);\r\n     }\r\n     \r\n     /**\r\n      * Creates a spy of the real object. The spy calls real methods unless they are stubbed.\r\n      * 
\r\n      * Real spies should be used carefully and occasionally, for example when dealing with legacy code.\r\n      * 
\r\n      * As usual you are going to read the partial mock warning:\r\n      * Object oriented programming is more less tackling complexity by dividing the complexity into separate, specific, SRPy objects.\r\n      * How does partial mock fit into this paradigm? Well, it just doesn't... \r\n      * Partial mock usually means that the complexity has been moved to a different method on the same object.\r\n      * In most cases, this is not the way you want to design your application.\r\n      * 
\r\n      * However, there are rare cases when partial mocks come handy: \r\n      * dealing with code you cannot change easily (3rd party interfaces, interim refactoring of legacy code etc.)\r\n      * However, I wouldn't use partial mocks for new, test-driven & well-designed code.\r\n      * 
\r\n      * Example:\r\n      * \r\n      * 
\r\n      *   List list = new LinkedList();\r\n      *   List spy = spy(list);\r\n      * \r\n      *   //optionally, you can stub out some methods:\r\n      *   when(spy.size()).thenReturn(100);\r\n      * \r\n      *   //using the spy calls real methods\r\n      *   spy.add(\"one\");\r\n      *   spy.add(\"two\");\r\n      * \r\n      *   //prints \"one\" - the first element of a list\r\n      *   System.out.println(spy.get(0));\r\n      * \r\n      *   //size() method was stubbed - 100 is printed\r\n      *   System.out.println(spy.size());\r\n      * \r\n      *   //optionally, you can verify\r\n      *   verify(spy).add(\"one\");\r\n      *   verify(spy).add(\"two\");\r\n      * 
\r\n      * \r\n      * 
Important gotcha on spying real objects!
\r\n      * \r\n      * 1. Sometimes it's impossible to use {@link Mockito#when(Object)} for stubbing spies. Example:\r\n      * \r\n      * 
\r\n      *   List list = new LinkedList();\r\n      *   List spy = spy(list);\r\n      *   \r\n      *   //Impossible: real method is called so spy.get(0) throws IndexOutOfBoundsException (the list is yet empty)\r\n      *   when(spy.get(0)).thenReturn(\"foo\");\r\n      *   \r\n      *   //You have to use doReturn() for stubbing\r\n      *   doReturn(\"foo\").when(spy).get(0);\r\n      * 
\r\n      * \r\n      * 2. Watch out for final methods. \r\n      * Mockito doesn't mock final methods so the bottom line is: when you spy on real objects + you try to stub a final method = trouble.\r\n      * What will happen is the real method will be called *on mock* but *not on the real instance* you passed to the spy() method.\r\n      * Typically you may get a NullPointerException because mock instances don't have fields initiated.\r\n      * \r\n      * 
\r\n      * See examples in javadoc for {@link Mockito} class\r\n      * \r\n      * @param object\r\n      *            to spy on\r\n      * @return a spy of the real object\r\n      */\r\n     public static  T spy(T object) {\r\n         return MOCKITO_CORE.mock((Class) object.getClass(), withSettings()\r\n                 .spiedInstance(object)\r\n-                .defaultAnswer(CALLS_REAL_METHODS)); \r\n+                .defaultAnswer(CALLS_REAL_METHODS), true); \r\n     }\r\n \r\n     /**\r\n      * 
\r\n      *   //Instead of:\r\n      *   stub(mock.count()).toReturn(10);\r\n      * \r\n      *   //Please do:\r\n      *   when(mock.count()).thenReturn(10);\r\n      * 
 \r\n      * \r\n      * Many users found stub() confusing therefore stub() has been deprecated in favor of {@link Mockito#when(Object)} \r\n      * 
\r\n      * How to fix deprecation warnings? Typically it's just few minutes of search & replace job:\r\n      * 
\r\n      *   Mockito.stub;  replace with:  Mockito.when;\r\n      *   stub(          replace with:  when(\r\n      *   .toReturn(     replace with:  .thenReturn(\r\n      *   .toThrow(      replace with:  .thenThrow(\r\n      *   .toAnswer(     replace with:  .thenAnswer(\r\n      * 
\r\n      * If you're an existing user then sorry for making your code littered with deprecation warnings. \r\n--- a/src/org/mockito/internal/MockitoCore.java\n+++ b/src/org/mockito/internal/MockitoCore.java\n@@ -1,38 +1,39 @@\n /*\r\n  * Copyright (c) 2007 Mockito contributors\r\n  * This program is made available under the terms of the MIT License.\r\n  */\r\n package org.mockito.internal;\r\n \r\n import org.mockito.InOrder;\r\n import org.mockito.MockSettings;\r\n import org.mockito.exceptions.Reporter;\r\n import org.mockito.exceptions.misusing.NotAMockException;\r\n import org.mockito.internal.creation.MockSettingsImpl;\r\n import org.mockito.internal.invocation.Invocation;\r\n import org.mockito.internal.progress.IOngoingStubbing;\r\n import org.mockito.internal.progress.MockingProgress;\r\n import org.mockito.internal.progress.ThreadSafeMockingProgress;\r\n import org.mockito.internal.stubbing.OngoingStubbingImpl;\r\n import org.mockito.internal.stubbing.StubberImpl;\r\n import org.mockito.internal.util.MockUtil;\r\n import org.mockito.internal.verification.api.VerificationMode;\r\n import org.mockito.stubbing.*;\r\n \r\n import java.util.Arrays;\r\n import java.util.List;\r\n \r\n @SuppressWarnings(\"unchecked\")\r\n public class MockitoCore {\r\n \r\n     private final Reporter reporter = new Reporter();\r\n     private final MockUtil mockUtil = new MockUtil();\r\n     private final MockingProgress mockingProgress = new ThreadSafeMockingProgress();\r\n     \r\n-    public  T mock(Class classToMock, MockSettings mockSettings, boolean shouldResetOngoingStubbing) { return mock(classToMock, mockSettings); }\r\n-    public  T mock(Class classToMock, MockSettings mockSettings) {\r\n+    public  T mock(Class classToMock, MockSettings mockSettings, boolean shouldResetOngoingStubbing) {\r\n         mockingProgress.validateState();\r\n+        if (shouldResetOngoingStubbing) {\r\n             mockingProgress.resetOngoingStubbing();\r\n+        }\r\n         return mockUtil.createMock(classToMock, (MockSettingsImpl) mockSettings);\r\n     }\r\n     \r\n",
+    "failingTests": [
+      {
+        "className": " org.mockitousage.bugs.StubbingMocksThatAreConfiguredToReturnMocksTest",
+        "error": "org.mockito.exceptions.misusing.MissingMethodInvocationException",
+        "message": "",
+        "methodName": "shouldAllowStubbingMocksConfiguredWithRETURNS_MOCKS"
+      }
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+    "observations": "Merged two overloaded method definitions.",
+    "program": "mockito",
+    "project": "Mockito",
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+    ],
+    "repairTools": [],
+    "revisionId": "620f8faed0ad132961aae3a8671120e0929ce828"
+  },
+  {
+    "bugId": 15,
+    "changedFiles": {
+      "org/mockito/internal/configuration/injection/FinalMockCandidateFilter.java": {
+        "inserts": [
+          [
+            -1
+          ],
+          [
+            25
+          ],
+          [
+            26
+          ]
+        ]
+      }
+    },
+    "diff": "--- a/src/org/mockito/internal/configuration/injection/FinalMockCandidateFilter.java\n+++ b/src/org/mockito/internal/configuration/injection/FinalMockCandidateFilter.java\n@@ -1,6 +1,7 @@\n package org.mockito.internal.configuration.injection;\r\n \r\n import org.mockito.exceptions.base.MockitoException;\r\n+import org.mockito.internal.util.reflection.BeanPropertySetter;\r\n import org.mockito.internal.util.reflection.FieldSetter;\r\n \r\n import java.lang.reflect.Field;\r\n@@ -22,7 +23,9 @@ public OngoingInjecter filterCandidate(final Collection mocks, final Fie\n             return new OngoingInjecter() {\r\n                 public boolean thenInject() {\r\n                     try {\r\n+                        if (!new BeanPropertySetter(fieldInstance, field).set(matchingMock)) {\r\n                             new FieldSetter(fieldInstance, field).set(matchingMock);\r\n+                        }\r\n                     } catch (Exception e) {\r\n                         throw new MockitoException(\"Problems injecting dependency in \" + field.getName(), e);\r\n                     }\r\n",
+    "failingTests": [
+      {
+        "className": " org.mockitousage.bugs.InjectMocksShouldTryPropertySettersFirstBeforeFieldAccessTest",
+        "error": "junit.framework.AssertionFailedError",
+        "message": "",
+        "methodName": "shouldInjectUsingPropertySetterIfAvailable"
+      }
+    ],
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+    "observations": "Instantiated a BeanPropertySetter object",
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+    "revisionId": "81a380951402d2a158af115ed616ab36e94793b8"
+  },
+  {
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+      "org/mockito/internal/MockHandler.java": {
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+            73
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+        ]
+      }
+    },
+    "diff": "--- a/src/org/mockito/internal/MockHandler.java\n+++ b/src/org/mockito/internal/MockHandler.java\n@@ -17,6 +17,7 @@\n import org.mockito.internal.stubbing.OngoingStubbingImpl;\r\n import org.mockito.internal.stubbing.StubbedInvocationMatcher;\r\n import org.mockito.internal.stubbing.VoidMethodStubbableImpl;\r\n+import org.mockito.internal.verification.MockAwareVerificationMode;\r\n import org.mockito.internal.verification.VerificationDataImpl;\r\n import org.mockito.stubbing.Answer;\r\n import org.mockito.stubbing.VoidMethodStubbable;\r\n@@ -73,9 +74,11 @@ public Object handle(Invocation invocation) throws Throwable {\n         if (verificationMode != null) {\r\n             //We need to check if verification was started on the correct mock \r\n             // - see VerifyingWithAnExtraCallToADifferentMockTest\r\n+            if (verificationMode instanceof MockAwareVerificationMode && ((MockAwareVerificationMode) verificationMode).getMock() == invocation.getMock()) {\r\n                 VerificationDataImpl data = new VerificationDataImpl(invocationContainerImpl.getInvocations(), invocationMatcher);            \r\n                 verificationMode.verify(data);\r\n                 return null;\r\n+            }\r\n         }\r\n         \r\n         invocationContainerImpl.setInvocationForPotentialStubbing(invocationMatcher);\r\n--- a/src/org/mockito/internal/MockitoCore.java\n+++ b/src/org/mockito/internal/MockitoCore.java\n@@ -20,6 +20,7 @@\n import org.mockito.internal.stubbing.OngoingStubbingImpl;\r\n import org.mockito.internal.stubbing.StubberImpl;\r\n import org.mockito.internal.util.MockUtil;\r\n+import org.mockito.internal.verification.MockAwareVerificationMode;\r\n import org.mockito.internal.verification.VerificationDataImpl;\r\n import org.mockito.internal.verification.VerificationModeFactory;\r\n import org.mockito.internal.verification.api.InOrderContext;\r\n@@ -70,7 +71,7 @@ public IOngoingStubbing stub() {\n         } else if (!mockUtil.isMock(mock)) {\r\n             reporter.notAMockPassedToVerify();\r\n         }\r\n-        mockingProgress.verificationStarted(mode);\r\n+        mockingProgress.verificationStarted(new MockAwareVerificationMode(mock, mode));\r\n         return mock;\r\n     }\r\n     \r\n",
+    "failingTests": [
+      {
+        "className": " org.mockitousage.bugs.VerifyingWithAnExtraCallToADifferentMockTest",
+        "error": "junit.framework.AssertionFailedError",
+        "message": "",
+        "methodName": "shouldAllowVerifyingWhenOtherMockCallIsInTheSameLine"
+      }
+    ],
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+    },
+    "observations": "An existing parameter (\"mode\") was wrapped by a constructor call, instantiating MockAwareVerificationMode object",
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+    ],
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+    "revisionId": "9b2cf8072ece7c7629eff6037853b3e14ab5f524"
+  },
+  {
+    "bugId": 12,
+    "changedFiles": {
+      "org/mockito/internal/util/reflection/GenericMaster.java": {
+        "inserts": [
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+            20
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+          [
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+            22
+          ]
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+      }
+    },
+    "diff": "--- a/src/org/mockito/internal/util/reflection/GenericMaster.java\n+++ b/src/org/mockito/internal/util/reflection/GenericMaster.java\n@@ -17,8 +17,12 @@ public Class getGenericType(Field field) {\n         Type generic = field.getGenericType();\r\n         if (generic != null && generic instanceof ParameterizedType) {\r\n             Type actual = ((ParameterizedType) generic).getActualTypeArguments()[0];\r\n+            if (actual instanceof Class) {\r\n                 return (Class) actual;\r\n+            } else if (actual instanceof ParameterizedType) {\r\n                 //in case of nested generics we don't go deep\r\n+                return (Class) ((ParameterizedType) actual).getRawType();\r\n+            }\r\n         }\r\n         \r\n         return Object.class;\r\n",
+    "failingTests": [
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+        "error": "java.lang.ClassCastException",
+        "message": "sun.reflect.generics.reflectiveObjects.ParameterizedTypeImpl cannot be cast to java.lang.Class",
+        "methodName": "shouldDealWithNestedGenerics"
+      },
+      {
+        "className": " org.mockitousage.annotation.CaptorAnnotationBasicTest",
+        "error": "java.lang.ClassCastException",
+        "message": "sun.reflect.generics.reflectiveObjects.ParameterizedTypeImpl cannot be cast to java.lang.Class",
+        "methodName": "shouldUseAnnotatedCaptor"
+      },
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+        "className": " org.mockitousage.annotation.CaptorAnnotationBasicTest",
+        "error": "java.lang.ClassCastException",
+        "message": "sun.reflect.generics.reflectiveObjects.ParameterizedTypeImpl cannot be cast to java.lang.Class",
+        "methodName": "shouldUseCaptorInOrdinaryWay"
+      },
+      {
+        "className": " org.mockitousage.annotation.CaptorAnnotationBasicTest",
+        "error": "java.lang.ClassCastException",
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+        "methodName": "shouldCaptureGenericList"
+      },
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+        "className": " org.mockitousage.annotation.CaptorAnnotationBasicTest",
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+        "methodName": "shouldUseGenericlessAnnotatedCaptor"
+      },
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+      },
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+    "diff": "--- a/src/org/mockito/internal/MockHandler.java\n+++ b/src/org/mockito/internal/MockHandler.java\n@@ -74,12 +74,14 @@ public Object handle(Invocation invocation) throws Throwable {\n         if (verificationMode != null) {\r\n             //We need to check if verification was started on the correct mock \r\n             // - see VerifyingWithAnExtraCallToADifferentMockTest (bug 138)\r\n-            if (verificationMode instanceof MockAwareVerificationMode && ((MockAwareVerificationMode) verificationMode).getMock() == invocation.getMock()) {                \r\n+            if (((MockAwareVerificationMode) verificationMode).getMock() == invocation.getMock()) {                \r\n                 VerificationDataImpl data = new VerificationDataImpl(invocationContainerImpl, invocationMatcher);            \r\n                 verificationMode.verify(data);\r\n                 return null;\r\n+            } else {\r\n                 // this means there is an invocation on a different mock. Re-adding verification mode \r\n                 // - see VerifyingWithAnExtraCallToADifferentMockTest (bug 138)\r\n+                mockingProgress.verificationStarted(verificationMode);\r\n             }\r\n         }\r\n         \r\n",
+    "failingTests": [
+      {
+        "className": " org.mockitousage.bugs.VerifyingWithAnExtraCallToADifferentMockTest",
+        "error": "junit.framework.AssertionFailedError",
+        "message": "",
+        "methodName": "shouldAllowVerifyingWhenOtherMockCallIsInTheSameLine"
+      }
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+  },
+  {
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+    "changedFiles": {
+      "org/mockito/internal/creation/MockSettingsImpl.java": {
+        "changes": [
+          [
+            22
+          ],
+          [
+            74
+          ]
+        ],
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+            -1
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+      }
+    },
+    "diff": "--- a/src/org/mockito/internal/creation/MockSettingsImpl.java\n+++ b/src/org/mockito/internal/creation/MockSettingsImpl.java\n@@ -17,9 +17,11 @@\n     private Object spiedInstance;\r\n     private Answer defaultAnswer;\r\n     private MockName mockName;\r\n+    private boolean serializable;\r\n \r\n     public MockSettings serializable() {\r\n-        return this.extraInterfaces(java.io.Serializable.class);\r\n+        this.serializable = true;\r\n+        return this;\r\n     }\r\n \r\n     public MockSettings extraInterfaces(Class... extraInterfaces) {\r\n@@ -71,7 +73,7 @@ public MockSettings defaultAnswer(Answer defaultAnswer) {\n     }\r\n \r\n     public boolean isSerializable() {\r\n-        return extraInterfaces != null && java.util.Arrays.asList(extraInterfaces).contains(java.io.Serializable.class);\r\n+        return serializable;\r\n     }\r\n \r\n     public void initiateMockName(Class classToMock) {\r\n--- a/src/org/mockito/internal/util/MockUtil.java\n+++ b/src/org/mockito/internal/util/MockUtil.java\n@@ -16,6 +16,7 @@\n import org.mockito.internal.creation.jmock.ClassImposterizer;\r\n import org.mockito.internal.util.reflection.LenientCopyTool;\r\n \r\n+import java.io.Serializable;\r\n \r\n @SuppressWarnings(\"unchecked\")\r\n public class MockUtil {\r\n@@ -42,7 +43,11 @@ public MockUtil() {\n         Class[] interfaces = settings.getExtraInterfaces();\r\n \r\n         Class[] ancillaryTypes;\r\n+        if (settings.isSerializable()) {\r\n+            ancillaryTypes = interfaces == null ? new Class[] {Serializable.class} : new ArrayUtils().concat(interfaces, Serializable.class);\r\n+        } else {\r\n             ancillaryTypes = interfaces == null ? new Class[0] : interfaces;\r\n+        }\r\n \r\n         Object spiedInstance = settings.getSpiedInstance();\r\n         \r\n",
+    "failingTests": [
+      {
+        "className": " org.mockitousage.basicapi.MocksSerializationTest",
+        "error": "java.io.NotSerializableException",
+        "message": "org.mockitousage.IMethods$$EnhancerByMockitoWithCGLIB$$3a0bdfbc",
+        "methodName": "shouldBeSerializeAndHaveExtraInterfaces"
+      }
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+  {
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+    "changedFiles": {
+      "org/mockito/internal/stubbing/defaultanswers/ReturnsEmptyValues.java": {
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+    },
+    "diff": "--- a/src/org/mockito/internal/stubbing/defaultanswers/ReturnsEmptyValues.java\n+++ b/src/org/mockito/internal/stubbing/defaultanswers/ReturnsEmptyValues.java\n@@ -84,6 +84,8 @@ Object returnValueFor(Class type) {\n             return Primitives.defaultValueForPrimitiveOrWrapper(type);\n             //new instances are used instead of Collections.emptyList(), etc.\n             //to avoid UnsupportedOperationException if code under test modifies returned collection\n+        } else if (type == Iterable.class) {\n+            return new ArrayList(0);\n         } else if (type == Collection.class) {\n             return new LinkedList();\n         } else if (type == Set.class) {\n",
+    "failingTests": [
+      {
+        "className": " org.mockito.internal.stubbing.defaultanswers.ReturnsEmptyValuesTest",
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+        "message": "",
+        "methodName": "should_return_empty_iterable"
+      }
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+      "org/mockito/internal/matchers/Equality.java": {
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+    },
+    "diff": "--- a/src/org/mockito/internal/matchers/Equality.java\n+++ b/src/org/mockito/internal/matchers/Equality.java\n@@ -10,7 +10,9 @@\n public class Equality {\r\n \r\n     public static boolean areEqual(Object o1, Object o2) {\r\n-        if (o1 == null || o2 == null) {\r\n+        if (o1 == o2 ) {\r\n+            return true;\r\n+\t} else if (o1 == null || o2 == null) {\r\n             return o1 == null && o2 == null;\r\n         } else if (isArray(o1)) {\r\n             return isArray(o2) && areArraysEqual(o1, o2);\r\n",
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+    "changedFiles": {
+      "org/mockito/internal/creation/bytebuddy/ByteBuddyMockMaker.java": {
+        "changes": [
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+            34
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+    "diff": "--- a/src/org/mockito/internal/creation/bytebuddy/ByteBuddyMockMaker.java\n+++ b/src/org/mockito/internal/creation/bytebuddy/ByteBuddyMockMaker.java\n@@ -29,9 +29,10 @@ public ByteBuddyMockMaker() {\n                 settings.getTypeToMock(),\n                 settings.getExtraInterfaces()\n         );\n+        Instantiator instantiator = new InstantiatorProvider().getInstantiator(settings);\n         T mockInstance = null;\n         try {\n-            mockInstance = classInstantiator.instantiate(mockedProxyType);\n+            mockInstance = instantiator.newInstance(mockedProxyType);\n             MockMethodInterceptor.MockAccess mockAccess = (MockMethodInterceptor.MockAccess) mockInstance;\n             mockAccess.setMockitoInterceptor(new MockMethodInterceptor(asInternalMockHandler(handler), settings));\n \n@@ -42,7 +43,7 @@ public ByteBuddyMockMaker() {\n                     \"  class to mock : \" + describeClass(mockedProxyType),\n                     \"  created class : \" + describeClass(settings.getTypeToMock()),\n                     \"  proxy instance class : \" + describeClass(mockInstance),\n-                    \"  instance creation by : \" + classInstantiator.getClass().getSimpleName(),\n+                    \"  instance creation by : \" + instantiator.getClass().getSimpleName(),\n                     \"\",\n                     \"You might experience classloading issues, please ask the mockito mailing-list.\",\n                     \"\"\n",
+    "failingTests": [
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+        "message": "expected:<[inner] strength> but was:<[null] strength>",
+        "methodName": "should_spy_inner_class"
+      },
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+        "className": " org.mockitousage.annotation.SpyAnnotationTest",
+        "error": "junit.framework.AssertionFailedError",
+        "message": "",
+        "methodName": "should_report_when_constructor_is_explosive"
+      },
+      {
+        "className": " org.mockitousage.constructor.CreatingMocksWithConstructorTest",
+        "error": "junit.framework.ComparisonFailure",
+        "message": "expected: but was:",
+        "methodName": "can_spy_abstract_classes"
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+    "diff": "--- a/src/org/mockito/internal/configuration/injection/PropertyAndSetterInjection.java\n+++ b/src/org/mockito/internal/configuration/injection/PropertyAndSetterInjection.java\n@@ -111,7 +111,7 @@ private boolean injectMockCandidates(Class awaitingInjectionClazz, Set mocks, Object instance, boolean injectionOccurred, List orderedInstanceFields) {\n         for (Iterator it = orderedInstanceFields.iterator(); it.hasNext(); ) {\n             Field field = it.next();\n-            Object injected = mockCandidateFilter.filterCandidate(mocks, field, instance).thenInject();\n+            Object injected = mockCandidateFilter.filterCandidate(mocks, field, orderedInstanceFields, instance).thenInject();\n             if (injected != null) {\n                 injectionOccurred |= true;\n                 mocks.remove(injected);\n--- a/src/org/mockito/internal/configuration/injection/filter/FinalMockCandidateFilter.java\n+++ b/src/org/mockito/internal/configuration/injection/filter/FinalMockCandidateFilter.java\n@@ -10,6 +10,7 @@\n \n import java.lang.reflect.Field;\n import java.util.Collection;\n+import java.util.List;\n \n /**\n  * This node returns an actual injecter which will be either :\n@@ -20,7 +21,7 @@\n  * \n  */\n public class FinalMockCandidateFilter implements MockCandidateFilter {\n-    public OngoingInjecter filterCandidate(final Collection mocks, final Field field, final Object fieldInstance) {\n+    public OngoingInjecter filterCandidate(final Collection mocks, final Field field, List fields, final Object fieldInstance) {\n         if(mocks.size() == 1) {\n             final Object matchingMock = mocks.iterator().next();\n \n--- a/src/org/mockito/internal/configuration/injection/filter/MockCandidateFilter.java\n+++ b/src/org/mockito/internal/configuration/injection/filter/MockCandidateFilter.java\n@@ -6,13 +6,14 @@\n \n import java.lang.reflect.Field;\n import java.util.Collection;\n+import java.util.List;\n \n public interface MockCandidateFilter {\n \n     OngoingInjecter filterCandidate(\n             Collection mocks,\n             Field fieldToBeInjected,\n-            Object fieldInstance\n+            List fields, Object instance\n     );\n \n }\n--- a/src/org/mockito/internal/configuration/injection/filter/NameBasedCandidateFilter.java\n+++ b/src/org/mockito/internal/configuration/injection/filter/NameBasedCandidateFilter.java\n@@ -20,7 +20,7 @@ public NameBasedCandidateFilter(MockCandidateFilter next) {\n \t}\n \n \tpublic OngoingInjecter filterCandidate(Collection mocks,\n-\t\t\tField field, Object fieldInstance) {\n+\t\t\tField field, List fields, Object fieldInstance) {\n \t\tList mockNameMatches = new ArrayList();\n \t\tif (mocks.size() > 1) {\n \t\t\tfor (Object mock : mocks) {\n@@ -28,7 +28,7 @@ public OngoingInjecter filterCandidate(Collection mocks,\n \t\t\t\t\tmockNameMatches.add(mock);\n \t\t\t\t}\n \t\t\t}\n-\t\t\treturn next.filterCandidate(mockNameMatches, field,\n+\t\t\treturn next.filterCandidate(mockNameMatches, field, fields,\n \t\t\t\t\tfieldInstance);\n \t\t\t/*\n \t\t\t * In this case we have to check whether we have conflicting naming\n@@ -39,7 +39,23 @@ public OngoingInjecter filterCandidate(Collection mocks,\n \t\t\t * whenever we find a field that does match its name with the mock\n \t\t\t * name, we should take that field instead.\n \t\t\t */\n+\t\t} else if (mocks.size() == 1) {\n+\t\t\tString mockName = mockUtil.getMockName(mocks.iterator().next())\n+\t\t\t\t\t.toString();\n+\n+\t\t\tfor (Field otherField : fields) {\n+\t\t\t\tif (!otherField.equals(field)\n+\t\t\t\t\t\t&& otherField.getType().equals(field.getType())\n+\t\t\t\t\t\t&& otherField.getName().equals(mockName)) {\n+\n+\t\t\t\t\treturn new OngoingInjecter() {\n+\t\t\t\t\t\tpublic Object thenInject() {\n+\t\t\t\t\t\t\treturn null;\n+\t\t\t\t\t\t}\n+\t\t\t\t\t};\n+\t\t\t\t}\n+\t\t\t}\n \t\t}\n-\t\treturn next.filterCandidate(mocks, field, fieldInstance);\n+\t\treturn next.filterCandidate(mocks, field, fields, fieldInstance);\n \t}\n }\n--- a/src/org/mockito/internal/configuration/injection/filter/TypeBasedCandidateFilter.java\n+++ b/src/org/mockito/internal/configuration/injection/filter/TypeBasedCandidateFilter.java\n@@ -17,7 +17,7 @@ public TypeBasedCandidateFilter(MockCandidateFilter next) {\n         this.next = next;\n     }\n \n-    public OngoingInjecter filterCandidate(Collection mocks, Field field, Object fieldInstance) {\n+    public OngoingInjecter filterCandidate(Collection mocks, Field field, List fields, Object fieldInstance) {\n         List mockTypeMatches = new ArrayList();\n         for (Object mock : mocks) {\n             if (field.getType().isAssignableFrom(mock.getClass())) {\n@@ -25,6 +25,6 @@ public OngoingInjecter filterCandidate(Collection mocks, Field field, Ob\n             }\n         }\n \n-        return next.filterCandidate(mockTypeMatches, field, fieldInstance);\n+        return next.filterCandidate(mockTypeMatches, field, fields, fieldInstance);\n     }\n }\n",
+    "failingTests": [
+      {
+        "className": " org.mockitousage.annotation.MockInjectionUsingSetterOrPropertyTest",
+        "error": "junit.framework.AssertionFailedError",
+        "message": "Expected:  but was: candidate2",
+        "methodName": "shouldInsertFieldWithCorrectNameWhenMultipleTypesAvailable"
+      }
+    ],
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+    "diff": "--- a/src/org/mockito/internal/creation/instance/ConstructorInstantiator.java\n+++ b/src/org/mockito/internal/creation/instance/ConstructorInstantiator.java\n@@ -14,18 +14,23 @@ public ConstructorInstantiator(Object outerClassInstance) {\n         if (outerClassInstance == null) {\n             return noArgConstructor(cls);\n         }\n-        return withOuterClass(cls);\n+        return withParams(cls, outerClassInstance);\n     }\n \n-    private  T withOuterClass(Class cls) {\n+    private static  T withParams(Class cls, Object... params) {\n         try {\n             //this is kind of overengineered because we don't need to support more params\n             //however, I know we will be needing it :)\n-            Constructor c = cls.getDeclaredConstructor(outerClassInstance.getClass());\n-            return c.newInstance(outerClassInstance);\n+            for (Constructor constructor : cls.getDeclaredConstructors()) {\n+                Class[] types = constructor.getParameterTypes();\n+                if (paramsMatch(types, params)) {\n+                    return (T) constructor.newInstance(params);\n+                }\n+            }\n         } catch (Exception e) {\n             throw paramsException(cls, e);\n         }\n+        throw paramsException(cls, null);\n     }\n \n     private static  InstantationException paramsException(Class cls, Exception e) {\n@@ -33,6 +38,17 @@ public ConstructorInstantiator(Object outerClassInstance) {\n                 + cls.getSimpleName() + \"'.\\nPlease ensure that the outer instance has correct type and that the target class has parameter-less constructor.\", e);\n     }\n \n+    private static boolean paramsMatch(Class[] types, Object[] params) {\n+        if (params.length != types.length) {\n+            return false;\n+        }\n+        for (int i = 0; i < params.length; i++) {\n+            if (!types[i].isInstance(params[i])) {\n+                return false;\n+            }\n+        }\n+        return true;\n+    }\n \n     private static  T noArgConstructor(Class cls) {\n         try {\n",
+    "failingTests": [
+      {
+        "className": " org.mockito.internal.creation.instance.ConstructorInstantiatorTest",
+        "error": "org.mockito.internal.creation.instance.InstantationException",
+        "message": "Unable to create mock instance of 'SomeInnerClass'.",
+        "methodName": "creates_instances_of_inner_classes"
+      }
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+    "diff": "--- a/src/org/mockito/internal/stubbing/defaultanswers/ReturnsDeepStubs.java\n+++ b/src/org/mockito/internal/stubbing/defaultanswers/ReturnsDeepStubs.java\n@@ -41,14 +41,16 @@\n     \r\n     private static final long serialVersionUID = -7105341425736035847L;\r\n \r\n-    private MockitoCore mockitoCore = new MockitoCore();\r\n-    private ReturnsEmptyValues delegate = new ReturnsEmptyValues();\r\n+    private transient MockitoCore mockitoCore;\r\n+    private transient ReturnsEmptyValues delegate;\r\n \r\n     public Object answer(InvocationOnMock invocation) throws Throwable {\r\n         GenericMetadataSupport returnTypeGenericMetadata =\r\n                 actualParameterizedType(invocation.getMock()).resolveGenericReturnType(invocation.getMethod());\r\n \r\n         Class rawType = returnTypeGenericMetadata.rawType();\r\n+        instantiateMockitoCoreIfNeeded();\r\n+        instantiateDelegateIfNeeded();\r\n         if (!mockitoCore.isTypeMockable(rawType)) {\r\n             return delegate.returnValueFor(rawType);\r\n         }\r\n@@ -56,7 +58,17 @@ public Object answer(InvocationOnMock invocation) throws Throwable {\n         return getMock(invocation, returnTypeGenericMetadata);\r\n     }\r\n \r\n+    private synchronized void instantiateMockitoCoreIfNeeded() {\r\n+        if (mockitoCore == null) {\r\n+            mockitoCore = new MockitoCore();\r\n+        }\r\n+    }\r\n \r\n+    private synchronized void instantiateDelegateIfNeeded() {\r\n+        if (delegate == null) {\r\n+            delegate = new ReturnsEmptyValues();\r\n+        }\r\n+    }\r\n \r\n     private Object getMock(InvocationOnMock invocation, GenericMetadataSupport returnTypeGenericMetadata) throws Throwable {\r\n     \tInternalMockHandler handler = new MockUtil().getMockHandler(invocation.getMock());\r\n@@ -97,6 +109,7 @@ private MockSettings withSettingsUsing(GenericMetadataSupport returnTypeGenericM\n                 : withSettings();\r\n \r\n         return mockSettings\r\n+\t\t        .serializable()\r\n                 .defaultAnswer(returnsDeepStubsAnswerUsing(returnTypeGenericMetadata));\r\n     }\r\n \r\n@@ -111,7 +124,7 @@ protected GenericMetadataSupport actualParameterizedType(Object mock) {\n \r\n     private Object recordDeepStubMock(final Object mock, InvocationContainerImpl container) throws Throwable {\r\n \r\n-        container.addAnswer(new Answer() {\r\n+        container.addAnswer(new SerializableAnswer() {\r\n             public Object answer(InvocationOnMock invocation) throws Throwable {\r\n                 return mock;\r\n             }\r\n@@ -120,7 +133,9 @@ public Object answer(InvocationOnMock invocation) throws Throwable {\n         return mock;\r\n     }\r\n \t\r\n+\tabstract class SerializableAnswer implements Answer, Serializable {\r\n \t\t\r\n+\t}\r\n \t\r\n \r\n     protected GenericMetadataSupport actualParameterizedType(Object mock) {\r\n",
+    "failingTests": [
+      {
+        "className": " org.mockitousage.stubbing.DeepStubsSerializableTest",
+        "error": "java.io.NotSerializableException",
+        "message": "org.mockito.internal.stubbing.defaultanswers.ReturnsDeepStubs$2",
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+        "error": "junit.framework.AssertionFailedError",
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+    "diff": "--- a/src/org/mockito/internal/stubbing/defaultanswers/ReturnsEmptyValues.java\n+++ b/src/org/mockito/internal/stubbing/defaultanswers/ReturnsEmptyValues.java\n@@ -73,7 +73,7 @@ public Object answer(InvocationOnMock invocation) {\n             //see issue 184.\n             //mocks by default should return 0 if references are the same, otherwise some other value because they are not the same. Hence we return 1 (anything but 0 is good).\n             //Only for compareTo() method by the Comparable interface\n-            return 1;\n+            return invocation.getMock() == invocation.getArguments()[0] ? 0 : 1;\n         }\n         \n         Class returnType = invocation.getMethod().getReturnType();\n",
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+    "diff": "--- a/src/org/mockito/internal/stubbing/defaultanswers/ReturnsDeepStubs.java\n+++ b/src/org/mockito/internal/stubbing/defaultanswers/ReturnsDeepStubs.java\n@@ -1,85 +1,108 @@\n /*\r\n  * Copyright (c) 2007 Mockito contributors\r\n  * This program is made available under the terms of the MIT License.\r\n  */\r\n package org.mockito.internal.stubbing.defaultanswers;\r\n \r\n+import org.mockito.MockSettings;\r\n import org.mockito.internal.InternalMockHandler;\r\n import org.mockito.internal.creation.settings.CreationSettings;\r\n import org.mockito.internal.stubbing.InvocationContainerImpl;\r\n import org.mockito.internal.stubbing.StubbedInvocationMatcher;\r\n import org.mockito.internal.util.MockCreationValidator;\r\n import org.mockito.internal.util.MockUtil;\r\n import org.mockito.internal.util.reflection.GenericMetadataSupport;\r\n import org.mockito.invocation.InvocationOnMock;\r\n import org.mockito.stubbing.Answer;\r\n \r\n import java.io.Serializable;\r\n \r\n+import static org.mockito.Mockito.mock;\r\n+import static org.mockito.Mockito.withSettings;\r\n \r\n /**\r\n  * Returning deep stub implementation.\r\n  *\r\n  * Will return previously created mock if the invocation matches.\r\n  *\r\n  * 
Supports nested generic information, with this answer you can write code like this :\r\n  *\r\n  * 
\r\n  *     interface GenericsNest<K extends Comparable<K> & Cloneable> extends Map<K, Set<Number>> {}\r\n  *\r\n  *     GenericsNest<?> mock = mock(GenericsNest.class, new ReturnsGenericDeepStubs());\r\n  *     Number number = mock.entrySet().iterator().next().getValue().iterator().next();\r\n  * 
\r\n  * 
\r\n  *\r\n  * @see org.mockito.Mockito#RETURNS_DEEP_STUBS\r\n  * @see org.mockito.Answers#RETURNS_DEEP_STUBS\r\n  */\r\n public class ReturnsDeepStubs implements Answer, Serializable {\r\n     \r\n     private static final long serialVersionUID = -7105341425736035847L;\r\n \r\n     private ReturnsEmptyValues delegate = new ReturnsEmptyValues();\r\n \r\n     public Object answer(InvocationOnMock invocation) throws Throwable {\r\n         GenericMetadataSupport returnTypeGenericMetadata =\r\n                 actualParameterizedType(invocation.getMock()).resolveGenericReturnType(invocation.getMethod());\r\n \r\n         Class rawType = returnTypeGenericMetadata.rawType();\r\n         if (!new MockCreationValidator().isTypeMockable(rawType)) {\r\n             return delegate.returnValueFor(rawType);\r\n         }\r\n \r\n-        return getMock(invocation);\r\n+        return getMock(invocation, returnTypeGenericMetadata);\r\n     }\r\n \r\n-    private Object getMock(InvocationOnMock invocation) throws Throwable {\r\n+    private Object getMock(InvocationOnMock invocation, GenericMetadataSupport returnTypeGenericMetadata) throws Throwable {\r\n     \tInternalMockHandler handler = new MockUtil().getMockHandler(invocation.getMock());\r\n     \tInvocationContainerImpl container = (InvocationContainerImpl) handler.getInvocationContainer();\r\n \r\n         // matches invocation for verification\r\n         for (StubbedInvocationMatcher stubbedInvocationMatcher : container.getStubbedInvocations()) {\r\n     \t\tif(container.getInvocationForStubbing().matches(stubbedInvocationMatcher.getInvocation())) {\r\n     \t\t\treturn stubbedInvocationMatcher.answer(invocation);\r\n     \t\t}\r\n \t\t}\r\n \r\n         // deep stub\r\n-        return recordDeepStubMock(invocation, container);\r\n+        return recordDeepStubMock(createNewDeepStubMock(returnTypeGenericMetadata), container);\r\n     }\r\n \r\n     /**\r\n      * Creates a mock using the Generics Metadata.\r\n      *\r\n      * @param returnTypeGenericMetadata The metadata to use to create the new mock.\r\n      * @return The mock\r\n      */\r\n+    private Object createNewDeepStubMock(GenericMetadataSupport returnTypeGenericMetadata) {\r\n+        return mock(\r\n+                returnTypeGenericMetadata.rawType(),\r\n+                withSettingsUsing(returnTypeGenericMetadata)\r\n+        );\r\n+    }\r\n \r\n+    private MockSettings withSettingsUsing(GenericMetadataSupport returnTypeGenericMetadata) {\r\n+        MockSettings mockSettings =\r\n+                returnTypeGenericMetadata.rawExtraInterfaces().length > 0 ?\r\n+                withSettings().extraInterfaces(returnTypeGenericMetadata.rawExtraInterfaces())\r\n+                : withSettings();\r\n \r\n+        return mockSettings\r\n+                .defaultAnswer(returnsDeepStubsAnswerUsing(returnTypeGenericMetadata));\r\n+    }\r\n \r\n+    private ReturnsDeepStubs returnsDeepStubsAnswerUsing(final GenericMetadataSupport returnTypeGenericMetadata) {\r\n+        return new ReturnsDeepStubs() {\r\n+            @Override\r\n+            protected GenericMetadataSupport actualParameterizedType(Object mock) {\r\n+                return returnTypeGenericMetadata;\r\n+            }\r\n+        };\r\n+    }\r\n \r\n-    private Object recordDeepStubMock(InvocationOnMock invocation, InvocationContainerImpl container) {\r\n-        Class clz = invocation.getMethod().getReturnType();\r\n-        final Object mock = org.mockito.Mockito.mock(clz, this);\r\n+    private Object recordDeepStubMock(final Object mock, InvocationContainerImpl container) throws Throwable {\r\n \r\n         container.addAnswer(new Answer() {\r\n",
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+        ]
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+    },
+    "diff": "--- a/src/org/mockito/internal/util/Primitives.java\n+++ b/src/org/mockito/internal/util/Primitives.java\n@@ -63,6 +63,6 @@ public static boolean isPrimitiveWrapper(Class type) {\n         primitiveValues.put(int.class, 0);\r\n         primitiveValues.put(long.class, 0L);\r\n         primitiveValues.put(float.class, 0F);\r\n-        primitiveValues.put(double.class, 0);\r\n+        primitiveValues.put(double.class, 0D);\r\n     }\r\n }\n\\ No newline at end of file\n",
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+          [
+            49
+          ]
+        ],
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+    "diff": "--- a/src/org/mockito/internal/configuration/SpyAnnotationEngine.java\n+++ b/src/org/mockito/internal/configuration/SpyAnnotationEngine.java\n@@ -16,6 +16,7 @@\n import org.mockito.exceptions.base.MockitoException;\r\n import org.mockito.internal.util.MockUtil;\r\n \r\n+import static org.mockito.Mockito.withSettings;\r\n \r\n @SuppressWarnings({\"unchecked\"})\r\n public class SpyAnnotationEngine implements AnnotationEngine {\r\n@@ -46,7 +47,10 @@ public void process(Class context, Object testClass) {\n                         // instance has been spied earlier\r\n                         Mockito.reset(instance);\r\n                     } else {\r\n-                        field.set(testClass, Mockito.spy(instance));\r\n+                        field.set(testClass, Mockito.mock(instance.getClass(), withSettings()\r\n+                                .spiedInstance(instance)\r\n+                                .defaultAnswer(Mockito.CALLS_REAL_METHODS)\r\n+                                .name(field.getName())));\r\n                     }\r\n                 } catch (IllegalAccessException e) {\r\n                     throw new MockitoException(\"Problems initiating spied field \" + field.getName(), e);\r\n",
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+        "message": "<'",
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+      }
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+      }
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+      "org/mockito/internal/invocation/InvocationMatcher.java": {
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+            106
+          ]
+        ]
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+    },
+    "diff": "--- a/src/org/mockito/internal/invocation/InvocationMatcher.java\n+++ b/src/org/mockito/internal/invocation/InvocationMatcher.java\n@@ -103,7 +103,7 @@ public String toString(PrintSettings printSettings) {\n     public void captureArgumentsFrom(Invocation i) {\n         int k = 0;\n         for (Matcher m : matchers) {\n-            if (m instanceof CapturesArguments) {\n+            if (m instanceof CapturesArguments && i.getArguments().length > k) {\n                 ((CapturesArguments) m).captureFrom(i.getArguments()[k]);\n             }\n             k++;\n",
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+      },
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+    "diff": "--- a/src/org/mockito/Matchers.java\n+++ b/src/org/mockito/Matchers.java\n@@ -359,7 +359,7 @@ public static Collection anyCollection() {\n      * @return null.\r\n      */\r\n     public static  T isA(Class clazz) {\r\n-        return reportMatcher(new InstanceOf(clazz)).returnNull();\r\n+        return reportMatcher(new InstanceOf(clazz)).returnFor(clazz);\r\n     }\r\n \r\n     /**\r\n@@ -476,7 +476,7 @@ public static short eq(short value) {\n      * @return null.\r\n      */\r\n     public static  T eq(T value) {\r\n-        return reportMatcher(new Equals(value)).returnNull();\r\n+        return (T) reportMatcher(new Equals(value)).returnFor((Class) value.getClass());\r\n     }  \r\n \r\n     /**\r\n@@ -513,7 +513,7 @@ public static short eq(short value) {\n      * @return null.\r\n      */\r\n     public static  T same(T value) {\r\n-        return reportMatcher(new Same(value)).returnNull();\r\n+        return (T) reportMatcher(new Same(value)).returnFor((Class) value.getClass());\r\n     }\r\n \r\n     /**\r\n",
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+    "diff": "--- a/src/org/mockito/exceptions/Reporter.java\n+++ b/src/org/mockito/exceptions/Reporter.java\n@@ -435,10 +435,11 @@ public void misplacedArgumentMatcher(Location location) {\n                 ));\n     }\n \n-    public void smartNullPointerException(Location location) {\n+    public void smartNullPointerException(Object obj, Location location) {\n         throw new SmartNullPointerException(join(\n                 \"You have a NullPointerException here:\",\n                 new Location(),\n+                obj,\n                 \"Because this method was *not* stubbed correctly:\",\n                 location,\n                 \"\"\n--- a/src/org/mockito/internal/stubbing/defaultanswers/ReturnsSmartNulls.java\n+++ b/src/org/mockito/internal/stubbing/defaultanswers/ReturnsSmartNulls.java\n@@ -53,7 +53,7 @@ public Object intercept(Object obj, Method method, Object[] args, MethodProxy pr\n                 return \"SmartNull returned by unstubbed \" + formatMethodCall()  + \" method on mock\";\r\n             }\r\n \r\n-            new Reporter().smartNullPointerException(location);\r\n+            new Reporter().smartNullPointerException(obj, location);\r\n             return null;\r\n         }\r\n \r\n",
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+    "diff": "--- a/src/main/java/org/joda/time/MutableDateTime.java\n+++ b/src/main/java/org/joda/time/MutableDateTime.java\n@@ -636,7 +636,9 @@ public void add(DurationFieldType type, int amount) {\n         if (type == null) {\n             throw new IllegalArgumentException(\"Field must not be null\");\n         }\n+        if (amount != 0) {\n             setMillis(type.getField(getChronology()).add(getMillis(), amount));\n+        }\n     }\n \n     //-----------------------------------------------------------------------\n@@ -657,7 +659,9 @@ public void setYear(final int year) {\n      * @throws IllegalArgumentException if the value is invalid\n      */\n     public void addYears(final int years) {\n+        if (years != 0) {\n             setMillis(getChronology().years().add(getMillis(), years));\n+        }\n     }\n \n     //-----------------------------------------------------------------------\n@@ -678,7 +682,9 @@ public void setWeekyear(final int weekyear) {\n      * @throws IllegalArgumentException if the value is invalid\n      */\n     public void addWeekyears(final int weekyears) {\n+        if (weekyears != 0) {\n             setMillis(getChronology().weekyears().add(getMillis(), weekyears));\n+        }\n     }\n \n     //-----------------------------------------------------------------------\n@@ -699,7 +705,9 @@ public void setMonthOfYear(final int monthOfYear) {\n      * @throws IllegalArgumentException if the value is invalid\n      */\n     public void addMonths(final int months) {\n+        if (months != 0) {\n             setMillis(getChronology().months().add(getMillis(), months));\n+        }\n     }\n \n     //-----------------------------------------------------------------------\n@@ -720,7 +728,9 @@ public void setWeekOfWeekyear(final int weekOfWeekyear) {\n      * @throws IllegalArgumentException if the value is invalid\n      */\n     public void addWeeks(final int weeks) {\n+        if (weeks != 0) {\n             setMillis(getChronology().weeks().add(getMillis(), weeks));\n+        }\n     }\n \n     //-----------------------------------------------------------------------\n@@ -761,7 +771,9 @@ public void setDayOfWeek(final int dayOfWeek) {\n      * @throws IllegalArgumentException if the value is invalid\n      */\n     public void addDays(final int days) {\n+        if (days != 0) {\n             setMillis(getChronology().days().add(getMillis(), days));\n+        }\n     }\n \n     //-----------------------------------------------------------------------\n@@ -782,7 +794,9 @@ public void setHourOfDay(final int hourOfDay) {\n      * @throws IllegalArgumentException if the value is invalid\n      */\n     public void addHours(final int hours) {\n+        if (hours != 0) {\n             setMillis(getChronology().hours().add(getMillis(), hours));\n+        }\n     }\n     \n     //-----------------------------------------------------------------------\n@@ -813,7 +827,9 @@ public void setMinuteOfHour(final int minuteOfHour) {\n      * @throws IllegalArgumentException if the value is invalid\n      */\n     public void addMinutes(final int minutes) {\n+        if (minutes != 0) {\n             setMillis(getChronology().minutes().add(getMillis(), minutes));\n+        }\n     }\n \n     //-----------------------------------------------------------------------\n@@ -844,7 +860,9 @@ public void setSecondOfMinute(final int secondOfMinute) {\n      * @throws IllegalArgumentException if the value is invalid\n      */\n     public void addSeconds(final int seconds) {\n+        if (seconds != 0) {\n             setMillis(getChronology().seconds().add(getMillis(), seconds));\n+        }\n     }\n \n     //-----------------------------------------------------------------------\n@@ -877,7 +895,9 @@ public void setMillisOfSecond(final int millisOfSecond) {\n      * @throws IllegalArgumentException if the value is invalid\n      */\n     public void addMillis(final int millis) {\n+        if (millis != 0) {\n             setMillis(getChronology().millis().add(getMillis(), millis));\n+        }\n     }\n \n     //-----------------------------------------------------------------------\n",
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+    "diff": "--- a/src/main/java/org/joda/time/Partial.java\n+++ b/src/main/java/org/joda/time/Partial.java\n@@ -214,11 +214,20 @@ public Partial(DateTimeFieldType[] types, int[] values, Chronology chronology) {\n             DateTimeFieldType loopType = types[i];\n             DurationField loopUnitField = loopType.getDurationType().getField(iChronology);\n             if (i > 0) {\n+                if (loopUnitField.isSupported() == false) {\n+                    if (lastUnitField.isSupported()) {\n+                        throw new IllegalArgumentException(\"Types array must be in order largest-smallest: \" +\n+                                        types[i - 1].getName() + \" < \" + loopType.getName());\n+                    } else {\n+                        throw new IllegalArgumentException(\"Types array must not contain duplicate unsupported: \" +\n+                                        types[i - 1].getName() + \" and \" + loopType.getName());\n+                    }\n+                }\n                 int compare = lastUnitField.compareTo(loopUnitField);\n                 if (compare < 0) {\n                     throw new IllegalArgumentException(\"Types array must be in order largest-smallest: \" +\n                             types[i - 1].getName() + \" < \" + loopType.getName());\n-                } else if (compare == 0) {\n+                } else if (compare == 0 && lastUnitField.equals(loopUnitField)) {\n                     if (types[i - 1].getRangeDurationType() == null) {\n                         if (loopType.getRangeDurationType() == null) {\n                             throw new IllegalArgumentException(\"Types array must not contain duplicate: \" +\n--- a/src/main/java/org/joda/time/field/UnsupportedDurationField.java\n+++ b/src/main/java/org/joda/time/field/UnsupportedDurationField.java\n@@ -224,9 +224,6 @@ public long getUnitMillis() {\n      * @return zero always\n      */\n     public int compareTo(DurationField durationField) {\n-        if (durationField.isSupported()) {\n-            return 1;\n-        }\n         return 0;\n     }\n \n",
+    "failingTests": [
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+        "className": " org.joda.time.TestPartial_Constructors",
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+        "message": "",
+        "methodName": "testConstructorEx7_TypeArray_intArray"
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+        ]
+      }
+    },
+    "diff": "--- a/src/main/java/org/joda/time/Partial.java\n+++ b/src/main/java/org/joda/time/Partial.java\n@@ -461,7 +461,7 @@ public Partial with(DateTimeFieldType fieldType, int value) {\n             System.arraycopy(iValues, i, newValues, i + 1, newValues.length - i - 1);\n             // use public constructor to ensure full validation\n             // this isn't overly efficient, but is safe\n-            Partial newPartial = new Partial(iChronology, newTypes, newValues);\n+            Partial newPartial = new Partial(newTypes, newValues, iChronology);\n             iChronology.validate(newPartial, newValues);\n             return newPartial;\n         }\n",
+    "failingTests": [
+      {
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+      "org/mockito/internal/stubbing/answers/AnswersValidator.java": {
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+    "diff": "--- a/src/main/java/org/joda/time/Partial.java\n+++ b/src/main/java/org/joda/time/Partial.java\n@@ -215,7 +215,7 @@ public Partial(DateTimeFieldType[] types, int[] values, Chronology chronology) {\n             DurationField loopUnitField = loopType.getDurationType().getField(iChronology);\n             if (i > 0) {\n                 int compare = lastUnitField.compareTo(loopUnitField);\n-                if (compare < 0 || (compare != 0 && loopUnitField.isSupported() == false)) {\n+                if (compare < 0) {\n                     throw new IllegalArgumentException(\"Types array must be in order largest-smallest: \" +\n                             types[i - 1].getName() + \" < \" + loopType.getName());\n                 } else if (compare == 0) {\n@@ -446,6 +446,9 @@ public Partial with(DateTimeFieldType fieldType, int value) {\n                         if (compare > 0) {\n                             break;\n                         } else if (compare == 0) {\n+                            if (fieldType.getRangeDurationType() == null) {\n+                                break;\n+                            }\n                             DurationField rangeField = fieldType.getRangeDurationType().getField(iChronology);\n                             DurationField loopRangeField = loopType.getRangeDurationType().getField(iChronology);\n                             if (rangeField.compareTo(loopRangeField) > 0) {\n--- a/src/main/java/org/joda/time/field/UnsupportedDurationField.java\n+++ b/src/main/java/org/joda/time/field/UnsupportedDurationField.java\n@@ -224,6 +224,9 @@ public long getUnitMillis() {\n      * @return zero always\n      */\n     public int compareTo(DurationField durationField) {\n+        if (durationField.isSupported()) {\n+            return 1;\n+        }\n         return 0;\n     }\n \n",
+    "failingTests": [
+      {
+        "className": " org.joda.time.TestPartial_Basics",
+        "error": "java.lang.IllegalArgumentException",
+        "message": "Types array must not contain duplicate: era and year",
+        "methodName": "testWith_baseAndArgHaveNoRange"
+      }
+    ],
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+      "org/joda/time/DateTimeZone.java": {
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+    "diff": "--- a/src/main/java/org/joda/time/DateTimeZone.java\n+++ b/src/main/java/org/joda/time/DateTimeZone.java\n@@ -276,14 +276,17 @@ public static DateTimeZone forOffsetHoursMinutes(int hoursOffset, int minutesOff\n         if (hoursOffset < -23 || hoursOffset > 23) {\n             throw new IllegalArgumentException(\"Hours out of range: \" + hoursOffset);\n         }\n-        if (minutesOffset < 0 || minutesOffset > 59) {\n+        if (minutesOffset < -59 || minutesOffset > 59) {\n             throw new IllegalArgumentException(\"Minutes out of range: \" + minutesOffset);\n         }\n+        if (hoursOffset > 0 && minutesOffset < 0) {\n+            throw new IllegalArgumentException(\"Positive hours must not have negative minutes: \" + minutesOffset);\n+        }\n         int offset = 0;\n         try {\n             int hoursInMinutes = hoursOffset * 60;\n             if (hoursInMinutes < 0) {\n-                minutesOffset = hoursInMinutes - minutesOffset;\n+                minutesOffset = hoursInMinutes - Math.abs(minutesOffset);\n             } else {\n                 minutesOffset = hoursInMinutes + minutesOffset;\n             }\n",
+    "failingTests": [
+      {
+        "className": " org.joda.time.TestDateTimeZone",
+        "error": "java.lang.IllegalArgumentException",
+        "message": "Minutes out of range: -15",
+        "methodName": "testForOffsetHoursMinutes_int_int"
+      }
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+  {
+    "bugId": 6,
+    "changedFiles": {
+      "org/joda/time/chrono/GJChronology.java": {
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+          [
+            196
+          ],
+          [
+            979
+          ],
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+            1001
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+    },
+    "diff": "--- a/src/main/java/org/joda/time/chrono/GJChronology.java\n+++ b/src/main/java/org/joda/time/chrono/GJChronology.java\n@@ -193,6 +193,10 @@ public static synchronized GJChronology getInstance(\n             cutoverInstant = DEFAULT_CUTOVER;\n         } else {\n             cutoverInstant = gregorianCutover.toInstant();\n+            LocalDate cutoverDate = new LocalDate(cutoverInstant.getMillis(), GregorianChronology.getInstance(zone));\n+            if (cutoverDate.getYear() <= 0) {\n+                throw new IllegalArgumentException(\"Cutover too early. Must be on or after 0001-01-01.\");\n+            }\n         }\n \n         GJChronology chrono;\n@@ -976,6 +980,17 @@ public long add(long instant, int value) {\n                 if (instant < iCutover) {\n                     // Only adjust if gap fully crossed.\n                     if (instant + iGapDuration < iCutover) {\n+                        if (iConvertByWeekyear) {\n+                            int wyear = iGregorianChronology.weekyear().get(instant);\n+                            if (wyear <= 0) {\n+                                instant = iGregorianChronology.weekyear().add(instant, -1);\n+                            }\n+                        } else {\n+                            int year = iGregorianChronology.year().get(instant);\n+                            if (year <= 0) {\n+                                instant = iGregorianChronology.year().add(instant, -1);\n+                            }\n+                        }\n                         instant = gregorianToJulian(instant);\n                     }\n                 }\n@@ -998,6 +1013,17 @@ public long add(long instant, long value) {\n                 if (instant < iCutover) {\n                     // Only adjust if gap fully crossed.\n                     if (instant + iGapDuration < iCutover) {\n+                        if (iConvertByWeekyear) {\n+                            int wyear = iGregorianChronology.weekyear().get(instant);\n+                            if (wyear <= 0) {\n+                                instant = iGregorianChronology.weekyear().add(instant, -1);\n+                            }\n+                        } else {\n+                            int year = iGregorianChronology.year().get(instant);\n+                            if (year <= 0) {\n+                                instant = iGregorianChronology.year().add(instant, -1);\n+                            }\n+                        }\n                         instant = gregorianToJulian(instant);\n                     }\n                 }\n",
+    "failingTests": [
+      {
+        "className": " org.joda.time.chrono.TestGJDate",
+        "error": "junit.framework.AssertionFailedError",
+        "message": "",
+        "methodName": "test_cutoverPreZero"
+      },
+      {
+        "className": " org.joda.time.chrono.TestGJDate",
+        "error": "junit.framework.AssertionFailedError",
+        "message": "expected:<-0002-06-30> but was:<-0001-06-28>",
+        "methodName": "test_plusWeekyears_positiveToNegative_crossCutover"
+      },
+      {
+        "className": " org.joda.time.chrono.TestGJDate",
+        "error": "org.joda.time.IllegalFieldValueException",
+        "message": "Value 0 for year is not supported",
+        "methodName": "test_plusYears_positiveToZero_crossCutover"
+      },
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+        "className": " org.joda.time.chrono.TestGJDate",
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+        "methodName": "test_plusYears_positiveToNegative_crossCutover"
+      },
+      {
+        "className": " org.joda.time.chrono.TestGJDate",
+        "error": "org.joda.time.IllegalFieldValueException",
+        "message": "Value 0 for year is not supported",
+        "methodName": "test_plusWeekyears_positiveToZero_crossCutover"
+      }
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+    "diff": "--- a/src/main/java/org/joda/time/format/DateTimeFormatter.java\n+++ b/src/main/java/org/joda/time/format/DateTimeFormatter.java\n@@ -705,9 +705,9 @@ public int parseInto(ReadWritableInstant instant, String text, int position) {\n         \n         long instantMillis = instant.getMillis();\n         Chronology chrono = instant.getChronology();\n+        int defaultYear = DateTimeUtils.getChronology(chrono).year().get(instantMillis);\n         long instantLocal = instantMillis + chrono.getZone().getOffset(instantMillis);\n         chrono = selectChronology(chrono);\n-        int defaultYear = chrono.year().get(instantLocal);\n         \n         DateTimeParserBucket bucket = new DateTimeParserBucket(\n             instantLocal, chrono, iLocale, iPivotYear, defaultYear);\n",
+    "failingTests": [
+      {
+        "className": " org.joda.time.format.TestDateTimeFormatter",
+        "error": "org.joda.time.IllegalFieldValueException",
+        "message": "Cannot parse \"2 29\": Value 29 for dayOfMonth must be in the range [1,28]",
+        "methodName": "testParseInto_monthDay_feb29_newYork_startOfYear"
+      },
+      {
+        "className": " org.joda.time.format.TestDateTimeFormatter",
+        "error": "org.joda.time.IllegalFieldValueException",
+        "message": "Cannot parse \"2 29\": Value 29 for dayOfMonth must be in the range [1,28]",
+        "methodName": "testParseInto_monthDay_feb29_tokyo_endOfYear"
+      }
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+    "observations": "Move assignment of var and changed assignment expression.",
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+    "bugId": 9,
+    "changedFiles": {
+      "org/joda/time/DateTimeZone.java": {
+        "changes": [
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+            263
+          ],
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+            267
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+    "diff": "--- a/src/main/java/org/joda/time/DateTimeZone.java\n+++ b/src/main/java/org/joda/time/DateTimeZone.java\n@@ -255,16 +255,19 @@ public static DateTimeZone forOffsetHoursMinutes(int hoursOffset, int minutesOff\n         if (hoursOffset == 0 && minutesOffset == 0) {\n             return DateTimeZone.UTC;\n         }\n+        if (hoursOffset < -23 || hoursOffset > 23) {\n+            throw new IllegalArgumentException(\"Hours out of range: \" + hoursOffset);\n+        }\n         if (minutesOffset < 0 || minutesOffset > 59) {\n             throw new IllegalArgumentException(\"Minutes out of range: \" + minutesOffset);\n         }\n         int offset = 0;\n         try {\n-            int hoursInMinutes = FieldUtils.safeMultiply(hoursOffset, 60);\n+            int hoursInMinutes = hoursOffset * 60;\n             if (hoursInMinutes < 0) {\n-                minutesOffset = FieldUtils.safeAdd(hoursInMinutes, -minutesOffset);\n+                minutesOffset = hoursInMinutes - minutesOffset;\n             } else {\n-                minutesOffset = FieldUtils.safeAdd(hoursInMinutes, minutesOffset);\n+                minutesOffset = hoursInMinutes + minutesOffset;\n             }\n             offset = FieldUtils.safeMultiply(minutesOffset, DateTimeConstants.MILLIS_PER_MINUTE);\n         } catch (ArithmeticException ex) {\n@@ -280,6 +283,9 @@ public static DateTimeZone forOffsetHoursMinutes(int hoursOffset, int minutesOff\n      * @return the DateTimeZone object for the offset\n      */\n     public static DateTimeZone forOffsetMillis(int millisOffset) {\n+        if (millisOffset < -MAX_MILLIS || millisOffset > MAX_MILLIS) {\n+            throw new IllegalArgumentException(\"Millis out of range: \" + millisOffset);\n+        }\n         String id = printOffset(millisOffset);\n         return fixedOffsetZone(id, millisOffset);\n     }\n",
+    "failingTests": [
+      {
+        "className": " org.joda.time.TestDateTimeZone",
+        "error": "junit.framework.AssertionFailedError",
+        "message": "",
+        "methodName": "testForOffsetHoursMinutes_int_int"
+      }
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+  },
+  {
+    "bugId": 10,
+    "changedFiles": {
+      "org/joda/time/base/BaseSingleFieldPeriod.java": {
+        "changes": [
+          [
+            104
+          ]
+        ],
+        "inserts": [
+          [
+            -1
+          ]
+        ]
+      }
+    },
+    "diff": "--- a/src/main/java/org/joda/time/base/BaseSingleFieldPeriod.java\n+++ b/src/main/java/org/joda/time/base/BaseSingleFieldPeriod.java\n@@ -49,6 +49,7 @@\n     /** Serialization version. */\n     private static final long serialVersionUID = 9386874258972L;\n     /** The start of 1972. */\n+    private static final long START_1972 = 2L * 365L * 86400L * 1000L;\n \n     /** The period in the units of this period. */\n     private volatile int iPeriod;\n@@ -101,7 +102,7 @@ protected static int between(ReadablePartial start, ReadablePartial end, Readabl\n             throw new IllegalArgumentException(\"ReadablePartial objects must be contiguous\");\n         }\n         Chronology chrono = DateTimeUtils.getChronology(start.getChronology()).withUTC();\n-        int[] values = chrono.get(zeroInstance, chrono.set(start, 0L), chrono.set(end, 0L));\n+        int[] values = chrono.get(zeroInstance, chrono.set(start, START_1972), chrono.set(end, START_1972));\n         return values[0];\n     }\n \n",
+    "failingTests": [
+      {
+        "className": " org.joda.time.TestDays",
+        "error": "org.joda.time.IllegalFieldValueException",
+        "message": "Value 29 for dayOfMonth must be in the range [1,28]",
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+      },
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+        "className": " org.joda.time.TestMonths",
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+      }
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+    "changedFiles": {
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+            212
+          ]
+        ],
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+    "diff": "--- a/src/main/java/org/joda/time/LocalDate.java\n+++ b/src/main/java/org/joda/time/LocalDate.java\n@@ -207,9 +207,10 @@ public static LocalDate fromCalendarFields(Calendar calendar) {\n         if (calendar == null) {\n             throw new IllegalArgumentException(\"The calendar must not be null\");\n         }\n+        int era = calendar.get(Calendar.ERA);\n         int yearOfEra = calendar.get(Calendar.YEAR);\n         return new LocalDate(\n-            yearOfEra,\n+            (era == GregorianCalendar.AD ? yearOfEra : 1 - yearOfEra),\n             calendar.get(Calendar.MONTH) + 1,\n             calendar.get(Calendar.DAY_OF_MONTH)\n         );\n@@ -240,7 +241,12 @@ public static LocalDate fromDateFields(Date date) {\n         if (date == null) {\n             throw new IllegalArgumentException(\"The date must not be null\");\n         }\n+        if (date.getTime() < 0) {\n             // handle years in era BC\n+            GregorianCalendar cal = new GregorianCalendar();\n+            cal.setTime(date);\n+            return fromCalendarFields(cal);\n+        }\n         return new LocalDate(\n             date.getYear() + 1900,\n             date.getMonth() + 1,\n--- a/src/main/java/org/joda/time/LocalDateTime.java\n+++ b/src/main/java/org/joda/time/LocalDateTime.java\n@@ -196,9 +196,10 @@ public static LocalDateTime fromCalendarFields(Calendar calendar) {\n         if (calendar == null) {\n             throw new IllegalArgumentException(\"The calendar must not be null\");\n         }\n+        int era = calendar.get(Calendar.ERA);\n         int yearOfEra = calendar.get(Calendar.YEAR);\n         return new LocalDateTime(\n-            yearOfEra,\n+            (era == GregorianCalendar.AD ? yearOfEra : 1 - yearOfEra),\n             calendar.get(Calendar.MONTH) + 1,\n             calendar.get(Calendar.DAY_OF_MONTH),\n             calendar.get(Calendar.HOUR_OF_DAY),\n@@ -233,7 +234,12 @@ public static LocalDateTime fromDateFields(Date date) {\n         if (date == null) {\n             throw new IllegalArgumentException(\"The date must not be null\");\n         }\n+        if (date.getTime() < 0) {\n             // handle years in era BC\n+            GregorianCalendar cal = new GregorianCalendar();\n+            cal.setTime(date);\n+            return fromCalendarFields(cal);\n+        }\n         return new LocalDateTime(\n             date.getYear() + 1900,\n             date.getMonth() + 1,\n",
+    "failingTests": [
+      {
+        "className": " org.joda.time.TestLocalDateTime_Constructors",
+        "error": "junit.framework.AssertionFailedError",
+        "message": "expected:<0000-02-03T04:05:06.007> but was:<0001-02-03T04:05:06.007>",
+        "methodName": "testFactory_fromDateFields_beforeYearZero1"
+      },
+      {
+        "className": " org.joda.time.TestLocalDateTime_Constructors",
+        "error": "junit.framework.AssertionFailedError",
+        "message": "expected:<-0002-02-03T04:05:06.007> but was:<0003-02-03T04:05:06.007>",
+        "methodName": "testFactory_fromDateFields_beforeYearZero3"
+      },
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+        "className": " org.joda.time.TestLocalDateTime_Constructors",
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+        "message": "expected:<0000-02-03T04:05:06.007> but was:<0001-02-03T04:05:06.007>",
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+      },
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+        "className": " org.joda.time.TestLocalDateTime_Constructors",
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+      "org/joda/time/tz/ZoneInfoCompiler.java": {
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+    "failingTests": [
+      {
+        "className": " org.joda.time.tz.TestCompiler",
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+        "message": "",
+        "methodName": "testDateTimeZoneBuilder"
+      }
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+  {
+    "bugId": 14,
+    "changedFiles": {
+      "org/joda/time/chrono/BasicMonthOfYearDateTimeField.java": {
+        "inserts": [
+          [
+            209,
+            210
+          ]
+        ]
+      }
+    },
+    "diff": "--- a/src/main/java/org/joda/time/chrono/BasicMonthOfYearDateTimeField.java\n+++ b/src/main/java/org/joda/time/chrono/BasicMonthOfYearDateTimeField.java\n@@ -206,7 +206,12 @@ public long add(long instant, long months) {\n         if (valueToAdd == 0) {\n             return values;\n         }\n+        if (partial.size() > 0 && partial.getFieldType(0).equals(DateTimeFieldType.monthOfYear()) && fieldIndex == 0) {\n             // month is largest field and being added to, such as month-day\n+            int curMonth0 = partial.getValue(0) - 1;\n+            int newMonth = ((curMonth0 + (valueToAdd % 12) + 12) % 12) + 1;\n+            return set(partial, 0, values, newMonth);\n+        }\n         if (DateTimeUtils.isContiguous(partial)) {\n             long instant = 0L;\n             for (int i = 0, isize = partial.size(); i < isize; i++) {\n",
+    "failingTests": [
+      {
+        "className": " org.joda.time.TestMonthDay_Basics",
+        "error": "org.joda.time.IllegalFieldValueException",
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+        "methodName": "testPlusMonths_int_negativeFromLeap"
+      },
+      {
+        "className": " org.joda.time.TestMonthDay_Basics",
+        "error": "org.joda.time.IllegalFieldValueException",
+        "message": "Value 29 for dayOfMonth must be in the range [1,28]",
+        "methodName": "testMinusDays_int_negativeFromLeap"
+      },
+      {
+        "className": " org.joda.time.TestMonthDay_Basics",
+        "error": "org.joda.time.IllegalFieldValueException",
+        "message": "Value 29 for dayOfMonth must be in the range [1,28]",
+        "methodName": "testPlusMonths_int_fromLeap"
+      },
+      {
+        "className": " org.joda.time.TestMonthDay_Basics",
+        "error": "junit.framework.AssertionFailedError",
+        "message": "expected:<--02-29> but was:<--02-28>",
+        "methodName": "testPlusMonths_int_negativeEndOfMonthAdjust"
+      },
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+        "className": " org.joda.time.TestMonthDay_Basics",
+        "error": "junit.framework.AssertionFailedError",
+        "message": "expected:<--02-29> but was:<--02-28>",
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+    "bugId": 13,
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+      "org/joda/time/format/PeriodFormatterBuilder.java": {
+        "changes": [
+          [
+            1098
+          ]
+        ],
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+    },
+    "diff": "--- a/src/main/java/org/joda/time/format/PeriodFormatterBuilder.java\n+++ b/src/main/java/org/joda/time/format/PeriodFormatterBuilder.java\n@@ -1095,7 +1095,7 @@ public int calculatePrintedLength(ReadablePeriod period, Locale locale) {\n             if (iFieldType >= SECONDS_MILLIS) {\n                 // valueLong contains the seconds and millis fields\n                 // the minimum output is 0.000, which is 4 or 5 digits with a negative\n-                sum = Math.max(sum, 4);\n+                sum = (valueLong < 0 ? Math.max(sum, 5) : Math.max(sum, 4));\n                 // plus one for the decimal point\n                 sum++;\n                 if (iFieldType == SECONDS_OPTIONAL_MILLIS &&\n@@ -1130,6 +1130,7 @@ public void printTo(StringBuffer buf, ReadablePeriod period, Locale locale) {\n             if (iPrefix != null) {\n                 iPrefix.printTo(buf, value);\n             }\n+            int bufLen = buf.length();\n             int minDigits = iMinPrintedDigits;\n             if (minDigits <= 1) {\n                 FormatUtils.appendUnpaddedInteger(buf, value);\n@@ -1139,6 +1140,9 @@ public void printTo(StringBuffer buf, ReadablePeriod period, Locale locale) {\n             if (iFieldType >= SECONDS_MILLIS) {\n                 int dp = (int) (Math.abs(valueLong) % DateTimeConstants.MILLIS_PER_SECOND);\n                 if (iFieldType == SECONDS_MILLIS || dp > 0) {\n+                    if (valueLong < 0 && valueLong > -DateTimeConstants.MILLIS_PER_SECOND) {\n+                        buf.insert(bufLen, '-');\n+                    }\n                     buf.append('.');\n                     FormatUtils.appendPaddedInteger(buf, dp, 3);\n                 }\n",
+    "failingTests": [
+      {
+        "className": " org.joda.time.format.TestISOPeriodFormat",
+        "error": "junit.framework.ComparisonFailure",
+        "message": "expected: but was:",
+        "methodName": "testFormatStandard_negative"
+      }
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+      "org/joda/time/DateTimeZone.java": {
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+    "diff": "--- a/src/main/java/org/joda/time/DateTimeZone.java\n+++ b/src/main/java/org/joda/time/DateTimeZone.java\n@@ -1164,19 +1164,32 @@ public long adjustOffset(long instant, boolean earlierOrLater) {\n         // a bit messy, but will work in all non-pathological cases\n         \n         // evaluate 3 hours before and after to work out if anything is happening\n-        long instantBefore = convertUTCToLocal(instant - 3 * DateTimeConstants.MILLIS_PER_HOUR);\n-        long instantAfter = convertUTCToLocal(instant + 3 * DateTimeConstants.MILLIS_PER_HOUR);\n-        if (instantBefore == instantAfter) {\n+        long instantBefore = instant - 3 * DateTimeConstants.MILLIS_PER_HOUR;\n+        long instantAfter = instant + 3 * DateTimeConstants.MILLIS_PER_HOUR;\n+        long offsetBefore = getOffset(instantBefore);\n+        long offsetAfter = getOffset(instantAfter);\n+        if (offsetBefore <= offsetAfter) {\n             return instant;  // not an overlap (less than is a gap, equal is normal case)\n         }\n         \n         // work out range of instants that have duplicate local times\n-        long local = convertUTCToLocal(instant);\n-        return convertLocalToUTC(local, false, earlierOrLater ? instantAfter : instantBefore);\n+        long diff = offsetBefore - offsetAfter;\n+        long transition = nextTransition(instantBefore);\n+        long overlapStart = transition - diff;\n+        long overlapEnd = transition + diff;\n+        if (instant < overlapStart || instant >= overlapEnd) {\n+          return instant;  // not an overlap\n+        }\n         \n         // calculate result\n+        long afterStart = instant - overlapStart;\n+        if (afterStart >= diff) {\n           // currently in later offset\n+          return earlierOrLater ? instant : instant - diff;\n+        } else {\n           // currently in earlier offset\n+          return earlierOrLater ? instant + diff : instant;\n+        }\n     }\n //    System.out.println(new DateTime(transitionStart, DateTimeZone.UTC) + \" \" + new DateTime(transitionStart, this));\n \n",
+    "failingTests": [
+      {
+        "className": " org.joda.time.TestDateTimeZoneCutover",
+        "error": "junit.framework.AssertionFailedError",
+        "message": "expected:<2012-02-25T23:15:00.000-03:00> but was:<2012-02-25T23:15:00.000-02:00>",
+        "methodName": "testBug3476684_adjustOffset"
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+    "failingTests": [
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+        "methodName": "testParseInto_monthOnly_baseStartYear"
+      },
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+      },
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+        "message": "Invalid format: \"2007-03-04 12:30 America/Dawson_Creek\" is malformed at \"_Creek\"",
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+    "failingTests": [
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+    "diff": "--- a/src/main/java/org/joda/time/tz/DefaultNameProvider.java\n+++ b/src/main/java/org/joda/time/tz/DefaultNameProvider.java\n@@ -63,22 +63,32 @@ public String getName(Locale locale, String id, String nameKey) {\n         if (byNameKeyCache == null) {\n             byIdCache.put(id, byNameKeyCache = createCache());\n             \n+            String[][] zoneStringsEn = DateTimeUtils.getDateFormatSymbols(Locale.ENGLISH).getZoneStrings();\n+            String[] setEn = null;\n+            for (String[] strings : zoneStringsEn) {\n+              if (strings != null && strings.length == 5 && id.equals(strings[0])) {\n+                setEn = strings;\n+                break;\n+              }\n+            }\n             String[][] zoneStringsLoc = DateTimeUtils.getDateFormatSymbols(locale).getZoneStrings();\n             String[] setLoc = null;\n             for (String[] strings : zoneStringsLoc) {\n               if (strings != null && strings.length == 5 && id.equals(strings[0])) {\n                 setLoc = strings;\n+                break;\n+              }\n+            }\n             \n-              byNameKeyCache.put(setLoc[2], new String[] {setLoc[2], setLoc[1]});\n+            if (setEn != null && setLoc != null) {\n+              byNameKeyCache.put(setEn[2], new String[] {setLoc[2], setLoc[1]});\n               // need to handle case where summer and winter have the same\n               // abbreviation, such as EST in Australia [1716305]\n               // we handle this by appending \"-Summer\", cf ZoneInfoCompiler\n-              if (setLoc[2].equals(setLoc[4])) {\n-                  byNameKeyCache.put(setLoc[4] + \"-Summer\", new String[] {setLoc[4], setLoc[3]});\n+              if (setEn[2].equals(setEn[4])) {\n+                  byNameKeyCache.put(setEn[4] + \"-Summer\", new String[] {setLoc[4], setLoc[3]});\n               } else {\n-                  byNameKeyCache.put(setLoc[4], new String[] {setLoc[4], setLoc[3]});\n-              }\n-                break;\n+                  byNameKeyCache.put(setEn[4], new String[] {setLoc[4], setLoc[3]});\n               }\n             }\n         }\n",
+    "failingTests": [
+      {
+        "className": " org.joda.time.TestDateTimeZone",
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+        "methodName": "testGetName_berlin"
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+    "diff": "--- a/src/main/java/org/joda/time/DateTimeZone.java\n+++ b/src/main/java/org/joda/time/DateTimeZone.java\n@@ -561,6 +561,11 @@ private static synchronized String getConvertedId(String id) {\n             // Backwards compatibility with TimeZone.\n             map = new HashMap();\n             map.put(\"GMT\", \"UTC\");\n+            map.put(\"WET\", \"WET\");\n+            map.put(\"CET\", \"CET\");\n+            map.put(\"MET\", \"CET\");\n+            map.put(\"ECT\", \"CET\");\n+            map.put(\"EET\", \"EET\");\n             map.put(\"MIT\", \"Pacific/Apia\");\n             map.put(\"HST\", \"Pacific/Honolulu\");  // JDK 1.1 compatible\n             map.put(\"AST\", \"America/Anchorage\");\n@@ -569,23 +574,19 @@ private static synchronized String getConvertedId(String id) {\n             map.put(\"PNT\", \"America/Phoenix\");\n             map.put(\"CST\", \"America/Chicago\");\n             map.put(\"EST\", \"America/New_York\");  // JDK 1.1 compatible\n-            map.put(\"IET\", \"America/Indianapolis\");\n+            map.put(\"IET\", \"America/Indiana/Indianapolis\");\n             map.put(\"PRT\", \"America/Puerto_Rico\");\n             map.put(\"CNT\", \"America/St_Johns\");\n-            map.put(\"AGT\", \"America/Buenos_Aires\");\n+            map.put(\"AGT\", \"America/Argentina/Buenos_Aires\");\n             map.put(\"BET\", \"America/Sao_Paulo\");\n-            map.put(\"WET\", \"Europe/London\");\n-            map.put(\"ECT\", \"Europe/Paris\");\n             map.put(\"ART\", \"Africa/Cairo\");\n             map.put(\"CAT\", \"Africa/Harare\");\n-            map.put(\"EET\", \"Europe/Bucharest\");\n             map.put(\"EAT\", \"Africa/Addis_Ababa\");\n-            map.put(\"MET\", \"Asia/Tehran\");\n             map.put(\"NET\", \"Asia/Yerevan\");\n             map.put(\"PLT\", \"Asia/Karachi\");\n-            map.put(\"IST\", \"Asia/Calcutta\");\n+            map.put(\"IST\", \"Asia/Kolkata\");\n             map.put(\"BST\", \"Asia/Dhaka\");\n-            map.put(\"VST\", \"Asia/Saigon\");\n+            map.put(\"VST\", \"Asia/Ho_Chi_Minh\");\n             map.put(\"CTT\", \"Asia/Shanghai\");\n             map.put(\"JST\", \"Asia/Tokyo\");\n             map.put(\"ACT\", \"Australia/Darwin\");\n",
+    "failingTests": [
+      {
+        "className": " org.joda.time.TestDateTimeZone",
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+        "message": "expected:<[WET]> but was:<[Europe/London]>",
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+      }
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\ No newline at end of file
diff --git a/python/data/redis/redis.conf b/python/data/redis/redis.conf
new file mode 100644
index 0000000..f765a7e
--- /dev/null
+++ b/python/data/redis/redis.conf
@@ -0,0 +1,1308 @@
+#db Redis configuration file example.
+#
+# Note that in order to read the configuration file, Redis must be
+# started with the file path as first argument:
+#
+# ./redis-server /path/to/redis.conf
+
+# Note on units: when memory size is needed, it is possible to specify
+# it in the usual form of 1k 5GB 4M and so forth:
+#
+# 1k => 1000 bytes
+# 1kb => 1024 bytes
+# 1m => 1000000 bytes
+# 1mb => 1024*1024 bytes
+# 1g => 1000000000 bytes
+# 1gb => 1024*1024*1024 bytes
+#
+# units are case insensitive so 1GB 1Gb 1gB are all the same.
+
+################################## INCLUDES ###################################
+
+# Include one or more other config files here.  This is useful if you
+# have a standard template that goes to all Redis servers but also need
+# to customize a few per-server settings.  Include files can include
+# other files, so use this wisely.
+#
+# Notice option "include" won't be rewritten by command "CONFIG REWRITE"
+# from admin or Redis Sentinel. Since Redis always uses the last processed
+# line as value of a configuration directive, you'd better put includes
+# at the beginning of this file to avoid overwriting config change at runtime.
+#
+# If instead you are interested in using includes to override configuration
+# options, it is better to use include as the last line.
+#
+# include /path/to/local.conf
+# include /path/to/other.conf
+
+################################## MODULES #####################################
+
+# Load modules at startup. If the server is not able to load modules
+# it will abort. It is possible to use multiple loadmodule directives.
+#
+# loadmodule /path/to/my_module.so
+# loadmodule /path/to/other_module.so
+
+################################## NETWORK #####################################
+
+# By default, if no "bind" configuration directive is specified, Redis listens
+# for connections from all the network interfaces available on the server.
+# It is possible to listen to just one or multiple selected interfaces using
+# the "bind" configuration directive, followed by one or more IP addresses.
+#
+# Examples:
+#
+# bind 192.168.1.100 10.0.0.1
+# bind 127.0.0.1 ::1
+#
+# ~~~ WARNING ~~~ If the computer running Redis is directly exposed to the
+# internet, binding to all the interfaces is dangerous and will expose the
+# instance to everybody on the internet. So by default we uncomment the
+# following bind directive, that will force Redis to listen only into
+# the IPv4 lookback interface address (this means Redis will be able to
+# accept connections only from clients running into the same computer it
+# is running).
+#
+# IF YOU ARE SURE YOU WANT YOUR INSTANCE TO LISTEN TO ALL THE INTERFACES
+# JUST COMMENT THE FOLLOWING LINE.
+# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+bind 127.0.0.1
+
+# Protected mode is a layer of security protection, in order to avoid that
+# Redis instances left open on the internet are accessed and exploited.
+#
+# When protected mode is on and if:
+#
+# 1) The server is not binding explicitly to a set of addresses using the
+#    "bind" directive.
+# 2) No password is configured.
+#
+# The server only accepts connections from clients connecting from the
+# IPv4 and IPv6 loopback addresses 127.0.0.1 and ::1, and from Unix domain
+# sockets.
+#
+# By default protected mode is enabled. You should disable it only if
+# you are sure you want clients from other hosts to connect to Redis
+# even if no authentication is configured, nor a specific set of interfaces
+# are explicitly listed using the "bind" directive.
+protected-mode yes
+
+# Accept connections on the specified port, default is 6379 (IANA #815344).
+# If port 0 is specified Redis will not listen on a TCP socket.
+port 6379
+
+# TCP listen() backlog.
+#
+# In high requests-per-second environments you need an high backlog in order
+# to avoid slow clients connections issues. Note that the Linux kernel
+# will silently truncate it to the value of /proc/sys/net/core/somaxconn so
+# make sure to raise both the value of somaxconn and tcp_max_syn_backlog
+# in order to get the desired effect.
+tcp-backlog 511
+
+# Unix socket.
+#
+# Specify the path for the Unix socket that will be used to listen for
+# incoming connections. There is no default, so Redis will not listen
+# on a unix socket when not specified.
+#
+# unixsocket /tmp/redis.sock
+# unixsocketperm 700
+
+# Close the connection after a client is idle for N seconds (0 to disable)
+timeout 0
+
+# TCP keepalive.
+#
+# If non-zero, use SO_KEEPALIVE to send TCP ACKs to clients in absence
+# of communication. This is useful for two reasons:
+#
+# 1) Detect dead peers.
+# 2) Take the connection alive from the point of view of network
+#    equipment in the middle.
+#
+# On Linux, the specified value (in seconds) is the period used to send ACKs.
+# Note that to close the connection the double of the time is needed.
+# On other kernels the period depends on the kernel configuration.
+#
+# A reasonable value for this option is 300 seconds, which is the new
+# Redis default starting with Redis 3.2.1.
+tcp-keepalive 300
+
+################################# GENERAL #####################################
+
+# By default Redis does not run as a daemon. Use 'yes' if you need it.
+# Note that Redis will write a pid file in /usr/local/var/run/redis.pid when daemonized.
+daemonize no
+
+# If you run Redis from upstart or systemd, Redis can interact with your
+# supervision tree. Options:
+#   supervised no      - no supervision interaction
+#   supervised upstart - signal upstart by putting Redis into SIGSTOP mode
+#   supervised systemd - signal systemd by writing READY=1 to $NOTIFY_SOCKET
+#   supervised auto    - detect upstart or systemd method based on
+#                        UPSTART_JOB or NOTIFY_SOCKET environment variables
+# Note: these supervision methods only signal "process is ready."
+#       They do not enable continuous liveness pings back to your supervisor.
+supervised no
+
+# If a pid file is specified, Redis writes it where specified at startup
+# and removes it at exit.
+#
+# When the server runs non daemonized, no pid file is created if none is
+# specified in the configuration. When the server is daemonized, the pid file
+# is used even if not specified, defaulting to "/usr/local/var/run/redis.pid".
+#
+# Creating a pid file is best effort: if Redis is not able to create it
+# nothing bad happens, the server will start and run normally.
+pidfile /var/run/redis_6379.pid
+
+# Specify the server verbosity level.
+# This can be one of:
+# debug (a lot of information, useful for development/testing)
+# verbose (many rarely useful info, but not a mess like the debug level)
+# notice (moderately verbose, what you want in production probably)
+# warning (only very important / critical messages are logged)
+loglevel notice
+
+# Specify the log file name. Also the empty string can be used to force
+# Redis to log on the standard output. Note that if you use standard
+# output for logging but daemonize, logs will be sent to /dev/null
+logfile ""
+
+# To enable logging to the system logger, just set 'syslog-enabled' to yes,
+# and optionally update the other syslog parameters to suit your needs.
+# syslog-enabled no
+
+# Specify the syslog identity.
+# syslog-ident redis
+
+# Specify the syslog facility. Must be USER or between LOCAL0-LOCAL7.
+# syslog-facility local0
+
+# Set the number of databases. The default database is DB 0, you can select
+# a different one on a per-connection basis using SELECT  where
+# dbid is a number between 0 and 'databases'-1
+databases 16
+
+# By default Redis shows an ASCII art logo only when started to log to the
+# standard output and if the standard output is a TTY. Basically this means
+# that normally a logo is displayed only in interactive sessions.
+#
+# However it is possible to force the pre-4.0 behavior and always show a
+# ASCII art logo in startup logs by setting the following option to yes.
+always-show-logo yes
+
+################################ SNAPSHOTTING  ################################
+#
+# Save the DB on disk:
+#
+#   save  
+#
+#   Will save the DB if both the given number of seconds and the given
+#   number of write operations against the DB occurred.
+#
+#   In the example below the behaviour will be to save:
+#   after 900 sec (15 min) if at least 1 key changed
+#   after 300 sec (5 min) if at least 10 keys changed
+#   after 60 sec if at least 10000 keys changed
+#
+#   Note: you can disable saving completely by commenting out all "save" lines.
+#
+#   It is also possible to remove all the previously configured save
+#   points by adding a save directive with a single empty string argument
+#   like in the following example:
+#
+#   save ""
+
+#save 900 1
+#save 300 10
+save 900 10000
+
+# By default Redis will stop accepting writes if RDB snapshots are enabled
+# (at least one save point) and the latest background save failed.
+# This will make the user aware (in a hard way) that data is not persisting
+# on disk properly, otherwise chances are that no one will notice and some
+# disaster will happen.
+#
+# If the background saving process will start working again Redis will
+# automatically allow writes again.
+#
+# However if you have setup your proper monitoring of the Redis server
+# and persistence, you may want to disable this feature so that Redis will
+# continue to work as usual even if there are problems with disk,
+# permissions, and so forth.
+stop-writes-on-bgsave-error yes
+
+# Compress string objects using LZF when dump .rdb databases?
+# For default that's set to 'yes' as it's almost always a win.
+# If you want to save some CPU in the saving child set it to 'no' but
+# the dataset will likely be bigger if you have compressible values or keys.
+rdbcompression yes
+
+# Since version 5 of RDB a CRC64 checksum is placed at the end of the file.
+# This makes the format more resistant to corruption but there is a performance
+# hit to pay (around 10%) when saving and loading RDB files, so you can disable it
+# for maximum performances.
+#
+# RDB files created with checksum disabled have a checksum of zero that will
+# tell the loading code to skip the check.
+rdbchecksum yes
+
+# The filename where to dump the DB
+dbfilename dump.rdb
+
+# The working directory.
+#
+# The DB will be written inside this directory, with the filename specified
+# above using the 'dbfilename' configuration directive.
+#
+# The Append Only File will also be created inside this directory.
+#
+# Note that you must specify a directory here, not a file name.
+# dir 
+
+################################# REPLICATION #################################
+
+# Master-Slave replication. Use slaveof to make a Redis instance a copy of
+# another Redis server. A few things to understand ASAP about Redis replication.
+#
+# 1) Redis replication is asynchronous, but you can configure a master to
+#    stop accepting writes if it appears to be not connected with at least
+#    a given number of slaves.
+# 2) Redis slaves are able to perform a partial resynchronization with the
+#    master if the replication link is lost for a relatively small amount of
+#    time. You may want to configure the replication backlog size (see the next
+#    sections of this file) with a sensible value depending on your needs.
+# 3) Replication is automatic and does not need user intervention. After a
+#    network partition slaves automatically try to reconnect to masters
+#    and resynchronize with them.
+#
+# slaveof  
+
+# If the master is password protected (using the "requirepass" configuration
+# directive below) it is possible to tell the slave to authenticate before
+# starting the replication synchronization process, otherwise the master will
+# refuse the slave request.
+#
+# masterauth 
+
+# When a slave loses its connection with the master, or when the replication
+# is still in progress, the slave can act in two different ways:
+#
+# 1) if slave-serve-stale-data is set to 'yes' (the default) the slave will
+#    still reply to client requests, possibly with out of date data, or the
+#    data set may just be empty if this is the first synchronization.
+#
+# 2) if slave-serve-stale-data is set to 'no' the slave will reply with
+#    an error "SYNC with master in progress" to all the kind of commands
+#    but to INFO and SLAVEOF.
+#
+slave-serve-stale-data yes
+
+# You can configure a slave instance to accept writes or not. Writing against
+# a slave instance may be useful to store some ephemeral data (because data
+# written on a slave will be easily deleted after resync with the master) but
+# may also cause problems if clients are writing to it because of a
+# misconfiguration.
+#
+# Since Redis 2.6 by default slaves are read-only.
+#
+# Note: read only slaves are not designed to be exposed to untrusted clients
+# on the internet. It's just a protection layer against misuse of the instance.
+# Still a read only slave exports by default all the administrative commands
+# such as CONFIG, DEBUG, and so forth. To a limited extent you can improve
+# security of read only slaves using 'rename-command' to shadow all the
+# administrative / dangerous commands.
+slave-read-only yes
+
+# Replication SYNC strategy: disk or socket.
+#
+# -------------------------------------------------------
+# WARNING: DISKLESS REPLICATION IS EXPERIMENTAL CURRENTLY
+# -------------------------------------------------------
+#
+# New slaves and reconnecting slaves that are not able to continue the replication
+# process just receiving differences, need to do what is called a "full
+# synchronization". An RDB file is transmitted from the master to the slaves.
+# The transmission can happen in two different ways:
+#
+# 1) Disk-backed: The Redis master creates a new process that writes the RDB
+#                 file on disk. Later the file is transferred by the parent
+#                 process to the slaves incrementally.
+# 2) Diskless: The Redis master creates a new process that directly writes the
+#              RDB file to slave sockets, without touching the disk at all.
+#
+# With disk-backed replication, while the RDB file is generated, more slaves
+# can be queued and served with the RDB file as soon as the current child producing
+# the RDB file finishes its work. With diskless replication instead once
+# the transfer starts, new slaves arriving will be queued and a new transfer
+# will start when the current one terminates.
+#
+# When diskless replication is used, the master waits a configurable amount of
+# time (in seconds) before starting the transfer in the hope that multiple slaves
+# will arrive and the transfer can be parallelized.
+#
+# With slow disks and fast (large bandwidth) networks, diskless replication
+# works better.
+repl-diskless-sync no
+
+# When diskless replication is enabled, it is possible to configure the delay
+# the server waits in order to spawn the child that transfers the RDB via socket
+# to the slaves.
+#
+# This is important since once the transfer starts, it is not possible to serve
+# new slaves arriving, that will be queued for the next RDB transfer, so the server
+# waits a delay in order to let more slaves arrive.
+#
+# The delay is specified in seconds, and by default is 5 seconds. To disable
+# it entirely just set it to 0 seconds and the transfer will start ASAP.
+repl-diskless-sync-delay 5
+
+# Slaves send PINGs to server in a predefined interval. It's possible to change
+# this interval with the repl_ping_slave_period option. The default value is 10
+# seconds.
+#
+# repl-ping-slave-period 10
+
+# The following option sets the replication timeout for:
+#
+# 1) Bulk transfer I/O during SYNC, from the point of view of slave.
+# 2) Master timeout from the point of view of slaves (data, pings).
+# 3) Slave timeout from the point of view of masters (REPLCONF ACK pings).
+#
+# It is important to make sure that this value is greater than the value
+# specified for repl-ping-slave-period otherwise a timeout will be detected
+# every time there is low traffic between the master and the slave.
+#
+# repl-timeout 60
+
+# Disable TCP_NODELAY on the slave socket after SYNC?
+#
+# If you select "yes" Redis will use a smaller number of TCP packets and
+# less bandwidth to send data to slaves. But this can add a delay for
+# the data to appear on the slave side, up to 40 milliseconds with
+# Linux kernels using a default configuration.
+#
+# If you select "no" the delay for data to appear on the slave side will
+# be reduced but more bandwidth will be used for replication.
+#
+# By default we optimize for low latency, but in very high traffic conditions
+# or when the master and slaves are many hops away, turning this to "yes" may
+# be a good idea.
+repl-disable-tcp-nodelay no
+
+# Set the replication backlog size. The backlog is a buffer that accumulates
+# slave data when slaves are disconnected for some time, so that when a slave
+# wants to reconnect again, often a full resync is not needed, but a partial
+# resync is enough, just passing the portion of data the slave missed while
+# disconnected.
+#
+# The bigger the replication backlog, the longer the time the slave can be
+# disconnected and later be able to perform a partial resynchronization.
+#
+# The backlog is only allocated once there is at least a slave connected.
+#
+# repl-backlog-size 1mb
+
+# After a master has no longer connected slaves for some time, the backlog
+# will be freed. The following option configures the amount of seconds that
+# need to elapse, starting from the time the last slave disconnected, for
+# the backlog buffer to be freed.
+#
+# Note that slaves never free the backlog for timeout, since they may be
+# promoted to masters later, and should be able to correctly "partially
+# resynchronize" with the slaves: hence they should always accumulate backlog.
+#
+# A value of 0 means to never release the backlog.
+#
+# repl-backlog-ttl 3600
+
+# The slave priority is an integer number published by Redis in the INFO output.
+# It is used by Redis Sentinel in order to select a slave to promote into a
+# master if the master is no longer working correctly.
+#
+# A slave with a low priority number is considered better for promotion, so
+# for instance if there are three slaves with priority 10, 100, 25 Sentinel will
+# pick the one with priority 10, that is the lowest.
+#
+# However a special priority of 0 marks the slave as not able to perform the
+# role of master, so a slave with priority of 0 will never be selected by
+# Redis Sentinel for promotion.
+#
+# By default the priority is 100.
+slave-priority 100
+
+# It is possible for a master to stop accepting writes if there are less than
+# N slaves connected, having a lag less or equal than M seconds.
+#
+# The N slaves need to be in "online" state.
+#
+# The lag in seconds, that must be <= the specified value, is calculated from
+# the last ping received from the slave, that is usually sent every second.
+#
+# This option does not GUARANTEE that N replicas will accept the write, but
+# will limit the window of exposure for lost writes in case not enough slaves
+# are available, to the specified number of seconds.
+#
+# For example to require at least 3 slaves with a lag <= 10 seconds use:
+#
+# min-slaves-to-write 3
+# min-slaves-max-lag 10
+#
+# Setting one or the other to 0 disables the feature.
+#
+# By default min-slaves-to-write is set to 0 (feature disabled) and
+# min-slaves-max-lag is set to 10.
+
+# A Redis master is able to list the address and port of the attached
+# slaves in different ways. For example the "INFO replication" section
+# offers this information, which is used, among other tools, by
+# Redis Sentinel in order to discover slave instances.
+# Another place where this info is available is in the output of the
+# "ROLE" command of a master.
+#
+# The listed IP and address normally reported by a slave is obtained
+# in the following way:
+#
+#   IP: The address is auto detected by checking the peer address
+#   of the socket used by the slave to connect with the master.
+#
+#   Port: The port is communicated by the slave during the replication
+#   handshake, and is normally the port that the slave is using to
+#   list for connections.
+#
+# However when port forwarding or Network Address Translation (NAT) is
+# used, the slave may be actually reachable via different IP and port
+# pairs. The following two options can be used by a slave in order to
+# report to its master a specific set of IP and port, so that both INFO
+# and ROLE will report those values.
+#
+# There is no need to use both the options if you need to override just
+# the port or the IP address.
+#
+# slave-announce-ip 5.5.5.5
+# slave-announce-port 1234
+
+################################## SECURITY ###################################
+
+# Require clients to issue AUTH  before processing any other
+# commands.  This might be useful in environments in which you do not trust
+# others with access to the host running redis-server.
+#
+# This should stay commented out for backward compatibility and because most
+# people do not need auth (e.g. they run their own servers).
+#
+# Warning: since Redis is pretty fast an outside user can try up to
+# 150k passwords per second against a good box. This means that you should
+# use a very strong password otherwise it will be very easy to break.
+#
+# requirepass foobared
+
+# Command renaming.
+#
+# It is possible to change the name of dangerous commands in a shared
+# environment. For instance the CONFIG command may be renamed into something
+# hard to guess so that it will still be available for internal-use tools
+# but not available for general clients.
+#
+# Example:
+#
+# rename-command CONFIG b840fc02d524045429941cc15f59e41cb7be6c52
+#
+# It is also possible to completely kill a command by renaming it into
+# an empty string:
+#
+# rename-command CONFIG ""
+#
+# Please note that changing the name of commands that are logged into the
+# AOF file or transmitted to slaves may cause problems.
+
+################################### CLIENTS ####################################
+
+# Set the max number of connected clients at the same time. By default
+# this limit is set to 10000 clients, however if the Redis server is not
+# able to configure the process file limit to allow for the specified limit
+# the max number of allowed clients is set to the current file limit
+# minus 32 (as Redis reserves a few file descriptors for internal uses).
+#
+# Once the limit is reached Redis will close all the new connections sending
+# an error 'max number of clients reached'.
+#
+# maxclients 10000
+
+############################## MEMORY MANAGEMENT ################################
+
+# Set a memory usage limit to the specified amount of bytes.
+# When the memory limit is reached Redis will try to remove keys
+# according to the eviction policy selected (see maxmemory-policy).
+#
+# If Redis can't remove keys according to the policy, or if the policy is
+# set to 'noeviction', Redis will start to reply with errors to commands
+# that would use more memory, like SET, LPUSH, and so on, and will continue
+# to reply to read-only commands like GET.
+#
+# This option is usually useful when using Redis as an LRU or LFU cache, or to
+# set a hard memory limit for an instance (using the 'noeviction' policy).
+#
+# WARNING: If you have slaves attached to an instance with maxmemory on,
+# the size of the output buffers needed to feed the slaves are subtracted
+# from the used memory count, so that network problems / resyncs will
+# not trigger a loop where keys are evicted, and in turn the output
+# buffer of slaves is full with DELs of keys evicted triggering the deletion
+# of more keys, and so forth until the database is completely emptied.
+#
+# In short... if you have slaves attached it is suggested that you set a lower
+# limit for maxmemory so that there is some free RAM on the system for slave
+# output buffers (but this is not needed if the policy is 'noeviction').
+#
+#maxmemory 16gb
+
+# MAXMEMORY POLICY: how Redis will select what to remove when maxmemory
+# is reached. You can select among five behaviors:
+#
+# volatile-lru -> Evict using approximated LRU among the keys with an expire set.
+# allkeys-lru -> Evict any key using approximated LRU.
+# volatile-lfu -> Evict using approximated LFU among the keys with an expire set.
+# allkeys-lfu -> Evict any key using approximated LFU.
+# volatile-random -> Remove a random key among the ones with an expire set.
+# allkeys-random -> Remove a random key, any key.
+# volatile-ttl -> Remove the key with the nearest expire time (minor TTL)
+# noeviction -> Don't evict anything, just return an error on write operations.
+#
+# LRU means Least Recently Used
+# LFU means Least Frequently Used
+#
+# Both LRU, LFU and volatile-ttl are implemented using approximated
+# randomized algorithms.
+#
+# Note: with any of the above policies, Redis will return an error on write
+#       operations, when there are no suitable keys for eviction.
+#
+#       At the date of writing these commands are: set setnx setex append
+#       incr decr rpush lpush rpushx lpushx linsert lset rpoplpush sadd
+#       sinter sinterstore sunion sunionstore sdiff sdiffstore zadd zincrby
+#       zunionstore zinterstore hset hsetnx hmset hincrby incrby decrby
+#       getset mset msetnx exec sort
+#
+# The default is:
+#
+#maxmemory-policy noeviction
+
+# LRU, LFU and minimal TTL algorithms are not precise algorithms but approximated
+# algorithms (in order to save memory), so you can tune it for speed or
+# accuracy. For default Redis will check five keys and pick the one that was
+# used less recently, you can change the sample size using the following
+# configuration directive.
+#
+# The default of 5 produces good enough results. 10 Approximates very closely
+# true LRU but costs more CPU. 3 is faster but not very accurate.
+#
+# maxmemory-samples 5
+
+############################# LAZY FREEING ####################################
+
+# Redis has two primitives to delete keys. One is called DEL and is a blocking
+# deletion of the object. It means that the server stops processing new commands
+# in order to reclaim all the memory associated with an object in a synchronous
+# way. If the key deleted is associated with a small object, the time needed
+# in order to execute the DEL command is very small and comparable to most other
+# O(1) or O(log_N) commands in Redis. However if the key is associated with an
+# aggregated value containing millions of elements, the server can block for
+# a long time (even seconds) in order to complete the operation.
+#
+# For the above reasons Redis also offers non blocking deletion primitives
+# such as UNLINK (non blocking DEL) and the ASYNC option of FLUSHALL and
+# FLUSHDB commands, in order to reclaim memory in background. Those commands
+# are executed in constant time. Another thread will incrementally free the
+# object in the background as fast as possible.
+#
+# DEL, UNLINK and ASYNC option of FLUSHALL and FLUSHDB are user-controlled.
+# It's up to the design of the application to understand when it is a good
+# idea to use one or the other. However the Redis server sometimes has to
+# delete keys or flush the whole database as a side effect of other operations.
+# Specifically Redis deletes objects independently of a user call in the
+# following scenarios:
+#
+# 1) On eviction, because of the maxmemory and maxmemory policy configurations,
+#    in order to make room for new data, without going over the specified
+#    memory limit.
+# 2) Because of expire: when a key with an associated time to live (see the
+#    EXPIRE command) must be deleted from memory.
+# 3) Because of a side effect of a command that stores data on a key that may
+#    already exist. For example the RENAME command may delete the old key
+#    content when it is replaced with another one. Similarly SUNIONSTORE
+#    or SORT with STORE option may delete existing keys. The SET command
+#    itself removes any old content of the specified key in order to replace
+#    it with the specified string.
+# 4) During replication, when a slave performs a full resynchronization with
+#    its master, the content of the whole database is removed in order to
+#    load the RDB file just transfered.
+#
+# In all the above cases the default is to delete objects in a blocking way,
+# like if DEL was called. However you can configure each case specifically
+# in order to instead release memory in a non-blocking way like if UNLINK
+# was called, using the following configuration directives:
+
+lazyfree-lazy-eviction no
+lazyfree-lazy-expire no
+lazyfree-lazy-server-del no
+slave-lazy-flush no
+
+############################## APPEND ONLY MODE ###############################
+
+# By default Redis asynchronously dumps the dataset on disk. This mode is
+# good enough in many applications, but an issue with the Redis process or
+# a power outage may result into a few minutes of writes lost (depending on
+# the configured save points).
+#
+# The Append Only File is an alternative persistence mode that provides
+# much better durability. For instance using the default data fsync policy
+# (see later in the config file) Redis can lose just one second of writes in a
+# dramatic event like a server power outage, or a single write if something
+# wrong with the Redis process itself happens, but the operating system is
+# still running correctly.
+#
+# AOF and RDB persistence can be enabled at the same time without problems.
+# If the AOF is enabled on startup Redis will load the AOF, that is the file
+# with the better durability guarantees.
+#
+# Please check http://redis.io/topics/persistence for more information.
+
+appendonly no
+
+# The name of the append only file (default: "appendonly.aof")
+
+appendfilename "appendonly.aof"
+
+# The fsync() call tells the Operating System to actually write data on disk
+# instead of waiting for more data in the output buffer. Some OS will really flush
+# data on disk, some other OS will just try to do it ASAP.
+#
+# Redis supports three different modes:
+#
+# no: don't fsync, just let the OS flush the data when it wants. Faster.
+# always: fsync after every write to the append only log. Slow, Safest.
+# everysec: fsync only one time every second. Compromise.
+#
+# The default is "everysec", as that's usually the right compromise between
+# speed and data safety. It's up to you to understand if you can relax this to
+# "no" that will let the operating system flush the output buffer when
+# it wants, for better performances (but if you can live with the idea of
+# some data loss consider the default persistence mode that's snapshotting),
+# or on the contrary, use "always" that's very slow but a bit safer than
+# everysec.
+#
+# More details please check the following article:
+# http://antirez.com/post/redis-persistence-demystified.html
+#
+# If unsure, use "everysec".
+
+# appendfsync always
+appendfsync everysec
+# appendfsync no
+
+# When the AOF fsync policy is set to always or everysec, and a background
+# saving process (a background save or AOF log background rewriting) is
+# performing a lot of I/O against the disk, in some Linux configurations
+# Redis may block too long on the fsync() call. Note that there is no fix for
+# this currently, as even performing fsync in a different thread will block
+# our synchronous write(2) call.
+#
+# In order to mitigate this problem it's possible to use the following option
+# that will prevent fsync() from being called in the main process while a
+# BGSAVE or BGREWRITEAOF is in progress.
+#
+# This means that while another child is saving, the durability of Redis is
+# the same as "appendfsync none". In practical terms, this means that it is
+# possible to lose up to 30 seconds of log in the worst scenario (with the
+# default Linux settings).
+#
+# If you have latency problems turn this to "yes". Otherwise leave it as
+# "no" that is the safest pick from the point of view of durability.
+
+no-appendfsync-on-rewrite no
+
+# Automatic rewrite of the append only file.
+# Redis is able to automatically rewrite the log file implicitly calling
+# BGREWRITEAOF when the AOF log size grows by the specified percentage.
+#
+# This is how it works: Redis remembers the size of the AOF file after the
+# latest rewrite (if no rewrite has happened since the restart, the size of
+# the AOF at startup is used).
+#
+# This base size is compared to the current size. If the current size is
+# bigger than the specified percentage, the rewrite is triggered. Also
+# you need to specify a minimal size for the AOF file to be rewritten, this
+# is useful to avoid rewriting the AOF file even if the percentage increase
+# is reached but it is still pretty small.
+#
+# Specify a percentage of zero in order to disable the automatic AOF
+# rewrite feature.
+
+auto-aof-rewrite-percentage 100
+auto-aof-rewrite-min-size 64mb
+
+# An AOF file may be found to be truncated at the end during the Redis
+# startup process, when the AOF data gets loaded back into memory.
+# This may happen when the system where Redis is running
+# crashes, especially when an ext4 filesystem is mounted without the
+# data=ordered option (however this can't happen when Redis itself
+# crashes or aborts but the operating system still works correctly).
+#
+# Redis can either exit with an error when this happens, or load as much
+# data as possible (the default now) and start if the AOF file is found
+# to be truncated at the end. The following option controls this behavior.
+#
+# If aof-load-truncated is set to yes, a truncated AOF file is loaded and
+# the Redis server starts emitting a log to inform the user of the event.
+# Otherwise if the option is set to no, the server aborts with an error
+# and refuses to start. When the option is set to no, the user requires
+# to fix the AOF file using the "redis-check-aof" utility before to restart
+# the server.
+#
+# Note that if the AOF file will be found to be corrupted in the middle
+# the server will still exit with an error. This option only applies when
+# Redis will try to read more data from the AOF file but not enough bytes
+# will be found.
+aof-load-truncated yes
+
+# When rewriting the AOF file, Redis is able to use an RDB preamble in the
+# AOF file for faster rewrites and recoveries. When this option is turned
+# on the rewritten AOF file is composed of two different stanzas:
+#
+#   [RDB file][AOF tail]
+#
+# When loading Redis recognizes that the AOF file starts with the "REDIS"
+# string and loads the prefixed RDB file, and continues loading the AOF
+# tail.
+#
+# This is currently turned off by default in order to avoid the surprise
+# of a format change, but will at some point be used as the default.
+aof-use-rdb-preamble no
+
+################################ LUA SCRIPTING  ###############################
+
+# Max execution time of a Lua script in milliseconds.
+#
+# If the maximum execution time is reached Redis will log that a script is
+# still in execution after the maximum allowed time and will start to
+# reply to queries with an error.
+#
+# When a long running script exceeds the maximum execution time only the
+# SCRIPT KILL and SHUTDOWN NOSAVE commands are available. The first can be
+# used to stop a script that did not yet called write commands. The second
+# is the only way to shut down the server in the case a write command was
+# already issued by the script but the user doesn't want to wait for the natural
+# termination of the script.
+#
+# Set it to 0 or a negative value for unlimited execution without warnings.
+lua-time-limit 5000
+
+################################ REDIS CLUSTER  ###############################
+#
+# ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
+# WARNING EXPERIMENTAL: Redis Cluster is considered to be stable code, however
+# in order to mark it as "mature" we need to wait for a non trivial percentage
+# of users to deploy it in production.
+# ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
+#
+# Normal Redis instances can't be part of a Redis Cluster; only nodes that are
+# started as cluster nodes can. In order to start a Redis instance as a
+# cluster node enable the cluster support uncommenting the following:
+#
+# cluster-enabled yes
+
+# Every cluster node has a cluster configuration file. This file is not
+# intended to be edited by hand. It is created and updated by Redis nodes.
+# Every Redis Cluster node requires a different cluster configuration file.
+# Make sure that instances running in the same system do not have
+# overlapping cluster configuration file names.
+#
+# cluster-config-file nodes-6379.conf
+
+# Cluster node timeout is the amount of milliseconds a node must be unreachable
+# for it to be considered in failure state.
+# Most other internal time limits are multiple of the node timeout.
+#
+# cluster-node-timeout 15000
+
+# A slave of a failing master will avoid to start a failover if its data
+# looks too old.
+#
+# There is no simple way for a slave to actually have an exact measure of
+# its "data age", so the following two checks are performed:
+#
+# 1) If there are multiple slaves able to failover, they exchange messages
+#    in order to try to give an advantage to the slave with the best
+#    replication offset (more data from the master processed).
+#    Slaves will try to get their rank by offset, and apply to the start
+#    of the failover a delay proportional to their rank.
+#
+# 2) Every single slave computes the time of the last interaction with
+#    its master. This can be the last ping or command received (if the master
+#    is still in the "connected" state), or the time that elapsed since the
+#    disconnection with the master (if the replication link is currently down).
+#    If the last interaction is too old, the slave will not try to failover
+#    at all.
+#
+# The point "2" can be tuned by user. Specifically a slave will not perform
+# the failover if, since the last interaction with the master, the time
+# elapsed is greater than:
+#
+#   (node-timeout * slave-validity-factor) + repl-ping-slave-period
+#
+# So for example if node-timeout is 30 seconds, and the slave-validity-factor
+# is 10, and assuming a default repl-ping-slave-period of 10 seconds, the
+# slave will not try to failover if it was not able to talk with the master
+# for longer than 310 seconds.
+#
+# A large slave-validity-factor may allow slaves with too old data to failover
+# a master, while a too small value may prevent the cluster from being able to
+# elect a slave at all.
+#
+# For maximum availability, it is possible to set the slave-validity-factor
+# to a value of 0, which means, that slaves will always try to failover the
+# master regardless of the last time they interacted with the master.
+# (However they'll always try to apply a delay proportional to their
+# offset rank).
+#
+# Zero is the only value able to guarantee that when all the partitions heal
+# the cluster will always be able to continue.
+#
+# cluster-slave-validity-factor 10
+
+# Cluster slaves are able to migrate to orphaned masters, that are masters
+# that are left without working slaves. This improves the cluster ability
+# to resist to failures as otherwise an orphaned master can't be failed over
+# in case of failure if it has no working slaves.
+#
+# Slaves migrate to orphaned masters only if there are still at least a
+# given number of other working slaves for their old master. This number
+# is the "migration barrier". A migration barrier of 1 means that a slave
+# will migrate only if there is at least 1 other working slave for its master
+# and so forth. It usually reflects the number of slaves you want for every
+# master in your cluster.
+#
+# Default is 1 (slaves migrate only if their masters remain with at least
+# one slave). To disable migration just set it to a very large value.
+# A value of 0 can be set but is useful only for debugging and dangerous
+# in production.
+#
+# cluster-migration-barrier 1
+
+# By default Redis Cluster nodes stop accepting queries if they detect there
+# is at least an hash slot uncovered (no available node is serving it).
+# This way if the cluster is partially down (for example a range of hash slots
+# are no longer covered) all the cluster becomes, eventually, unavailable.
+# It automatically returns available as soon as all the slots are covered again.
+#
+# However sometimes you want the subset of the cluster which is working,
+# to continue to accept queries for the part of the key space that is still
+# covered. In order to do so, just set the cluster-require-full-coverage
+# option to no.
+#
+# cluster-require-full-coverage yes
+
+# In order to setup your cluster make sure to read the documentation
+# available at http://redis.io web site.
+
+########################## CLUSTER DOCKER/NAT support  ########################
+
+# In certain deployments, Redis Cluster nodes address discovery fails, because
+# addresses are NAT-ted or because ports are forwarded (the typical case is
+# Docker and other containers).
+#
+# In order to make Redis Cluster working in such environments, a static
+# configuration where each node knows its public address is needed. The
+# following two options are used for this scope, and are:
+#
+# * cluster-announce-ip
+# * cluster-announce-port
+# * cluster-announce-bus-port
+#
+# Each instruct the node about its address, client port, and cluster message
+# bus port. The information is then published in the header of the bus packets
+# so that other nodes will be able to correctly map the address of the node
+# publishing the information.
+#
+# If the above options are not used, the normal Redis Cluster auto-detection
+# will be used instead.
+#
+# Note that when remapped, the bus port may not be at the fixed offset of
+# clients port + 10000, so you can specify any port and bus-port depending
+# on how they get remapped. If the bus-port is not set, a fixed offset of
+# 10000 will be used as usually.
+#
+# Example:
+#
+# cluster-announce-ip 10.1.1.5
+# cluster-announce-port 6379
+# cluster-announce-bus-port 6380
+
+################################## SLOW LOG ###################################
+
+# The Redis Slow Log is a system to log queries that exceeded a specified
+# execution time. The execution time does not include the I/O operations
+# like talking with the client, sending the reply and so forth,
+# but just the time needed to actually execute the command (this is the only
+# stage of command execution where the thread is blocked and can not serve
+# other requests in the meantime).
+#
+# You can configure the slow log with two parameters: one tells Redis
+# what is the execution time, in microseconds, to exceed in order for the
+# command to get logged, and the other parameter is the length of the
+# slow log. When a new command is logged the oldest one is removed from the
+# queue of logged commands.
+
+# The following time is expressed in microseconds, so 1000000 is equivalent
+# to one second. Note that a negative number disables the slow log, while
+# a value of zero forces the logging of every command.
+slowlog-log-slower-than 10000
+
+# There is no limit to this length. Just be aware that it will consume memory.
+# You can reclaim memory used by the slow log with SLOWLOG RESET.
+slowlog-max-len 128
+
+################################ LATENCY MONITOR ##############################
+
+# The Redis latency monitoring subsystem samples different operations
+# at runtime in order to collect data related to possible sources of
+# latency of a Redis instance.
+#
+# Via the LATENCY command this information is available to the user that can
+# print graphs and obtain reports.
+#
+# The system only logs operations that were performed in a time equal or
+# greater than the amount of milliseconds specified via the
+# latency-monitor-threshold configuration directive. When its value is set
+# to zero, the latency monitor is turned off.
+#
+# By default latency monitoring is disabled since it is mostly not needed
+# if you don't have latency issues, and collecting data has a performance
+# impact, that while very small, can be measured under big load. Latency
+# monitoring can easily be enabled at runtime using the command
+# "CONFIG SET latency-monitor-threshold " if needed.
+latency-monitor-threshold 0
+
+############################# EVENT NOTIFICATION ##############################
+
+# Redis can notify Pub/Sub clients about events happening in the key space.
+# This feature is documented at http://redis.io/topics/notifications
+#
+# For instance if keyspace events notification is enabled, and a client
+# performs a DEL operation on key "foo" stored in the Database 0, two
+# messages will be published via Pub/Sub:
+#
+# PUBLISH __keyspace@0__:foo del
+# PUBLISH __keyevent@0__:del foo
+#
+# It is possible to select the events that Redis will notify among a set
+# of classes. Every class is identified by a single character:
+#
+#  K     Keyspace events, published with __keyspace@__ prefix.
+#  E     Keyevent events, published with __keyevent@__ prefix.
+#  g     Generic commands (non-type specific) like DEL, EXPIRE, RENAME, ...
+#  $     String commands
+#  l     List commands
+#  s     Set commands
+#  h     Hash commands
+#  z     Sorted set commands
+#  x     Expired events (events generated every time a key expires)
+#  e     Evicted events (events generated when a key is evicted for maxmemory)
+#  A     Alias for g$lshzxe, so that the "AKE" string means all the events.
+#
+#  The "notify-keyspace-events" takes as argument a string that is composed
+#  of zero or multiple characters. The empty string means that notifications
+#  are disabled.
+#
+#  Example: to enable list and generic events, from the point of view of the
+#           event name, use:
+#
+#  notify-keyspace-events Elg
+#
+#  Example 2: to get the stream of the expired keys subscribing to channel
+#             name __keyevent@0__:expired use:
+#
+#  notify-keyspace-events Ex
+#
+#  By default all notifications are disabled because most users don't need
+#  this feature and the feature has some overhead. Note that if you don't
+#  specify at least one of K or E, no events will be delivered.
+notify-keyspace-events ""
+
+############################### ADVANCED CONFIG ###############################
+
+# Hashes are encoded using a memory efficient data structure when they have a
+# small number of entries, and the biggest entry does not exceed a given
+# threshold. These thresholds can be configured using the following directives.
+hash-max-ziplist-entries 512
+hash-max-ziplist-value 64
+
+# Lists are also encoded in a special way to save a lot of space.
+# The number of entries allowed per internal list node can be specified
+# as a fixed maximum size or a maximum number of elements.
+# For a fixed maximum size, use -5 through -1, meaning:
+# -5: max size: 64 Kb  <-- not recommended for normal workloads
+# -4: max size: 32 Kb  <-- not recommended
+# -3: max size: 16 Kb  <-- probably not recommended
+# -2: max size: 8 Kb   <-- good
+# -1: max size: 4 Kb   <-- good
+# Positive numbers mean store up to _exactly_ that number of elements
+# per list node.
+# The highest performing option is usually -2 (8 Kb size) or -1 (4 Kb size),
+# but if your use case is unique, adjust the settings as necessary.
+list-max-ziplist-size -2
+
+# Lists may also be compressed.
+# Compress depth is the number of quicklist ziplist nodes from *each* side of
+# the list to *exclude* from compression.  The head and tail of the list
+# are always uncompressed for fast push/pop operations.  Settings are:
+# 0: disable all list compression
+# 1: depth 1 means "don't start compressing until after 1 node into the list,
+#    going from either the head or tail"
+#    So: [head]->node->node->...->node->[tail]
+#    [head], [tail] will always be uncompressed; inner nodes will compress.
+# 2: [head]->[next]->node->node->...->node->[prev]->[tail]
+#    2 here means: don't compress head or head->next or tail->prev or tail,
+#    but compress all nodes between them.
+# 3: [head]->[next]->[next]->node->node->...->node->[prev]->[prev]->[tail]
+# etc.
+list-compress-depth 0
+
+# Sets have a special encoding in just one case: when a set is composed
+# of just strings that happen to be integers in radix 10 in the range
+# of 64 bit signed integers.
+# The following configuration setting sets the limit in the size of the
+# set in order to use this special memory saving encoding.
+set-max-intset-entries 512
+
+# Similarly to hashes and lists, sorted sets are also specially encoded in
+# order to save a lot of space. This encoding is only used when the length and
+# elements of a sorted set are below the following limits:
+zset-max-ziplist-entries 128
+zset-max-ziplist-value 64
+
+# HyperLogLog sparse representation bytes limit. The limit includes the
+# 16 bytes header. When an HyperLogLog using the sparse representation crosses
+# this limit, it is converted into the dense representation.
+#
+# A value greater than 16000 is totally useless, since at that point the
+# dense representation is more memory efficient.
+#
+# The suggested value is ~ 3000 in order to have the benefits of
+# the space efficient encoding without slowing down too much PFADD,
+# which is O(N) with the sparse encoding. The value can be raised to
+# ~ 10000 when CPU is not a concern, but space is, and the data set is
+# composed of many HyperLogLogs with cardinality in the 0 - 15000 range.
+hll-sparse-max-bytes 3000
+
+# Active rehashing uses 1 millisecond every 100 milliseconds of CPU time in
+# order to help rehashing the main Redis hash table (the one mapping top-level
+# keys to values). The hash table implementation Redis uses (see dict.c)
+# performs a lazy rehashing: the more operation you run into a hash table
+# that is rehashing, the more rehashing "steps" are performed, so if the
+# server is idle the rehashing is never complete and some more memory is used
+# by the hash table.
+#
+# The default is to use this millisecond 10 times every second in order to
+# actively rehash the main dictionaries, freeing memory when possible.
+#
+# If unsure:
+# use "activerehashing no" if you have hard latency requirements and it is
+# not a good thing in your environment that Redis can reply from time to time
+# to queries with 2 milliseconds delay.
+#
+# use "activerehashing yes" if you don't have such hard requirements but
+# want to free memory asap when possible.
+activerehashing yes
+
+# The client output buffer limits can be used to force disconnection of clients
+# that are not reading data from the server fast enough for some reason (a
+# common reason is that a Pub/Sub client can't consume messages as fast as the
+# publisher can produce them).
+#
+# The limit can be set differently for the three different classes of clients:
+#
+# normal -> normal clients including MONITOR clients
+# slave  -> slave clients
+# pubsub -> clients subscribed to at least one pubsub channel or pattern
+#
+# The syntax of every client-output-buffer-limit directive is the following:
+#
+# client-output-buffer-limit    
+#
+# A client is immediately disconnected once the hard limit is reached, or if
+# the soft limit is reached and remains reached for the specified number of
+# seconds (continuously).
+# So for instance if the hard limit is 32 megabytes and the soft limit is
+# 16 megabytes / 10 seconds, the client will get disconnected immediately
+# if the size of the output buffers reach 32 megabytes, but will also get
+# disconnected if the client reaches 16 megabytes and continuously overcomes
+# the limit for 10 seconds.
+#
+# By default normal clients are not limited because they don't receive data
+# without asking (in a push way), but just after a request, so only
+# asynchronous clients may create a scenario where data is requested faster
+# than it can read.
+#
+# Instead there is a default limit for pubsub and slave clients, since
+# subscribers and slaves receive data in a push fashion.
+#
+# Both the hard or the soft limit can be disabled by setting them to zero.
+client-output-buffer-limit normal 0 0 0
+client-output-buffer-limit slave 256mb 64mb 60
+client-output-buffer-limit pubsub 32mb 8mb 60
+
+# Client query buffers accumulate new commands. They are limited to a fixed
+# amount by default in order to avoid that a protocol desynchronization (for
+# instance due to a bug in the client) will lead to unbound memory usage in
+# the query buffer. However you can configure it here if you have very special
+# needs, such us huge multi/exec requests or alike.
+#
+# client-query-buffer-limit 1gb
+
+# In the Redis protocol, bulk requests, that are, elements representing single
+# strings, are normally limited ot 512 mb. However you can change this limit
+# here.
+#
+# proto-max-bulk-len 512mb
+
+# Redis calls an internal function to perform many background tasks, like
+# closing connections of clients in timeout, purging expired keys that are
+# never requested, and so forth.
+#
+# Not all tasks are performed with the same frequency, but Redis checks for
+# tasks to perform according to the specified "hz" value.
+#
+# By default "hz" is set to 10. Raising the value will use more CPU when
+# Redis is idle, but at the same time will make Redis more responsive when
+# there are many keys expiring at the same time, and timeouts may be
+# handled with more precision.
+#
+# The range is between 1 and 500, however a value over 100 is usually not
+# a good idea. Most users should use the default of 10 and raise this up to
+# 100 only in environments where very low latency is required.
+hz 10
+
+# When a child rewrites the AOF file, if the following option is enabled
+# the file will be fsync-ed every 32 MB of data generated. This is useful
+# in order to commit the file to the disk more incrementally and avoid
+# big latency spikes.
+aof-rewrite-incremental-fsync yes
+
+# Redis LFU eviction (see maxmemory setting) can be tuned. However it is a good
+# idea to start with the default settings and only change them after investigating
+# how to improve the performances and how the keys LFU change over time, which
+# is possible to inspect via the OBJECT FREQ command.
+#
+# There are two tunable parameters in the Redis LFU implementation: the
+# counter logarithm factor and the counter decay time. It is important to
+# understand what the two parameters mean before changing them.
+#
+# The LFU counter is just 8 bits per key, it's maximum value is 255, so Redis
+# uses a probabilistic increment with logarithmic behavior. Given the value
+# of the old counter, when a key is accessed, the counter is incremented in
+# this way:
+#
+# 1. A random number R between 0 and 1 is extracted.
+# 2. A probability P is calculated as 1/(old_value*lfu_log_factor+1).
+# 3. The counter is incremented only if R < P.
+#
+# The default lfu-log-factor is 10. This is a table of how the frequency
+# counter changes with a different number of accesses with different
+# logarithmic factors:
+#
+# +--------+------------+------------+------------+------------+------------+
+# | factor | 100 hits   | 1000 hits  | 100K hits  | 1M hits    | 10M hits   |
+# +--------+------------+------------+------------+------------+------------+
+# | 0      | 104        | 255        | 255        | 255        | 255        |
+# +--------+------------+------------+------------+------------+------------+
+# | 1      | 18         | 49         | 255        | 255        | 255        |
+# +--------+------------+------------+------------+------------+------------+
+# | 10     | 10         | 18         | 142        | 255        | 255        |
+# +--------+------------+------------+------------+------------+------------+
+# | 100    | 8          | 11         | 49         | 143        | 255        |
+# +--------+------------+------------+------------+------------+------------+
+#
+# NOTE: The above table was obtained by running the following commands:
+#
+#   redis-benchmark -n 1000000 incr foo
+#   redis-cli object freq foo
+#
+# NOTE 2: The counter initial value is 5 in order to give new objects a chance
+# to accumulate hits.
+#
+# The counter decay time is the time, in minutes, that must elapse in order
+# for the key counter to be divided by two (or decremented if it has a value
+# less <= 10).
+#
+# The default value for the lfu-decay-time is 1. A Special value of 0 means to
+# decay the counter every time it happens to be scanned.
+#
+# lfu-log-factor 10
+# lfu-decay-time 1
+
+########################### ACTIVE DEFRAGMENTATION #######################
+#
+# WARNING THIS FEATURE IS EXPERIMENTAL. However it was stress tested
+# even in production and manually tested by multiple engineers for some
+# time.
+#
+# What is active defragmentation?
+# -------------------------------
+#
+# Active (online) defragmentation allows a Redis server to compact the
+# spaces left between small allocations and deallocations of data in memory,
+# thus allowing to reclaim back memory.
+#
+# Fragmentation is a natural process that happens with every allocator (but
+# less so with Jemalloc, fortunately) and certain workloads. Normally a server
+# restart is needed in order to lower the fragmentation, or at least to flush
+# away all the data and create it again. However thanks to this feature
+# implemented by Oran Agra for Redis 4.0 this process can happen at runtime
+# in an "hot" way, while the server is running.
+#
+# Basically when the fragmentation is over a certain level (see the
+# configuration options below) Redis will start to create new copies of the
+# values in contiguous memory regions by exploiting certain specific Jemalloc
+# features (in order to understand if an allocation is causing fragmentation
+# and to allocate it in a better place), and at the same time, will release the
+# old copies of the data. This process, repeated incrementally for all the keys
+# will cause the fragmentation to drop back to normal values.
+#
+# Important things to understand:
+#
+# 1. This feature is disabled by default, and only works if you compiled Redis
+#    to use the copy of Jemalloc we ship with the source code of Redis.
+#    This is the default with Linux builds.
+#
+# 2. You never need to enable this feature if you don't have fragmentation
+#    issues.
+#
+# 3. Once you experience fragmentation, you can enable this feature when
+#    needed with the command "CONFIG SET activedefrag yes".
+#
+# The configuration parameters are able to fine tune the behavior of the
+# defragmentation process. If you are not sure about what they mean it is
+# a good idea to leave the defaults untouched.
+
+# Enabled active defragmentation
+# activedefrag yes
+
+# Minimum amount of fragmentation waste to start active defrag
+# active-defrag-ignore-bytes 100mb
+
+# Minimum percentage of fragmentation to start active defrag
+# active-defrag-threshold-lower 10
+
+# Maximum percentage of fragmentation at which we use maximum effort
+# active-defrag-threshold-upper 100
+
+# Minimal effort for defrag in CPU percentage
+# active-defrag-cycle-min 25
+
+# Maximal effort for defrag in CPU percentage
+# active-defrag-cycle-max 75
+
+
diff --git a/python/data/redis/startServer.sh b/python/data/redis/startServer.sh
new file mode 100644
index 0000000..ff328b1
--- /dev/null
+++ b/python/data/redis/startServer.sh
@@ -0,0 +1,6 @@
+#!/bin/bash 
+#source activate redisEnv
+
+#redis-server --dir $1 --dbfilename $2 --port $3
+redis-server $1/redis.conf --dir $1 --dbfilename $2 --port $3 --daemonize yes
+
diff --git a/python/data/redis/stopServer.sh b/python/data/redis/stopServer.sh
new file mode 100644
index 0000000..dd3bcfb
--- /dev/null
+++ b/python/data/redis/stopServer.sh
@@ -0,0 +1,3 @@
+#!/bin/bash
+source activate redisEnv
+redis-cli -p $1 shutdown save
diff --git a/python/data/redisImport.sh b/python/data/redisImport.sh
new file mode 100644
index 0000000..3d422db
--- /dev/null
+++ b/python/data/redisImport.sh
@@ -0,0 +1,6 @@
+#!/bin/bash
+
+file=$1
+port=$2
+pairName=$3
+awk -F, '{ print "SADD pairs", "\"'$pairName'_"$1"_"$2"\"" }' "$file" | sed s/$/$'\r'/ | redis-cli -p $port --pipe #--pipe-timeout 0
diff --git a/python/data/redisSingleImport.sh b/python/data/redisSingleImport.sh
new file mode 100644
index 0000000..6ce7ebb
--- /dev/null
+++ b/python/data/redisSingleImport.sh
@@ -0,0 +1,6 @@
+#!/bin/bash
+
+file=$1
+port=$2
+pairName=$3
+awk -F, '{ print "SADD", "compare","\"'$pairName'/"$1"/"$2"\"",0 }' "$file" | sed s/$/$'\r'/ | redis-cli -p $port --pipe #--pipe-timeout 0
diff --git a/python/data/singleBR.pickle b/python/data/singleBR.pickle
new file mode 100644
index 0000000..ef2fd4d
Binary files /dev/null and b/python/data/singleBR.pickle differ
diff --git a/python/data/startBugzoo.sh b/python/data/startBugzoo.sh
new file mode 100644
index 0000000..746b53e
--- /dev/null
+++ b/python/data/startBugzoo.sh
@@ -0,0 +1,5 @@
+#!/bin/bash 
+source activate fixminerEnv
+
+bugzood -p $1
+
diff --git a/python/data/statsactions.csv b/python/data/statsactions.csv
new file mode 100644
index 0000000..e3b9f5d
--- /dev/null
+++ b/python/data/statsactions.csv
@@ -0,0 +1,425 @@
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diff --git a/python/data/statsshapes.csv b/python/data/statsshapes.csv
new file mode 100644
index 0000000..32dad94
--- /dev/null
+++ b/python/data/statsshapes.csv
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diff --git a/python/data/statstokens.csv b/python/data/statstokens.csv
new file mode 100644
index 0000000..873f3d2
--- /dev/null
+++ b/python/data/statstokens.csv
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+VariableDeclarationStatement-3-0-0-0,2
+VariableDeclarationStatement-3-0-0-11,2
+VariableDeclarationStatement-3-0-0-7,2
+VariableDeclarationStatement-3-0-0-6,2
+VariableDeclarationStatement-3-0-0-1,2
+VariableDeclarationStatement-3-0-0-10,2
+VariableDeclarationStatement-3-0-0-8,2
+VariableDeclarationStatement-3-0-0-4,2
+VariableDeclarationStatement-3-0-0-3,2
+VariableDeclarationStatement-3-0-0-12,2
+VariableDeclarationStatement-3-0-0-13,2
+VariableDeclarationStatement-3-0-0-5,2
+VariableDeclarationStatement-12-1-0-0,2
+SuperConstructorInvocation-6-0-0-0,2
+SuperConstructorInvocation-4-0-0-0,2
+CatchClause-9-1-0-0,2
+ReturnStatement-3-3-0-19,2
+ReturnStatement-3-3-0-21,2
+ExpressionStatement-4-3-0-3,2
+ForStatement-19-0-0-0,2
+WhileStatement-8-0-0-0,2
+EnhancedForStatement-16-1-0-0,2
+EnhancedForStatement-4-1-0-0,2
+EnhancedForStatement-3-0-0-0,2
+EnhancedForStatement-2-0-1-0,2
+EnhancedForStatement-2-0-1-1,2
+EnhancedForStatement-14-1-0-0,2
+ConstructorInvocation-13-0-0-0,2
+ConstructorInvocation-5-0-0-0,2
+MethodDeclaration-35-1-0-0,2
+MethodDeclaration-42-0-0-0,2
+MethodDeclaration-6-2-0-0,2
+MethodDeclaration-54-0-0-0,2
+MethodDeclaration-4-1-0-0,2
+MethodDeclaration-4-1-0-1,2
+VariableDeclarationStatement-18-0-0-0,2
+MethodDeclaration-3-2-0-2,2
+MethodDeclaration-12-9-0-0,2
+MethodDeclaration-14-0-0-0,2
+ExpressionStatement-9-2-0-1,2
+ExpressionStatement-11-42-0-0,2
+ExpressionStatement-16-4-0-0,2
+ExpressionStatement-26-1-0-0,2
+ExpressionStatement-8-25-2-0,2
+ExpressionStatement-4-3-0-6,2
+ExpressionStatement-4-3-0-1,2
+ExpressionStatement-4-3-0-4,2
+WhileStatement-17-0-0-0,2
+IfStatement-22-1-0-0,2
+ReturnStatement-3-3-0-4,2
+IfStatement-5-3-0-2,2
+ReturnStatement-3-3-0-15,2
+ReturnStatement-3-3-0-3,2
+ReturnStatement-3-3-0-12,2
+ReturnStatement-3-3-0-2,2
+ReturnStatement-3-3-0-13,2
+ReturnStatement-3-3-0-5,2
+ReturnStatement-3-3-0-14,2
+ReturnStatement-3-3-0-22,2
+ReturnStatement-2-0-2-2,2
+ReturnStatement-13-1-0-0,2
+SynchronizedStatement-7-0-0-0,2
+SynchronizedStatement-4-0-0-1,2
+SynchronizedStatement-12-0-0-0,2
+SynchronizedStatement-2-0-0-0,2
+IfStatement-18-10-0-0,2
+IfStatement-9-0-1-0,2
+IfStatement-11-0-2-0,2
+IfStatement-29-0-0-0,2
+IfStatement-74-0-0-0,2
+IfStatement-19-1-0-0,2
+IfStatement-4-4-1-0,2
+IfStatement-3-1-0-0,2
+IfStatement-3-1-0-2,2
+IfStatement-13-3-0-0,2
+IfStatement-5-3-0-0,2
+IfStatement-5-3-0-1,2
+IfStatement-5-3-0-3,2
+FieldDeclaration-5-2-1-0,2
diff --git a/python/data/subjects.csv b/python/data/subjects.csv
new file mode 100644
index 0000000..8936f24
--- /dev/null
+++ b/python/data/subjects.csv
@@ -0,0 +1,47 @@
+Group,Subject,Repo,GitRepo,Branch
+Apache,CAMEL,camel,https://github.com/apache/camel.git,master
+Apache,HBASE,hbase,https://github.com/apache/hbase.git,master
+Apache,HIVE,hive,https://github.com/apache/hive.git,master
+Commons,CODEC,commons-codec,https://github.com/apache/commons-codec.git,trunk
+Commons,COLLECTIONS,commons-collections,https://github.com/apache/commons-collections.git,master
+Commons,COMPRESS,commons-compress,https://github.com/apache/commons-compress.git,master
+Commons,CONFIGURATION,commons-configuration,https://github.com/apache/commons-configuration.git,trunk
+Commons,CRYPTO,commons-crypto,https://github.com/apache/commons-crypto.git,master
+Commons,CSV,commons-csv,https://github.com/apache/commons-csv.git,master
+Commons,IO,commons-io,https://github.com/apache/commons-io.git,master
+Commons,WEAVER,commons-weaver,https://github.com/apache/commons-weaver.git,master
+JBoss,ENTESB,fuse,https://github.com/jboss-fuse/fuse.git,6.3.0.redhat
+JBoss,JBMETA,metadata,https://github.com/jboss/metadata.git,master
+Wildfly,ELY,wildfly-elytron,https://github.com/wildfly-security/wildfly-elytron.git,master
+Wildfly,SWARM,wildfly-swarm,https://github.com/wildfly-swarm/wildfly-swarm.git,master
+Wildfly,WFARQ,wildfly-arquillian,https://github.com/wildfly/wildfly-arquillian.git,master
+Wildfly,WFCORE,wildfly-core,https://github.com/wildfly/wildfly-core.git,master
+Wildfly,WFLY,wildfly,https://github.com/wildfly/wildfly.git,master
+Wildfly,WFMP,wildfly-maven-plugin,https://github.com/wildfly/wildfly-maven-plugin.git,master
+Spring,AMQP,spring-amqp,https://github.com/spring-projects/spring-amqp,master
+Spring,ANDROID,spring-android,https://github.com/spring-projects/spring-android,master
+Spring,BATCH,spring-batch,https://github.com/spring-projects/spring-batch,master
+Spring,BATCHADM,spring-batch-admin,https://github.com/spring-projects/spring-batch-admin,master
+Spring,DATACMNS,spring-data-commons,https://github.com/spring-projects/spring-data-commons,master
+Spring,DATAGRAPH,spring-data-neo4j,https://github.com/spring-projects/spring-data-neo4j,master
+Spring,DATAJPA,spring-data-jpa,https://github.com/spring-projects/spring-data-jpa,master
+Spring,DATAMONGO,spring-data-mongodb,https://github.com/spring-projects/spring-data-mongodb,master
+Spring,DATAREDIS,spring-data-redis,https://github.com/spring-projects/spring-data-redis,master
+Spring,DATAREST,spring-data-rest,https://github.com/spring-projects/spring-data-rest,master
+Spring,LDAP,spring-ldap,https://github.com/spring-projects/spring-ldap,master
+Spring,MOBILE,spring-mobile,https://github.com/spring-projects/spring-mobile,master
+Spring,ROO,spring-roo,https://github.com/spring-projects/spring-roo,master
+Spring,SEC,spring-security,https://github.com/spring-projects/spring-security,master
+Spring,SECOAUTH,spring-security-oauth,https://github.com/spring-projects/spring-security-oauth,master
+Spring,SGF,spring-data-gemfire,https://github.com/spring-projects/spring-data-gemfire,master
+Spring,SHDP,spring-hadoop,https://github.com/spring-projects/spring-hadoop,master
+Spring,SHL,spring-shell,https://github.com/spring-projects/spring-shell,master
+Spring,SOCIAL,spring-social,https://github.com/spring-projects/spring-social,master
+Spring,SOCIALFB,spring-social-facebook,https://github.com/spring-projects/spring-social-facebook,master
+Spring,SOCIALLI,spring-social-linkedin,https://github.com/spring-projects/spring-social-linkedin,master
+Spring,SOCIALTW,spring-social-twitter,https://github.com/spring-projects/spring-social-twitter,master
+Spring,SPR,spring-framework,https://github.com/spring-projects/spring-framework,master
+Spring,SWF,spring-webflow,https://github.com/spring-projects/spring-webflow,master
+Spring,SWS,spring-ws,https://github.com/spring-projects/spring-ws,master
+
+
diff --git a/python/dataset.csv b/python/dataset.csv
new file mode 100644
index 0000000..e8d08cf
--- /dev/null
+++ b/python/dataset.csv
@@ -0,0 +1,50 @@
+repo,bid
+camel,1366
+closure-compiler.git,0
+commons-codec,11
+commons-collections,56
+commons-compress,73
+commons-configuration,89
+commons-crypto,9
+commons-csv,18
+commons-io,58
+commons-lang,129
+commons-lang.git,0
+commons-math,157
+commons-math.git,0
+fuse,15
+hbase,2169
+hive,2641
+metadata,14
+mockito.git,0
+spring-amqp,89
+spring-android,5
+spring-batch,224
+spring-batch-admin,11
+spring-data-commons,151
+spring-data-gemfire,35
+spring-data-jpa,112
+spring-data-mongodb,190
+spring-data-neo4j,19
+spring-data-redis,65
+spring-data-rest,91
+spring-framework,1098
+spring-hadoop,35
+spring-ldap,26
+spring-mobile,11
+spring-roo,414
+spring-security,304
+spring-security-oauth,66
+spring-shell,11
+spring-social,14
+spring-social-facebook,12
+spring-social-linkedin,2
+spring-social-twitter,9
+spring-webflow,84
+spring-ws,101
+wildfly,802
+wildfly-arquillian,8
+wildfly-core,547
+wildfly-elytron,217
+wildfly-maven-plugin,13
+wildfly-swarm,131
diff --git a/python/dataset.py b/python/dataset.py
new file mode 100644
index 0000000..1cc14c5
--- /dev/null
+++ b/python/dataset.py
@@ -0,0 +1,169 @@
+from common.commons import *
+
+DATA_PATH = os.environ["DATA_PATH"]
+REPO_PATH = os.environ["REPO_PATH"]
+def prepareFiles(t):
+    try:
+        sha, repoName = t
+
+        shaOld = sha + '^'
+
+        repo = join(REPO_PATH,repoName)
+        gumInputRepo = join(DATA_PATH, 'gumInput', repoName)
+        if not os.path.exists(join(gumInputRepo)):
+            os.makedirs(gumInputRepo)
+
+        cmd = 'git -C ' + repo + ' diff --name-only ' + shaOld + '..'+sha
+
+        output, errors = shellGitCheckout(cmd, 'latin1')
+        files = output.strip().split('\n')
+
+        # if len(nonJava) > 0:
+        #     logging.warning('Skipping commit %s',sha)
+        #     return
+        # if len(files) != 1:
+        #     return
+
+        nonTest = [f for f in files if not re.search('test', f, re.I) and f.endswith('java')]
+
+        if len(nonTest) > 1:
+            return
+
+        cmd = 'git -C ' + repo + ' rev-parse --short=6 ' + shaOld
+
+        output, errors = shellGitCheckout(cmd, 'latin1')
+        shaOld = output.strip()
+
+        cmd = 'git -C ' + repo + ' rev-parse --short=6 ' + sha
+        output, errors = shellGitCheckout(cmd, 'latin1')
+        sha = output.strip()
+
+        if isinstance(nonTest, list):
+            for file in nonTest:
+                checkoutFiles(sha,shaOld, repoName, file,'gumInput')
+
+
+
+    except Exception as e:
+        print(e)
+
+
+def prepareFilesDefects4J(repo,repoName,shaOld):
+    try:
+        # sha, repoName = t
+
+        sha = shaOld + '^'
+
+        # repo = join(REPO_PATH,repoName)
+        gumInputRepo = join(DATA_PATH, 'Defects4J2', repoName)
+        if not os.path.exists(join(gumInputRepo)):
+            os.makedirs(gumInputRepo)
+
+        cmd = 'git -C ' + repo + ' diff --name-only ' + shaOld + '..'+sha
+        output, errors = shellGitCheckout(cmd, 'latin1')
+        files = output.strip().split('\n')
+        # nonJava = [f for f in files if not f.endswith('.java')]
+        nonTest = [f for f in files if not re.search('test',f,re.I)]
+        # if len(nonJava) > 0:
+        #     logging.warning('Skipping commit %s',sha)
+        #     return
+        # if len(files) != 1:
+        #     return
+
+        nonTest = [f for f in files if not re.search('test', f, re.I) and f.endswith('java')]
+
+        if len(nonTest) > 1:
+            return
+
+        cmd = 'git -C ' + repo + ' rev-parse --short=6 ' + shaOld
+        output, errors = shellGitCheckout(cmd, 'latin1')
+        shaOld = output.strip()
+
+        cmd = 'git -C ' + repo + ' rev-parse --short=6 ' + sha
+        output, errors = shellGitCheckout(cmd, 'latin1')
+        sha = output.strip()
+
+        if isinstance(nonTest, list):
+            for file in nonTest:
+                checkoutFiles(sha,shaOld, repoName, file,'Defects4J2',repo)
+
+
+    except Exception as e:
+        print(e)
+
+
+
+
+def checkoutFiles(sha,shaOld,repoName, filePath,type, repo=None):
+    try:
+        # folderDiff = join(DATA_PATH, 'gumInput',repoName, 'DiffEntries')
+        folderDiff = join(DATA_PATH, type,repoName, 'DiffEntries')
+        folderPrev = join(DATA_PATH, type,repoName, 'prevFiles')
+        folderRev = join(DATA_PATH, type,repoName, 'revFiles')
+        if not os.path.exists(folderDiff):
+            os.mkdir(folderDiff)
+
+        if not os.path.exists(folderPrev):
+            os.mkdir(folderPrev)
+
+        if not os.path.exists(folderRev):
+            os.mkdir(folderRev)
+
+        if repo is None:
+            repo = join(REPO_PATH,repoName)
+
+
+        savePath = filePath.replace('/','#')
+        if not isfile(folderDiff + '/' + sha + '_' + shaOld + '_' + savePath.replace('.java', '.txt')):
+
+            cmd = 'git -C ' + repo + ' diff -U ' + shaOld + ':' + filePath + '..' + sha + ':' + filePath  # + '> ' + folderDiff + '/' + sha + '_' + shaOld + '_' + savePath.replace('.java','.txt')
+
+            output,errors = shellGitCheckout(cmd,'latin1')
+            if errors:
+                # print(errors)
+                raise FileNotFoundError
+
+            regex = r"@@\s\-\d+,*\d*\s\+\d+,*\d*\s@@ ?(.*\n)*"
+            match = re.search(regex, output)
+            if not match:
+                return
+                # print()
+            not_matched, matched = output[:match.start()], match.group()
+            numberOfHunks = re.findall('@@\s\-\d+,*\d*\s\+\d+,*\d*\s@@', matched)
+            if len(numberOfHunks) == 0:
+                return
+            diffFile = shaOld + '\n' + matched.replace(' @@ ', ' @@\n')
+            with open(folderDiff + '/' + sha + '_' + shaOld + '_' + savePath.replace('.java', '.txt'),
+                      'w') as writeFile:
+                writeFile.writelines(diffFile)
+
+
+
+            cmd = 'git -C ' + repo + ' show ' + sha + ':' + filePath + '> ' + folderRev + '/' + sha + '_' + shaOld + '_' +savePath
+
+            if errors:
+                # print(errors)
+                raise FileNotFoundError
+            o,errors= shellGitCheckout(cmd,'latin1')
+            cmd = 'git -C ' + repo + ' show ' + shaOld + ':' + filePath + '> ' + folderPrev + '/' + 'prev_'+sha + '_' + shaOld + '_' +savePath
+            if errors:
+                # print(errors)
+                raise FileNotFoundError
+
+            o,errors = shellGitCheckout(cmd,'latin1')
+            if errors:
+                # print(errors)
+                raise FileNotFoundError
+
+    except FileNotFoundError as fnfe:
+        if isfile(folderRev + '/' + sha + '_' + shaOld + '_' +savePath):
+            os.remove(folderRev + '/' + sha + '_' + shaOld + '_' +savePath)
+        if isfile(folderPrev + '/' + 'prev_'+sha + '_' + shaOld + '_' +savePath):
+            os.remove(folderPrev + '/' + 'prev_'+sha + '_' + shaOld + '_' +savePath)
+        if isfile(folderDiff + '/' + sha + '_' + shaOld + '_' + savePath.replace('.java','.txt')):
+            os.remove(folderDiff + '/' + sha + '_' + shaOld + '_' + savePath.replace('.java','.txt'))
+        # print(fnfe)
+        # raise Exception(fnfe)
+    except Exception as e:
+        # print(e)
+        raise Exception(e)
diff --git a/python/dataset.tex b/python/dataset.tex
new file mode 100644
index 0000000..ac32563
--- /dev/null
+++ b/python/dataset.tex
@@ -0,0 +1,50 @@
+\begin{tabular}{llr}
+\toprule
+{} &                   repo &   bid \\
+\midrule
+0  &           APACHE-CAMEL &  1366 \\
+1  &          APACHE-COMMONS-CODEC &    11 \\
+2  &    APACHE-COMMONS-COLLECTIONS &    56 \\
+3  &       APACHE-COMMONS-COMPRESS &    73 \\
+4  &  APACHE-COMMONS-CONFIGURATION &    89 \\
+5  &         APACHE-COMMONS-CRYPTO &     9 \\
+6  &            APACHE-COMMONS-CSV &    18 \\
+7  &             APACHE-COMMONS-IO &    58 \\
+9  &           APACHE-HBASE &  2169 \\
+10 &            APACHE-HIVE &  2641 \\
+8  &           JBOSS-ENTESB &    15 \\
+11 &           JBOSS-JBMETA &    14 \\
+12 &            SPRING-AMQP &    89 \\
+13 &         SPRING-ANDROID &     5 \\
+14 &           SPRING-BATCH &   224 \\
+15 &        SPRING-BATCHADM &    11 \\
+16 &        SPRING-DATACMNS &   151 \\
+20 &       SPRING-DATAGRAPH &    19 \\
+18 &         SPRING-DATAJPA &   112 \\
+19 &       SPRING-DATAMONGO &   190 \\
+21 &       SPRING-DATAREDIS &    65 \\
+22 &        SPRING-DATAREST &    91 \\
+25 &            SPRING-LDAP &    26 \\
+26 &          SPRING-MOBILE &    11 \\
+27 &             SPRING-ROO &   414 \\
+28 &             SPRING-SEC &   304 \\
+29 &        SPRING-SECOAUTH &    66 \\
+17 &             SPRING-SGF &    35 \\
+24 &            SPRING-SHDP &    35 \\
+30 &             SPRING-SHL &    11 \\
+31 &          SPRING-SOCIAL &    14 \\
+32 &        SPRING-SOCIALFB &    12 \\
+33 &        SPRING-SOCIALLI &     2 \\
+34 &        SPRING-SOCIALTW &     9 \\
+23 &             SPRING-SPR &  1098 \\
+35 &             SPRING-SWF &    84 \\
+36 &             SPRING-SWS &   101 \\
+40 &            WILDFLY-ELY &   217 \\
+42 &          WILDFLY-SWARM &   131 \\
+38 &          WILDFLY-WFARQ &     8 \\
+39 &         WILDFLY-WFCORE &   547 \\
+37 &           WILDFLY-WFLY &   802 \\
+41 &           WILDFLY-WFMP &    13 \\
+11 &        Total & 1141\\
+\bottomrule
+\end{tabular}
diff --git a/python/defects4JDataset.py b/python/defects4JDataset.py
new file mode 100644
index 0000000..94e3467
--- /dev/null
+++ b/python/defects4JDataset.py
@@ -0,0 +1,33 @@
+from common.commons import *
+
+
+
+
+
+
+def core():
+
+    projects = [('Math',106,'commons-math'),('Lang',65,'commons-lang'),('Closure',133,'closure-compiler'),('Time',27,'joda-time'),('Mockito',38,'mockito'),('Chart',26,'jfreechart')]
+    path = '/Users/anil.koyuncu/KUI/Defects4JData/'
+    with open('mapping.csv','a') as f:
+        for p in projects:
+            pjName,iterSize,repoName = p
+
+            for idx in range(iterSize):
+                idx+=1
+
+                # cmd = '~/bugStudy/defects4j/framework/bin/defects4j info -p ' + pjDict[project]
+                repoPath = join(path,pjName+'_'+str(idx))
+                cmd = 'git -C ' +repoPath+ ' checkout -- .'
+                output, errors = shellGitCheckout(cmd, 'latin1')
+                cmd = 'git -C '+repoPath+ ' log --pretty=format:%H -1'
+                output, errors = shellGitCheckout(cmd, 'latin1')
+
+                line = repoName + ' ' + output + ' ' + str(idx) + '\n'
+                f.write(line)
+                #git diff df055bf81b7aa846530eadb7904d911cf84372c9..df055bf81b7aa846530eadb7904d911cf84372c9 ^
+
+                from dataset import prepareFilesDefects4J
+                prepareFilesDefects4J(repoPath,repoName,output)
+
+                # id = getIssueId('defects/'+pjName+'/'+str(idx)+'.log',pjName)
diff --git a/python/filterBugFixingCommits.py b/python/filterBugFixingCommits.py
new file mode 100644
index 0000000..c75a265
--- /dev/null
+++ b/python/filterBugFixingCommits.py
@@ -0,0 +1,156 @@
+from common.commons import *
+
+ROOT_DIR = os.environ["ROOT_DIR"]
+REPO_PATH = os.environ["REPO_PATH"]
+DATA_PATH = os.environ["DATA_PATH"]
+COMMIT_DFS = os.environ["COMMIT_DFS"]
+BUG_POINT = os.environ["BUG_POINT"]
+COMMIT_FOLDER = os.environ["COMMIT_FOLDER"]
+
+
+
+
+def getLast(bugID):
+    if isfile(join(BUG_POINT, bugID + ".pickle")):
+        return
+    else:
+        subject = bugID.split('-')[0]
+        subjects = pd.read_csv(join(DATA_PATH, 'subjects.csv'))
+        repo = subjects.query("Subject == '{0}'".format(subject)).iloc[0].Repo
+        sourceDF = load_zipped_pickle(join(COMMIT_DFS, repo + '.pickle'))
+        sourceDF['fix'] = sourceDF['fix'].apply(lambda x: x.strip() if not x is None else x)
+        aDf = sourceDF[sourceDF.fix == bugID]
+        if len(aDf > 0):
+            dateCheck = aDf.sort_values('commitDate').iloc[0].commitDate
+            filtered = sourceDF.query("commitDate < '{0}'".format(dateCheck ))
+            filtered['dateCheck'] = dateCheck
+            filtered = filtered.head(1)
+            save_zipped_pickle(filtered,join(BUG_POINT,bugID + ".pickle"))
+
+
+def markFix(subject,repoName):
+    subjects = pd.read_csv(join(DATA_PATH, 'subjects.csv'))
+    branch = subjects.query("Subject == '{0}'".format(subject))['Branch'].values.tolist()[0]
+    cmd = 'git -C ' + join(REPO_PATH, repoName) + ' checkout -f '+branch
+
+    output, err = shellGitCheckout(cmd,enc='latin1')
+
+    m = re.search(branch, err)
+
+    while not m:
+        time.sleep(10)
+        logging.info('Waiting for checkout')
+
+    aDF = load_zipped_pickle(join(COMMIT_DFS, repoName + '.pickle'))
+    aDF['fix'] = aDF['commit'].apply(lambda x: getBugIds(x, subject, repoName))
+    return aDF
+
+def getBugIds(x,subject,repoName):
+
+
+    cmd = 'git -C ' + REPO_PATH+repoName + ' show --quiet ' + x
+
+    output = shellCallTemplate(cmd)
+    pattern = r"[\s:\[\(#\-/]("+subject+"\-[0-9]+)"
+    match = re.search(pattern, output, re.IGNORECASE)
+    if not match:
+        return None
+    if (len(match.groups()) == 1):
+        matched = match.group(1)
+    else:
+        logging.error('too many match groups')
+    matched
+    return matched
+
+
+
+# def getLasts(subjec,predict = False):
+#     if not os.path.exists(BUG_POINT):
+#         os.mkdir(BUG_POINT)
+#
+#     if predict:
+#         bugIDS = load_zipped_pickle(join(CODE_PATH, subjec+'BugReportsExport.pickle'))
+#         logging.info("Extracting bug points for prediction")
+#         selectedIds = bugIDS.bugID.unique().tolist()
+#     else:
+#         subjects = pd.read_csv(join(CODE_PATH, 'subjects.csv'))
+#         repo = subjects.query("Subject == '{0}'".format(subjec)).iloc[0].Repo
+#
+#         sourceDF = load_zipped_pickle(join(COMMIT_DFS, repo + '.pickle'))
+#
+#         selectedIds = sourceDF.fix.unique().tolist()
+#         selectedIds = [i for i in selectedIds if i is not None]
+#     if subjec != 'ALL':
+#         selectedIds = [i for i in selectedIds if i.startswith(subjec)]
+#
+#     with concurrent.futures.ProcessPoolExecutor() as executor:
+#         try:
+#             futures = {executor.submit(getLast, bugID ): bugID for bugID in selectedIds }
+#             for future in concurrent.futures.as_completed(futures):
+#                 url = futures[future]
+#                 try:
+#                     data = future.result()
+#
+#                 except Exception as exc:
+#                     logging.error('%r generated an exception: %s' % (url, exc))
+#                     raise
+#                 kwargs = {
+#                     'total': len(futures),
+#                     'unit': 'files',
+#                     'unit_scale': True,
+#                     'leave': False
+#                 }
+#                 # Print out the progress as tasks complete
+#                 for f in tqdm(concurrent.futures.as_completed(futures), **kwargs):
+#                     pass
+#         except Exception as e:
+#             logging.error(e)
+#             executor.shutdown()
+#             raise
+
+
+def caseFix(subjec):
+    cmd = 'git config --global diff.renamelimit 0'
+
+    shellCallTemplate(cmd)
+
+
+
+    logging.info("Marking fixes")
+    subjects = pd.read_csv(join(DATA_PATH, 'subjects.csv'))
+    if subjec != 'ALL':
+        subjects = subjects.query("Subject == '{0}'".format(subjec))
+
+
+
+
+    with concurrent.futures.ProcessPoolExecutor() as executor:
+        try:
+            futures = {
+            executor.submit(markFix, subject, subjects.query("Subject == '{0}'".format(subject)).iloc[0].Repo): subject
+            for subject in subjects.Subject.tolist()}
+            for future in concurrent.futures.as_completed(futures):
+                url = futures[future]
+                try:
+                    data = future.result()
+                    data = data[~data.fix.isna()]
+                    data.fix = data.fix.apply(lambda x: x.strip().upper())
+                    singleFix = data.fix.value_counts().loc[lambda x: x == 1].reset_index(name='count')['index']
+                    singleCommits = data[data.fix.isin(singleFix)]
+                    save_zipped_pickle(singleCommits,join(COMMIT_DFS, subjects.query("Subject == '{0}'".format(url)).iloc[0].Repo + ".pickle"))
+                except Exception as exc:
+                    logging.error('%r generated an exception: %s' % (url, exc))
+                    raise
+                kwargs = {
+                    'total': len(futures),
+                    'unit': 'subject',
+                    'unit_scale': True,
+                    'leave': False
+                }
+                # Print out the progress as tasks complete
+                for f in tqdm(concurrent.futures.as_completed(futures), **kwargs):
+                    pass
+        except Exception as e:
+            # logging.error(e)
+            executor.shutdown()
+            raise
diff --git a/python/fixminer.sh b/python/fixminer.sh
new file mode 100644
index 0000000..5ece4df
--- /dev/null
+++ b/python/fixminer.sh
@@ -0,0 +1,6 @@
+#!/bin/bash
+
+
+source activate redisEnv
+
+PYTHONPATH=$(pwd) python -u main.py -root $(pwd) -job $1
diff --git a/python/getIntroClass.py b/python/getIntroClass.py
new file mode 100644
index 0000000..c7a158b
--- /dev/null
+++ b/python/getIntroClass.py
@@ -0,0 +1,72 @@
+from common.commons import *
+DATA_PATH = os.environ["DATA_PATH"]
+BUGDIR = join(DATA_PATH,'introclass')
+
+introClassFile = join(DATA_PATH,'introClassData.txt')
+
+def get_filepaths(directory):
+
+    file_paths = []  # List which will store all of the full filepaths.\n,
+    exclude = '.git'
+    # Walk the tree.\n,
+    for root, directories, files in os.walk(directory):
+        directories[:] = [d for d in directories if d not in exclude]
+        java = [i for i in files if not (i.endswith('-diff') or i.endswith('.patch'))]
+
+        for filename in java:
+            # Join the two strings in order to form the full filepath.\n,
+            filepath = os.path.join(root, filename)
+            file_paths.append(filepath)  # Add it to the list.\n,
+
+    return file_paths  # Self-explanatory.\n,
+
+def export():
+    if not os.path.exists(join(BUGDIR)):
+        os.mkdir(join(BUGDIR))
+    # bugList = [i.replace(':', '-').replace('manybugs-', 'squareslab/manybugs:') for i in bugList]
+    # exportCore(bugList[0])
+    bugList = []
+    with open(introClassFile, 'r') as file:
+        for line in file.readlines():
+            bugList.append(line.strip())
+    print("bugList length: {}".format(len(bugList)))
+    for b in bugList:
+        exportCore(b)
+def exportCore(bugName):
+
+    bugNameForDocker = bugName.replace(':', '-').replace('introclass-', 'squareslab/introclass:')
+    cmd = 'docker images '+bugNameForDocker+' --format "{{.ID}}"'
+    logging.info(cmd)
+    output, e = shellGitCheckout(cmd)
+    logging.info(output)
+
+    cmd = 'docker create -ti --name dummy '+output.strip()+' bash'
+    logging.info(cmd)
+    output, e = shellGitCheckout(cmd)
+    logging.info(output)
+
+    if not os.path.exists(join(BUGDIR,bugName)):
+        os.makedirs(join(BUGDIR,bugName,))
+
+    cmd = 'docker cp dummy:/experiment/'+ bugName.split(':')[1] + '.c ' + join(BUGDIR,bugName)
+    logging.info(cmd)
+    output, e = shellGitCheckout(cmd)
+    logging.info(output)
+
+    cmd = 'docker cp dummy:/experiment/oracle.c ' + join(BUGDIR, bugName)
+    logging.info(cmd)
+    output, e = shellGitCheckout(cmd)
+    logging.info(output)
+
+    cmd = 'docker rm -fv dummy'
+    logging.info(cmd)
+    output, e = shellGitCheckout(cmd)
+    logging.info(output)
+
+    homework = join(BUGDIR, bugName) + '/' + bugName.split(':')[1] + '.c'
+    patchName = join(BUGDIR, bugName) + '/oracle.c'
+    cmd = 'diff -u ' + homework + ' ' + ' ' + patchName + '  > ' +patchName +'.patch'
+    logging.info(cmd)
+    output, e = shellGitCheckout(cmd)
+    logging.info(output)
+
diff --git a/python/getManybugs.py b/python/getManybugs.py
new file mode 100644
index 0000000..3fdb0ac
--- /dev/null
+++ b/python/getManybugs.py
@@ -0,0 +1,170 @@
+from common.commons import *
+DATA_PATH = os.environ["DATA_PATH"]
+bugList = ['manybugs:gmp:13420-13421','manybugs:gmp:14166-14167','manybugs:libtiff:2005-12-14-6746b87-0d3d51d','manybugs:libtiff:2005-12-21-3b848a7-3edb9cd','manybugs:libtiff:2005-12-27-6f76e76-5dac30f','manybugs:libtiff:2006-02-23-b2ce5d8-207c78a','manybugs:libtiff:2006-02-27-6074705-e6d0c32','manybugs:libtiff:2006-03-03-a72cf60-0a36d7f','manybugs:libtiff:2006-03-03-eec4c06-ee65c74','manybugs:libtiff:2007-07-13-09e8220-f2d989d','manybugs:libtiff:2007-07-19-ce4b7af-7d6e298','manybugs:libtiff:2007-08-24-827b6bc-22da1d6','manybugs:libtiff:2007-11-02-371336d-865f7b2','manybugs:libtiff:2007-11-23-82e378c-cf05a83','manybugs:libtiff:2008-04-15-2e8b2f1-0d27dc0','manybugs:libtiff:2008-09-05-d59e7df-5f42dba','manybugs:libtiff:2008-12-30-362dee5-565eaa2','manybugs:libtiff:2009-02-05-764dbba-2e42d63','manybugs:libtiff:2009-06-30-b44af47-e0b51f3','manybugs:libtiff:2009-08-28-e8a47d4-023b6df','manybugs:libtiff:2009-09-03-6406250-6b6496b','manybugs:libtiff:2010-06-30-1563270-1136bdf','manybugs:libtiff:2010-11-27-eb326f9-eec7ec0','manybugs:libtiff:2010-12-13-96a5fb4-bdba15c','manybugs:lighttpd:1794-1795','manybugs:lighttpd:1806-1807','manybugs:lighttpd:1913-1914','manybugs:lighttpd:1948-1949','manybugs:lighttpd:2225-2226','manybugs:lighttpd:2254-2259','manybugs:lighttpd:2330-2331','manybugs:lighttpd:2661-2662','manybugs:lighttpd:2785-2786','manybugs:php:2011-01-09-7c6310852e-478e5d1dd0','manybugs:php:2011-01-18-95388b7cda-b9b1fb1827','manybugs:php:2011-01-23-bc049ccb62-a6c0a4e474','manybugs:php:2011-01-24-a6c0a4e474-1a8b87d2c5','manybugs:php:2011-01-29-147382033a-5bb0a44e06','manybugs:php:2011-01-30-5bb0a44e06-1e91069eb4','manybugs:php:2011-02-01-01745fa657-1f49902999','manybugs:php:2011-02-01-1f49902999-f2329f1f4b','manybugs:php:2011-02-01-fefe9fc5c7-0927309852','manybugs:php:2011-02-04-793cfe1376-109b8e99e0','manybugs:php:2011-02-05-c50b3d7add-426f31e790','manybugs:php:2011-02-11-f912a2d087-b84967d3e2','manybugs:php:2011-02-14-86efc8e55e-d1d61ce612','manybugs:php:2011-02-16-eb0dd2b8ab-9bbc114b59','manybugs:php:2011-02-21-2a6968e43a-ecb9d8019c','manybugs:php:2011-02-21-b21f62eb2d-2a6968e43a','manybugs:php:2011-02-27-e65d361fde-1d984a7ffd','manybugs:php:2011-03-11-d890ece3fc-6e74d95f34','manybugs:php:2011-03-19-5d0c948296-8deb11c0c3','manybugs:php:2011-03-22-0de2e61cab-991ba13174','manybugs:php:2011-03-23-63673a533f-2adf58cfcf','manybugs:php:2011-03-27-11efb7295e-f7b7b6aa9e','manybugs:php:2011-03-27-2191af9546-b83e243c23','manybugs:php:2011-04-02-70075bc84c-5a8c917c37','manybugs:php:2011-04-06-187eb235fe-2e25ec9eb7','manybugs:php:2011-04-07-d3274b7f20-77ed819430','manybugs:php:2011-04-09-db01e840c2-09b990f499','manybugs:php:2011-04-12-465ffa7fa2-c4a8866abb','manybugs:php:2011-04-19-11941b3fd2-821d7169d9','manybugs:php:2011-04-27-53204a26d2-118695a4ea','manybugs:php:2011-10-15-0a1cc5f01c-05c5c8958e','manybugs:php:2011-10-16-1f78177e2b-d4ae4e79db','manybugs:php:2011-10-31-c4eb5f2387-2e5d5e5ac6','manybugs:php:2011-11-05-7888715e73-ff48763f4b','manybugs:php:2011-11-08-0ac9b9b0ae-cacf363957','manybugs:php:2011-11-08-6a42b41c3d-5063a77128','manybugs:php:2011-11-08-c3e56a152c-3598185a74','manybugs:php:2011-11-11-fcbfbea8d2-c1e510aea8','manybugs:php:2011-11-15-2568672691-13ba2da5f6','manybugs:php:2011-11-19-51a4ae6576-bc810a443d','manybugs:php:2011-11-19-eeba0b5681-d3b20b4058','manybugs:php:2011-11-19-eeba0b5681-f330c8ab4e','manybugs:php:2011-11-22-ecc6c335c5-b548293b99','manybugs:php:2011-11-25-3b1ce022f1-c2ede9a00a','manybugs:php:2011-11-26-7c2946f80e-dc6ecd21ee','manybugs:php:2011-12-04-1e6a82a1cf-dfa08dc325','manybugs:php:2011-12-06-5087b0ee42-ac631dd580','manybugs:php:2012-01-01-7c3177e5ab-e2a2ed348f','manybugs:php:2012-01-01-80dd931d40-7c3177e5ab','manybugs:php:2012-01-16-36df53421e-f32760bd40','manybugs:php:2012-01-17-032d140fd6-877f97cde1','manybugs:php:2012-01-17-e76c1cc03c-ebddf8a975','manybugs:php:2012-01-27-544e36dfff-acaf9c5227','manybugs:php:2012-01-29-d8b312845c-dc27324dd9','manybugs:php:2012-01-30-9de5b6dc7c-4dc8b1ad11','manybugs:php:2012-02-08-ff63c09e6f-6672171672','manybugs:php:2012-02-12-3d898cfa3f-af92365239','manybugs:php:2012-02-25-c1322d2505-cfa9c90b20','manybugs:php:2012-03-06-6237456cae-5e80c05deb','manybugs:php:2012-03-08-0169020e49-cdc512afb3','manybugs:php:2012-03-08-d54e6ce832-23e65a9dcc','manybugs:php:2012-03-10-23e65a9dcc-e6ec1fb166','manybugs:php:2012-03-12-438a30f1e7-7337a901b7','manybugs:php:2012-03-12-7aefbf70a8-efc94f3115','manybugs:php:2012-03-22-3efc9f2f78-2e19cccad7','manybugs:python:69223-69224','manybugs:python:69368-69372','manybugs:python:69470-69474','manybugs:python:69609-69616','manybugs:python:69709-69710','manybugs:python:69740-69743','manybugs:python:69783-69784','manybugs:python:69785-69789','manybugs:python:69831-69833','manybugs:python:69934-69935','manybugs:python:69945-69946','manybugs:python:70019-70023','manybugs:python:70056-70059','manybugs:python:70098-70101','manybugs:python:70120-70124','manybugs:wireshark:35419-35414','manybugs:wireshark:37112-37111','manbugs:wireshark:37122-37123']
+# bugList = ['manybugs:php:2011-01-23-bc049ccb62-a6c0a4e474']
+BUGDIR = join(DATA_PATH,'manybugs')
+
+sosbugs = ['manybugs:gmp:14166-14167', 'manybugs:gzip:2009-08-16-3fe0caeada-39a362ae9d',
+           'manybugs:gzip:2009-10-09-1a085b1446-118a107f2d', 'manybugs:gzip:2010-02-19-3eb6091d69-884ef6d16c',
+           'manybugs:libtiff:2005-12-21-3b848a7-3edb9cd', 'manybugs:libtiff:2006-03-03-a72cf60-0a36d7f',
+           'manybugs:libtiff:2006-03-03-eec4c06-ee65c74', 'manybugs:libtiff:2007-07-13-09e8220-f2d989d',
+           'manybugs:libtiff:2007-11-02-371336d-865f7b2', 'manybugs:libtiff:2009-02-05-764dbba-2e42d63',
+           'manybugs:libtiff:2009-08-28-e8a47d4-023b6df', 'manybugs:libtiff:2010-11-27-eb326f9-eec7ec0',
+           'manybugs:libtiff:2006-02-23-b2ce5d8-207c78a', 'manybugs:lighttpd:2661-2662', 'manybugs:lighttpd:2254-2259',
+           'manybugs:lighttpd:2785-2786', 'manybugs:lighttpd:1948-1949',
+           'manybugs:php:2011-12-10-74343ca506-52c36e60c4', 'manybugs:php:2011-04-02-70075bc84c-5a8c917c37',
+           'manybugs:php:2011-03-25-8138f7de40-3acdca4703', 'manybugs:php:2011-12-04-1e6a82a1cf-dfa08dc325',
+           'manybugs:php:2012-02-08-ff63c09e6f-6672171672', 'manybugs:php:2011-11-19-eeba0b5681-d3b20b4058',
+           'manybugs:php:2011-04-07-77ed819430-efcb9a71cd', 'manybugs:php:2011-02-01-01745fa657-1f49902999',
+           'manybugs:php:2012-03-12-7aefbf70a8-efc94f3115', 'manybugs:php:2011-10-15-0a1cc5f01c-05c5c8958e',
+           'manybugs:php:2011-01-30-5bb0a44e06-1e91069eb4', 'manybugs:php:2011-02-01-fefe9fc5c7-0927309852',
+           'manybugs:php:2011-02-27-e65d361fde-1d984a7ffd', 'manybugs:php:2011-03-19-5d0c948296-8deb11c0c3',
+           'manybugs:php:2011-03-23-63673a533f-2adf58cfcf', 'manybugs:php:2011-04-06-187eb235fe-2e25ec9eb7',
+           'manybugs:php:2011-04-09-db01e840c2-09b990f499', 'manybugs:php:2011-05-17-453c954f8a-daecb2c0f4',
+           'manybugs:php:2011-05-24-b60f6774dc-1056c57fa9', 'manybugs:php:2011-10-16-1f78177e2b-d4ae4e79db',
+           'manybugs:php:2011-10-31-2e5d5e5ac6-b5f15ef561', 'manybugs:php:2011-10-31-c4eb5f2387-2e5d5e5ac6',
+           'manybugs:php:2011-11-01-ceac9dc490-9b0d73af1d', 'manybugs:php:2011-11-11-fcbfbea8d2-c1e510aea8',
+           'manybugs:php:2011-11-15-236120d80e-fb37f3b20d', 'manybugs:php:2011-11-16-55acfdf7bd-3c7a573a2c',
+           'manybugs:php:2011-11-22-ecc6c335c5-b548293b99', 'manybugs:php:2011-11-23-eca88d3064-db0888dfc1',
+           'manybugs:php:2012-01-27-544e36dfff-acaf9c5227', 'manybugs:php:2012-01-30-9de5b6dc7c-4dc8b1ad11',
+           'manybugs:php:2012-02-25-c1322d2505-cfa9c90b20', 'manybugs:php:2012-03-04-60dfd64bf2-34fe62619d',
+           'manybugs:php:2012-03-08-0169020e49-cdc512afb3', 'manybugs:php:2012-03-11-3954743813-d4f05fbffc',
+           'manybugs:php:2012-03-12-438a30f1e7-7337a901b7', 'manybugs:python:69223-69224',
+           'manybugs:python:69368-69372', 'manybugs:python:70098-70101', 'manybugs:python:70056-70059',
+           'manybugs:wireshark:37112-37111', 'manybugs:wireshark:37122-37123', 'manybugs:gmp:13420-13421',
+           'manybugs:gzip:2009-09-26-a1d3d4019d-f17cbd13a1', 'manybugs:lighttpd:1913-1914',
+           'manybugs:php:2011-11-19-51a4ae6576-bc810a443d', 'manybugs:php:2011-03-11-d890ece3fc-6e74d95f34',
+           'manybugs:php:2011-11-19-eeba0b5681-f330c8ab4e', 'manybugs:php:2012-01-01-80dd931d40-7c3177e5ab']
+
+def get_filepaths(directory):
+
+    file_paths = []  # List which will store all of the full filepaths.\n,
+    exclude = '.git'
+    # Walk the tree.\n,
+    for root, directories, files in os.walk(directory):
+        directories[:] = [d for d in directories if d not in exclude]
+        java = [i for i in files if not (i.endswith('-diff') or i.endswith('.patch'))]
+
+        for filename in java:
+            # Join the two strings in order to form the full filepath.\n,
+            filepath = os.path.join(root, filename)
+            file_paths.append(filepath)  # Add it to the list.\n,
+
+    return file_paths  # Self-explanatory.\n,
+
+def export():
+    if not os.path.exists(join(BUGDIR)):
+        os.mkdir(join(BUGDIR))
+
+    cmd = 'bugzoo bug list | grep Yes'
+    o,e = shellGitCheckout(cmd)
+
+    if o =='':
+        with open(join(DATA_PATH,'bugzooList'),mode='r') as b:
+            o = b.read()
+    bugList = []
+    for line in o.split('\n'):
+        if(line.strip() == ''):
+            continue
+        bugList.append(line.split('|')[1].strip())
+    bugList
+    # bugList = [i.replace(':', '-').replace('manybugs-', 'squareslab/manybugs:') for i in bugList]
+    # exportCore(bugList[0])
+    # print("bugList length: {}".format(len(bugList)))
+
+
+
+    for b in [b for b in bugList if b in sosbugs]:
+        # cmd = 'bugzoo bug build ' + b
+        # o,e = shellGitCheckout(cmd)
+        # print(o)
+        # print(e)
+        exportCore(b)
+    # exportCore('manybugs:php:2011-03-27-2191af9546-b83e243c23')
+    # parallelRun(exportCore,bugList)
+def exportCore(bugName):
+
+    try:
+
+
+        bugNameForDocker = bugName.replace(':', '-').replace('manybugs-', 'squareslab/manybugs:')
+        cmd = 'docker images '+bugNameForDocker+' --format "{{.ID}}"'
+        logging.info(cmd)
+        output, e = shellGitCheckout(cmd)
+        logging.info(output)
+        # bugName = bugName.replace('manybugs:','')
+        if not os.path.exists(join(BUGDIR,bugName)):
+            os.makedirs(join(BUGDIR,bugName))
+
+        if os.path.exists(join(BUGDIR, bugName,'diffs')):
+            shutil.rmtree(join(BUGDIR, bugName,'diffs'))
+            # os.makedirs(join(BUGDIR, bugName,'diffs'))
+        if os.path.exists(join(BUGDIR, bugName, 'src')):
+            shutil.rmtree(join(BUGDIR, bugName,'src'))
+            # os.makedirs(join(BUGDIR, bugName, 'src'))
+    #
+        cmd = 'docker create -ti --name dummy '+output.strip()+' bash'
+        logging.info(cmd)
+        output, e = shellGitCheckout(cmd)
+        logging.info(output)
+        cmd = 'docker cp dummy:/experiment/test.sh  '+join(BUGDIR,bugName)
+        logging.info(cmd)
+        output, e = shellGitCheckout(cmd)
+        logging.info(output)
+
+
+
+        cmd = 'docker cp dummy:/experiment/src '+join(BUGDIR,bugName)
+        logging.info(cmd)
+        output, e = shellGitCheckout(cmd)
+        logging.info(output)
+
+        cmd = 'docker cp dummy:/experiment/diffs '+join(BUGDIR,bugName)
+        logging.info(cmd)
+        output, e = shellGitCheckout(cmd)
+        logging.info(output)
+
+        cmd = 'docker rm -fv dummy'
+        logging.info(cmd)
+        output, e = shellGitCheckout(cmd)
+        logging.info(output)
+        name = bugName.split(':')[1]
+        # if name == 'libtiff' or name == 'php':
+        #     preId = bugName.split('-')[3]
+        #     postId = bugName.split('-')[4]
+        # else:
+        #     preId = bugName.split(':')[2].split('-')[0]
+        #     postId = bugName.split(':')[2].split('-')[1]
+        preId,postId = bugName.split(':')[-1].split('-')[-2:]
+
+        res = get_filepaths(join(BUGDIR, bugName,'diffs'))
+        res = [i for i in res if not i.endswith('.DS_Store')]
+        fullName0 = res[0].split('-')[-1]
+        fullName1 = res[1].split('-')[-1]
+        if preId != fullName0 and preId != fullName1:
+            if fullName0.startswith(preId):
+                preId = fullName0
+                postId =fullName1
+            else:
+                preId = fullName1
+                postId = fullName0
+        if len(res)!=2:
+            patchNames = list(set([re.sub('c-[a-z0-9]+', 'c', i.split(join(BUGDIR, bugName, 'diffs'))[-1]) for i in res]))
+            for pn in patchNames:
+                pn = join(BUGDIR, bugName, 'diffs') + pn
+                results = [i for i in res if i.startswith(pn)]
+                cmd = 'diff -u ' + pn + '-' + preId + ' ' + pn + '-' + postId + '  > ' + pn + '.patch'
+                logging.info(cmd)
+                output, e = shellGitCheckout(cmd)
+                logging.info(output)
+        else:
+            patchName = list(set([re.sub('c-[a-z0-9]+', 'c', i.split(join(BUGDIR, bugName, 'diffs'))[-1]) for i in res]))[0]
+            patchName = join(BUGDIR, bugName, 'diffs') + patchName
+            cmd = 'diff -u ' + patchName + '-' +preId + ' ' + ' ' + patchName + '-' + postId + '  > ' +patchName +'.patch'
+            logging.info(cmd)
+            output, e = shellGitCheckout(cmd)
+            logging.info(output)
+    except Exception as e:
+        logging.error(bugName)
+        logging.error(e)
+
diff --git a/python/javaDS.py b/python/javaDS.py
new file mode 100644
index 0000000..89175d9
--- /dev/null
+++ b/python/javaDS.py
@@ -0,0 +1,64 @@
+def createDS(subject):
+    # # if job == 'clone':
+    from commitCollector import *
+
+    caseClone(subject)
+    # # elif job == 'collect':
+    from commitCollector import *
+
+    caseCollect(subject)
+    # # elif job == 'fix':
+    from filterBugFixingCommits import caseFix
+
+    caseFix(subject)
+    #
+    # # elif job =='brDownload':
+    from bugReportDownloader import caseBRDownload
+
+    caseBRDownload(subject)
+    # # elif job =='brParser':
+    from bugReportParser import step1
+
+    step1(subject)
+
+    # elif job =='dataset':
+
+    if not isfile(join(DATA_PATH, 'singleBR.pickle')):
+
+        brs = load_zipped_pickle(join(DATA_PATH, subject + "bugReportsComplete.pickle"))
+
+        subjects = pd.read_csv(join(DATA_PATH, 'subjects.csv'))
+
+
+        def getCommit(x):
+            bid, project = x
+
+            subjects = pd.read_csv(join(DATA_PATH, 'subjects.csv'))
+            repo = subjects.query("Subject == '{0}'".format(project)).Repo.tolist()[0]
+            commits = load_zipped_pickle(join(DATA_PATH, COMMIT_DFS, repo + '.pickle'))
+            correspondingCommit = commits.query("fix =='{0}'".format(bid)).commit.tolist()
+            if len(correspondingCommit) == 1:
+                return [bid, correspondingCommit[0], project]
+            else:
+                return None
+                print('error')
+
+
+        wl = brs[['bid', 'project']].values.tolist()
+        dataL = parallelRunMerge(getCommit, wl)
+
+        commits = pd.DataFrame(
+            columns=['bid', 'commit', 'project'],
+            data=list(filter(None.__ne__, dataL)))
+
+        save_zipped_pickle(commits, join(DATA_PATH, 'singleBR.pickle'))
+    else:
+        commits = load_zipped_pickle(join(DATA_PATH, 'singleBR.pickle'))
+        subjects = pd.read_csv(join(DATA_PATH, 'subjects.csv'))
+    logging.info('done matching commits')
+    commits['repo'] = commits.project.apply(lambda x: subjects.query("Subject == '{0}'".format(x)).Repo.tolist()[0])
+
+    workList = commits[['commit', 'repo']].values.tolist()
+    from dataset import prepareFiles
+
+    parallelRun(prepareFiles, workList)
\ No newline at end of file
diff --git a/python/linuxDataset.py b/python/linuxDataset.py
new file mode 100644
index 0000000..6270b37
--- /dev/null
+++ b/python/linuxDataset.py
@@ -0,0 +1,253 @@
+from common.commons import *
+DATA_PATH = os.environ["DATA_PATH"]
+COMMIT_DFS = os.environ["COMMIT_DFS"]
+DATASET_PATH = '/Users/anil.koyuncu/projects/datasets'
+repo = join(DATASET_PATH,'linux')
+
+def filetype_fileter(filename):
+    # return filename.endswith(u'.java') and not bool(re.search('test.*\/', filename))
+    return filename.endswith(u'.c') or filename.endswith(u'.h')
+
+
+
+def checkoutFiles(sha,shaOld, filePath,type, repo=None):
+    try:
+        # folderDiff = join(DATA_PATH, 'gumInput',repoName, 'DiffEntries')
+        folderDiff = join(DATA_PATH, type, 'DiffEntries')
+        folderPrev = join(DATA_PATH, type, 'prevFiles')
+        folderRev = join(DATA_PATH, type, 'revFiles')
+        if not os.path.exists(folderDiff):
+            os.mkdir(folderDiff)
+
+        if not os.path.exists(folderPrev):
+            os.mkdir(folderPrev)
+
+        if not os.path.exists(folderRev):
+            os.mkdir(folderRev)
+
+        # if repo is None:
+        #     repo = join(REPO_PATH,repoName)
+
+
+        savePath = filePath.replace('/','#')
+        if not isfile(folderDiff + '/' + sha + '_' + shaOld + '_' + savePath + '.txt'):
+
+            cmd = 'git -C ' + repo + ' diff -U ' + shaOld + ':' + filePath + '..' + sha + ':' + filePath  # + '> ' + folderDiff + '/' + sha + '_' + shaOld + '_' + savePath.replace('.java','.txt')
+
+            output,errors = shellGitCheckout(cmd,'latin1')
+            if errors:
+                # print(errors)
+                raise FileNotFoundError
+
+            regex = r"@@\s\-\d+,*\d*\s\+\d+,*\d*\s@@ ?(.*\n)*"
+            match = re.search(regex, output)
+            if not match:
+                return
+                # print()
+            not_matched, matched = output[:match.start()], match.group()
+            numberOfHunks = re.findall('@@\s\-\d+,*\d*\s\+\d+,*\d*\s@@', matched)
+            if len(numberOfHunks) == 0:
+                return
+            diffFile = shaOld + '\n' + matched.replace(' @@ ', ' @@\n')
+
+            with open(folderDiff + '/' + sha + '_' + shaOld + '_' + savePath + '.txt',
+                      'w') as writeFile:
+                writeFile.writelines(diffFile)
+
+
+
+            cmd = 'git -C ' + repo + ' show ' + sha + ':' + filePath + '> ' + folderRev + '/' + sha + '_' + shaOld + '_' +savePath
+
+            if errors:
+                # print(errors)
+                raise FileNotFoundError
+            o,errors= shellGitCheckout(cmd,'latin1')
+            cmd = 'git -C ' + repo + ' show ' + shaOld + ':' + filePath + '> ' + folderPrev + '/' + 'prev_'+sha + '_' + shaOld + '_' +savePath
+            if errors:
+                # print(errors)
+                raise FileNotFoundError
+
+            o,errors = shellGitCheckout(cmd,'latin1')
+            if errors:
+                # print(errors)
+                raise FileNotFoundError
+
+    except FileNotFoundError as fnfe:
+        if isfile(folderRev + '/' + sha + '_' + shaOld + '_' +savePath):
+            os.remove(folderRev + '/' + sha + '_' + shaOld + '_' +savePath)
+        if isfile(folderPrev + '/' + 'prev_'+sha + '_' + shaOld + '_' +savePath):
+            os.remove(folderPrev + '/' + 'prev_'+sha + '_' + shaOld + '_' +savePath)
+        if isfile(folderDiff + '/' + sha + '_' + shaOld + '_' + savePath.replace('.java','.txt')):
+            os.remove(folderDiff + '/' + sha + '_' + shaOld + '_' + savePath.replace('.java','.txt'))
+        # print(fnfe)
+        # raise Exception(fnfe)
+    except Exception as e:
+        # print(e)
+        raise Exception(e)
+
+
+def prepareFiles(t):
+    try:
+        sha,files = t
+
+        shaOld = sha + '^'
+
+        # repo = join(REPO_PATH,repoName)
+        gumInputRepo = join(DATA_PATH, 'gumInputLinux')
+        if not os.path.exists(join(gumInputRepo)):
+            os.makedirs(gumInputRepo)
+
+        # cmd = 'git -C ' + repo + ' diff --name-only ' + shaOld + '..'+sha
+        #
+        # output, errors = shellGitCheckout(cmd, 'latin1')
+        # files = output.strip().split('\n')
+
+        # if len(nonJava) > 0:
+        #     logging.warning('Skipping commit %s',sha)
+        #     return
+        # if len(files) != 1:
+        #     return
+
+        # nonTest = [f for f in files if not re.search('test', f, re.I) and f.endswith('.c') or f.endswith(u'.h')]
+        #
+        # if len(nonTest) > 1:
+        #     return
+
+        nonTest = []
+        for k,v in files.items():
+            if v == 'M':
+                if k.endswith('.c') or k.endswith(u'.h'):
+                   nonTest.append(k)
+        # nonTest = [f for f in files.keys() if f.endswith('.c') or f.endswith(u'.h')]
+
+        cmd = 'git -C ' + repo + ' rev-parse --short=6 ' + shaOld
+
+        output, errors = shellGitCheckout(cmd, 'latin1')
+        shaOld = output.strip()
+
+        cmd = 'git -C ' + repo + ' rev-parse --short=6 ' + sha
+        output, errors = shellGitCheckout(cmd, 'latin1')
+        sha = output.strip()
+
+        if isinstance(nonTest, list):
+            for file in nonTest:
+                checkoutFiles(sha,shaOld,  file,'gumInputLinux',repo)
+
+
+
+    except Exception as e:
+        print(e)
+
+
+def checkCommitLog(x):
+
+    cmd= 'git -C ' + repo + ' show ' + x + " --pretty=\"format:\" --name-status -M100%"
+
+    out, err = shellGitCheckout(cmd, enc='latin1')
+    log = {}
+    lines = out.strip().split('\n')
+    for line in lines:
+        fname = line[2:].strip()
+        ftype = line[:1]
+        log[fname] = ftype
+    log
+    return log
+
+def getCommitLog(x):
+
+    # commit, repo = x
+
+    cmd = 'git -C ' + repo + '/ ' + " show --pretty=format:'%B' --no-patch " + x
+
+    output = shellCallTemplate(cmd, 'latin-1')
+
+    matches = re.finditer('Fixes: [0-9a-f]{6,40}', output)
+    match = list(matches)
+    fixes = []
+    if len(match) >= 1:
+        for m in match:
+            fixes.append(m.group())
+    #     return match[0].group()
+
+    matches = re.finditer('http[s]?:\/\/.*show_bug\.cgi\?id=[0-9]*',output)
+    match = list(matches)
+    links = []
+    if len(match) >= 1:
+        for m in match:
+            links.append(m.group())
+
+    df = pd.DataFrame(data=[[links,fixes, output,x]], columns=['links','fixes','log','commit'])
+    # df = df.T
+    # df.columns = ['log', 'commit']
+
+    return df
+
+
+
+    output
+
+def collectBugFixPatches():
+    commits = getAllCommits()
+    # remove commits that are only deleting or adding files
+    commits = commits[commits.files.apply(lambda x: np.any([i == 'M' for i in x.values()]))]
+    # keep only commits that are changing c files (.c)
+    commits = commits[commits.files.apply(lambda x: np.all([i.endswith('.c') for i in x.keys()]))]
+    #not a revert commit
+    # commits = commits[~commits.log.apply(lambda x: x.startswith('Revert'))]
+    # commits = commits[commits.files.apply(lambda x: len(x) == 1)]
+    # commits['cocci'] = commits.log.apply(lambda x: True if re.search('cocci|coccinelle', x) else False)
+    # coccis = commits[commits.cocci].commit.values.tolist()
+    fixes = commits[commits.fixes.str.len()!=0].commit.values.tolist()
+    # links = commits[commits.links.str.len()!=0].commit.values.tolist()
+
+    # bugs = set(fixes).union(links).union(coccis)
+    # bugs = set(fixes).union(coccis)
+    bugs = set(fixes)
+    a = commits[commits.commit.isin(bugs)]
+    # for s in a.commit.values.tolist():
+    print(len(a))
+    parallelRun(prepareFiles,a[['commit','files']].values.tolist())
+        # prepareFiles(s)
+
+
+def markBugFixingPatches(commits):
+    # from pandarallel import pandarallel
+    #
+    # pandarallel.initialize()
+    # commits['files'] = commits.commit.parallel_apply(checkCommitLog)
+    # commits
+
+    # commits['isC'] = commits.files.apply(lambda x:np.any([i.endswith('.c') or i.endswith('.h') for i in x.keys() ]))
+
+    commits = commits[commits.isC == True]
+
+    # commits.commit.parallel_apply(getCommitLog)
+    f = parallelRunMergeNew(getCommitLog, commits['commit'].values.tolist())
+
+    res = pd.merge(commits, f, on=['commit'])
+
+    save_zipped_pickle(res, join(COMMIT_DFS, 'linuxFix' + ".pickle"))
+
+
+def getAllCommits():
+    if isfile(join(COMMIT_DFS,'linuxFix.pickle')):
+        return load_zipped_pickle(join(COMMIT_DFS,'linuxFix.pickle'))
+    else:
+
+        if isfile(join(COMMIT_DFS,'linux.pickle')):
+            commits =  load_zipped_pickle(join(COMMIT_DFS,'linux.pickle'))
+        else:
+            if not os.path.exists(COMMIT_DFS):
+                os.mkdir(COMMIT_DFS)
+
+
+            cmd = 'git -C ' + repo + " log --no-merges --pretty=format:'{\"commit\":\"%H\",\"commitDate\":\"%ci\",\"title\":\"%f\",\"committer\":\"%ce\"}' > " + join(DATA_PATH,'linux' + '.commits')
+            output = shellCallTemplate(cmd, enc='latin1')
+
+            from commitCollector import makeDF
+            rDF = makeDF(join(DATA_PATH,'linux' + '.commits'))
+            save_zipped_pickle(rDF, join(COMMIT_DFS, 'linux' + ".pickle"))
+            return rDF
+        markBugFixingPatches(commits)
+
+
diff --git a/python/main.py b/python/main.py
new file mode 100644
index 0000000..77eb4d5
--- /dev/null
+++ b/python/main.py
@@ -0,0 +1,235 @@
+from common.commons import *
+
+
+
+
+
+if __name__ == '__main__':
+
+
+    try:
+        args = getRun()
+        setLogg()
+
+
+        setEnv(args)
+
+        job = args.job
+        job = 'indexClusters'
+        ROOT_DIR = os.environ["ROOT_DIR"]
+        REPO_PATH = os.environ["REPO_PATH"]
+        CODE_PATH = os.environ["CODE_PATH"]
+        DATA_PATH = os.environ["DATA_PATH"]
+        COMMIT_DFS = os.environ["COMMIT_DFS"]
+        BUG_POINT = os.environ["BUG_POINT"]
+        COMMIT_FOLDER = os.environ["COMMIT_FOLDER"]
+        FEATURE_DIR = os.environ["FEATURE_DIR"]
+        DATASET_DIR = os.environ["DATASET_DIR"]
+        PROJECT_TYPE = os.environ["PROJECT_TYPE"]
+        jdk8 = os.environ["JDK8"]
+        pd.options.mode.chained_assignment = None
+
+
+        subject = 'ALL'
+        rootType = 'if'
+
+        print(job)
+
+
+        if job == 'dataset':
+            from javaDS import createDS
+            createDS(subject)
+        elif job == 'linuxDS':
+            from linuxDataset import collectBugFixPatches
+            collectBugFixPatches()
+        elif job =='otherDS':
+            from otherDatasets import core
+            core()
+        elif job =='richEditScript':
+            cmd = "JAVA_HOME='" + jdk8 + "' java -jar " + join(DATA_PATH, 'FixPatternMiner-1.0.1.jar') + " " + join(DATA_PATH, 'app.properties') + " RICHEDITSCRIPT " + 'L1'
+            output = shellCallTemplate(cmd)
+            logging.info(output)
+
+        elif job =='loadRES':
+            cmd = "JAVA_HOME='" + jdk8 + "' java -jar " + join(DATA_PATH, 'FixPatternMiner-1.0.1.jar') + " " + join(DATA_PATH, 'app.properties') + " LOAD " + rootType
+            output = shellCallTemplate(cmd)
+            logging.info(output)
+
+        elif job =='shapeSI':
+            from pairs import shapePairs
+            matches = shapePairs()
+
+            from pairs import createPairs
+            createPairs(matches)
+
+            from pairs import importShape
+            importShape()
+
+        elif job =='compareShapes':
+             # cmd = "mvn exec:java -f '/data/fixminer_source/' -Dexec.mainClass='edu.lu.uni.serval.fixminer.akka.compare.CompareTrees' -Dexec.args='"+ " shape " + join(DATA_PATH,"redis") +" ALLdumps-gumInput.rdb " + "clusterl0-gumInputALL.rdb /data/fixminer-core/python/data/richEditScript'"
+            cmd = "JAVA_HOME='" + jdk8 + "' java  -jar " + join(DATA_PATH, 'FixPatternMiner-1.0.1.jar') + " " + join(DATA_PATH, 'app.properties') + " COMPARE " + 'L1'
+            output = shellCallTemplate(cmd)
+            logging.info(output)
+
+        elif job == 'clusterAdditional':
+            from addNewData import cluster
+            cluster()
+
+        elif job == 'cluster':
+            from abstractPatch import cluster
+
+            dbDir = join(DATA_PATH, 'redis')
+            startDB(dbDir, "6399", PROJECT_TYPE)
+            cluster(join(DATA_PATH,'shapes'),join(DATA_PATH, 'pairs'),'shapes',rootType)
+
+        elif job =='actionSI':
+            from pairs import actionPairs
+            actionPairs(rootType)
+
+        # elif job =='importActionPairs':
+            from pairs import importAction
+            importAction(rootType)
+
+        elif job =='compareActions':
+            # cmd = "JAVA_HOME='"+jdk8+"' java -Xmx8096m -Djava.util.concurrent.ForkJoinPool.common.parallelism=64 -jar "+  join(DATA_PATH,'CompareTrees.jar') + " action " + join(DATA_PATH,"redis") +" ALLdumps-gumInput.rdb " + "clusterl1-gumInputALL.rdb"
+
+            cmd = "JAVA_HOME='" + jdk8 + "' java -jar " + join(DATA_PATH, 'FixPatternMiner-1.0.1.jar') + " " + join(DATA_PATH, 'app.properties') + " COMPARE " + 'L2'
+            output = shellCallTemplate(cmd)
+            logging.info(output)
+
+        elif job == 'clusterActions':
+            from abstractPatch import cluster
+
+            dbDir = join(DATA_PATH, 'redis')
+            startDB(dbDir, "6399", PROJECT_TYPE)
+            cluster( join(DATA_PATH, 'actions'),join(DATA_PATH, 'pairsAction'),'actions',rootType)
+
+        elif job == 'tokenSI':
+            from pairs import tokenPairs
+            tokenPairs()
+            from pairs import importToken
+            importToken()
+
+        elif job == 'compareTokens':
+            # cmd = "JAVA_HOME='"+jdk8+"' java -jar "+  join(DATA_PATH,'CompareTrees.jar') + " token " + join(DATA_PATH,"redis") +" ALLdumps-gumInput.rdb " + "clusterl2-gumInputALL.rdb"
+            cmd = "JAVA_HOME='" + jdk8 + "' java -jar " + join(DATA_PATH, 'FixPatternMiner-1.0.1.jar') + " " + join(DATA_PATH, 'app.properties') + " COMPARE " + 'L3'
+            output = shellCallTemplate(cmd)
+            logging.info(output)
+
+        elif job == 'clusterTokens':
+            from abstractPatch import cluster
+
+            dbDir = join(DATA_PATH, 'redis')
+            startDB(dbDir, "6399", PROJECT_TYPE)
+            startDB(dbDir, "6380", "clusterl2-gumInputALL.rdb")
+            cluster(join(DATA_PATH, 'tokens'), join(DATA_PATH, 'pairsToken'),'tokens')
+            stopDB(dbDir, "6380", "clusterl2-gumInputALL.rdb")
+
+        elif job == 'additional':
+            from addNewData import core
+            core()
+            # from addNewData import checkWrongMembers
+            # checkWrongMembers()
+
+        elif job == 'codeflaws':
+            from otherDatasets import codeflaws
+            codeflaws()
+
+
+        elif job =='indexClusters':
+            # from sprinferIndex import runSpinfer
+            # runSpinfer()
+            #
+            # from sprinferIndex import test
+            # test()
+            # from sprinferIndex import divideCoccis
+            # divideCoccis()
+            # from sprinferIndex import removeDuplicates
+            # removeDuplicates()
+
+
+            from patchManyBugs import patchCore
+            patchCore()
+            # from patchManyBugs import patched
+            # patched()
+            from patchManyBugs import exportSosPatches
+            exportSosPatches()
+            from validate_manybugs import validate
+
+            validate()
+
+        elif job =='patternOperations':
+            from sprinferIndex import patternOperations
+            patternOperations()
+        elif job == 'patchManyBugs':
+            from patchManyBugs import buildAll
+            buildAll()
+
+            # from patchManyBugs import patchCore
+            # patchCore()
+            # # from patch_validate import patch_validate_mine
+            # # patch_validate_mine()
+            # from patchManyBugs import patched
+            # patched()
+            # from patchManyBugs import exportSosPatches
+            # exportSosPatches()
+
+        elif job =='patchIntro':
+            from sprinferIndex import patchCoreIntro
+            patchCoreIntro()
+            # from sprinferIndex import patched
+            # patched()
+
+        elif job =='validateIntro':
+            # from patch_validate_introClass2 import patch_validate
+            # patch_validate()
+            from test_patched_file import patch_validate
+            patch_validate()
+        elif job =='checkCorrectIntro':
+            from test_patched_file import checkCorrect
+            checkCorrect()
+        elif job == 'manybugs':
+            from getManybugs import export
+            export()
+
+        elif job == 'validateMany':
+            from patch_validate import patch_validate
+            patch_validate()
+
+        elif job == 'introclass':
+            from getIntroClass import export
+            export()
+
+        elif job =='stats':
+            from stats import statsNormal
+            statsNormal(True)
+
+
+        elif job == 'datasetDefects4J':
+            from defects4JDataset import core
+            core()
+
+        elif job =='bug':
+            from bugstats import bStats
+            bStats()
+        elif job == 'defects4j':
+            from stats import defects4jStats
+            defects4jStats()
+        elif job == 'exportPatterns':
+            from stats import exportAbstractPatterns
+            exportAbstractPatterns()
+        elif job =='export':
+            patternPath = join(DATA_PATH,'actions','ExpressionStatement','3','0','0')
+            patterns = listdir(patternPath)
+            for pattern in patterns:
+                repo = pattern.split('_')[0]
+                file = pattern.replace(repo+'_','')
+                print(file)
+                filename = file.rsplit('_',1)[0]
+                print(join(DATA_PATH,'gumInput',repo,'DiffEntries',filename))
+                break
+
+        else:
+            logging.error('Unknown job %s',job)
+    except Exception as e:
+        logging.error(e)
diff --git a/python/mapping.csv b/python/mapping.csv
new file mode 100644
index 0000000..c4c43c6
--- /dev/null
+++ b/python/mapping.csv
@@ -0,0 +1,395 @@
+commons-math eda09ddbf0722f2a381937714c684669869641dd 1
+commons-math 0b10c69d0e684d4e6585183c9d67c8b00ce0abe0 2
+commons-math 04e9b9ff0b35a20dfdbaf57a49b0981b4d3a715e 3
+commons-math 94082227b21dddc8a9fae78ace5de379889295f2 4
+commons-math 9b8f396da2cb7fa552bfed3b35505f4994f02ceb 5
+commons-math 089aaa8a9ea362245a8e1060c22cd0c1ee167e9d 6
+commons-math 2c0b62235cc52f4e4991c04aa40d27caaa999359 7
+commons-math 1b6d8693035b7b5fff0cffa935efd9763a38a547 8
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diff --git a/python/mp0360.uni.lux.config.yml b/python/mp0360.uni.lux.config.yml
new file mode 100644
index 0000000..13b6da7
--- /dev/null
+++ b/python/mp0360.uni.lux.config.yml
@@ -0,0 +1,20 @@
+java:
+    8home:  /Library/Java/JavaVirtualMachines/jdk1.8.0_181.jdk/Contents/Home
+spinfer:
+    home:   /Users/anil.koyuncu/projects/fixminer/spinfer/spinfer.native
+    #home:   /Users/anil.koyuncu/projects/spinfer/spinfer.native
+dataset:
+#    home:   /Users/anil.koyuncu/projects/test/fixminer-core/python/data/gumInputLinux/
+    home:   /Users/anil.koyuncu/projects/fixminer/fixminer-data/patches/
+#    home:   /data/fixminer-core/python/data/gumInputLinux/
+    repo:   /Users/anil.koyuncu/projects/datasets
+
+coccinelle:
+    home:   /Users/anil.koyuncu/projects/fixminer/spinfer/statics
+    #home:   /Users/anil.koyuncu/projects/spinfer/statics
+
+
+fixminer:
+#    datapath: /Users/anil.koyuncu/projects/test/fixminer-core/python/data/
+    datapath: /Users/anil.koyuncu/projects/fixminer/fixminer-data
+#    datapath: /data/fixminer-core/python/data/
diff --git a/python/otherDatasets.py b/python/otherDatasets.py
new file mode 100644
index 0000000..37219d0
--- /dev/null
+++ b/python/otherDatasets.py
@@ -0,0 +1,313 @@
+from common.commons import *
+DATA_PATH = os.environ["DATA_PATH"]
+COMMIT_DFS = os.environ["COMMIT_DFS"]
+# DATASET_PATH = '/Users/anilkoyuncu/projects/datasets'
+DATASET_PATH = os.environ["REPO_PATH"]
+DATASET = os.environ["dataset"]
+ROOT = os.environ["ROOT_DIR"]
+
+def filetype_fileter(filename):
+    # return filename.endswith(u'.java') and not bool(re.search('test.*\/', filename))
+    return filename.endswith(u'.c') or filename.endswith(u'.h')
+
+
+
+def checkoutFiles(sha,shaOld, filePath,type, repo=None):
+    try:
+        # folderDiff = join(DATA_PATH, 'gumInput',repoName, 'DiffEntries')
+        folderDiff = join(type, 'DiffEntries')
+        folderPrev = join(type, 'prevFiles')
+        folderRev = join( type, 'revFiles')
+        if not os.path.exists(folderDiff):
+            os.mkdir(folderDiff)
+
+        if not os.path.exists(folderPrev):
+            os.mkdir(folderPrev)
+
+        if not os.path.exists(folderRev):
+            os.mkdir(folderRev)
+
+        # if repo is None:
+        #     repo = join(REPO_PATH,repoName)
+
+
+        savePath = filePath.replace('/','#')
+
+        if not isfile(folderDiff + '/' + sha + '_' + shaOld + '_' + savePath + '.txt'):
+
+            cmd = 'git -C ' + repo + ' diff -U ' + shaOld + ':' + filePath + '..' + sha + ':' + filePath  # + '> ' + folderDiff + '/' + sha + '_' + shaOld + '_' + savePath.replace('.java','.txt')
+
+            output,errors = shellGitCheckout(cmd,enc='latin1')
+            if errors:
+                # print(errors)
+                raise FileNotFoundError
+
+            regex = r"@@\s\-\d+,*\d*\s\+\d+,*\d*\s@@ ?(.*\n)*"
+            match = re.search(regex, output)
+            if not match:
+                return
+                # print()
+            not_matched, matched = output[:match.start()], match.group()
+            numberOfHunks = re.findall('@@\s\-\d+,*\d*\s\+\d+,*\d*\s@@', matched)
+            if len(numberOfHunks) == 0:
+                return
+            diffFile = shaOld + '\n' + matched.replace(' @@ ', ' @@\n')
+
+            with open(folderDiff + '/' + sha + '_' + shaOld + '_' + savePath + '.txt',
+                      'w') as writeFile:
+                writeFile.writelines(diffFile)
+
+
+
+            cmd = 'git -C ' + repo + ' show ' + sha + ':' + filePath + '> ' + folderRev + '/' + sha + '_' + shaOld + '_' +savePath
+
+            if errors:
+                # print(errors)
+                raise FileNotFoundError
+            o,errors= shellGitCheckout(cmd,enc='latin1')
+            cmd = 'git -C ' + repo + ' show ' + shaOld + ':' + filePath + '> ' + folderPrev + '/' + 'prev_'+sha + '_' + shaOld + '_' +savePath
+            if errors:
+                # print(errors)
+                raise FileNotFoundError
+
+            o,errors = shellGitCheckout(cmd,enc='latin1')
+            if errors:
+                # print(errors)
+                raise FileNotFoundError
+
+    except FileNotFoundError as fnfe:
+        if isfile(folderRev + '/' + sha + '_' + shaOld + '_' +savePath):
+            os.remove(folderRev + '/' + sha + '_' + shaOld + '_' +savePath)
+        if isfile(folderPrev + '/' + 'prev_'+sha + '_' + shaOld + '_' +savePath):
+            os.remove(folderPrev + '/' + 'prev_'+sha + '_' + shaOld + '_' +savePath)
+        if isfile(folderDiff + '/' + sha + '_' + shaOld + '_' + savePath.replace('.java','.txt')):
+            os.remove(folderDiff + '/' + sha + '_' + shaOld + '_' + savePath.replace('.java','.txt'))
+        # print(fnfe)
+        # raise Exception(fnfe)
+    except Exception as e:
+        # print(e)
+        raise Exception(e)
+
+
+def prepareFiles(t,dsName):
+    try:
+        sha,files = t
+
+        shaOld = sha + '^'
+        # repo = '/Users/anil.koyuncu/projects/linux'
+        # repo = join(REPO_PATH,repoName)
+        gumInputRepo = join(DATASET,dsName)
+        if not os.path.exists(join(gumInputRepo)):
+            os.makedirs(gumInputRepo)
+
+        # cmd = 'git -C ' + repo + ' diff --name-only ' + shaOld + '..'+sha
+        #
+        # output, errors = shellGitCheckout(cmd, 'latin1')
+        # files = output.strip().split('\n')
+
+        # if len(nonJava) > 0:
+        #     logging.warning('Skipping commit %s',sha)
+        #     return
+        # if len(files) != 1:
+        #     return
+
+        # nonTest = [f for f in files if not re.search('test', f, re.I) and f.endswith('.c') or f.endswith(u'.h')]
+        #
+        # if len(nonTest) > 1:
+        #     return
+
+        nonTest = []
+        for k,v in files.items():
+            if v == 'M':
+                if k.endswith('.c') or k.endswith(u'.h'):
+                   nonTest.append(k)
+        # nonTest = [f for f in files.keys() if f.endswith('.c') or f.endswith(u'.h')]
+
+        cmd = 'git -C ' + join(DATASET_PATH,dsName) + ' rev-parse --short=6 ' + shaOld
+
+        output, errors = shellGitCheckout(cmd, enc='latin1')
+        shaOld = output.strip()
+
+        cmd = 'git -C ' + join(DATASET_PATH,dsName) + ' rev-parse --short=6 ' + sha
+        output, errors = shellGitCheckout(cmd, enc='latin1')
+        sha = output.strip()
+
+        if isinstance(nonTest, list):
+            for file in nonTest:
+                checkoutFiles(sha,shaOld,  file,gumInputRepo,join(DATASET_PATH,dsName))
+
+
+
+    except Exception as e:
+        print(e)
+
+
+def checkCommitLog(x,dsName):
+    # repo = '/Users/anil.koyuncu/projects/linux'
+    cmd= 'git -C ' + join(DATASET_PATH,dsName) + ' show ' + x + " --pretty=\"format:\" --name-status -M100%"
+
+    out, err = shellGitCheckout(cmd, enc='latin1')
+    log = {}
+    lines = out.strip().split('\n')
+    for line in lines:
+        fname = line[2:].strip()
+        ftype = line[:1]
+        log[fname] = ftype
+    log
+    df = pd.DataFrame(data=[[log,  x]], columns=['files', 'commit'])
+    return df
+
+def getCommitLog(x,dsName):
+    # repo = '/Users/anil.koyuncu/projects/linux'
+    # commit, repo = x
+
+    cmd = 'git -C ' + join(DATASET_PATH,dsName) + '/ ' + " show --pretty=format:'%B' --no-patch " + x
+
+    output = shellCallTemplate(cmd, 'latin-1')
+
+    # matches = re.finditer(r"\bfix[a-zA-Z]*", output,re.I)
+    matches = re.finditer(r"\bfix[a-zA-Z]*|\bbug[a-zA-Z]*", output,re.I)
+    match = list(matches)
+    fixes = []
+    if len(match) >= 1:
+        for m in match:
+            fixes.append(m.group())
+    #     return match[0].group()
+
+    # matches = re.finditer('http[s]?:\/\/.*show_bug\.cgi\?id=[0-9]*',output)
+    # match = list(matches)
+    # links = []
+    # if len(match) >= 1:
+    #     for m in match:
+    #         links.append(m.group())
+
+    df = pd.DataFrame(data=[[fixes, output,x]], columns=['fixes','log','commit'])
+    # df = df.T
+    # df.columns = ['log', 'commit']
+
+    return df
+
+
+
+    output
+
+def collectBugFixPatches(dsName):
+    commits = getAllCommits(dsName)
+    # remove commits that are only deleting or adding files
+    commits = commits[commits.files.apply(lambda x: np.any([i == 'M' for i in x.values()]))]
+    # keep only commits that are changing c files (.c)
+    commits = commits[commits.files.apply(lambda x: np.all([i.endswith('.c') for i in x.keys()]))]
+    #not a revert commit
+    # commits = commits[~commits.log.apply(lambda x: x.startswith('Revert'))]
+    # commits = commits[commits.files.apply(lambda x: len(x) == 1)]
+    # commits['cocci'] = commits.log.apply(lambda x: True if re.search('cocci|coccinelle', x) else False)
+    # coccis = commits[commits.cocci].commit.values.tolist()
+    fixes = commits[commits.fixes.str.len()!=0].commit.values.tolist()
+    # links = commits[commits.links.str.len()!=0].commit.values.tolist()
+
+    # bugs = set(fixes).union(links).union(coccis)
+    # bugs = set(fixes)#.union(coccis)
+    commits = commits[commits.commit.isin(fixes)]
+    print(len(commits))
+    # for s in a.commit.values.tolist():
+
+    parallelRun(prepareFiles,commits[['commit','files']].values.tolist(),dsName)
+        # prepareFiles(s)
+
+
+def markBugFixingPatches(commits,dsName):
+    # from pandarallel import pandarallel
+    #
+    # pandarallel.initialize()
+    # commits['files'] = commits.commit.parallel_apply(checkCommitLog)
+    # commits
+
+    f = parallelRunMergeNew(checkCommitLog, commits['commit'].values.tolist(), dsName)
+    res = pd.merge(commits, f, on=['commit'])
+    commits=res
+    #
+    # # commits['isC'] = commits.files.apply(lambda x:np.any([i.endswith('.c') or i.endswith('.h') for i in x.keys() ]))
+    # commits['isC'] = commits.files.apply(lambda x:np.all([i.endswith('.c') for i in x.keys() ]))
+    #
+    # commits = commits[commits.isC == True]
+
+    # commits.commit.parallel_apply(getCommitLog)
+    f = parallelRunMergeNew(getCommitLog, commits['commit'].values.tolist(),dsName)
+
+    res = pd.merge(commits, f, on=['commit'])
+
+    save_zipped_pickle(res, join(COMMIT_DFS, dsName+'Fix' + ".pickle"))
+    return res
+
+
+def getAllCommits(datasetName):
+    if isfile(join(COMMIT_DFS,datasetName+'Fix.pickle')):
+        return load_zipped_pickle(join(COMMIT_DFS,datasetName+'Fix.pickle'))
+    else:
+
+        if isfile(join(COMMIT_DFS,datasetName+'.pickle')):
+            commits =  load_zipped_pickle(join(COMMIT_DFS,datasetName+'.pickle'))
+        else:
+            if not os.path.exists(COMMIT_DFS):
+                os.mkdir(COMMIT_DFS)
+
+
+            cmd = 'git -C ' + join(DATASET_PATH,datasetName) + " log --no-merges --pretty=format:'{\"commit\":\"%H\",\"commitDate\":\"%ci\",\"title\":\"%f\",\"committer\":\"%ce\"}' > " + join(COMMIT_DFS,datasetName + '.commits')
+            output = shellCallTemplate(cmd, enc='latin1')
+
+            from commitCollector import makeDF
+            rDF = makeDF(join(COMMIT_DFS,datasetName + '.commits'))
+            save_zipped_pickle(rDF, join(COMMIT_DFS, datasetName + ".pickle"))
+            # return rDF
+            commits = rDF
+        return markBugFixingPatches(commits,datasetName)
+
+
+def core():
+    datasets = pd.read_csv(join(ROOT,'data', 'datasets.csv'))
+    # repoList = ['FFmpeg','curl','nginx','openssl','redis','tmux','vlc']
+    pjs = listdir(DATASET_PATH)
+    # newRepo = ['php-src','libtiff','cpython']
+    pjs = [i for i in pjs if not (i.startswith('.') or i.startswith('codeflaws'))]
+    # pjs = [i for i in pjs if (i in newRepo )]
+    repoList = pjs
+    for repo,src in datasets.values.tolist():
+        cmd = 'git -C ' + DATASET_PATH + ' clone ' + src
+        shellCallTemplate(cmd)
+        logging.info(repo)
+        collectBugFixPatches(repo)
+
+def codeflaws():
+    cf = listdir(join(DATASET_PATH,'codeflaws'))
+
+    type = join(DATASET,'codeflaws')
+    folderDiff = join(type, 'DiffEntries')
+    folderPrev = join(type, 'prevFiles')
+    folderRev = join(type, 'revFiles')
+    if not os.path.exists(folderDiff):
+        os.makedirs(folderDiff)
+
+    if not os.path.exists(folderPrev):
+        os.makedirs(folderPrev)
+
+    if not os.path.exists(folderRev):
+        os.makedirs(folderRev)
+    cfBugs = [i for i in cf if os.path.isdir(join(DATASET_PATH,'codeflaws',i))]
+    for cfBug in cfBugs:
+        bugs = [i for i in listdir(join(DATASET_PATH,'codeflaws',cfBug)) if i.endswith('.c')]
+        bugs.sort()
+        if len(bugs) == 2:
+            s1 = bugs[0].replace('.c', '').split('-')
+            s2 = bugs[1].replace('.c', '').split('-')
+            prev = s1[-1]
+            rev = s2[-1]
+            bugName = '-'.join(s1[: -1])
+            shutil.copy(join(DATASET_PATH,'codeflaws',cfBug,bugs[0]),join(folderPrev,"prev_"+bugName+"-"+prev+"-"+rev+'.c'))
+            shutil.copy(join(DATASET_PATH,'codeflaws',cfBug,bugs[1]),join(folderRev,bugName+"-"+prev+"-"+rev+'.c'))
+            cmd = 'diff -u ' + join(DATASET_PATH,'codeflaws',cfBug,bugs[0]) + ' ' + join(DATASET_PATH,'codeflaws',cfBug,bugs[1])+ ' > ' + join(folderDiff,bugName+"-"+prev+"-"+rev+'.c.txt')
+            logging.info(cmd)
+            output, e = shellGitCheckout(cmd)
+            logging.info(output)
+        else:
+            print()
+
diff --git a/python/out b/python/out
new file mode 100644
index 0000000..e3a740a
--- /dev/null
+++ b/python/out
@@ -0,0 +1,52633 @@
+On branch master
+Your branch is up to date with 'origin/master'.
+
+Changes to be committed:
+  (use "git reset HEAD ..." to unstage)
+
+	deleted:    actionsPattern2verify.csv
+	new file:   data/FixPatternMiner-1.0.0.jar
+	deleted:    data/pairs/AssertStatement/18.index
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+	data/tokens/SwitchCase/4/0/0/1/hive_35227e_2b59337_jdbc#src#java#org#apache#hive#jdbc#JdbcColumn.txt_11
+	data/tokens/SwitchCase/4/0/0/1/hive_35227e_2b59337_jdbc#src#java#org#apache#hive#jdbc#JdbcColumn.txt_3
+	data/tokens/SwitchCase/4/0/0/1/hive_35227e_2b59337_jdbc#src#java#org#apache#hive#jdbc#JdbcColumn.txt_7
+	data/tokens/SwitchStatement/2/0/0/0/commons-collections_9ea429_ce86f3_src#main#java#org#apache#commons#collections4#map#Flat3Map.txt_23
+	data/tokens/SynchronizedStatement/2/0/
+	data/tokens/ThrowStatement/2/0/1/
+	data/tokens/ThrowStatement/3/1/0/1/spring-security_475f25_37bb35_core#src#main#java#org#springframework#security#authentication#dao#DaoAuthenticationProvider.txt_0
+	data/tokens/ThrowStatement/3/1/0/1/spring-security_475f25_37bb35_core#src#main#java#org#springframework#security#authentication#dao#DaoAuthenticationProvider.txt_1
+	data/tokens/ThrowStatement/3/1/0/2/hive_40a368_32019c_ql#src#java#org#apache#hadoop#hive#ql#parse#SemanticAnalyzer.txt_2
+	data/tokens/ThrowStatement/3/1/0/2/hive_aead0a_c15c58_ql#src#java#org#apache#hadoop#hive#ql#optimizer#optiq#translator#DerivedTableInjector.txt_0
+	data/tokens/ThrowStatement/3/1/0/3/hbase_6b30bf_9b0a00_src#main#java#org#apache#hadoop#hbase#regionserver#HRegion.txt_0
+	data/tokens/ThrowStatement/3/1/0/3/hbase_6c7543_97acb9ef_hbase-client#src#main#java#org#apache#hadoop#hbase#protobuf#ProtobufUtil.txt_0
+	data/tokens/ThrowStatement/3/1/0/3/hbase_ec9c9e_af4e4b_hbase-client#src#main#java#org#apache#hadoop#hbase#client#ConnectionImplementation.txt_0
+	data/tokens/ThrowStatement/3/1/0/4/hive_7752c8_f137b0_jdbc#src#java#org#apache#hive#jdbc#HiveStatement.txt_0
+	data/tokens/ThrowStatement/3/1/0/4/hive_7752c8_f137b0_jdbc#src#java#org#apache#hive#jdbc#HiveStatement.txt_2
+	data/tokens/ThrowStatement/3/1/0/4/hive_7752c8_f137b0_jdbc#src#java#org#apache#hive#jdbc#HiveStatement.txt_4
+	data/tokens/ThrowStatement/3/1/0/5/commons-compress_00cc49_f90c1c_src#main#java#org#apache#commons#compress#archivers#zip#ZipFile.txt_0
+	data/tokens/ThrowStatement/3/1/0/5/hbase_50f8579_261478_hbase-server#src#main#java#org#apache#hadoop#hbase#snapshot#ExportSnapshot.txt_4
+	data/tokens/ThrowStatement/3/1/0/5/hbase_50f8579_261478_hbase-server#src#main#java#org#apache#hadoop#hbase#snapshot#ExportSnapshot.txt_5
+	data/tokens/ThrowStatement/5/2/1/0/camel_39ccf5_96bf57_camel-core#src#main#java#org#apache#camel#support#XMLTokenExpressionIterator.txt_1
+	data/tokens/ThrowStatement/5/2/1/0/hbase_58dfa2_1c90f1_src#main#java#org#apache#hadoop#hbase#mapreduce#TableOutputFormat.txt_1
+	data/tokens/ThrowStatement/5/2/1/0/hive_f8724d_40711a_serde#src#java#org#apache#hadoop#hive#serde2#thrift#TCTLSeparatedProtocol.txt_4
+	data/tokens/ThrowStatement/5/2/1/0/wildfly-core_a01d36_97eaa6_cli#src#main#java#org#jboss#as#cli#impl#Console.txt_2
+	data/tokens/ThrowStatement/5/2/1/1/hbase_2f2513_0a2417_hbase-backup#src#main#java#org#apache#hadoop#hbase#backup#impl#IncrementalTableBackupClient.txt_0
+	data/tokens/ThrowStatement/5/2/1/1/hbase_2f2513_0a2417_hbase-backup#src#main#java#org#apache#hadoop#hbase#backup#impl#IncrementalTableBackupClient.txt_3
+	data/tokens/ThrowStatement/5/2/1/1/hbase_2f2513_0a2417_hbase-backup#src#main#java#org#apache#hadoop#hbase#backup#impl#IncrementalTableBackupClient.txt_4
+	data/tokens/ThrowStatement/5/2/1/1/hbase_6e8cde_e4106b_hbase-server#src#main#java#org#apache#hadoop#hbase#regionserver#wal#SequenceFileLogReader.txt_6
+	data/tokens/ThrowStatement/6/0/
+	data/tokens/ThrowStatement/7/
+	data/tokens/ThrowStatement/9/
+	data/tokens/TryStatement/15/
+	data/tokens/TryStatement/16/0/
+	data/tokens/TryStatement/38/
+	data/tokens/TryStatement/4/2/
+	data/tokens/TypeDeclaration/2/1/1/
+	data/tokens/TypeDeclaration/3/
+	data/tokens/VariableDeclarationStatement/10/3/
+	data/tokens/VariableDeclarationStatement/12/1/
+	data/tokens/VariableDeclarationStatement/14/
+	data/tokens/VariableDeclarationStatement/15/2/
+	data/tokens/VariableDeclarationStatement/18/
+	data/tokens/VariableDeclarationStatement/19/
+	data/tokens/VariableDeclarationStatement/3/0/0/0/commons-collections_1d5610_95a3fe_src#java#org#apache#commons#collections#map#Flat3Map.txt_1
+	data/tokens/VariableDeclarationStatement/3/0/0/0/commons-collections_1d5610_95a3fe_src#java#org#apache#commons#collections#map#Flat3Map.txt_4
+	data/tokens/VariableDeclarationStatement/3/0/0/1/wildfly_375ee8_23a176_osgi#service#src#main#java#org#jboss#as#osgi#service#BundleLifecycleIntegration.txt_13
+	data/tokens/VariableDeclarationStatement/3/0/0/1/wildfly_375ee8_23a176_osgi#service#src#main#java#org#jboss#as#osgi#service#BundleLifecycleIntegration.txt_5
+	data/tokens/VariableDeclarationStatement/3/0/0/10/hive_8feac8_4bef02_metastore#src#java#org#apache#hadoop#hive#metastore#MetaStoreDirectSql.txt_22
+	data/tokens/VariableDeclarationStatement/3/0/0/10/hive_8feac8_4bef02_metastore#src#java#org#apache#hadoop#hive#metastore#MetaStoreDirectSql.txt_26
+	data/tokens/VariableDeclarationStatement/3/0/0/11/wildfly-core_7cc98e_d1ff30_logging#src#main#java#org#jboss#as#logging#HandlerOperations.txt_13
+	data/tokens/VariableDeclarationStatement/3/0/0/11/wildfly-core_7cc98e_d1ff30_logging#src#main#java#org#jboss#as#logging#HandlerOperations.txt_4
+	data/tokens/VariableDeclarationStatement/3/0/0/13/spring-framework_bc3e58_25e29b_spring-beans#src#main#java#org#springframework#beans#factory#support#AbstractBeanFactory.txt_0
+	data/tokens/VariableDeclarationStatement/3/0/0/13/spring-framework_bc3e58_25e29b_spring-beans#src#main#java#org#springframework#beans#factory#support#AbstractBeanFactory.txt_5
+	data/tokens/VariableDeclarationStatement/3/0/0/2/spring-framework_779cf8_06f9fb_spring-core#src#main#java#org#springframework#util#ConcurrentReferenceHashMap.txt_19
+	data/tokens/VariableDeclarationStatement/3/0/0/2/spring-framework_779cf8_06f9fb_spring-core#src#main#java#org#springframework#util#ConcurrentReferenceHashMap.txt_2
+	data/tokens/VariableDeclarationStatement/3/0/0/2/spring-framework_779cf8_06f9fb_spring-core#src#main#java#org#springframework#util#ConcurrentReferenceHashMap.txt_23
+	data/tokens/VariableDeclarationStatement/3/0/0/2/spring-framework_779cf8_06f9fb_spring-core#src#main#java#org#springframework#util#ConcurrentReferenceHashMap.txt_34
+	data/tokens/VariableDeclarationStatement/3/0/0/4/commons-collections_1d5610_95a3fe_src#java#org#apache#commons#collections#map#Flat3Map.txt_0
+	data/tokens/VariableDeclarationStatement/3/0/0/4/commons-collections_1d5610_95a3fe_src#java#org#apache#commons#collections#map#Flat3Map.txt_3
+	data/tokens/VariableDeclarationStatement/3/0/0/6/spring-framework_9dd6f4_7af890_org.springframework.core#src#main#java#org#springframework#util#StringUtils.txt_0
+	data/tokens/VariableDeclarationStatement/3/0/0/6/spring-framework_9dd6f4_7af890_org.springframework.core#src#main#java#org#springframework#util#StringUtils.txt_6
+	data/tokens/VariableDeclarationStatement/3/0/0/7/spring-framework_004224_2fa9ef_org.springframework.context#src#main#java#org#springframework#context#support#DefaultLifecycleProcessor.txt_0
+	data/tokens/VariableDeclarationStatement/3/0/0/7/spring-framework_004224_2fa9ef_org.springframework.context#src#main#java#org#springframework#context#support#DefaultLifecycleProcessor.txt_6
+	data/tokens/VariableDeclarationStatement/3/0/0/8/spring-framework_356ef4_cc12af_spring-core#src#main#java#org#springframework#util#ConcurrentReferenceHashMap.txt_10
+	data/tokens/VariableDeclarationStatement/3/0/0/8/spring-framework_356ef4_cc12af_spring-core#src#main#java#org#springframework#util#ConcurrentReferenceHashMap.txt_13
+	data/tokens/VariableDeclarationStatement/3/0/0/9/hbase_b92ff2_54d70e_hbase-server#src#main#java#org#apache#hadoop#hbase#regionserver#HRegion.txt_3
+	data/tokens/VariableDeclarationStatement/3/0/0/9/hbase_b92ff2_54d70e_hbase-server#src#main#java#org#apache#hadoop#hbase#regionserver#HRegion.txt_5
+	data/tokens/VariableDeclarationStatement/4/0/0/0/camel_4d03e9_8f89b4_camel-core#src#main#java#org#apache#camel#component#seda#SedaProducer.txt_1
+	data/tokens/VariableDeclarationStatement/4/0/0/0/camel_6c8620_5c13e0_camel-core#src#main#java#org#apache#camel#processor#RoutingSlip.txt_0
+	data/tokens/VariableDeclarationStatement/4/0/0/0/camel_6c8620_5c13e0_camel-core#src#main#java#org#apache#camel#processor#RoutingSlip.txt_6
+	data/tokens/VariableDeclarationStatement/4/0/0/1/camel_e4ff4dd_86dff9_camel-core#src#main#java#org#apache#camel#support#TokenPairExpressionIterator.txt_2
+	data/tokens/VariableDeclarationStatement/4/0/0/1/hive_eb6dc3_b69a44_ql#src#java#org#apache#hadoop#hive#ql#exec#Utilities.txt_2
+	data/tokens/VariableDeclarationStatement/4/0/0/2/hive_ec7ccc_8cf36e_standalone-metastore#src#main#java#org#apache#hadoop#hive#metastore#ObjectStore.txt_2
+	data/tokens/VariableDeclarationStatement/4/0/0/2/hive_ec7ccc_8cf36e_standalone-metastore#src#main#java#org#apache#hadoop#hive#metastore#ObjectStore.txt_9
+	data/tokens/VariableDeclarationStatement/4/0/0/3/hbase_4c2c98_c661d9_hbase-server#src#main#java#org#apache#hadoop#hbase#mapreduce#LabelExpander.txt_1
+	data/tokens/VariableDeclarationStatement/4/0/0/3/hbase_65e1ac_23da6d_hbase-client#src#main#java#org#apache#hadoop#hbase#client#MetaScanner.txt_1
+	data/tokens/VariableDeclarationStatement/5/2/
+	data/tokens/VariableDeclarationStatement/6/3/
+	data/tokens/VariableDeclarationStatement/7/0/
+	data/tokens/VariableDeclarationStatement/8/11/
+	out
+
diff --git a/python/pairs.py b/python/pairs.py
new file mode 100644
index 0000000..11a81d8
--- /dev/null
+++ b/python/pairs.py
@@ -0,0 +1,363 @@
+from common.commons import *
+DATA_PATH = os.environ["DATA_PATH"]
+ROOT = os.environ["ROOT_DIR"]
+INNER_DATA_PATH = join(ROOT,'data')
+PROJECT_TYPE = os.environ["PROJECT_TYPE"]
+def importToken():
+    # global dbDir, portInner, redis_db, pairs, cluster, action, e, idx, v, key
+    dbDir = join(INNER_DATA_PATH, 'redis')
+    portInner = '6380'
+    dbDir = join(INNER_DATA_PATH, 'redis')
+    startDB(dbDir, portInner, "clusterl2-gumInputALL.rdb")
+    import redis
+    pairsToken = join(DATA_PATH, 'pairsToken')
+    redis_db = redis.StrictRedis(host="localhost", port=portInner, db=1)
+    pairs = get_filepaths(pairsToken, '.txt')
+    for pair in pairs:
+        split = pair.split("/")
+
+        shapeName = split[-4]
+        shapeSize = split[-3]
+        cluster = split[-2]
+        action = split[-1].replace('.txt', '')
+
+        # cmd ="bash " + join(DATA_PATH,'redisSingleImport.sh') + " " +  pair + " 6380 " +  shapeName + "-"+sizeCluster+"-"+actionCluster ;#+, portInner,f.getName()+"-"+pair.getName().split("\\.")[0]);
+        cmd = "bash " + join(INNER_DATA_PATH,
+                             'redisSingleImport.sh') + " " + pair + " 6380 " + shapeName + "-" + shapeSize + "-" + cluster + "-" + action;  # +, portInner,f.getName()+"-"+pair.getName().split("\\.")[0]);
+
+        o, e = shellGitCheckout(cmd)
+        o
+        indexFile = pair.replace('.txt', '.index')
+        with open(indexFile, 'r') as iFile:
+            idx = iFile.readlines()
+        for i in idx:
+            k, v = i.split(',')
+            key = shapeName + "-" + shapeSize + "-" + cluster + "-" + action + "-" + k
+            # redis_db.set(key, v.strip())
+            redis_db.hset('filenames', key, v.strip())
+
+def importAction(rootType):
+    # global dbDir, portInner, redis_db, pairs, pair, split, shapeName, shapeSize, cluster, cmd, o, e, indexFile, iFile, idx, i, k, v, key
+    dbDir = join(INNER_DATA_PATH, 'redis')
+    # portInner = '6380'
+    # startDB(dbDir, portInner, "clusterl1-gumInputALL.rdb")
+    portInner = '6399'
+    startDB(dbDir, portInner, PROJECT_TYPE)
+
+    import redis
+    # import pairs
+    pairsAction = join(DATA_PATH, 'pairsAction',rootType)
+    redis_db = redis.StrictRedis(host="localhost", port=portInner, db=1)
+    pairs = get_filepaths(pairsAction, '.txt')
+    for pair in pairs:
+        split = pair.split("/")
+        shapeName = split[-3]
+        shapeSize = split[-2]
+        cluster = split[-1].replace('.txt', '')
+        cmd = "bash " + join(INNER_DATA_PATH,
+                             'redisSingleImport.sh') + " " + pair + " 6399 " + shapeName + "-" + shapeSize + "-" + cluster;  # +, portInner,f.getName()+"-"+pair.getName().split("\\.")[0]);
+
+        o, e = shellGitCheckout(cmd)
+        print(o)
+        indexFile = pair.replace('.txt', '.index')
+        with open(indexFile, 'r') as iFile:
+            idx = iFile.readlines()
+        for i in idx:
+            k, v = i.split(',')
+            key = shapeName + "-" + shapeSize + "-" + cluster + "-" + k
+            # redis_db.set(key, v.strip())
+            redis_db.hset('filenames', key, v.strip())
+
+
+# def importShape():
+#     # global dbDir, portInner, redis_db, pairs, pair, split, shapeName, cmd, o, e, indexFile, iFile, idx, i, k, v, key
+#     dbDir = join(DATA_PATH, 'redis')
+#     portInner = '6380'
+#     startDB(dbDir, portInner, "clusterl1-gumInputALL.rdb")
+#     import redis
+#     pairsShapes = join(DATA_PATH, 'pairs')
+#     redis_db = redis.StrictRedis(host="localhost", port=portInner, db=1)
+#     pairs = get_filepaths(pairsShapes, '.index')
+#     l = []
+#     for pair in pairs:
+#         # split = pair.split("/")
+#         # shapeName = split[-2]
+#         # sizeCluster = split[-1].replace('.txt', '')
+#         # cmd = "bash " + join(DATA_PATH, 'redisSingleImport.sh') + " " + pair + " 6380 " + shapeName + "-" + sizeCluster;
+#         #
+#         # o, e = shellGitCheckout(cmd)
+#         # print(o)
+#         # indexFile = pair.replace('.txt', '.index')
+#         with open(pair, 'r') as iFile:
+#             idx = iFile.readlines()
+#             idx = [i.split(',')[1] for i in idx]
+#             l.append(idx)
+#     l = list(itertools.chain.from_iterable(l))
+#     l = [i for i in l if not (i.startswith('commons-math') or i.startswith('commons-lang') or i.startswith(
+#         'closure-compiler') or i.startswith('joda-time') or i.startswith('mockito') or i.startswith('jfreechart'))]
+#     l
+#
+#         # for i in idx:
+#         #     k, v = i.split(',')
+#         #     key = shapeName + "-" + sizeCluster + "-" + k
+#         #     redis_db.set(key, v.strip())
+
+
+def importShape():
+    # global dbDir, portInner, redis_db, pairs, pair, split, shapeName, cmd, o, e, indexFile, iFile, idx, i, k, v, key
+    dbDir = join(INNER_DATA_PATH, 'redis')
+    # portInner = '6380'
+    # startDB(dbDir, portInner, "clusterl0-gumInputALL.rdb")
+
+    portInner = '6399'
+    startDB(dbDir, portInner, PROJECT_TYPE)
+
+    import redis
+    pairsShapes = join(DATA_PATH, 'pairs')
+    redis_db = redis.StrictRedis(host="localhost", port=portInner, db=1)
+    pairs = get_filepaths(pairsShapes, '.txt')
+    for pair in pairs:
+        split = pair.split("/")
+        shapeName = split[-2]
+        sizeCluster = split[-1].replace('.txt', '')
+        cmd = "bash " + join(INNER_DATA_PATH, 'redisSingleImport.sh') + " " + pair + " 6399 " + shapeName + "-" + sizeCluster;
+
+        o, e = shellGitCheckout(cmd)
+        print(o)
+        indexFile = pair.replace('.txt', '.index')
+        with open(indexFile, 'r') as iFile:
+            idx = iFile.readlines()
+        for i in idx:
+            k, v = i.split(',')
+            key = shapeName + "-" + sizeCluster + "-" + k
+            #redis_db.set(key, v.strip())
+            redis_db.hset('filenames',key,v.strip())
+
+def tokenPairs():
+    global shapes, shape, sizes, clusters, cluster, actions, action, idx, val, pairs
+    shapes = listdir(join(DATA_PATH, 'actions'))
+    shapes = [f for f in shapes if isdir(join(DATA_PATH, 'actions', f))]
+    for shape in shapes:
+        sizes = listdir(join(DATA_PATH, 'actions', shape))
+        sizes = [f for f in sizes if isdir(join(DATA_PATH, 'actions', shape, f))]
+        for sf in sizes:
+            if sf.startswith('.'):
+                continue
+            if sf == '1':
+                continue
+            clusters = listdir(join(DATA_PATH, 'actions', shape, sf))
+            for cluster in clusters:
+                if cluster.startswith('.'):
+                    continue
+                actions = listdir(join(DATA_PATH, 'actions', shape, sf, cluster))
+                for action in actions:
+
+                    files = listdir(join(DATA_PATH, 'actions', shape, sf, cluster, action))
+                    indexCompared = []
+                    if not os.path.exists(join(DATA_PATH, 'pairsToken', shape, sf, cluster)):
+                        os.makedirs(join(DATA_PATH, 'pairsToken', shape, sf, cluster))
+
+                    infexFile = join(DATA_PATH, 'pairsToken', shape, sf, cluster, action + '.index')
+                    if isfile(infexFile):
+                        test = pd.read_csv(infexFile, header=None, index_col=0)
+                        test.rename(columns={1: 'filename'}, inplace=True)
+
+                        newFiles = [i for i in files if i not in test.filename.values.tolist()]
+                        for newFile in newFiles:
+                            test = test.append(pd.DataFrame(columns=['filename'], data=[newFile]), ignore_index=True)
+                        indexCompared = test.index.values.tolist()
+                        test.to_csv(infexFile, header=None)
+                    else:
+                        with open(infexFile, 'w') as out:
+                            # csv_out = csv.writer(out)
+
+                            for idx, val in enumerate(files):
+                                out.write(str(idx) + ',' + val + '\n')
+                                indexCompared.append(str(idx))
+
+                    pairs = list(itertools.combinations(indexCompared, 2))
+                    pairsFile = join(DATA_PATH, 'pairsToken', shape, sf, cluster, action + '.txt')
+                    if isfile(pairsFile):
+                        test = pd.read_csv(pairsFile, header=None)
+                        test['pairs'] = test.apply(lambda x: tuple([x[0], x[1]]), axis=1)
+                        newPairs = [i for i in pairs if i not in test['pairs'].values.tolist()]
+                        with open(pairsFile, 'w') as out:
+                            # csv_out = csv.writer(out)
+                            for row in newPairs:
+                                a, b = row
+                                out.write(a + ',' + b + '\n')
+                    else:
+                        with open(pairsFile, 'w') as out:
+                            # csv_out = csv.writer(out)
+                            for row in pairs:
+                                a, b = row
+                                out.write(a + ',' + b + '\n')
+
+def actionPairs(rootType):
+    # global shapes, shape, sizes, sf, clusters, cluster, files, indexCompared, out, idx, val, pairs, row, a, b
+    # shapes = listdir(join(DATA_PATH, 'shapes'))
+    # shapes = [f for f in shapes if isdir(join(DATA_PATH, 'shapes', f))]
+    shapes = [rootType]
+    for shape in shapes:
+        sizes = listdir(join(DATA_PATH, 'shapes', shape))
+        sizes = [f for f in sizes if isdir(join(DATA_PATH, 'shapes', shape, f))]
+        for sf in sizes:
+            if sf.startswith('.'):
+                continue
+            clusters = listdir(join(DATA_PATH, 'shapes', shape, sf))
+            for cluster in clusters:
+                if cluster.startswith('.'):
+                    continue
+                files = listdir(join(DATA_PATH, 'shapes', shape, sf, cluster))
+                indexCompared = []
+                if not os.path.exists(join(DATA_PATH, 'pairsAction', shape, sf)):
+                    os.makedirs(join(DATA_PATH, 'pairsAction', shape, sf))
+
+                indexFile = join(DATA_PATH, 'pairsAction', shape, sf, cluster + '.index')
+                if isfile(indexFile):
+                    test = pd.read_csv(indexFile, header=None, index_col=0)
+                    test.rename(columns={1: 'filename'}, inplace=True)
+
+                    newFiles = [i for i in files if i not in test.filename.values.tolist()]
+                    for newFile in newFiles:
+                        test = test.append(pd.DataFrame(columns=['filename'], data=[newFile]), ignore_index=True)
+                    indexCompared = test.index.values.tolist()
+                    test.to_csv(indexFile, header=None)
+                else:
+                    with open(indexFile, 'w') as out:
+                        # csv_out = csv.writer(out)
+
+                        for idx, val in enumerate(files):
+                            out.write(str(idx) + ',' + val + '\n')
+                            indexCompared.append(str(idx))
+
+                pairs = list(itertools.combinations(indexCompared, 2))
+
+                pairsFile = join(DATA_PATH, 'pairsAction', shape, sf, cluster + '.txt')
+                if isfile(pairsFile):
+                    test = pd.read_csv(pairsFile, header=None)
+                    test['pairs'] = test.apply(lambda x: tuple([x[0], x[1]]), axis=1)
+                    newPairs = [i for i in pairs if i not in test['pairs'].values.tolist()]
+                    with open(pairsFile, 'w') as out:
+                        # csv_out = csv.writer(out)
+                        for row in newPairs:
+                            a, b = row
+                            out.write(a + ',' + b + '\n')
+                else:
+                    with open(pairsFile, 'w') as out:
+                        # csv_out = csv.writer(out)
+                        for row in pairs:
+                            a, b = row
+                            out.write(a + ',' + b + '\n')
+
+def shapePairs():
+    # global dbDir, portInner, redis_db, keys, matches, roots, sizes, sf, files, indexCompared, out, idx, val, pairs, row, a, b
+    # if not (isfile(join(DATA_PATH, 'studyDataset.pickle'))):
+    dbDir = join(INNER_DATA_PATH, 'redis')
+
+    portInner = '6399'
+    startDB(dbDir, portInner, PROJECT_TYPE)
+
+    import redis
+    redis_db = redis.StrictRedis(host="localhost", port=portInner, db=0)
+    keys = redis_db.hkeys("dump")#hkeys "dump"
+    # keys = redis_db.scan(0, match='*', count='1000000')
+
+    matches = pd.DataFrame(keys, columns=['pairs_key'])
+
+    # matches = load_zipped_pickle(join(DATA_PATH,'singleHunks'))
+    matches['pairs_key'] = matches['pairs_key'].apply(lambda x: x.decode())
+    matches['root'] = matches['pairs_key'].apply(lambda x: x.split('/')[0])
+    matches['size'] = matches['pairs_key'].apply(lambda x: x.split('/')[1])
+    matches['file'] = matches['pairs_key'].apply(lambda x: x.split('/')[2])
+
+    # matches[matches.file.apply(
+    #     lambda i: (i.startswith('commons-math.git') or i.startswith('commons-lang.git') or i.startswith(
+    #         'closure-compiler.git') or i.startswith('joda-time.git') or i.startswith('mockito.git')))]
+    matches['fileName'] = matches['pairs_key'].apply(lambda x: '_'.join(x.split('/')[2].split('_')[:-1]))
+    # else:
+
+        # matches = load_zipped_pickle(join(DATA_PATH, 'studyDataset.pickle'))
+        # matches = matches[matches.repo.apply(lambda i: not (
+        #             i.startswith('commons-math') or i.startswith('commons-lang') or i.startswith(
+        #         'closure-compiler.git') or i.startswith('joda-time.git') or i.startswith('mockito.git')))]
+
+    # matches = matches[matches['size'] != '1']
+    matches['hunk'] = matches['pairs_key'].apply(lambda x: x.split('/')[2].split('_')[-1])
+    # test = matches[['fileName', 'hunk']]
+    # df = test.groupby(by=['fileName'], as_index=False).agg(lambda x: x.tolist())
+    # sDF = df[df.hunk.apply(lambda x: True if x == ['0'] else False)]
+    # # sDF = df[df.hunk.apply(lambda x: True if len(x)<10005 else False)]
+    # singleHunkedFiles = sDF.fileName.unique().tolist()
+    # # singleHunkedFiles = [i.replace('.txt', '') for i in singleHunkedFiles]
+    # matches = matches[matches.fileName.isin(singleHunkedFiles)]
+
+
+    return matches
+
+def createPairs(matches):
+
+    if len(matches) == 0:
+        return True
+    roots = matches.root.unique().tolist()
+    # roots = listdir(join(DATA_PATH,'EnhancedASTDiffgumInput'))
+    if os.path.exists(join(DATA_PATH, 'pairs')):
+        import shutil
+        shutil.rmtree(join(DATA_PATH, 'pairs'))
+    for root in roots:
+        # if root.startswith('.'):
+        #     continue
+        rootMatch = matches[matches['root'] == root]
+        sizes = rootMatch['size'].unique().tolist()
+        for sf in sizes:
+            # if sf == '1':
+            #     continue
+            match = rootMatch[rootMatch['size'] == sf]
+            files = match.file.unique().tolist()
+
+            if len(files) > 1:
+                files
+                indexCompared = []
+                if not os.path.exists(join(DATA_PATH, 'pairs', root)):
+                    os.makedirs(join(DATA_PATH, 'pairs', root))
+
+
+                indexFile = join(DATA_PATH, 'pairs', root, sf + '.index')
+                if isfile(indexFile):
+                    test = pd.read_csv(indexFile, header=None, index_col=0)
+                    test.rename(columns={1: 'filename'}, inplace=True)
+
+                    newFiles = [i for i in files if i not in test.filename.values.tolist()]
+                    for newFile in newFiles:
+                        test = test.append(pd.DataFrame(columns=['filename'], data=[newFile]), ignore_index=True)
+                    indexCompared = test.index.values.tolist()
+                    test.to_csv(indexFile, header=None)
+                else:
+
+                    with open(indexFile, 'w') as out:
+                        # csv_out = csv.writer(out)
+
+                        for idx, val in enumerate(files):
+                            out.write(str(idx) + ',' + val + '\n')
+                            indexCompared.append(str(idx))
+
+                pairs = list(itertools.combinations(indexCompared, 2))
+
+                # import csv
+                pairsFile = join(DATA_PATH, 'pairs', root, sf + '.txt')
+                if isfile(pairsFile):
+                    test = pd.read_csv(pairsFile, header=None)
+                    test['pairs'] = test.apply(lambda x: tuple([x[0], x[1]]), axis=1)
+                    newPairs = [i for i in pairs if i not in test['pairs'].values.tolist()]
+                    with open(pairsFile, 'w') as out:
+                        # csv_out = csv.writer(out)
+                        for row in newPairs:
+                            a, b = row
+                            out.write(a + ',' + b + '\n')
+                else:
+                    with open(pairsFile, 'w') as out:
+                        # csv_out = csv.writer(out)
+                        for row in pairs:
+                            a, b = row
+                            out.write(a + ',' + b + '\n')
+    return False
\ No newline at end of file
diff --git a/python/patchManyBugs.py b/python/patchManyBugs.py
new file mode 100644
index 0000000..6486c14
--- /dev/null
+++ b/python/patchManyBugs.py
@@ -0,0 +1,206 @@
+from common.commons import *
+DATA_PATH = os.environ["DATA_PATH"]
+SPINFER_PATH = os.environ["spinfer"]
+ROOT_DIR = os.environ["ROOT_DIR"]
+SPINFER_INDEX_PATH = os.environ["dataset"]
+COCCI_PATH = join(os.environ["coccinelle"],'spatch')
+DATASET = os.environ["dataset"]
+
+import bugzoo
+from bugzoo import server, Container
+from bugzoo import Patch, Client
+import signal
+
+sosbugs = ['manybugs:gmp:14166-14167', 'manybugs:gzip:2009-08-16-3fe0caeada-39a362ae9d',
+           'manybugs:gzip:2009-10-09-1a085b1446-118a107f2d', 'manybugs:gzip:2010-02-19-3eb6091d69-884ef6d16c',
+           'manybugs:libtiff:2005-12-21-3b848a7-3edb9cd', 'manybugs:libtiff:2006-03-03-a72cf60-0a36d7f',
+           'manybugs:libtiff:2006-03-03-eec4c06-ee65c74', 'manybugs:libtiff:2007-07-13-09e8220-f2d989d',
+           'manybugs:libtiff:2007-11-02-371336d-865f7b2', 'manybugs:libtiff:2009-02-05-764dbba-2e42d63',
+           'manybugs:libtiff:2009-08-28-e8a47d4-023b6df', 'manybugs:libtiff:2010-11-27-eb326f9-eec7ec0',
+           'manybugs:libtiff:2006-02-23-b2ce5d8-207c78a', 'manybugs:lighttpd:2661-2662', 'manybugs:lighttpd:2254-2259',
+           'manybugs:lighttpd:2785-2786', 'manybugs:lighttpd:1948-1949',
+           'manybugs:php:2011-12-10-74343ca506-52c36e60c4', 'manybugs:php:2011-04-02-70075bc84c-5a8c917c37',
+           'manybugs:php:2011-03-25-8138f7de40-3acdca4703', 'manybugs:php:2011-12-04-1e6a82a1cf-dfa08dc325',
+           'manybugs:php:2012-02-08-ff63c09e6f-6672171672', 'manybugs:php:2011-11-19-eeba0b5681-d3b20b4058',
+           'manybugs:php:2011-04-07-77ed819430-efcb9a71cd', 'manybugs:php:2011-02-01-01745fa657-1f49902999',
+           'manybugs:php:2012-03-12-7aefbf70a8-efc94f3115', 'manybugs:php:2011-10-15-0a1cc5f01c-05c5c8958e',
+           'manybugs:php:2011-01-30-5bb0a44e06-1e91069eb4', 'manybugs:php:2011-02-01-fefe9fc5c7-0927309852',
+           'manybugs:php:2011-02-27-e65d361fde-1d984a7ffd', 'manybugs:php:2011-03-19-5d0c948296-8deb11c0c3',
+           'manybugs:php:2011-03-23-63673a533f-2adf58cfcf', 'manybugs:php:2011-04-06-187eb235fe-2e25ec9eb7',
+           'manybugs:php:2011-04-09-db01e840c2-09b990f499', 'manybugs:php:2011-05-17-453c954f8a-daecb2c0f4',
+           'manybugs:php:2011-05-24-b60f6774dc-1056c57fa9', 'manybugs:php:2011-10-16-1f78177e2b-d4ae4e79db',
+           'manybugs:php:2011-10-31-2e5d5e5ac6-b5f15ef561', 'manybugs:php:2011-10-31-c4eb5f2387-2e5d5e5ac6',
+           'manybugs:php:2011-11-01-ceac9dc490-9b0d73af1d', 'manybugs:php:2011-11-11-fcbfbea8d2-c1e510aea8',
+           'manybugs:php:2011-11-15-236120d80e-fb37f3b20d', 'manybugs:php:2011-11-16-55acfdf7bd-3c7a573a2c',
+           'manybugs:php:2011-11-22-ecc6c335c5-b548293b99', 'manybugs:php:2011-11-23-eca88d3064-db0888dfc1',
+           'manybugs:php:2012-01-27-544e36dfff-acaf9c5227', 'manybugs:php:2012-01-30-9de5b6dc7c-4dc8b1ad11',
+           'manybugs:php:2012-02-25-c1322d2505-cfa9c90b20', 'manybugs:php:2012-03-04-60dfd64bf2-34fe62619d',
+           'manybugs:php:2012-03-08-0169020e49-cdc512afb3', 'manybugs:php:2012-03-11-3954743813-d4f05fbffc',
+           'manybugs:php:2012-03-12-438a30f1e7-7337a901b7', 'manybugs:python:69223-69224',
+           'manybugs:python:69368-69372', 'manybugs:python:70098-70101', 'manybugs:python:70056-70059',
+           'manybugs:wireshark:37112-37111', 'manybugs:wireshark:37122-37123', 'manybugs:gmp:13420-13421',
+           'manybugs:gzip:2009-09-26-a1d3d4019d-f17cbd13a1', 'manybugs:lighttpd:1913-1914',
+           'manybugs:php:2011-11-19-51a4ae6576-bc810a443d', 'manybugs:php:2011-03-11-d890ece3fc-6e74d95f34',
+           'manybugs:php:2011-11-19-eeba0b5681-f330c8ab4e', 'manybugs:php:2012-01-01-80dd931d40-7c3177e5ab']
+
+
+def cocciCore(t):
+    cmd, manybug, patchName, spfile,srcPath = t
+    # logging.info(cmd)
+    output, e = shellGitCheckout(cmd)
+    # logging.info(output)
+    patchSize = os.path.getsize(join(DATA_PATH,"manybugs",manybug,'patches',patchName+spfile+'.txt'))
+    if patchSize == 0 :
+        os.remove(join(DATA_PATH,"manybugs",manybug,'patches',patchName+spfile+'.txt'))
+    else:
+        cmd = 'patch -d '+srcPath.replace(patchName,'') + ' -i ' + join(DATA_PATH,"manybugs",manybug,'patches',patchName+spfile+'.txt') + ' -o ' + join(DATA_PATH,"manybugs",manybug,'patched',patchName+spfile+'.c')
+        output, e = shellGitCheckout(cmd)
+        output,e
+        print(output)
+
+
+def buildAll():
+    bugList = []
+    port = 6000
+    for i in sosbugs:
+        t = i,port
+        bugList.append(t)
+        if port == 6300:
+            port = 6000
+        port += 1
+    parallelRun(checkBuild, bugList, max_workers=4)
+
+
+def checkBuild(t):
+    bugName, port = t
+    # port = 3000
+    # cmd = 'bash {} {}'.format(join(DATA_PATH, 'startBugzoo.sh'), port)
+    cmd = 'bash {} {}'.format(join(ROOT_DIR,'data', 'buildBugzoo.sh'), bugName)
+
+    out, e = shellGitCheckout(cmd)
+
+    # container = None
+    # with Popen(cmd, stdout=PIPE, stderr=PIPE, shell=True) as process:
+    #
+    #     # o,e = shellGitCheckout(cmd)
+    #     url = "http://127.0.0.1:{}".format(port)
+    #     timeout_connection = 3000
+    #     client = Client(url, timeout_connection=timeout_connection)
+    #
+    #     try:
+    #         bug = client.bugs[bugName]
+    #         if not client.bugs.is_installed(bug):
+    #             print(' building ' + bugName)
+    #             o = client.bugs.build(bug)
+    #
+    #             # client.bugs.download(bug)
+    #             # print("the image is not installed :'(")
+    #
+    #         # print("creating container...")
+    #         container = client.containers.provision(bug)
+    #
+    #     except Exception as e:
+    #         logging.error(e)
+    #         # continue
+    #     finally:
+    #         # ''
+    #         cmd = 'docker stop {}'.format(container.id)
+    #         out, e = shellGitCheckout(cmd)
+    #         client.shutdown()
+    #         os.killpg(process.pid, signal.SIGTERM)
+
+def patchCore():
+    try:
+
+        pathManyBug = join(DATA_PATH, "manybugs")
+        manybugs = listdir(pathManyBug)
+
+        manybugs = [i for i in manybugs if i in sosbugs]
+        spfiles = listdir(join(DATASET,'cocci'))
+
+        from sprinferIndex import filterPatterns
+        filteredPattern = filterPatterns()
+
+        spfiles = [i for i in spfiles if i in filteredPattern]
+        workList = []
+        for manybug in manybugs:
+            if manybug == '.DS_Store':
+                continue
+            # files = listdir(join(join(DATA_PATH,"manybugs",manybug,'diffs')))
+            if  os.path.exists(join(pathManyBug, manybug, 'patches')):
+                shutil.rmtree(join(pathManyBug, manybug, 'patches'))
+
+                os.mkdir(join(pathManyBug, manybug, 'patches'))
+            else:
+                os.mkdir(join(pathManyBug, manybug, 'patches'))
+
+            if  os.path.exists(join(pathManyBug, manybug, 'patched')):
+                shutil.rmtree(join(pathManyBug, manybug, 'patched'))
+
+                os.mkdir(join(pathManyBug, manybug, 'patched'))
+            else:
+                os.mkdir(join(pathManyBug, manybug, 'patched'))
+
+            bug, fix = manybug.split(':')[-1].split('-')[-2:]
+            files = get_filepaths(join(pathManyBug, manybug,'diffs'), bug)
+            sources = [i for i in files if not i.endswith('oracle.c')]
+
+
+            for src in sources:
+                # srcPath = src.replace('/diffs/','/src/')
+                srcPath = src
+                patchName = src.split('/')[-1]
+                for spfile in spfiles:
+                     cmd = COCCI_PATH + ' --sp-file ' + join(DATASET,'cocci',spfile) + ' ' + srcPath + ' --patch -o' + join(pathManyBug,manybug,'patches',patchName) + ' > ' + join(pathManyBug, manybug, 'patches', patchName + spfile + '.txt')
+                     # cmd = COCCI_PATH + ' --sp-file ' + join(DATASET,'cocci',spfile) + ' ' + srcPath + ' -o ' + join(DATA_PATH,"introclass",manybug,'patches',patchName+spfile+'.txt')
+                     t = cmd,manybug,patchName,spfile,srcPath
+                     workList.append(t)
+    except Exception as e:
+        logging.error(e)
+    parallelRun(cocciCore,workList)
+
+
+def exportSosPatches():
+    pathManyBug = join(DATA_PATH, "manybugs")
+    pathManyBugSos = join(DATA_PATH, "manybugs_sos")
+    manybugs = listdir(pathManyBug)
+    manybugs = [i for i in manybugs if i in sosbugs]
+
+    for manybug in manybugs:
+        # shutil.copytree(join(pathManyBug,manybug,'patched'),join(pathManyBugSos,manybug,'patched'))
+        shutil.copytree(join(pathManyBug,manybug,'patches'),join(pathManyBugSos,manybug,'patches'))
+
+def patched():
+    pathManyBug = join(DATA_PATH, "manybugs")
+    manybugs = listdir(pathManyBug)
+    manybugs = [i for i in manybugs if i in sosbugs]
+    # spfiles = listdir(join(DATASET,'cocci'))
+    workList = []
+    for manybug in manybugs:
+        if manybug == '.DS_Store':
+            continue
+        # files = listdir(join(join(DATA_PATH,"manybugs",manybug,'diffs')))
+        if  os.path.exists(join(DATA_PATH, "manybugs_patched", manybug, 'patches')):
+            shutil.rmtree(join(DATA_PATH, "manybugs_patched", manybug, 'patches'))
+
+            os.makedirs(join(DATA_PATH, "manybugs_patched", manybug, 'patches'))
+        else:
+            os.makedirs(join(DATA_PATH, "manybugs_patched", manybug, 'patches'))
+        files = get_filepaths(join(DATA_PATH, "manybugs", manybug), '.c')
+        sources = [i for i in files if not i.endswith('oracle.c')]
+
+        bug, fix = manybug.split(':')[-1].split('-')[-2:]
+        files = get_filepaths(join(pathManyBug, manybug, 'diffs'), bug)
+        sources = [i for i in files if not i.endswith('oracle.c')]
+
+        for src in sources:
+            # srcPath = src.replace('/diffs/','/src/')
+            srcPath = src
+            patchName = src.split('/')[-1]
+            spfiles = listdir(join(DATA_PATH,"manybugs",manybug,'patches'))
+            for spfile in spfiles:
+                 spfile =spfile.replace(patchName,'').replace('.txt','')
+                 cmd = COCCI_PATH + ' --sp-file ' + join(DATASET,'cocci',spfile) + ' ' + srcPath + ' -o ' + join(DATA_PATH,"manybugs_patched",manybug,'patches',patchName+spfile+'.c')
+                 t = cmd,manybug,patchName,spfile
+                 workList.append(t)
+    parallelRun(cocciCore,workList)
\ No newline at end of file
diff --git a/python/patch_validate.py b/python/patch_validate.py
new file mode 100755
index 0000000..708597a
--- /dev/null
+++ b/python/patch_validate.py
@@ -0,0 +1,509 @@
+import bugzoo
+from bugzoo import server, Container
+import csv
+import os
+from common.commons import *
+DATA_PATH = os.environ["DATA_PATH"]
+
+def readTestSuite(testPath):
+    regex = r"([p|n0-9]+)\)"
+    with open(testPath,mode='r') as testFile:
+        test_str = testFile.read()
+    matches = re.finditer(regex, test_str, re.MULTILINE)
+
+    testList = []
+    for matchNum, match in enumerate(matches, start=1):
+
+         for groupNum in range(0, len(match.groups())):
+            groupNum = groupNum + 1
+            testList.append(match.group(groupNum))
+    return testList
+def myvalidateCore(t):
+    bugName, port = t
+    container = None
+    with bugzoo.server.ephemeral(port=port, verbose=False, timeout_connection=30000) as client:
+        try:
+
+            bug = client.bugs[bugName]
+            if client.bugs.is_installed(bug):
+                pass
+            else:
+                client.bugs.build(bug)
+            fix = 'failure'
+            output = ''
+            output += 'bugName:' + bugName + ', '
+            container = client.containers.provision(bug)
+            # output += 'First_test:'
+
+            preId, postId = bugName.split(':')[-1].split('-')[-2:]
+            originalBugs = get_filepaths(join(DATA_PATH, 'manybugs', bugName, 'diffs'), preId)
+            # for ob in originalBugs:
+            #     filepath = ob.split('diffs')[-1]
+            #     cmd = 'cp /experiment/diffs' + filepath + ' src' + filepath.replace('-' + preId, '')
+            #     client.containers.exec(container=container, command=cmd, context='/experiment/')
+
+            validTests = readTestSuite(join(DATA_PATH, 'manybugs', bugName, 'test.sh'))
+            output += 'total ' +  str(len(bug.tests._tests)) + ' newtotal ' + str(len(validTests))
+            # client.containers.build(container)
+            # pre_failure_cases, pre_failure, total, pre_test_outcomes = test_all(bug, container, client,validTests)
+            # if pre_failure == 0:
+            #     logging.error(bugName + ' no failed test initially')
+            #     return ''
+            # output += '@fail:' + ','.join(pre_failure) + '@total:' + str(total) + ', ' + '@newtotal:' + str(len(validTests)) + ', '
+            #
+            # fixBugs = get_filepaths(join(DATA_PATH, 'manybugs', bugName, 'diffs'), postId)
+            # for ob in fixBugs:
+            #     filepath = ob.split('diffs')[-1]
+            #     cmd = 'cp /experiment/diffs' + filepath + ' src' + filepath.replace('-' + postId, '')
+            #     client.containers.exec(container=container, command=cmd, context='/experiment/')
+            # client.containers.build(container)
+            # diff_files = get_diff(bug.name, client, container)
+            # patch_result = patch_application(client, container, diff_files)
+            # if not patch_result:
+            #     print("@{}@".format(patch_result))
+            #     continue
+            # print("@{}@".format(patch_result),end=' ')
+            #
+            #
+            # print("Second_test:",end=' ')
+            # post_test_outcomes = {}
+            # post_failure_cases, post_failure, total, post_test_outcomes = test_all(bug, container, client,validTests)
+            # output += ','.join(post_failure) + ' '
+            # if len(post_failure) == 0:
+            #     # times += 1
+            #     fix = 'success'
+            #     # print("fix {} by {}".format(bugName, patch_name))
+            #     output += 'fix {}  '.format(bugName)
+
+
+            # patch_names = os.listdir(join(DATA_PATH,'manybugs',bugName,'patched'))
+            # patch_names = [i for i in patch_names if not i.endswith('.DS_Store')]
+            # if len(originalBugs) != 1:
+            #     members = []
+            #
+            #     for member in set([i.split('-')[0] for i in patch_names]):
+            #         members.append([i for i in patch_names if i.startswith(member)])
+            #
+            #     patch_names= list(itertools.product(*members))
+            #     patch_names
+            # times = 0
+            # for patch_name in patch_names:
+            #     if isinstance(patch_name, tuple):
+            #         for i in patch_name:
+            #             copyPatch(bugName, client, container, originalBugs, i, preId)
+            #     else:
+            #         copyPatch(bugName, client, container, originalBugs, patch_name, preId)
+            #
+            #     patch_result = client.containers.build(container)
+            #     if not patch_result.successful:
+            #         output += '@False@F '
+            #         continue
+            #     output += '@True@'
+            #
+            #     post_test_outcomes = {}
+            #     post_failure_cases, post_failure, total, post_test_outcomes = test_all(bug, container, client,validTests)
+            #
+            #     output += ','.join(post_failure) + ' '
+            #     if len(post_failure) == 0:
+            #         # times += 1
+            #         fix = 'success'
+            #         # print("fix {} by {}".format(bugName, patch_name))
+            #         output += 'fix {}  '.format(bugName)
+            #
+            # output += 'times:{}, '.format(times) + fix
+
+            print(output)
+            return output
+
+        except Exception as e:
+            logging.error(e)
+            # continue
+        finally:
+            # ''
+            cmd = 'docker stop {}'.format(container.id)
+            out, e = shellGitCheckout(cmd)
+            # docker stop $(docker ps -q)
+
+def validateCore(t):
+    bugName, port = t
+    container = None
+    with bugzoo.server.ephemeral(port=port, verbose=False, timeout_connection=30000) as client:
+        try:
+
+            bug = client.bugs[bugName]
+            if client.bugs.is_installed(bug):
+                pass
+            else:
+                client.bugs.build(bug)
+            fix = 'failure'
+            output = ''
+            output += 'bugName:' + bugName + ', '
+            container = client.containers.provision(bug)
+            output += 'First_test:'
+
+
+            preId, postId = bugName.split(':')[-1].split('-')[-2:]
+
+            failing = join(DATA_PATH, 'manybugs', bugName, 'failing.tests.txt')
+            passing = join(DATA_PATH, 'manybugs', bugName, 'passing.tests.txt')
+
+            if not (isfile(failing)):
+                return
+
+            cmd = 'docker cp ' +failing+ ' '+container.id +':/experiment/failing.tests.txt '
+            o,e = shellGitCheckout(cmd)
+            cmd = 'sudo chown $(whoami):$(whoami) "{}"'
+            cmd = cmd.format('failing.tests.txt')
+            o = client.containers.exec(container=container, command=cmd, context='/experiment/')
+            cmd = 'docker cp ' +passing+ ' '+container.id +':/experiment/passing.tests.txt '
+            o,e = shellGitCheckout(cmd)
+            cmd = 'sudo chown $(whoami):$(whoami) "{}"'
+            cmd = cmd.format('passing.tests.txt')
+            o = client.containers.exec(container=container, command=cmd, context='/experiment/')
+
+            originalBugs = get_filepaths(join(DATA_PATH, 'manybugs', bugName, 'diffs'), preId)
+            for ob in originalBugs:
+                filepath = ob.split('diffs')[-1]
+                cmd = 'cp diffs' + filepath + ' src' + filepath.replace('-' + preId, '')
+                client.containers.exec(container=container, command=cmd, context='/experiment/')
+
+            validTests = readTestSuite(join(DATA_PATH, 'manybugs', bugName, 'test.sh'))
+            client.containers.build(container)
+            pre_failure_cases, pre_failure, total, pre_test_outcomes = test_all(bug, container, client,validTests)
+            if pre_failure == 0:
+                logging.error(bugName + ' no failed test initially')
+                return ''
+            output += '@fail:' + ','.join(pre_failure) + '@total:' + str(total) + ', ' + '@newtotal:' + str(len(validTests)) + ', '
+
+            fixBugs = get_filepaths(join(DATA_PATH, 'manybugs', bugName, 'diffs'), postId)
+            for ob in fixBugs:
+                filepath = ob.split('diffs')[-1]
+                cmd = 'cp diffs' + filepath + ' src' + filepath.replace('-' + postId, '')
+                client.containers.exec(container=container, command=cmd, context='/experiment/')
+            client.containers.build(container)
+            # diff_files = get_diff(bug.name, client, container)
+            # patch_result = patch_application(client, container, diff_files)
+            # if not patch_result:
+            #     print("@{}@".format(patch_result))
+            #     continue
+            # print("@{}@".format(patch_result),end=' ')
+            #
+            #
+            # print("Second_test:",end=' ')
+            # post_test_outcomes = {}
+            post_failure_cases, post_failure, total, post_test_outcomes = test_all(bug, container, client,validTests)
+            output += ','.join(post_failure) + ' '
+            if len(post_failure) == 0:
+                # times += 1
+                fix = 'success'
+                # print("fix {} by {}".format(bugName, patch_name))
+                output += 'fix {}  '.format(bugName)
+
+
+            # patch_names = os.listdir(join(DATA_PATH,'manybugs',bugName,'patched'))
+            # patch_names = [i for i in patch_names if not i.endswith('.DS_Store')]
+            # if len(originalBugs) != 1:
+            #     members = []
+            #
+            #     for member in set([i.split('-')[0] for i in patch_names]):
+            #         members.append([i for i in patch_names if i.startswith(member)])
+            #
+            #     patch_names= list(itertools.product(*members))
+            #     patch_names
+            # times = 0
+            # for patch_name in patch_names:
+            #     if isinstance(patch_name, tuple):
+            #         for i in patch_name:
+            #             copyPatch(bugName, client, container, originalBugs, i, preId)
+            #     else:
+            #         copyPatch(bugName, client, container, originalBugs, patch_name, preId)
+            #
+            #     patch_result = client.containers.build(container)
+            #     if not patch_result.successful:
+            #         output += '@False@F '
+            #         continue
+            #     output += '@True@'
+            #
+            #     post_test_outcomes = {}
+            #     post_failure_cases, post_failure, total, post_test_outcomes = test_all(bug, container, client)
+            #
+            #     output += str(post_failure) + ' '
+            #     if post_failure == 0:
+            #         times += 1
+            #         fix = 'success'
+            #         output += 'fix {} by {} '.format(bugName, patch_name)
+            #
+            # output += 'times:{}, '.format(times) + fix
+
+            print(output)
+            return output
+
+        except Exception as e:
+            logging.error(e)
+            # continue
+        finally:
+            # ''
+            cmd = 'docker stop {}'.format(container.id)
+            out, e = shellGitCheckout(cmd)
+            # docker stop $(docker ps -q)
+
+
+def copyPatch(bugName, client, container, originalBugs, patch_name, preId):
+    originalBugName = patch_name.split('-' + preId)[0]
+    originalBugPaths = [i.split('diffs')[-1].split(originalBugName)[0] for i in originalBugs if
+                        i.split('/')[-1].startswith(originalBugName)]
+    if len(originalBugPaths) == 1:
+        originalBugPath = originalBugPaths[0]
+    else:
+        logging.error('too many paths')
+    cmd = 'docker cp ' + join(DATA_PATH, 'manybugs', bugName, 'patched',
+                              patch_name) + ' ' + container.id + ':/experiment/src' + originalBugPath + originalBugName
+    o, e = shellGitCheckout(cmd)
+    cmd = 'sudo chown $(whoami):$(whoami) "{}"'
+    cmd = cmd.format('src' + originalBugPath + originalBugName)
+    o = client.containers.exec(container=container, command=cmd, context='/experiment/')
+
+    cmd = 'rm -rf "{}"'
+    cmd = cmd.format('src' + originalBugPath + originalBugName.replace('.c','.o'))
+    o = client.containers.exec(container=container, command=cmd, context='/experiment/')
+
+
+def patch_validate():
+    logger = logging.getLogger()
+
+    for k,v in logger.manager.loggerDict.items():
+        if(k.startswith('bugzoo')):
+            if isinstance(v,logging.Logger):
+                v.setLevel(logging.ERROR)
+
+    buglist = listdir(join(DATA_PATH,'manybugs'))
+
+    # for i in range(0,len(bugList)):
+    bugList = []
+    port = 6000
+    for b in buglist:
+        if b== '.DS_Store':
+            continue
+        t = b, port
+        if (b.startswith('manybugs:php:')):
+            bugList.append(t)
+            if port == 6300:
+                port = 6000
+            port += 1
+    # bugList = [('manybugs:python:69783-69784', 6000)]
+    # bugList = [('manybugs:python:69709-69710', 6027)]
+    # bugList = [('manybugs:python:69223-69224', 6027)]
+    # bugList = [('manybugs:php:2012-02-25-c1322d2505-cfa9c90b20', 6027)]
+
+
+    # parallelRun(fixTests,bugList)
+    # parallelRun(findTests,bugList,max_workers=1)
+    results = parallelRunMerge(validateCore, bugList)
+    # #
+    with open(join(DATA_PATH, 'mayBugsValidateNew'), 'w',
+              encoding='utf-8') as writeFile:
+        # if levelPatch == 0:
+        writeFile.write('\n'.join(results))
+    # print(results)
+
+def findTests(t):
+    bugName, port = t
+    preId, postId = bugName.split(':')[-1].split('-')[-2:]
+
+    preTests= join(DATA_PATH, 'manybugs', bugName,'test-' + preId + '.out')
+    postTests  = join(DATA_PATH, 'manybugs', bugName,'test-' + postId + '.out')
+
+    with open(preTests,mode='r') as preTestFile:
+        preTestResults = preTestFile.read()
+
+    with open(postTests,mode='r') as postTestFile:
+        postTestResults = postTestFile.read()
+
+    preTestResults
+    preFails = findAllTests(r"FAIL .*\[(.*)\]", preTestResults)
+    prePasses = findAllTests(r"PASS .*\[(.*)\]", preTestResults)
+    postFails = findAllTests(r"FAIL .*\[(.*)\]", postTestResults)
+    postPasses = findAllTests(r"PASS .*\[(.*)\]", postTestResults)
+    existingTests = get_filepaths(join(DATA_PATH, 'manybugs', bugName, 'src'), '.phpt')
+    existingTests = [i.split(join(DATA_PATH, 'manybugs', bugName, 'src/'))[-1] for i in existingTests]
+    postPasses
+    if( set(preFails).difference(set(postFails)) == set(postPasses).difference(set(prePasses))):
+        failingList = list(set(preFails).difference(set(postFails)))
+
+        passingList = list(set(postPasses).intersection(set(prePasses)))
+
+        failingList = [i for i in failingList if i in existingTests]
+        passingList = [i for i in passingList if i in existingTests]
+        if( len(failingList) > 0 and len(passingList)> 0):
+            with open(join(DATA_PATH, 'manybugs', bugName, 'failing.tests.txt'),mode='w') as failFile:
+                failFile.write('\n'.join(failingList))
+            with open(join(DATA_PATH, 'manybugs', bugName, 'passing.tests.txt'),mode='w') as passFile:
+                passFile.write('\n'.join(passingList))
+        else:
+            print('something wrong ' + bugName)
+    else:
+        print('something wrong ' + bugName)
+
+
+
+
+def findAllTests(regex,test_str):
+    matches = re.finditer(regex, test_str, re.MULTILINE)
+    res = []
+    for matchNum, match in enumerate(matches, start=1):
+
+        # print("Match {matchNum} was found at {start}-{end}: {match}".format(matchNum=matchNum, start=match.start(),
+        #                                                                     end=match.end(), match=match.group()))
+
+        for groupNum in range(0, len(match.groups())):
+            groupNum = groupNum + 1
+            res.append(match.group(groupNum))
+            # print("Group {groupNum} found at {start}-{end}: {group}".format(groupNum=groupNum,
+            #                                                                 start=match.start(groupNum),
+            #                                                                 end=match.end(groupNum),
+            #                                                                 group=match.group(groupNum)))
+    return res
+
+def patch_validate_mine():
+    logger = logging.getLogger()
+
+    for k,v in logger.manager.loggerDict.items():
+        if(k.startswith('bugzoo')):
+            if isinstance(v,logging.Logger):
+                v.setLevel(logging.ERROR)
+
+    buglist = listdir(join(DATA_PATH,'manybugs'))
+
+    # for i in range(0,len(bugList)):
+    bugList = []
+    port = 6000
+    for b in buglist:
+        if b== '.DS_Store':
+            continue
+        t = b, port
+        bugList.append(t)
+        if port == 6300:
+            port = 6000
+        port += 1
+    # bugList = [('manybugs:python:69783-69784', 6000)]
+    # bugList = [('manybugs:python:69709-69710', 6027)]
+    # bugList = [('manybugs:python:69223-69224', 6027)]
+    results = parallelRunMerge(myvalidateCore, bugList,max_workers=12)
+
+    with open(join(DATA_PATH, 'mayBugsPatchResults'), 'w',
+              encoding='utf-8') as writeFile:
+        # if levelPatch == 0:
+        writeFile.write('\n'.join(results))
+    print(results)
+
+
+
+from bugzoo import Patch, Client
+
+def test_all(bug, container,  client,validTests):
+    test_outcomes = {}  # type: Dict[TestCase, TestOutcome]
+    failure_cases = []
+    failure = []
+    total = len(bug.tests._tests)
+    for test in bug.tests:
+        # if test.name in validTests:
+        test_outcomes[test] = client.containers.test(container, test)
+        # if test.expected_outcome != test_outcomes[test].passed:
+        if test_outcomes[test].passed != True:
+            failure.append(test.name)
+            failure_cases.append(test.command)
+            break
+    return failure_cases, failure, total, test_outcomes
+
+
+def fixTests(t):
+    bugName, port = t
+    container = None
+    with bugzoo.server.ephemeral(port=port, verbose=False, timeout_connection=30000) as client:
+        try:
+
+            bug = client.bugs[bugName]
+            if client.bugs.is_installed(bug):
+                pass
+            else:
+                client.bugs.build(bug)
+
+            container = client.containers.provision(bug)
+            preId, postId = bugName.split(':')[-1].split('-')[-2:]
+
+            cmd = 'make distclean'
+            o = client.containers.exec(container=container, command=cmd, context='/experiment/src')
+
+            cmd = 'git reset --hard && git clean -fd'
+            o = client.containers.exec(container=container, command=cmd, context='/experiment/src')
+
+            cmd = 'git checkout "{}"'.format(preId)
+            o = client.containers.exec(container=container, command=cmd, context='/experiment/src')
+            cmd ='cat ../libxml.patch | patch -p0'
+            o = client.containers.exec(container=container, command=cmd, context='/experiment/src')
+
+            cmd = 'find . -name tests -type d -exec git checkout {} {{}} \;'.format(postId)
+            o = client.containers.exec(container=container, command=cmd, context='/experiment/src')
+
+            cmd ='./buildconf'
+            o = client.containers.exec(container=container, command=cmd, context='/experiment/src')
+            if preId in ['74343ca506', '8138f7de40']:
+                cmd ='./configure --disable-phar "CFLAGS=-fprofile-arcs -ftest-coverage" "CXXFLAGS=-fprofile-arcs -ftest-coverage" "LDFLAGS=-lgcov"'
+            else:
+                cmd = './configure "CFLAGS=-fprofile-arcs -ftest-coverage" "CXXFLAGS=-fprofile-arcs -ftest-coverage" "LDFLAGS=-lgcov"'
+            o = client.containers.exec(container=container, command=cmd, context='/experiment/src')
+
+            cmd = 'make -j{}'.format(4)
+            o = client.containers.exec(container=container, command=cmd, context='/experiment/src')
+
+            cmd = 'no | make test -s > ../test-'+preId+'.out'
+            o = client.containers.exec(container=container, command=cmd, context='/experiment/src')
+            ###
+
+            cmd = 'make distclean'
+            o = client.containers.exec(container=container, command=cmd, context='/experiment/src')
+
+            cmd = 'git reset --hard && git clean -fd'
+            o = client.containers.exec(container=container, command=cmd, context='/experiment/src')
+
+            cmd = 'git checkout "{}"'.format(postId)
+            o = client.containers.exec(container=container, command=cmd, context='/experiment/src')
+            cmd = 'cat ../libxml.patch | patch -p0'
+            o = client.containers.exec(container=container, command=cmd, context='/experiment/src')
+
+            cmd = './buildconf'
+            o = client.containers.exec(container=container, command=cmd, context='/experiment/src')
+            if preId in ['74343ca506', '8138f7de40']:
+                cmd = './configure --disable-phar "CFLAGS=-fprofile-arcs -ftest-coverage" "CXXFLAGS=-fprofile-arcs -ftest-coverage" "LDFLAGS=-lgcov"'
+            else:
+                cmd = './configure "CFLAGS=-fprofile-arcs -ftest-coverage" "CXXFLAGS=-fprofile-arcs -ftest-coverage" "LDFLAGS=-lgcov"'
+            o = client.containers.exec(container=container, command=cmd, context='/experiment/src')
+
+            cmd = 'make -j{}'.format(4)
+            o = client.containers.exec(container=container, command=cmd, context='/experiment/src')
+
+            cmd = 'no | make test -s > ../test-' + postId + '.out'
+            o = client.containers.exec(container=container, command=cmd, context='/experiment/src')
+
+            cmd = 'docker cp ' + container.id +':/experiment/test-'+preId+'.out ' + join(DATA_PATH,'manybugs',bugName,'test-'+preId+'.out')
+            o,e = shellGitCheckout(cmd)
+            print(o, e)
+            cmd = 'docker cp ' + container.id +':/experiment/test-'+postId+'.out ' +join(DATA_PATH,'manybugs',bugName,'test-'+postId+'.out')
+            o,e = shellGitCheckout(cmd)
+
+            print(o,e)
+
+
+
+
+        except Exception as e:
+            logging.error(e)
+            # continue
+        finally:
+            # ''
+            cmd = 'docker stop {}'.format(container.id)
+            out, e = shellGitCheckout(cmd)
+            # docker stop $(docker ps -q)
+
+if __name__ == "__main__":
+    patch_validate()
diff --git a/python/patch_validate_introClass.py b/python/patch_validate_introClass.py
new file mode 100755
index 0000000..f6f2e46
--- /dev/null
+++ b/python/patch_validate_introClass.py
@@ -0,0 +1,125 @@
+import bugzoo
+from bugzoo import server, Container
+import csv
+import os
+
+introClassFile = './data/introClassData.txt'
+
+def patch_validate():
+    with bugzoo.server.ephemeral(port=8081,verbose=True,timeout_connection=3000) as client:
+        # url = "http://127.0.0.1:6060"
+        # client = bugzoo.Client(url)
+        # bug = client.bugs['introclass:checksum:08c7ea:006']
+        bugList = []
+        with open(introClassFile,'r') as file:
+            for line in file.readlines():
+                bugList.append(line.strip())
+
+        for i in range(0,len(bugList)):
+            try:
+                bugName = bugList[i]
+                # if bugName != 'introclass:digits:070455:000':
+                #     continue
+                print("bugName: {}".format(bugName),end=' ')
+                bug = client.bugs[bugName]
+                if client.bugs.is_installed(bug):
+                    # print("the image is installed! :-)")
+                    pass
+                else:
+                    client.bugs.build(bug)
+                    # client.bugs.download(bug)
+                    # print("the image is not installed :'(")
+
+                # print("creating container...")
+                container = client.containers.provision(bug)
+                # print("container is ready")
+
+                print("First_test:",end=' ')
+                pre_test_outcomes = {}
+                pre_failure_cases, pre_failure, total, pre_test_outcomes = test_all(bug, container, client)
+                print("@fail:{}@total:{}".format(pre_failure, total),end=' ')
+                print("@pre_failure_cases:{}".format(pre_failure_cases),end=' ')
+
+                # print("patching...")
+                diff_files = get_diff(bug.name, client, container)
+                patch_result = patch_application(client, container, diff_files)
+                if not patch_result:
+                    print("@{}@".format(patch_result))
+                    continue
+                print("@{}@".format(patch_result), end=' ')
+
+                print("Second_test:",end=' ')
+                post_test_outcomes = {}
+                post_failure_cases, post_failure, total, post_test_outcomes = test_all(bug, container, client)
+                print("@fail:{}@total:{}".format(post_failure, total),end=' ')
+                print("@post_failure_cases:{}".format(post_failure_cases))
+            except:
+                print(" ")
+                continue
+        pass
+
+from bugzoo import Patch, Client
+
+def test_all(bug, container,  client):
+    test_outcomes = {}  # type: Dict[TestCase, TestOutcome]
+    failure_cases = []
+    failure = 0
+    total = len(bug.tests._tests)
+    for test in bug.tests:
+        test_outcomes[test] = client.containers.test(container, test)
+        # if test.expected_outcome != test_outcomes[test].passed:
+        if test_outcomes[test].passed != True:
+            failure += 1
+            failure_cases.append(test.command)
+            break
+    return failure_cases, failure, total, test_outcomes
+
+def get_diff(bug, client, container):
+    patch_list = []
+    path = './data/introclass/' + bug
+    for root, dirs, files in os.walk(path):
+        for name in files:
+            if name.endswith('.patch'):
+                patch_list.append(os.path.join(root, name))
+
+    diff_files = []
+    for patch_file in patch_list:
+        unidiff = ''
+        with open(patch_file,'r') as file:
+            for line in file.readlines():
+                if line.startswith('\\'):
+                    continue
+                elif line.startswith('---'):
+                    unidiff += '--- ' + bug.split(':')[1] + '.c\n'
+                elif line.startswith('+++'):
+                    unidiff += '+++ ' + bug.split(':')[1] + '.c\n'
+                else:
+                    unidiff += line
+            diff_files.append(unidiff.strip())
+
+    return diff_files
+
+
+
+def patch_application(client: Client, container: Container, diff_files: list) -> None:
+    result = None
+    for unidiff in diff_files:
+        if len(unidiff) < 5:
+            continue
+        # first, we build a Patch object using a unified-format diff
+        patch = Patch.from_unidiff(unidiff)
+
+        # we then attempt to apply the patch to the source code
+        re = client.containers.patch(container, patch)
+        if not re:
+            return False
+        else:
+            result = True
+    # finally, we rebuild the program inside the container
+    client.containers.build(container)
+
+    return result
+
+
+if __name__ == "__main__":
+    patch_validate()
diff --git a/python/patch_validate_introClass2.py b/python/patch_validate_introClass2.py
new file mode 100755
index 0000000..6f64c05
--- /dev/null
+++ b/python/patch_validate_introClass2.py
@@ -0,0 +1,145 @@
+import bugzoo
+from bugzoo import server, Container
+from common.commons import *
+
+from common.commons import shellGitCheckout
+DATA_PATH = os.environ["DATA_PATH"]
+introClassFile = join(DATA_PATH,'introClassData.txt')
+
+def patch_validate():
+    with bugzoo.server.ephemeral(port=8081,verbose=True,timeout_connection=3000) as client:
+        # url = "http://127.0.0.1:6060"
+        # client = bugzoo.Client(url)
+        # bug = client.bugs['introclass:checksum:08c7ea:006']
+        bugList = []
+        with open(introClassFile,'r') as file:
+            for line in file.readlines():
+                bugList.append(line.strip())
+
+        for i in range(0,len(bugList)):
+            try:
+                bugName = bugList[i]
+                # if bugName != 'introclass:digits:070455:000':
+                #     continue
+                print("bugName: {}".format(bugName),end=' ')
+                bug = client.bugs[bugName]
+                if client.bugs.is_installed(bug):
+                    # print("the image is installed! :-)")
+                    pass
+                else:
+                    client.bugs.build(bug)
+                    # client.bugs.download(bug)
+                    # print("the image is not installed :'(")
+
+                # print("creating container...")
+                container = client.containers.provision(bug)
+                # print("container is ready")
+
+                print("First_test:",end=' ')
+                pre_test_outcomes = {}
+                pre_failure_cases, pre_failure, total, pre_test_outcomes = test_all(bug, container, client)
+                print("@fail:{}@total:{}".format(pre_failure, total),end=' ')
+                print("@pre_failure_cases:{}".format(pre_failure_cases),end=' ')
+
+                # print("patching...")
+                path = os.path.abspath('data') + '/introclass_patched/' + bugName
+                patch_path = path + '/patches'
+                avaliable_patch = os.path.abspath('data') + '/introclass2/' + bugName + '/' + 'patches'
+                patch_names = os.listdir(patch_path)
+                for patch_name in patch_names:
+                    # if patch_name not in os.listdir(avaliable_patch):
+                    #     continue
+                    patch = patch_path + '/' + patch_name
+                    patch_result = patched_application(path, bug.name, patch, client, container)
+                    if patch_result == -1 or patch_result.code != 0:
+                        print("@{}@".format('False'), end='')
+                        print("{}".format('F'), end=' ')
+                        continue
+                    print("@{}@".format('True'), end='')
+
+                    print("Second_test:",end=' ')
+                    post_test_outcomes = {}
+                    post_failure_cases, post_failure, total, post_test_outcomes = test_all(bug, container, client)
+                    print("{}".format(post_failure), end=' ')
+                    if post_failure == 0:
+                        print("fix {} by {}".format(bugName, patch_name))
+                    # print("@fail:{}@total:{}".format(post_failure, total),end=' ')
+                    # print("@post_failure_cases:{}".format(post_failure_cases))
+
+                cmd = 'docker rm -fv {}'.format(container.id)
+                output, e = shellGitCheckout(cmd)
+                print(" ")
+            except:
+                print(" ")
+                continue
+        pass
+
+from bugzoo import Patch, Client
+
+def test_all(bug, container,  client):
+    test_outcomes = {}  # type: Dict[TestCase, TestOutcome]
+    failure_cases = []
+    failure = 0
+    total = len(bug.tests._tests)
+    for test in bug.tests:
+        test_outcomes[test] = client.containers.test(container, test)
+        # if test.expected_outcome != test_outcomes[test].passed:
+        if test_outcomes[test].passed != True:
+            failure += 1
+            failure_cases.append(test.command)
+            break
+    return failure_cases, failure, total, test_outcomes
+
+def patch_application(path, bugName, patch, client: Client, container: Container):
+    buggroup = bugName.split(":")[1]
+    # path = join(BUGDIR,bug)
+    program = path + '/' + buggroup + '.c'
+    fixedFile = path + '/oracle.c'
+    patchPath = patch
+    with open(patch, 'r+', encoding='utf-8') as file:
+        result = ''
+        for line in file:
+            if line.startswith('---'):
+                # result += '--- ' + program + '\n'
+                result += '--- ' + buggroup + '.c' + '\n'
+            elif line.startswith('+++'):
+                # result += '+++ ' + fixedFile + '\n'
+                result += '+++ ' + 'oracle.c' + '\n'
+            else:
+                result += line
+    with open(patch, 'w', encoding='utf-8') as file:
+        file.writelines(result)
+
+    cmd = 'rm  ' + fixedFile
+    output, e = shellGitCheckout(cmd)
+
+    cmd = 'patch --ignore-whitespace -p0 < ' + '\"' + patchPath + '\"'
+    # cmd = 'patch  -p0 < ' + '\"' + patchPath + '\"'
+    output, e = shellGitCheckout(cmd)
+
+    if os.path.exists(fixedFile):
+        cmd = 'docker cp ' + fixedFile + ' ' + container.id + ':/experiment/'
+        output, e = shellGitCheckout(cmd)
+
+        cmd = 'rm .genprog_test_cache.json & gcc -o {} {}.c'.format(buggroup, 'oracle')
+        output = client.containers.exec(container=container, command=cmd, context='/experiment/')
+        return output
+    else:
+        return -1
+
+def patched_application(path, bugName, patched, client: Client, container: Container):
+    buggroup = bugName.split(":")[1]
+    # path = join(BUGDIR,bug)
+    program = path + '/' + buggroup + '.c'
+    fixedFile = patched.split('/')[-1]
+
+    cmd = 'docker cp ' + patched + ' ' + container.id + ':/experiment/'
+    output, e = shellGitCheckout(cmd)
+
+    cmd = 'rm .genprog_test_cache.json & mv {} {}.c & gcc -o {} {}'.format(fixedFile,fixedFile, buggroup, fixedFile+'.c')
+    output = client.containers.exec(container=container, command=cmd, context='/experiment/')
+    return output
+
+
+if __name__ == "__main__":
+    patch_validate()
diff --git a/python/sprinferIndex.py b/python/sprinferIndex.py
new file mode 100644
index 0000000..fae3f6d
--- /dev/null
+++ b/python/sprinferIndex.py
@@ -0,0 +1,454 @@
+from common.commons import *
+DATA_PATH = os.environ["DATA_PATH"]
+SPINFER_PATH = os.environ["spinfer"]
+
+SPINFER_INDEX_PATH = os.environ["dataset"]
+COCCI_PATH = join(os.environ["coccinelle"],'spatch')
+DATASET = os.environ["dataset"]
+
+
+def indexCore():
+
+    print(SPINFER_INDEX_PATH)
+    # dbDir = join(DATA_PATH, 'redis')
+    # startDB(dbDir, "6399", "ALLdumps-gumInput.rdb")
+    # import redis
+    # redis_db = redis.StrictRedis(host="localhost", port=6399, db=0)
+    # keys = redis_db.hkeys("dump")#hkeys "dump"
+    # # keys = redis_db.scan(0, match='*', count='1000000')
+    #
+    # matches = pd.DataFrame(keys, columns=['pairs_key'])
+    #
+    # # matches = load_zipped_pickle(join(DATA_PATH,'singleHunks'))
+    # matches['pairs_key'] = matches['pairs_key'].apply(lambda x: x.decode())
+    # matches['root'] = matches['pairs_key'].apply(lambda x: x.split('/')[0])
+    # matches['size'] = matches['pairs_key'].apply(lambda x: x.split('/')[1])
+    # matches['file'] = matches['pairs_key'].apply(lambda x: x.split('/')[2])
+    # matches['hunk'] = matches['pairs_key'].apply(lambda x: x.split('/')[2].split('_')[-1])
+    # matches['fileName'] = matches['pairs_key'].apply(lambda x: '_'.join(x.split('/')[2].split('_')[:-1]))
+    # test = matches[['fileName', 'hunk']]
+    # df = test.groupby(by=['fileName'], as_index=False).agg(lambda x: x.tolist())
+    # # sDF = df[df.hunk.apply(lambda x: True if x == ['0'] else False)]
+    # sDF = df[df.hunk.apply(lambda x: True if len(x)<10005 else False)]
+    # singleHunkedFiles = sDF.fileName.unique().tolist()
+    # singleHunkedFiles = [i.replace('.txt', '') for i in singleHunkedFiles]
+
+    clusterPath = join(DATA_PATH, 'shapes')
+    roots = listdir(clusterPath)
+    roots = [i for i in roots if not (i.startswith('.') or i.endswith('.pickle'))]
+
+
+    for root in roots:
+        root
+        sizes = listdir(join(clusterPath,root))
+        sizes = [f for f in sizes if not f.startswith('.')]
+        for size in sizes:
+
+            # actions = listdir(join(clusterPath,root,size))
+            # for action in actions:
+                clusters = listdir(join(clusterPath,root,size))
+                clusters = [f for f in clusters if not f.startswith('.')]
+                for cluster in clusters:
+                    members = listdir(join(clusterPath,root,size,cluster))
+                    members= [f for f in members if not f.startswith('.')]
+                    # members = [re.sub('^linux_','',i) for i in members]
+
+                    # csMembers = {}
+                    # for j in [i.split('.txt_') for i in members]:
+                    #     k,v = j
+                    #     k = k +'.txt'
+                    #     if k in csMembers:
+                    #         tmp = csMembers[k]
+                    #         tmp.append(v)
+                    #         csMembers[k] = tmp
+                    #     else:
+                    #         csMembers[k] = [v]
+                    #
+                    # splitMembers = []
+                    # for k,v in csMembers.items():
+                    #     hunks = df[df.fileName == k].iloc[0].hunk
+                    #     if set(hunks) == set(v):
+                    #         splitMembers.append(k)
+
+
+                    members = [re.sub('\.txt\_\d+','',i) for i in members]
+                    members = list(set(members))
+                    # members = [i for i in members if i in singleHunkedFiles or i in splitMembers]
+                    if len(members) > 1:
+                            lines = []
+                            for member in members:
+                                split =member.split('_')
+                                pj = split[0]
+                                member ='_'.join(split[1:])
+                                line = pj+'/prevFiles/prev_' + member + ' ' + pj+'/revFiles/' + member + '\n'
+                                lines.append(line)
+
+                            if len(lines)>0:
+                                with open(join(SPINFER_INDEX_PATH, root+"_"+size +'_'+cluster+'.index'), 'w', encoding='utf-8') as writeFile:
+                                    # if levelPatch == 0:
+                                    writeFile.write(''.join(lines))
+
+
+
+def test():
+    indexes = listdir(SPINFER_INDEX_PATH)
+    indexes = [i for i in indexes if i.endswith('.index')]
+    coccis = listdir(join(SPINFER_INDEX_PATH,'cocci'))
+
+    if not os.path.exists(join(SPINFER_INDEX_PATH,'indexNC')):
+        os.mkdir(join(SPINFER_INDEX_PATH,'indexNC'))
+
+    for i in indexes:
+        if re.sub('\.index', '.cocci', i) not in coccis:
+            shutil.move(join(SPINFER_INDEX_PATH,i),join(SPINFER_INDEX_PATH,'indexNC',i))
+
+
+def runSpinfer():
+    indexCore()
+    indexes = listdir(SPINFER_INDEX_PATH)
+    indexes = [i for i in indexes if i.endswith('.index')]
+    # indexes = ['if_9_44.index']
+    if not os.path.exists(join(SPINFER_INDEX_PATH,'cocci')):
+        os.mkdir(join(SPINFER_INDEX_PATH,'cocci'))
+    os.chdir(SPINFER_INDEX_PATH)
+    pairs = []
+    for i in indexes:
+        pairs.append((os.path.getsize(i),i))
+    pairs.sort(key=lambda s:s[0])
+
+    coccis = listdir(join(SPINFER_INDEX_PATH,'cocci'))
+
+    cmdList = []
+    bigCmdList = []
+    for t in pairs:
+        sizes, idx = t
+        cocciName = re.sub('\.index', '.cocci', idx)
+        if cocciName in coccis:
+            continue
+        # cmd = SPINFER_PATH + " --no-progress -f " + idx + " -o cocci/" + cocciName
+        # bigCmdList.append(cmd)
+        if sizes < 500:
+        #     #cmd = SPINFER_PATH + " -j 16 -f " + idx + " -o cocci/" + re.sub('\.index', '.cocci', idx)
+        #     # cmd = SPINFER_PATH + " --no-progress --genericity 1 -j 16 -f " + idx + " -o cocci/" + cocciName
+            cmd = SPINFER_PATH + " --no-progress -f " + idx + " -o cocci/" + cocciName
+            cmdList.append(cmd)
+        else:
+        #     # cmd = SPINFER_PATH + " --no-progress --genericity 1 -j 1 -f " + idx + " -o cocci/" + cocciName
+            cmd = SPINFER_PATH + " --no-progress -f " + idx + " -o cocci/" + cocciName
+            bigCmdList.append(cmd)
+
+    # for cmd in cmdList:
+    #     logging.info(cmd)
+    #     output, e = shellGitCheckout(cmd)
+    #     logging.info(output)
+    parallelRun(callSpinfer,cmdList)
+    # logging.info('big commands')
+    # for cmd in bigCmdList:
+    #     #     logging.info(cmd)
+    #     #     output, e = shellGitCheckout(cmd)
+    #     #     logging.info(output)
+    parallelRun(callSpinfer,bigCmdList)
+
+    # if not os.path.exists(join(DATA_PATH,'cocci')):
+    #     os.mkdir(join(DATA_PATH,'cocci'))
+
+
+        # logging.info(cmd)
+        # output,e = shellGitCheckout(cmd)
+        # logging.info(output)
+
+def divideCoccis():
+    import datetime
+    shutil.copytree(join(SPINFER_INDEX_PATH,'cocci'),join(DATA_PATH,'cocci'+ datetime.datetime.now().strftime('%Y-%m-%d_%H-%M-%S')))
+
+    coccis =os.listdir(join(SPINFER_INDEX_PATH,'cocci'))
+    for cocci in coccis:
+        with open(join(SPINFER_INDEX_PATH,'cocci',cocci), 'r') as iFile:
+            idx = iFile.readlines()
+            idx
+        values = np.array(idx)
+        points = np.where(values == '@@\n')
+
+        points = list(itertools.chain.from_iterable(points))
+        if len(points) == 0:
+            os.remove(join(SPINFER_INDEX_PATH, 'cocci', cocci))
+        # patches = list(zip(*([iter(points)] * 2)))
+        patches = list(pairwise(points[::2]))# every second element in list
+        if len(patches) > 0:
+            i = 0;
+            for t in patches :
+                t
+                with open(join(SPINFER_INDEX_PATH, 'cocci', cocci+str(i)), 'w') as iFile:
+                    iFile.writelines(idx[t[0]:t[1]])
+                i=i+1
+            t
+            with open(join(SPINFER_INDEX_PATH, 'cocci', cocci + str(i)), 'w') as iFile:
+                iFile.writelines(idx[t[1]:])
+            os.remove(join(SPINFER_INDEX_PATH, 'cocci', cocci))
+
+def removeDuplicates():
+    commentPattern = r"(/\*([^*]|[\r\n]|(\*+([^*/]|[\r\n])))*\*+/)|(//.*)"
+    coccis =os.listdir(join(SPINFER_INDEX_PATH, 'cocci'))
+    cocciPatterns = pd.DataFrame(columns=['cid', 'pattern','inferedFrom'])
+    ind = 0
+    for cocci in coccis:
+        with open(join(SPINFER_INDEX_PATH, 'cocci', cocci), 'r') as iFile:
+            idx = iFile.read()
+            idx
+            inferedFrom = re.search(r"// Infered from:(.*)\n",idx).groups()
+            pattern = re.sub(commentPattern, '', idx, re.DOTALL)
+            cocciPatterns.loc[ind] = [cocci,pattern,inferedFrom]
+            ind = ind +1
+    cocciPatterns['iFiles'] = cocciPatterns.inferedFrom.apply(lambda x: getInferred(x[0]))
+
+
+    save_zipped_pickle(cocciPatterns,join(DATA_PATH,'allCocciPatterns.pickle'))
+    allPatterns = cocciPatterns.cid.values.tolist()
+    uniquePatterns = cocciPatterns.drop_duplicates(subset=['pattern']).cid.values.tolist()
+    toRemove = list(set(allPatterns).difference(uniquePatterns))
+    print(toRemove)
+    for p in toRemove:
+        os.remove(join(SPINFER_INDEX_PATH, 'cocci', p))
+    print(len(uniquePatterns))
+
+
+def filterPatterns():
+    cocciPatterns = load_zipped_pickle(join(DATA_PATH,'allCocciPatterns.pickle'))
+    cocciPatterns['filtered'] = cocciPatterns.iFiles.apply(lambda x: [i for i in x if  (
+                i.startswith('(libtiff') or i.startswith('(php-src') or i.startswith('(cpython'))])
+    return cocciPatterns[cocciPatterns.filtered.str.len() > 0].cid.values.tolist()
+
+def getInferred(x):
+    regex = r"\(.*?\)"
+    matches = re.finditer(regex, x)
+
+    results = []
+    for matchNum, match in enumerate(matches, start=1):
+        results.append(match.group())
+    return results
+
+
+def getNegLines(x):
+    negLines = r"^-(.*)"
+    matches = re.finditer(negLines, x, re.MULTILINE)
+    res = []
+    for matchNum, match in enumerate(matches, start=1):
+
+        for groupNum in range(0, len(match.groups())):
+            groupNum = groupNum + 1
+
+            # print("Group {groupNum} found at {start}-{end}: {group}".format(groupNum=groupNum,
+            #                                                                 start=match.start(groupNum),
+            #                                                                 end=match.end(groupNum),
+            #                                                                 group=match.group(groupNum)))
+            res.append(match.group(groupNum))
+    from common.preprocessing import getTokensForPatterns
+    tokens = getTokensForPatterns(res)
+
+    return tokens
+def patternOperations():
+    cocciPatterns = load_zipped_pickle(join(DATA_PATH, 'allCocciPatterns.pickle'))
+    # cocciPatterns.pattern.apply(lambda x:re.search(r"@@(.*)@@",x,re.DOTALL|re.M).groups())
+    cocciPatterns['patternTokens'] = cocciPatterns.pattern.apply(lambda x:getNegLines(x))
+    #set(getTokensForPatterns(lines)).intersection(set(tokens))
+    save_zipped_pickle(cocciPatterns,join(DATA_PATH, 'allCocciPatterns.pickle'))
+# import html
+# def getTokensForPatterns(res):
+#     if isinstance(res, list):
+#         merged = str()
+#         for r in res:
+#             if isinstance(r, list):
+#                 merged = merged + ' ' + ' '.join(r)
+#             else:
+#                 merged = merged +' ' + r
+#     else:
+#         merged=res
+#
+#     res = html.unescape(merged)
+#
+#     tokens = getTokens(res,False)
+#
+#     stripped = []
+#     for t in tokens:
+#         splits = re.split('\.|\(|\)|:|>|<|:|=|/|\\\\|\'|-|,|\]|\[|}|{|;',t)
+#         for s in splits:
+#             stripped.append(s)
+#     non_empty = [i for i in stripped if i != '']
+#     return non_empty
+# from nltk.tokenize import RegexpTokenizer
+#
+# def getTokens(re,printDetail=False):
+#     tokenizer = RegexpTokenizer(r'\S+')
+#     tokens = tokenizer.tokenize(re)
+#     if printDetail:
+#         print('=====TOKENS=========')
+#         print(tokens)
+#
+#     return tokens
+
+def filterCore(t):
+    # cocciPatterns = load_zipped_pickle(join(DATA_PATH, 'allCocciPatterns.pickle'))
+    src,spfile = t
+    srcPath = src
+    patchName = src.split('/')[-1]
+    manybug = src.split('/')[-2]
+    # with open(srcPath, mode='r') as srcFile:
+    #     lines = srcFile.read()
+    # scTokens = getTokensForPatterns(lines)
+
+    # tokens = cocciPatterns[cocciPatterns.cid == spfile].iloc[0].patternTokens
+    # patternFilter = set(scTokens).intersection(set(tokens))
+    # if len(patternFilter) > 0:
+    cmd = COCCI_PATH + ' --sp-file ' + join(DATASET, 'cocci', spfile) + ' ' + srcPath + ' --patch -o' + join(
+        DATA_PATH, "introclass", manybug, 'patches', patchName) + ' > ' + join(DATA_PATH, "introclass", manybug,
+                                                                               'patches',
+                                                                               patchName + spfile + '.txt')
+    # cmd = COCCI_PATH + ' --sp-file ' + join(DATASET,'cocci',spfile) + ' ' + srcPath + ' -o ' + join(DATA_PATH,"introclass",manybug,'patches',patchName+spfile+'.txt')
+    t = cmd, manybug, patchName, spfile, srcPath
+    return t
+    # return None
+
+
+def patchCoreIntro():
+
+
+    manybugs = listdir(join(DATA_PATH,"introclass"))
+    spfiles = listdir(join(DATASET,'cocci'))
+    # workList = []
+
+
+
+    filterList =[]
+    for manybug in manybugs:
+        # files = listdir(join(join(DATA_PATH,"manybugs",manybug,'diffs')))
+        if  os.path.exists(join(DATA_PATH, "introclass", manybug, 'patches')):
+            shutil.rmtree(join(DATA_PATH, "introclass", manybug, 'patches'))
+
+            os.mkdir(join(DATA_PATH, "introclass", manybug, 'patches'))
+        else:
+            os.mkdir(join(DATA_PATH, "introclass", manybug, 'patches'))
+
+        if  os.path.exists(join(DATA_PATH, "introclass", manybug, 'patched')):
+            shutil.rmtree(join(DATA_PATH, "introclass", manybug, 'patched'))
+
+            os.mkdir(join(DATA_PATH, "introclass", manybug, 'patched'))
+        else:
+            os.mkdir(join(DATA_PATH, "introclass", manybug, 'patched'))
+
+        files = get_filepaths(join(DATA_PATH, "introclass", manybug), '.c')
+        sources = [i for i in files if not (i.endswith('oracle.c.patch') or i.endswith('oracle.c'))]
+
+        filterList.extend(list(itertools.product(sources, spfiles)))
+    print(len(filterList))
+    workList = parallelRunMerge(filterCore,filterList)
+
+        # for src in sources:
+        #     # srcPath = src.replace('/diffs/','/src/')
+        #     srcPath = src
+        #
+        #
+        #     with open(srcPath, mode='r') as srcFile:
+        #         lines = srcFile.read()
+        #     scTokens = getTokensForPatterns(lines)
+        #
+        #     patchName = src.split('/')[-1]
+        #     for spfile in spfiles:
+        #          tokens = cocciPatterns[cocciPatterns.cid == spfile].iloc[0].patternTokens
+        #          patternFilter = set(scTokens).intersection(set(tokens))
+        #          if len(patternFilter) > 0:
+        #              cmd = COCCI_PATH + ' --sp-file ' + join(DATASET,'cocci',spfile) + ' ' + srcPath + ' --patch -o' + join(DATA_PATH,"introclass",manybug,'patches',patchName) + ' > ' + join(DATA_PATH, "introclass", manybug, 'patches', patchName + spfile + '.txt')
+        #              # cmd = COCCI_PATH + ' --sp-file ' + join(DATASET,'cocci',spfile) + ' ' + srcPath + ' -o ' + join(DATA_PATH,"introclass",manybug,'patches',patchName+spfile+'.txt')
+        #              t = cmd,manybug,patchName,spfile,srcPath
+        #              workList.append(t)
+        #          else:
+        #             logging.info("Skip "+ srcPath + " " + spfile)
+    workList = list(filter(None, workList))
+    print(len(workList))
+    # for l in workList:
+    #     cocciCore2(l)
+    parallelRun(cocciCore2,workList)
+
+def patched():
+    manybugs = listdir(join(DATA_PATH,"introclass"))
+    # spfiles = listdir(join(DATASET,'cocci'))
+    workList = []
+    for manybug in manybugs:
+        # files = listdir(join(join(DATA_PATH,"manybugs",manybug,'diffs')))
+        if  os.path.exists(join(DATA_PATH, "introclass_patched", manybug, 'patches')):
+            shutil.rmtree(join(DATA_PATH, "introclass_patched", manybug, 'patches'))
+
+            os.makedirs(join(DATA_PATH, "introclass_patched", manybug, 'patches'))
+        else:
+            os.makedirs(join(DATA_PATH, "introclass_patched", manybug, 'patches'))
+        files = get_filepaths(join(DATA_PATH, "introclass", manybug), '.c')
+        sources = [i for i in files if not (i.endswith('oracle.c.patch') or i.endswith('oracle.c'))]
+
+
+        for src in sources:
+            # srcPath = src.replace('/diffs/','/src/')
+            srcPath = src
+            patchName = src.split('/')[-1]
+
+
+            spfiles = listdir(join(DATA_PATH,"introclass",manybug,'patches'))
+            for spfile in spfiles:
+                 spfile =spfile.replace(patchName,'').replace('.txt','')
+                 cmd = COCCI_PATH + ' --sp-file ' + join(DATASET,'cocci',spfile) + ' ' + srcPath + ' -o ' + join(DATA_PATH,"introclass_patched",manybug,'patches',patchName+spfile+'.c')
+                 t = cmd,manybug,patchName,spfile
+                 workList.append(t)
+    parallelRun(cocciCore,workList)
+
+
+
+def cocciCore2(t):
+    cmd,manybug,patchName,spfile,srcPath = t
+    # cocciPatterns = load_zipped_pickle(join(DATA_PATH, 'allCocciPatterns.pickle'))
+    # tokens = cocciPatterns[cocciPatterns.cid == spfile].iloc[0].patternTokens
+    # with open(srcPath, mode='r') as srcFile:
+    #     lines = srcFile.read()
+
+    # patternFilter = set(getTokensForPatterns(lines)).intersection(set(tokens))
+    # if len(patternFilter) > 0:
+
+    # logging.info(cmd)
+    output, e = shellGitCheckout(cmd)
+    # logging.info(output)
+    patchSize = os.path.getsize(join(DATA_PATH,"introclass",manybug,'patches',patchName+spfile+'.txt'))
+    if patchSize == 0 :
+        os.remove(join(DATA_PATH,"introclass",manybug,'patches',patchName+spfile+'.txt'))
+    else:
+        cmd = 'patch -d '+join(DATA_PATH, "introclass", manybug)+' -i '+join(DATA_PATH,"introclass",manybug,'patches',patchName+spfile+'.txt')+' -o '+join(DATA_PATH,"introclass",manybug,'patched',patchName+spfile+'.c')
+        o,e = shellGitCheckout(cmd)
+
+def cocciCore(t):
+    cmd, manybug, patchName, spfile = t
+    # logging.info(cmd)
+    output, e = shellGitCheckout(cmd)
+    # logging.info(output)
+    patchSize = os.path.getsize(join(DATA_PATH,"introclass",manybug,'patches',patchName+spfile+'.txt'))
+    if patchSize == 0 :
+     os.remove(join(DATA_PATH,"introclass",manybug,'patches',patchName+spfile+'.txt'))
+# def patchCore():
+#     manybugs = listdir(join(DATA_PATH,"manybugs"))
+#     spfiles = listdir(join(DATASET,'cocci'))
+#     for manybug in manybugs:
+#         # files = listdir(join(join(DATA_PATH,"manybugs",manybug,'diffs')))
+#         if not os.path.exists(join(DATA_PATH, "manybugs", manybug, 'patches')):
+#             os.mkdir(join(DATA_PATH, "manybugs", manybug, 'patches'))
+#         if not os.path.exists(join(DATA_PATH, "manybugs", manybug, 'patched')):
+#             os.mkdir(join(DATA_PATH, "manybugs", manybug, 'patched'))
+#
+#         files = get_filepaths(join(DATA_PATH,"manybugs",manybug,'diffs'),'.patch')
+#         sources = [i.replace('.c.patch','.c') for i in files if i.endswith('.c.patch')]
+#         for src in sources:
+#             srcPath = src.replace('/diffs/','/src/')
+#             patchName = src.split('/')[-1]
+#             for spfile in spfiles:
+#                  cmd = COCCI_PATH + ' -j 16 --sp-file ' + join(DATASET,'cocci',spfile) + ' ' + srcPath + ' -o ' + join(DATA_PATH,"manybugs",manybug,'patches',patchName+spfile+'.txt')
+#                  logging.info(cmd)
+#                  output, e = shellGitCheckout(cmd)
+#                  logging.info(output)
+#                  patchSize = os.path.getsize(join(DATA_PATH,"manybugs",manybug,'patches',patchName+spfile+'.txt'))
+#                  if patchSize == 0 :
+#                      os.remove(join(DATA_PATH,"manybugs",manybug,'patches',patchName+spfile+'.txt'))
+
diff --git a/python/stats.py b/python/stats.py
new file mode 100644
index 0000000..17eedf3
--- /dev/null
+++ b/python/stats.py
@@ -0,0 +1,572 @@
+from common.commons import *
+DATA_PATH = os.environ["DATA_PATH"]
+PROJECT_TYPE = os.environ["PROJECT_TYPE"]
+
+def statsNormal(isFixminer=True):
+    # tokens = join(DATA_PATH, 'tokens')
+    # actions = join(DATA_PATH, 'actions')
+    import redis
+    redis_db = redis.StrictRedis(host="localhost", port=6399, db=0)
+    # keys = redis_db.scan(0, match='*', count='1000000')
+    keys = redis_db.hkeys("dump")  # hkeys "dump"
+    matches = pd.DataFrame(keys, columns=['pairs_key'])
+
+    # matches = load_zipped_pickle(join(DATA_PATH,'singleHunks'))
+    matches['pairs_key'] = matches['pairs_key'].apply(lambda x: x.decode())
+    matches['root'] = matches['pairs_key'].apply(lambda x: x.split('/')[0])
+    matches['size'] = matches['pairs_key'].apply(lambda x: x.split('/')[1])
+    matches['file'] = matches['pairs_key'].apply(lambda x: x.split('/')[2])
+    matches['repo'] = matches['file'].apply(lambda x: x.split('_')[0])
+    matches['commit'] = matches['file'].apply(lambda x: x.split('_')[1])
+    matches['hunk'] = matches['pairs_key'].apply(lambda x: x.split('/')[2].split('_')[-1])
+    matches['fileName'] = matches['pairs_key'].apply(lambda x: '_'.join(x.split('/')[2].split('_')[:-1]))
+    test = matches[['fileName','hunk']]
+    df = test.groupby(by=['fileName'], as_index=False).agg(lambda x: x.tolist())
+
+    # df = load_zipped_pickle('datasetGroupByHunk.pickle')
+    yList = []
+    colNames = []
+
+    def haveAll(x):
+        check = dict()
+        if len(x)<2:
+            return False
+        for hunk in x:
+            filename, hunkNo = hunk.rsplit('_',1)
+            if filename in check:
+                check[filename].append(hunkNo)
+            else:
+                check[filename] = [hunkNo]
+
+        tv = []
+        for k,v in check.items():
+            selected = df[df.fileName == k]
+            if tuple(selected.iloc[0].hunk) == tuple(v):
+                tv.append(True)
+            else:
+                tv.append(False)
+        result = np.all(tv)
+        return result
+
+    def combinationOfPatterns(x):
+        check = dict()
+        if len(x)<2:
+            return False
+        for hunk in x:
+            filename, hunkNo = hunk.rsplit('_',1)
+            if filename in check:
+                check[filename].append(hunkNo)
+            else:
+                check[filename] = [hunkNo]
+
+        tv = []
+
+        res = check.copy()
+        for k,v in check.items():
+            # if len(v) == 1:
+            #     res.pop(k,None)
+            selected = df[df.fileName == k]
+            if set(selected.iloc[0].hunk) != set(v):
+                res.pop(k, None)
+        # result = np.all(tv)
+        indices = [i for i, val in enumerate(tv) if val == True]
+        return res
+    allHunks = []
+    def test(x):
+        try:
+            fileList = []
+            for i in x:
+
+                fileName = i.rsplit('_', 1)[0]
+
+                if fileName in byCombi.keys():
+                    fileList.append(i)
+            if len(fileList) > 0:
+
+                if (set(fileList).issubset(set(x))):
+                    # logging.info("In the same pattern")
+                    allHunks.extend(fileList)
+                    return True
+                else:
+                  logging.info("Mix")
+            return False
+        except Exception as e:
+            logging.error(e)
+
+
+    # for type in ['tokens', 'actions', 'shapes']:
+    for type in ['shapes']:
+        statsS,clusterDF = stats(type,isFixminer)
+        if isFixminer:
+            clusterDF = clusterDF[clusterDF.members.str.len() > 1]
+
+            clusterDF['vertical'] = clusterDF.members.apply(lambda x:len(set([i.rsplit('_',1)[0] for i in x])) == 1)
+            clusterDF['v-h'] = clusterDF.members.apply(lambda x: len(set([i.rsplit('_', 1)[0] for i in x])))
+            clusterDF['ms'] = clusterDF.members.apply(lambda x: len(x))
+            clusterDF['horizontal'] = clusterDF.apply(lambda x: x['ms'] == x['v-h'] and x['v-h'] > 1, axis=1)
+
+
+
+            logging.info('Spread horizontal %d vertical %d',len(clusterDF[clusterDF['horizontal'] == True]),  len(clusterDF[clusterDF['vertical'] == True]))
+            logging.info('Spread patch horizontal %d vertical %d',clusterDF[clusterDF['horizontal'] == True]['v-h'].sum(),  clusterDF[clusterDF['vertical'] == True]['v-h'].sum())
+            logging.info('Spread hunks horizontal %d vertical %d',clusterDF[clusterDF['horizontal'] == True]['ms'].sum(),  clusterDF[clusterDF['vertical'] == True]['ms'].sum())
+
+        singlePatternAll= clusterDF[clusterDF.members.apply(lambda x:haveAll(x))]
+        singlePatterns = list(set(singlePatternAll.cid.values.tolist()))
+
+        # if type == 'actions':
+        #     print('\n'.join(singlePatterns))
+        hunks = set(itertools.chain.from_iterable(singlePatternAll.members.values.tolist()))
+        logging.info("Match every member Fix\n %s # bugs: %d , # hunks %d ,#patterns %d", type,len(set([re.split('.txt_[0-9]+', i)[0] for i in hunks])),
+                     len(hunks),
+                     len(singlePatternAll))
+        # nonEmpty = clusterDF[clusterDF.members.str.len() > 1]
+        allhunks =set(itertools.chain.from_iterable(clusterDF.members.values.tolist()))
+        byCombi = combinationOfPatterns(allhunks)
+
+
+        multiple =clusterDF[clusterDF.members.apply(lambda x:test(x))]
+        # print(len(multiple))
+        # print(set(multiple.cid.values.tolist()).difference(singlePatterns))
+
+        allHunks
+        logging.info("%d patterns can match %d bugs, %d hunks",len(multiple),len(set([re.split('.txt_[0-9]+', i)[0] for i in allHunks])), len(allHunks))
+        matches = pd.DataFrame(statsS, columns=['cluster', 'memberCount'])
+        matches.sort_values(by='memberCount', ascending=False, inplace=True)
+        matches
+        if isFixminer:
+            matches.to_csv(join(DATA_PATH, "stats" + type + ".csv"), index=False)
+            if type == 'actions':
+                clusterDF['ms'] = clusterDF.members.str.len()
+                clusterDF.sort_values(by='ms', ascending=False, inplace=True)
+                top50 = clusterDF.head(50)
+                top50['member'] = top50.members.apply(lambda x: x[0])
+                top50['cid'] = top50.cid.apply(lambda x: x[0])
+                top50['path'] = top50.apply(lambda x:x['cid'].replace('-','/')+'/'+x['member'],axis=1)
+                def readFile(x):
+                    with open(join(DATA_PATH,'actions',x), 'r', encoding='utf-8') as writeFile:
+                        lines = writeFile.read()
+                        return lines
+                        # if lines.startswith('UPD'):
+                        #     return lines
+                        # else:
+                        #     return ''
+                    # return lines
+
+                top50['pattern'] = top50.path.apply(lambda x:readFile(x))
+                top50[['cid','pattern']].to_csv('actionsPattern2verify.csv',index=False,header=None)
+
+
+
+
+
+
+
+
+        else:
+            matches.to_csv(join(DATA_PATH, "statsDefects4J" + type + ".csv"), index=False)
+        print(type, matches.memberCount.sum())
+        print(type, matches.memberCount.sum())
+        yList.append(matches.memberCount.values.tolist())
+        colNames.append(type)
+    # if isFixminer:
+    #     from common.commons import plotBox
+    #     plotBox(yList,colNames,'dist_clusterMembers.pdf',False,False)
+    # for i in range(2, 21):
+    #     print('%d %d %d' % (matches[matches.memberCount >= i].memberCount.sum(), len(matches[matches.memberCount >= i]),i))
+
+    # save_zipped_pickle(join(DATA_PATH,'statsShapes'))
+
+idx = 0
+def stats(type,isFixminer=True):
+    clustersDF = pd.DataFrame(columns=['cid', 'type', 'members'])
+
+
+    shapesPath = join(DATA_PATH, type)
+    shapes = listdir(shapesPath)
+    shapes = [f for f in shapes if isdir(join(shapesPath, f))]
+    shape = size = cluster = action = token = None
+
+    def statsCore(cs):
+        global idx
+        if isFixminer:
+            cs = [i for i in cs if not (
+                    i.startswith('commons-math') or i.startswith('commons-lang') or i.startswith(
+                'closure-compiler') or i.startswith('joda-time') or i.startswith('mockito') or i.startswith(
+                'jfreechart'))]
+        else:
+            cs = [i for i in cs if (
+                    i.startswith('commons-math') or i.startswith('commons-lang') or i.startswith(
+                'closure-compiler') or i.startswith('joda-time') or i.startswith('mockito') or i.startswith(
+                'jfreechart'))]
+        if size == '1':
+            return
+        # print('Cluster %s : member size %s' % (shape+"-"+size +"-"+cluster, len(cs)))
+        clusterSize = len(cs)
+        if token is None:
+            if action is None:
+                # clusterSize = len(cs)
+                # if clusterSize > 1:
+                #     clusterSize = len(set([re.split('.txt_[0-9]+', i)[0] for i in cs]))
+                t = shape + "-" + size + "-" + cluster, clusterSize
+                clustersDF.loc[idx] = [t, type, cs]
+                idx = idx + 1
+            else:
+                # clusterSize = len(cs)
+                # if clusterSize > 1:
+                #     clusterSize = len(set([re.split('.txt_[0-9]+', i)[0] for i in cs]))
+                t = shape + "-" + size + "-" + cluster + "-" + action, clusterSize
+                clustersDF.loc[idx] = [t, type, cs]
+                idx = idx + 1
+        else:
+            # clusterSize = len(cs)
+            # if clusterSize > 1:
+            #     clusterSize = len(set([re.split('.txt_[0-9]+', i)[0] for i in cs]))
+            t = shape + "-" + size + "-" + cluster + "-" + action + "-" + token, clusterSize
+            clustersDF.loc[idx] = [t, type, cs]
+            idx = idx + 1
+        # t = shape + "-" + size + "-" + cluster, len(cs)
+        # if len(cs)>0:
+        #     with open(join(shapesPath,t[0].replace('-','/'),cs[0]),'r') as pattern:
+        #         line = pattern.read()
+        #         if line.startswith('MOV') or line.startswith('DEL'):
+        #             t = t[0],0
+        if isFixminer:
+            if clusterSize > 1:
+                statsS.append(t)
+        else:
+            if clusterSize > 0:
+                statsS.append(t)
+
+    statsS = []
+    for shape in shapes:
+        if shape.startswith('.'):
+            continue
+        sizes = listdir(join(shapesPath, shape))
+
+        for size in sizes:
+            if size.startswith('.'):
+                continue
+            clusters = listdir(join(shapesPath, shape, size))
+            for cluster in clusters:
+                if cluster.startswith('.'):
+                    continue
+                cs = listdir(join(shapesPath, shape, size, cluster))
+
+                if shapesPath.endswith('shapes'):
+                    cs = listdir(join(shapesPath, shape, size, cluster))
+                    statsCore(cs)
+                else:
+                    # level3
+                    for action in cs:
+                        if action.startswith('.'):
+                            continue
+                        tokens = listdir(join(shapesPath, shape, size, cluster, action))
+                        if shapesPath.endswith('actions'):
+                            statsCore(tokens)
+                        else:
+                            for token in tokens:
+                                if token.startswith('.'):
+                                    continue
+                                cs = listdir(join(shapesPath, shape, size, cluster, action, token))
+                                statsCore(cs)
+    return statsS,clustersDF
+
+
+def defects4jStats(isFixminer=False):
+    if (isfile(join(DATA_PATH, 'defects4j-mapping.pickle'))):
+        matches = load_zipped_pickle(join(DATA_PATH, 'defects4j-mapping.pickle'))
+    else:
+        # defects4j mapping
+        mapping = pd.read_csv('mapping.csv', header=None, index_col=None, sep=' ')
+        mapping.rename(columns={0: 'repo', 1: "commit", 2: 'defects4jID'}, inplace=True)
+        dbDir = join(DATA_PATH, 'redis')
+
+        portInner = '6399'
+        startDB(dbDir, portInner, PROJECT_TYPE )
+
+        import redis
+
+        redis_db = redis.StrictRedis(host="localhost", port=portInner, db=0)
+        keys = redis_db.scan(0, match='*', count='1000000')
+
+        matches = pd.DataFrame(keys[1], columns=['pairs_key'])
+
+        # matches = load_zipped_pickle(join(DATA_PATH,'singleHunks'))
+        matches['pairs_key'] = matches['pairs_key'].apply(lambda x: x.decode())
+        matches['root'] = matches['pairs_key'].apply(lambda x: x.split('/')[0])
+        matches['size'] = matches['pairs_key'].apply(lambda x: x.split('/')[1])
+        matches['file'] = matches['pairs_key'].apply(lambda x: x.split('/')[2])
+        matches['repo'] = matches['file'].apply(lambda x: x.split('_')[0])
+        matches['commit'] = matches['file'].apply(lambda x: x.split('_')[2])
+        matches['hunk'] = matches['pairs_key'].apply(lambda x: x.split('/')[2].split('_')[-1])
+        matches['fileName'] = matches['pairs_key'].apply(lambda x: '_'.join(x.split('/')[2].split('_')[:-1]))
+
+        # save_zipped_pickle(matches, join(DATA_PATH, 'matches.pickle'))
+        matches = matches[matches.repo.apply(lambda i: (
+                    i.startswith('commons-math') or i.startswith('commons-lang') or i.startswith(
+                'closure-compiler') or i.startswith('joda-time') or i.startswith('mockito') or i.startswith('jfreechart')))]
+        # matches = matches[matches.repo.apply(lambda i:  (i.endswith('.git')))]
+        matches['defects4jID'] = matches.apply(lambda x: mapping.query(
+            "commit.str.startswith('{0}') and repo== '{1}'".format(x['commit'], x['repo'])).defects4jID.tolist(), axis=1)
+        save_zipped_pickle(matches, join(DATA_PATH, 'defects4j-mapping.pickle'))
+
+    if not isfile(join(DATA_PATH, 'defects4jcluster.pickle')):
+        # matches = load_zipped_pickle(join(DATA_PATH,'defects4j-mapping.pickle'))
+        # clustersDF = pd.DataFrame(columns=['cid', 'type', 'members'])
+        # idx = 0
+        clustersL = []
+        for type in ['tokens', 'actions', 'shapes']:
+            statsS, clustert = stats(type, isFixminer)
+            clustert =clustert[clustert.members.apply(lambda x:len(x)>0)]
+            clustersL.append(clustert)
+        clustersDF = pd.concat(clustersL)
+
+        # clustersDF
+        # number of instances
+        # clustersDF[clustersDF.type == 'tokens'].members.str.len().sum()
+        # cluster len
+        # len(clustersDF[clustersDF.type == 'shapes'])
+        matches['defects4jID'] = matches['defects4jID'].apply(lambda x: x[0])
+
+
+        def getDefects4JID(x):
+            # filenames = list(set([re.split('.txt_[0-9]+', i)[0] for i in x]))
+            # bids2Compare = [matches[matches.file.str.startswith(fn)].defects4jID.unique()[0] for fn in filenames]
+            keys = []
+            for fn in x:
+                selected = matches[matches.file == fn]
+                if len(selected) != 1:
+                    print('erro')
+                else:
+                    key = selected.iloc[0]['repo'] + '-' + str(selected.iloc[0]['defects4jID'])
+                    keys.append(key)
+
+            return list(set(keys))
+
+
+        clustersDF['defects4j'] = clustersDF.members.apply(lambda x: getDefects4JID(x))
+        p
+        save_zipped_pickle(clustersDF, join(DATA_PATH, 'defects4jcluster.pickle'))
+    else:
+        clustersDF = load_zipped_pickle(join(DATA_PATH, 'defects4jcluster.pickle'))
+    clustersDF
+    clustersDF['ms'] = clustersDF.members.str.len()
+
+    for t in ['shapes', 'actions', 'tokens']:
+        ds = clustersDF[clustersDF.type == t]
+        ds.sort_values(by='ms', ascending=False, inplace=True)
+        # ds = ds[ds.ms > 1]
+
+        ds[['cid', 'ms', 'defects4j']].to_csv(join(DATA_PATH, 'dissectionDefects4j' + t + '.csv'), index=None, header=None)
+
+        print(t, ds.ms.sum(), len(ds))
+        hunks = list(itertools.chain.from_iterable(ds.members.values.tolist()))
+        bugs = set(list(itertools.chain.from_iterable(ds.defects4j.values.tolist())))
+        print(len(hunks), len(bugs))
+
+        keys = [tuple(i.rsplit('-', 1)) for i in bugs]
+
+        test = pd.read_json(join(DATA_PATH, 'defects4j-bugs.json'))
+        test['newKey'] = test.apply(lambda x: tuple([x['program'], str(x['bugId'])]), axis=1)
+        selectBugs = test[test.newKey.isin(keys)]
+        patterns = selectBugs[['program', 'bugId', 'repairPatterns']]
+        patterns['actions'] = selectBugs['repairActions']
+        patterns['oId'] = patterns.apply(lambda x: x['program'] + '-' + str(x['bugId']), axis=1)
+        patterns['oId'].apply(lambda x: ds[ds.defects4j.apply(lambda y: x in y)].cid.values.tolist())
+        patterns['myPatterns'] = patterns['oId'].apply(
+            lambda x: ds[ds.defects4j.apply(lambda y: x in y)].cid.values.tolist())
+        classification = pd.read_json(join(DATA_PATH, 'classification.json'))
+
+        classKeys = classification[~classification['Repair Patterns'].isna()]['Repair Patterns'].values.tolist()
+        classKeys = list(itertools.chain.from_iterable([list(i.keys()) for i in classKeys]))
+        classKeys.remove('notClassified')
+        patterns.repairPatterns = patterns.repairPatterns.apply(lambda x: [i for i in x if i in classKeys])
+        dissectionPattern = set(itertools.chain.from_iterable(patterns['repairPatterns'].values.tolist()))
+
+        dissection = ds
+        dissection['cid'] = dissection.cid.apply(lambda x: x[0])
+        dissection = dissection[['cid', 'defects4j']]
+        dissection['repairPatterns'] = dissection.defects4j.apply(lambda x:set([tuple(patterns[patterns.oId == i].iloc[0].repairPatterns) for i in x]))
+        notSingle = dissection[dissection.defects4j.str.len() != 1]
+
+        notSingle['repairPatterns'] = notSingle.repairPatterns.apply(lambda x:set.intersection(*[set(i) for i in x]))
+        notSingle = notSingle[notSingle.repairPatterns != set()]
+        notSingle.repairPatterns =notSingle.repairPatterns.apply(lambda i: {tuple(i)})
+        # myDataset = notSingle[notSingle.repairPatterns.str.len() == 1]
+        myDataset = dissection[dissection.defects4j.str.len() == 1]
+        myPatterns = pd.concat([notSingle, myDataset])
+
+        print(len(set.union(*myPatterns.repairPatterns.values.tolist())))
+
+        myPatterns.repairPatterns = myPatterns.repairPatterns.apply(lambda x: list(x.pop()))
+        allPAtterns =  myPatterns.repairPatterns.values.tolist()
+        [i.sort() for i in allPAtterns]
+
+        counts = Counter([tuple(i) for i in allPAtterns]).items()
+        granularity = {k: v for k, v in counts if v > 1 and k != tuple()}
+        print('consisteny %' ,sum([v for k, v in counts if k != tuple()]))
+        print('Granularity %', len(granularity))
+
+
+
+        myPatterns.to_csv(join(DATA_PATH, 'dissectionMyPatterns' + t + '.csv'), index=None, header=None)
+
+        # dissectionPatterns = [list(i) for i in set.union(*myPatterns.repairPatterns.values.tolist())]
+        # [i.sort() for i in dissectionPatterns]
+        # print(len(set.union(*[{tuple(i)} for i in dissectionPatterns])))
+        # logging.info('%s Unique label %d',t, len(set(list(itertools.chain.from_iterable(myDataset.repairPatterns.values.tolist())))))
+        # def cmp(a, b):
+        #     if a > b:
+        #         return 'Dissection'
+        #     elif a == b:
+        #         return 'Equal'
+        #     else:
+        #         return 'Fixminer'
+        #
+        #
+        # patterns['cmp'] = patterns.apply(lambda x: cmp(len(x['repairPatterns']), len(x['myPatterns'])), axis=1)
+        # patterns.to_csv(join(DATA_PATH, 'dissectionPatterns' + t + '.csv'), index=None, header=None)
+        # print('Pattern')
+        # print(patterns['cmp'].value_counts())
+        # patterns['cmpActions'] = patterns.apply(lambda x: cmp(len(x['actions']), len(x['myPatterns'])), axis=1)
+        # print('Action')
+        # print(patterns['cmpActions'].value_counts())
+        # myPatterns = set(itertools.chain.from_iterable(patterns['myPatterns'].values.tolist()))
+        # print(len(dissectionPattern), len(myPatterns))
+        # # classification = pd.read_json(join(DATA_PATH, 'classification.json'))
+        #
+        # patterns.repairPatterns = patterns.repairPatterns.apply(lambda x: tuple(x))
+        # logging.info('%s # Dissection Patterns %d, Unique %d, Empty %d',t, len(patterns['repairPatterns'].values.tolist()) -patterns['repairPatterns'].values.tolist().count(()),
+        # len(set(patterns['repairPatterns'].values.tolist())),patterns['repairPatterns'].values.tolist().count(()))
+        #
+        # myPatterns = patterns.myPatterns.str.len().values.tolist()
+        # repairPatterns = patterns.repairPatterns.str.len().values.tolist()
+        # actions = patterns.actions.str.len().values.tolist()
+        #
+        #
+        #
+        #
+        # plotScatter(myPatterns,repairPatterns,"# FixMiner Patterns",'# Dissection Patterns',11,t+'Fixminer-Patterns')
+        # plotScatter(myPatterns,actions,"# FixMiner Patterns",'# Dissection Patterns',21,t+'Fixminer-Actions')
+
+
+javaAst = ["AnonymousClassDeclaration", "ArrayAccess", "ArrayCreation", "ArrayInitializer", "ArrayType", "AssertStatement",
+       "Assignment", "Block", "BooleanLiteral", "BreakStatement", "CastExpression", "CatchClause", "CharacterLiteral",
+       "ClassInstanceCreation", "CompilationUnit", "ConditionalExpression", "ConstructorInvocation",
+       "ContinueStatement", "DoStatement", "EmptyStatement", "ExpressionStatement", "FieldAccess", "FieldDeclaration",
+       "ForStatement", "IfStatement", "ImportDeclaration", "InfixExpression", "Initializer", "Javadoc",
+       "LabeledStatement", "MethodDeclaration", "MethodInvocation", "NullLiteral", "NumberLiteral",
+       "PackageDeclaration", "ParenthesizedExpression", "PostfixExpression", "PrefixExpression", "PrimitiveType",
+       "QualifiedName", "ReturnStatement", "SimpleName", "SimpleType", "SingleVariableDeclaration", "StringLiteral",
+       "SuperConstructorInvocation", "SuperFieldAccess", "SuperMethodInvocation", "SwitchCase", "SwitchStatement",
+       "SynchronizedStatement", "ThisExpression", "ThrowStatement", "TryStatement", "TypeDeclaration",
+       "TypeDeclarationStatement", "TypeLiteral", "VariableDeclarationExpression", "VariableDeclarationFragment",
+       "VariableDeclarationStatement", "WhileStatement", "InstanceofExpression", "LineComment", "BlockComment",
+       "TagElement", "TextElement", "MemberRef", "MethodRef", "MethodRefParameter", "EnhancedForStatement",
+       "EnumDeclaration", "EnumConstantDeclaration", "TypeParameter", "ParameterizedType", "QualifiedType",
+       "WildcardType", "NormalAnnotation", "MarkerAnnotation", "SingleMemberAnnotation", "MemberValuePair",
+       "AnnotationTypeDeclaration", "AnnotationTypeMemberDeclaration", "Modifier", "UnionType", "Dimension",
+       "LambdaExpression", "IntersectionType", "NameQualifiedType", "CreationReference", "ExpressionMethodReference",
+       "SuperMethodReference", "TypeMethodReference", "MethodName", "Operator", "New", "Instanceof"]
+
+cAst = ["unit","comment","literal","operator","modifier","name","type","condition","block","index","decltype","typename","atomic","assert","generic_selection","selector","association_list","association","expr_stmt","expr","decl_stmt","decl","init","range","break","continue","goto","label","typedef","asm","macro","enum","enum_decl","if","ternary","then","else","elseif","while","typeof","do","switch","case","default","for","foreach","control","incr","function","function_decl","lambda","specifier","return","call","sizeof","parameter_list","parameter","krparameter_list","krparameter","argument_list","argument","capture","struct","struct_decl","union","union_decl","class","class_decl","public","private","protected","signals","forever","emit","member_init_list","constructor","constructor_decl","destructor","destructor_decl","super","friend","extern","namespace","using","try","catch","finally","throw","throws","noexcept","template","directive","file","number","include","define","undef","line","ifdef","ifndef","elif","endif","pragma","error","warning","value","empty","region","endregion","import","marker","parse","mode","lock","fixed","checked","unchecked","unsafe","using_stmt","delegate","event","constraint","extends","implements","package","synchronized","interface","interface_decl","annotation_defn","static","attribute","target","linq","from","select","where","let","orderby","group","join","in","on","equals","by","into","escape","annotation","alignas","alignof","typeid","ref_qualifier","receiver","message","protocol_list","category","protocol","required","optional","property","attribute_list","synthesize","dynamic","encode","autoreleasepool","compatibility_alias","protocol_decl","cast","position","clause","empty_stmt"]
+
+
+def exportAbstractPatterns():
+    clusterStats,df = stats('shapes')
+    port = 6399
+    import redis
+    redis_db = redis.StrictRedis(host="localhost", port=port, db=0)
+    isJava = False
+    if 'java' == PROJECT_TYPE:
+        isJava = True
+    for id, members in df[['cid','members']].values.tolist():
+
+
+        dKey = '/'.join(id[0].split('-')[:-1]) + "/" + members[0]
+        lines = redis_db.hget("dump",dKey )
+        cid = id[0].replace("-",'#')
+        abstractPattern(cid,lines.decode(),isJava,members)
+
+def abstractPattern(cid,lines,isJava,cMembers):
+
+    if isJava:
+        ast = javaAst
+    else:
+        ast = cAst
+    movPattern = 'MOV (' + '|'.join(ast) + ')@@(.*)@TO@ (' + '|'.join(ast) + ')@@(.*)@AT@'
+    delPattern = 'DEL (' + '|'.join(ast) + ')@@(.*)@AT@'
+    insPattern = 'INS (' + '|'.join(ast) + ')@@(.*)@TO@ (' + '|'.join(ast) + ')@@(.*)@AT@'
+    updPattern = 'UPD (' + '|'.join(ast) + ')@@(.*)@TO@(.*)@AT@'
+
+    level = 'actions'
+
+    lines = re.split("@LENGTH@ \d+", lines)
+    tokens = []
+    for line in lines:
+        # levelPatch  = len(re.findall('\w*---', line))
+        match = re.search(r"^\w*---+", line,re.M)
+
+
+        if match is not None:
+            not_matched, matched = line[:match.start()], match.group()
+            levelPatch  = int(len(matched) / 3)
+        else:
+            levelPatch = 0
+        line = line.strip().strip('-')
+        type = ''
+        if line is '':
+            continue
+        t = []
+        searchPattern = ''
+        if line.startswith('INS'):
+            if level =='actions':
+                t= [1,3]
+            else:
+                t = [1]
+            searchPattern = insPattern
+            type =' INS '
+        elif line.startswith('UPD'):
+            t = [1]
+            searchPattern = updPattern
+            type = ' UPD '
+        elif line.startswith('DEL'):
+            t = [1]
+            searchPattern = delPattern
+            type = ' DEL '
+        elif line.startswith('MOV'):
+            if level == 'actions':
+                t = [1, 3]
+            else:
+                t = [1]
+            searchPattern = movPattern
+            type = ' MOV '
+    # from common.preprocessing import preprocessingForSimi
+        m = re.search(searchPattern, line, re.DOTALL)
+        if t is None:
+            print()
+        if m:
+            for k in t:
+                prefix = '---' * levelPatch
+                if prefix != '':
+                    prefix = '\n'+prefix
+                token = m.group(k)
+                if level =='actions':
+                    if k ==3:
+                        prefix = 'TO '
+                    else:
+                        prefix = prefix + type
+
+                tokens.append(prefix+token)
+
+    tokens
+    inferedFrom = "\n\n // Infered from ({})".format(', '.join(cMembers))
+    tokens.append(inferedFrom)
+    clusterSavePath = join(DATA_PATH,'patterns')
+    os.makedirs(clusterSavePath, exist_ok=True)
+    with open(join(clusterSavePath, cid), 'w', encoding='utf-8') as writeFile:
+    #     # if levelPatch == 0:
+        writeFile.write(' '.join(tokens))
+        # else:
+        #     writeFile.write('\n'.join(tokens))
diff --git a/python/test_patched_file.py b/python/test_patched_file.py
new file mode 100755
index 0000000..e916e0e
--- /dev/null
+++ b/python/test_patched_file.py
@@ -0,0 +1,247 @@
+import bugzoo
+from bugzoo import server, Container
+from common.commons import *
+import signal
+
+# from common.commons import shellGitCheckout
+DATA_PATH = os.environ["DATA_PATH"]
+introClassFile = join(DATA_PATH,'introClassData.txt')
+
+def testCore(t):
+        bugName, port = t
+        container = None
+        # with bugzoo.server.ephemeral(port=port, verbose=False,bugzooPath="/Users/anil.koyuncu/anaconda3/envs/python36/bin/bugzood", timeout_connection=3000) as client:
+        cmd = 'bash {} {}'.format(join(DATA_PATH,'startBugzoo.sh'),port)
+
+        with Popen(cmd, stdout=PIPE, stderr=PIPE, shell=True) as process:
+
+            # o,e = shellGitCheckout(cmd)
+            url = "http://127.0.0.1:{}".format(port)
+            timeout_connection = 3000
+            client = Client(url, timeout_connection=timeout_connection)
+            # with bugzoo.server.ephemeral(port=port, verbose=False, timeout_connection=3000) as client:
+            try:
+                # port = 6060
+                # url = "http://127.0.0.1:{}".format(port)
+                # client = Client(url, timeout_connection=300)
+                # bugName = bugList[i]
+                # if bugName != 'introclass:digits:070455:000':
+                #     continue
+                fix = 'failure'
+                output = ''
+                # print("bugName: {}".format(bugName), end=' ')
+                output += 'bugName:' + bugName + ', '
+
+                bug = client.bugs[bugName]
+                if not client.bugs.is_installed(bug):
+                    output += ' building'
+                    client.bugs.build(bug)
+
+                    # client.bugs.download(bug)
+                    # print("the image is not installed :'(")
+
+                # print("creating container...")
+                container = client.containers.provision(bug)
+                # print("container is ready")
+
+                # print("First_test:", end=' ')
+                output += 'First_test:'
+                pre_test_outcomes = {}
+                pre_failure_cases, pre_failure, total, pre_test_outcomes = test_all(bug, container, client)
+                # print("@fail:{}@total:{}".format(pre_failure, total), end=' ')
+                # print("@pre_failure_cases:{}".format(pre_failure_cases), end=' ')
+                if pre_failure == 0:
+                    logging.error(bugName + ' no failed test initially')
+                    return ''
+                output += '@fail:' + str(pre_failure) + '@total:' + str(total) + ', '
+
+                # print("patching...")
+                path = join(DATA_PATH,'introclass',bugName)
+                patch_path = join(path ,'patched')
+                # avaliable_patch = os.path.abspath('data') + '/introclass2/' + bugName + '/' + 'patches'
+                patch_names = os.listdir(patch_path)
+
+                times = 0
+                for patch_name in patch_names:
+                    # if patch_name not in os.listdir(avaliable_patch):
+                    #     continue
+                    patch = join(patch_path,patch_name)
+
+                    patch_result = patched_application(path, bug.name, patch, client, container)
+                    if patch_result == -1 or patch_result.code != 0:
+                        # print("@{}@".format('False'), end='')
+                        # print("{}".format('F'), end=' ')
+                        output += '@False@F '
+                        continue
+                    # print("@{}@".format('True'), end='')
+                    output += '@True@'
+
+                    # print("Second_test:", end=' ')
+                    post_test_outcomes = {}
+                    post_failure_cases, post_failure, total, post_test_outcomes = test_all(bug, container, client)
+                    # print("{}".format(post_failure), end=' ')
+                    output += str(post_failure) + ' '
+                    if post_failure == 0:
+                        times += 1
+                        fix = 'success'
+                        # print("fix {} by {}".format(bugName, patch_name))
+                        output += 'fix {} by {} '.format(bugName, patch_name)
+                    # print("@fail:{}@total:{}".format(post_failure, total),end=' ')
+                    # print("@post_failure_cases:{}".format(post_failure_cases))
+
+
+                # cmd = 'docker rm -fv {}'.format(container.id)
+                # out, e = shellGitCheckout(cmd)
+
+                output += 'times:{}, '.format(times) + fix
+                print(output)
+                return output
+            except Exception as e:
+                logging.error(e)
+            finally:
+                # ''
+                cmd = 'docker stop {}'.format(container.id)
+                out, e = shellGitCheckout(cmd)
+                client.shutdown()
+                os.killpg(process.pid, signal.SIGTERM)
+                # docker stop $(docker ps -q)
+
+
+
+def patch_validate():
+
+
+    logger = logging.getLogger()
+
+    for k,v in logger.manager.loggerDict.items():
+        if(k.startswith('bugzoo')):
+            if isinstance(v,logging.Logger):
+                v.setLevel(logging.ERROR)
+
+    # url = "http://127.0.0.1:6060"
+    # client = bugzoo.Client(url)
+    # bug = client.bugs['introclass:checksum:08c7ea:006']
+    bugList = []
+
+    # cmd = 'bash ' + join(DATA_PATH,'startBugzoo.sh')
+    # cmd = "/Users/anil.koyuncu/anaconda3/envs/python36/bin/bugzood --debug -p " + str(port)
+    # output, errors = shellGitCheckout(cmd)
+    # with bugzoo.server.ephemeral(port=8082, verbose=True, timeout_connection=3000) as client:
+    port = 6000
+    bugs2test= listdir(join(DATA_PATH, "introclass"))
+    for b in bugs2test:
+        t = b, port
+        bugList.append(t)
+        if port == 6300:
+            port = 6000
+        port += 1
+    # with open(introClassFile, 'r') as file:
+    #     for line in file.readlines():
+    #
+    #         t =line.strip(),port
+    #         bugList.append(t)
+    #         if port == 6300:
+    #             port = 6000
+    #         port +=1
+
+        # for i in range(0,len(bugList)):
+    # t = 'introclass:syllables:93f87b:005',6000
+    # t = 'introclass:syllables:99cbb4:000',6000
+    # testCore(t)
+    results = parallelRunMerge(testCore, bugList,max_workers=10)
+    # print('\n'.join(results))
+    with open(join(DATA_PATH, 'introTestResults'), 'w',
+              encoding='utf-8') as writeFile:
+        # if levelPatch == 0:
+        writeFile.write('\n'.join(results))
+        # for i in bugList:
+        #     testCore(i)
+        # pass
+
+
+from bugzoo import Patch, Client
+
+def test_all(bug, container,  client):
+    test_outcomes = {}  # type: Dict[TestCase, TestOutcome]
+    failure_cases = []
+    failure = 0
+    total = len(bug.tests._tests)
+    for test in bug.tests:
+        test_outcomes[test] = client.containers.test(container, test)
+        # if test.expected_outcome != test_outcomes[test].passed:
+        if test_outcomes[test].passed != True:
+            failure += 1
+            failure_cases.append(test.command)
+            break
+    return failure_cases, failure, total, test_outcomes
+
+
+def patched_application(path, bugName, patched, client: Client, container: Container):
+    buggroup = bugName.split(":")[1]
+    # path = join(BUGDIR,bug)
+    program = path + '/' + buggroup + '.c'
+    fixedFile = patched.split('/')[-1]
+
+    cmd = 'docker cp ' + patched + ' ' + container.id + ':/experiment/'
+    output, e = shellGitCheckout(cmd)
+
+    cmd = 'sudo chown $(whoami):$(whoami) "{}"'
+    cmd = cmd.format(fixedFile)
+    output = client.containers.exec(container=container, command=cmd, context='/experiment/')
+    # cmd = 'rm .genprog_test_cache.json & mv {} {}.c & gcc -o {} {}'.format(fixedFile,fixedFile, buggroup, fixedFile+'.c')
+    cmd = 'rm {} & rm .genprog_test_cache.json'.format(buggroup)
+    output = client.containers.exec(container=container, command=cmd, context='/experiment/')
+
+    cmd = 'setarch `uname -m` -R gcc -o {} {}'.format(buggroup, fixedFile)
+    output = client.containers.exec(container=container, command=cmd, context='/experiment/')
+    return output
+
+def checkCorrect():
+    regex = r"fix (.*) by (.*)\.c"
+    if not os.path.exists(join(DATA_PATH, 'introclass_eval')):
+        os.makedirs(join(DATA_PATH, 'introclass_eval'))
+
+    with open(join(DATA_PATH, 'introTestResults'), 'r',
+              encoding='utf-8') as readFile:
+        res = readFile.readlines()
+        results = []
+        for line in res:
+            if line.strip().endswith('success'):
+                line = '\n'.join(line.split('@'))
+                matches = re.finditer(regex, line, re.MULTILINE)
+
+                for matchNum, match in enumerate(matches, start=1):
+
+
+                    bug, patch = match.groups()
+                    print(bug,patch)
+                    t = bug,patch
+                    results.append(t)
+
+                    # for groupNum in range(0, len(match.groups())):
+                    #     groupNum = groupNum + 1
+                    #
+                    #     print("Group {groupNum} found at {start}-{end}: {group}".format(groupNum=groupNum,
+                    #                                                                     start=match.start(groupNum),
+                    #                                                                     end=match.end(groupNum),
+                    #                                                                     group=match.group(groupNum)))
+                    #     line
+        for t in results:
+            bug, patch = t
+
+            if not os.path.exists(join(DATA_PATH, 'introclass_eval',bug)):
+                os.makedirs(join(DATA_PATH, 'introclass_eval',bug))
+
+            buggyFile = join(DATA_PATH,'introclass',bug,patch.split('.')[0]+'.c')
+            spinferFix = join(DATA_PATH,'introclass_patched',bug,'patches',patch + '.c')
+            spinferPatch = join(DATA_PATH,'introclass_eval',bug,patch +'.patch')
+            oracle = join(DATA_PATH,'introclass',bug,'oracle.c.patch')
+            oracleEval = join(DATA_PATH,'introclass_eval',bug,'oracle.patch')
+            cmd =  'diff -u ' +buggyFile + ' ' + spinferFix + ' > ' + spinferPatch
+            o,e= shellGitCheckout(cmd)
+            shutil.copy(oracle,oracleEval)
+
+
+if __name__ == "__main__":
+    patch_validate()
+
diff --git a/python/tokens.py b/python/tokens.py
new file mode 100644
index 0000000..3ceeb51
--- /dev/null
+++ b/python/tokens.py
@@ -0,0 +1,138 @@
+from common.commons import *
+
+DATA_PATH = os.environ["DATA_PATH"]
+ast = ["AnonymousClassDeclaration", "ArrayAccess", "ArrayCreation", "ArrayInitializer", "ArrayType", "AssertStatement",
+       "Assignment", "Block", "BooleanLiteral", "BreakStatement", "CastExpression", "CatchClause", "CharacterLiteral",
+       "ClassInstanceCreation", "CompilationUnit", "ConditionalExpression", "ConstructorInvocation",
+       "ContinueStatement", "DoStatement", "EmptyStatement", "ExpressionStatement", "FieldAccess", "FieldDeclaration",
+       "ForStatement", "IfStatement", "ImportDeclaration", "InfixExpression", "Initializer", "Javadoc",
+       "LabeledStatement", "MethodDeclaration", "MethodInvocation", "NullLiteral", "NumberLiteral",
+       "PackageDeclaration", "ParenthesizedExpression", "PostfixExpression", "PrefixExpression", "PrimitiveType",
+       "QualifiedName", "ReturnStatement", "SimpleName", "SimpleType", "SingleVariableDeclaration", "StringLiteral",
+       "SuperConstructorInvocation", "SuperFieldAccess", "SuperMethodInvocation", "SwitchCase", "SwitchStatement",
+       "SynchronizedStatement", "ThisExpression", "ThrowStatement", "TryStatement", "TypeDeclaration",
+       "TypeDeclarationStatement", "TypeLiteral", "VariableDeclarationExpression", "VariableDeclarationFragment",
+       "VariableDeclarationStatement", "WhileStatement", "InstanceofExpression", "LineComment", "BlockComment",
+       "TagElement", "TextElement", "MemberRef", "MethodRef", "MethodRefParameter", "EnhancedForStatement",
+       "EnumDeclaration", "EnumConstantDeclaration", "TypeParameter", "ParameterizedType", "QualifiedType",
+       "WildcardType", "NormalAnnotation", "MarkerAnnotation", "SingleMemberAnnotation", "MemberValuePair",
+       "AnnotationTypeDeclaration", "AnnotationTypeMemberDeclaration", "Modifier", "UnionType", "Dimension",
+       "LambdaExpression", "IntersectionType", "NameQualifiedType", "CreationReference", "ExpressionMethodReference",
+       "SuperMethodReference", "TypeMethodReference", "MethodName", "Operator", "New", "Instanceof"]
+
+movPattern = 'MOV (' + '|'.join(ast) + ')@@(.*)@TO@ (' + '|'.join(ast) + ')@@(.*)@AT@'
+delPattern = 'DEL (' + '|'.join(ast) + ')@@(.*)@AT@'
+insPattern = 'INS (' + '|'.join(ast) + ')@@(.*)@TO@ (' + '|'.join(ast) + ')@@(.*)@AT@'
+updPattern = 'UPD (' + '|'.join(ast) + ')@@(.*)@TO@(.*)@AT@'
+
+import redis
+port = '6380'
+redis_db = redis.StrictRedis(host="localhost", port=port, db=0)
+redis_db1 = redis.StrictRedis(host="localhost", port=port, db=1)
+redis_db2 = redis.StrictRedis(host="localhost", port=port, db=2)
+
+redis_out  = redis.StrictRedis(host="localhost", port=6399, db=0)
+
+def getTokens(prefix, i):
+    dist2load = redis_db1.get(prefix + "-" + i);
+
+    with open(join(DATA_PATH, 'actions', prefix.replace('-', '/'), dist2load.decode()), 'r') as rFile:
+        lines = rFile.read()
+
+    lines = re.split("@LENGTH@ \d+", lines)
+    tokens = []
+    for line in lines:
+        line = line.strip().strip('-')
+        if line is '':
+            continue
+        t = []
+        searchPattern = ''
+        if line.startswith('INS'):
+            t = [2]
+            searchPattern = insPattern
+        elif line.startswith('UPD'):
+            t = [2, 3]
+            searchPattern = updPattern
+        elif line.startswith('DEL'):
+            t = [2]
+            searchPattern = delPattern
+        elif line.startswith('MOV'):
+            t = [2]
+            searchPattern = movPattern
+
+        # MOV TryStatement@@try:[] @TO@ MethodDeclaration@@public, T, T, MethodName:lookupByNameAndType, String name, Class type,  @AT@ 2164 @LENGTH@ 646
+        # DEL VariableDeclarationStatement@@Path hfilePath=HFileLink.getHFileFromBackReference(getConf(),filePath); @AT@ 2474 @LENGTH@ 74
+        # INS ThrowStatement@@MethodInvocation:convertJedisAccessException(ex) @TO@ CatchClause@@Exception ex @AT@ 12194 @LENGTH@ 38
+        # UPD MethodInvocation@@getVectorExpression(elseDesc,mode) @TO@ getVectorExpression(elseDesc,VectorExpressionDescriptor.Mode.PROJECTION) @AT@ 136925 @LENGTH@ 35
+        # from common.preprocessing import preprocessingCodeElementsList
+
+        # lines = re.sub('@AT@\s*[0-9]+\s*', ' ', lines)
+        # lines = re.sub('@LENGTH@\s*[0-9]+\s*', ' ', lines)
+        # lines = re.sub('@TO@', ' ', lines)
+        # lines = re.sub('@@', ' ', lines)
+        # lines = re.sub('INS|UPD|MOV|DEL', ' ', lines)
+        # lines = re.sub('MethodInvocation:', ' ', lines)
+        # lines = re.sub('Name:', ' ', lines)
+        # lines = re.sub('|'.join(ast),' ',lines)
+        from common.preprocessing import preprocessingForSimi
+        m = re.search(searchPattern, line, re.DOTALL)
+        if t is None:
+            print()
+        if m:
+            for k in t:
+                token = m.group(k)
+                token = re.sub('MethodInvocation:|Name:|MethodName:|SimpleName:|InfixExpression:', ' ',
+                               token)
+                # token = re.sub(' Name:', ' ', token)
+                # token = re.sub(' MethodName:', ' ', token)
+                # token = re.sub(' SimpleName:', ' ', token)
+                tokens.append(token)
+
+
+        else:
+            return None
+
+    tokens = preprocessingForSimi(tokens)
+    return tokens
+    # for key in keys:
+
+
+def simiCore(key):
+    split = key.split('_')
+    prefix = split[0]
+    i = split[1]
+    j = split[2]
+
+
+    # inner = innerPool.getResource();
+
+    # preCorpusBug = preprocessingCodeElementsList(lines)
+    # return preCorpusBug
+
+    tokensi = getTokens(prefix, i)
+    tokensj = getTokens(prefix, j)
+
+    tokensi
+    import textdistance
+    # simi = textdistance.jaccard(tokensi,tokensj)
+    # simi2 = textdistance.sorensen_dice(' '.join(tokensi), ' '.join(tokensj))
+    simi2 = textdistance.sorensen_dice(list(unique_everseen(tokensi)), list(unique_everseen(tokensj)))
+    # simi
+    #
+    # from common.preprocessing import calculateTfIdfNLList
+    #
+    # if len(tokensj) == 0:
+    #     print()
+    # if tokensi[0] != [] or tokensj[0] != []:
+    #     v = calculateTfIdfNLList([tokensi])
+    #     sourceDTM = v.transform([tokensi])
+    #     bugDTM = v.transform([tokensj])
+    #     from sklearn.metrics.pairwise import cosine_similarity
+    #
+    #     res = cosine_similarity(bugDTM, sourceDTM)
+    #     simiScore =res[0][0]
+    if simi2 >= 0.8:
+        print(key,simi2)
+
+        redis_db2.set(key, simi2)
+    redis_db.delete(key)
\ No newline at end of file
diff --git a/python/validate_manybugs.py b/python/validate_manybugs.py
new file mode 100644
index 0000000..c430a48
--- /dev/null
+++ b/python/validate_manybugs.py
@@ -0,0 +1,395 @@
+import bugzoo
+from bugzoo import server, Container
+import csv
+import os
+from common.commons import *
+import signal
+DATA_PATH = os.environ["DATA_PATH"]
+
+BUGDIR = join(DATA_PATH,'manybugs')
+PATCHES_DIR = join(DATA_PATH,'manybugs_sos')
+
+def patch_validate(t):
+    bugName, port = t
+    # with bugzoo.server.ephemeral(port=8080,verbose=True,timeout_connection=3000) as client:
+        # url = "http://127.0.0.1:6060"
+        # client = bugzoo.Client(url)
+        # bug = client.bugs['introclass:checksum:08c7ea:006']
+    # client,process = getClient(port)
+    container = None
+    cmd = 'bash {} {}'.format(join(DATA_PATH, 'startBugzoo.sh'), port)
+
+    with Popen(cmd, stdout=PIPE, stderr=PIPE, shell=True) as process:
+        # o,e = shellGitCheckout(cmd)
+        url = "http://127.0.0.1:{}".format(port)
+        timeout_connection = 3000
+        client = Client(url, timeout_connection=timeout_connection)
+
+        try:
+            # bugName = 'manybugs:python:69223-69224'
+            if bugName == 'manybugs:php:2011-03-25-8138f7de40-3acdca4703' or bugName == 'manybugs:php:2011-10-31-c4eb5f2387-2e5d5e5ac6':
+                return
+
+            #get tests-list
+            group = bugName.split(':')[1]
+            tail = bugName.split(':')[2]
+            test_path = 'data/tests-list/' + group + '/' + group + '-bug-' + tail + '/' + 'tests-list.txt'
+            test_path = 'data/tests-package/' + group + '/' + group + '-bug-' + tail + '/' + 'tests-list.txt'
+            # test_path = 'data/tests-list-tian/' + group + '/' + group + '-bug-' + tail + '/' + 'tests-list.txt'
+            test_path = join(DATA_PATH,'tests-list-tian',group + '/' + group + '-bug-' + tail + '/' + 'tests-list.txt')
+            # test_path = 'data/tests-list-tian/' + group + '/' + group + '-bug-' + tail + '/' + 'tests-list.txt'
+            tests_list = []
+            if not os.path.exists(test_path):
+                # print("no tests-list!")
+                return
+            output = ''
+            output += "bugName: {}".format(bugName)
+
+            with open(test_path,'r') as f:
+                for line in f.readlines():
+                    tests_list.append(line.strip())
+
+            bug = client.bugs[bugName]
+            if client.bugs.is_installed(bug):
+                # print("the image is installed! :-)")
+                pass
+            else:
+                client.bugs.build(bug)
+                # client.bugs.download(bug)
+                # print("the image is not installed :'(")
+
+            # print("creating container...")
+            container = client.containers.provision(bug)
+            # print("container is ready")
+
+
+            output = patch_application_our(client, container,bug,tests_list,output)
+            print(output)
+            return output
+
+        except Exception as e:
+            print(e)
+            # continue
+        finally:
+            cmd = 'docker stop {}'.format(container.id)
+            out, e = shellGitCheckout(cmd)
+            client.shutdown()
+            os.killpg(process.pid, signal.SIGTERM)
+
+from bugzoo import Patch, Client
+
+def test_part(bug, container,  client, tests_list):
+    test_outcomes = []  # type: Dict[TestCase, TestOutcome]
+    failure_cases = []
+    failure = 0
+    total = len(tests_list)
+    if bug.name.startswith('manybugs:wireshark'):
+        cmd = ' ./autogen.sh && ./configure && make'
+        o = client.containers.exec(container=container, command=cmd, context='/experiment/src', time_limit=120)
+
+        cmd = 'sudo mkdir scenario && sudo cp -r src/ scenario'
+        o = client.containers.exec(container=container, command=cmd, context='/experiment', time_limit=120)
+    for test in tests_list:
+        cmd = './test.sh ' + test
+        out = client.containers.exec(container=container, command=cmd, context='/experiment/', time_limit=120)
+        # cmd = 'docker exec ' + container.id + ' ' + cmd
+        # o,e = shellGitCheckout(cmd)
+        # if test.expected_outcome != test_outcomes[test].passed:
+        if 'PASS' not in out.output or out.code != 0:
+            # o, e = shellGitCheckout(cmd)
+            out = client.containers.exec(container=container, command=cmd, context='/experiment/', time_limit=120)
+            if 'PASS' not in out.output or out.code != 0:
+                failure += 1
+                failure_cases.append(test)
+                test_outcomes.append(out.output)
+                break
+    return failure_cases, failure, total, test_outcomes
+
+# def test_all(bug, container,  client):
+#     test_outcomes = {}  # type: Dict[TestCase, TestOutcome]
+#     failure_cases = []
+#     failure = 0
+#     total = len(bug.tests._tests)
+#     for test in bug.tests:
+#         test_outcomes[test] = client.containers.test(container, test)
+#         # if test.expected_outcome != test_outcomes[test].passed:
+#         if test_outcomes[test].passed != True:
+#             failure += 1
+#             failure_cases.append(test.name)
+#             break
+#     return failure_cases, failure, total, test_outcomes
+
+# def get_diff_sos(bug, client, container):
+#     patch_list = []
+#     group = bug.split(':')[1]
+#     path = './data/manybugs_sos_patches/' + group + '/' + group + '-bug-' + bug.split(':')[2]
+#     for root, dirs, files in os.walk(path):
+#         for name in files:
+#             if name == 'sos.patch':
+#                 patch_list.append(os.path.join(root, name))
+#
+#     diff_files = []
+#     for patch_file in patch_list:
+#         unidiff = ''
+#         with open(patch_file,'r') as file:
+#             for line in file.readlines():
+#                 if group == 'wireshark':
+#                     if line.startswith('---'):
+#                         # begin = line.index('diffs') + 6
+#                         begin = line.index('a')
+#                         unidiff += '--- ' + line[begin+2:]
+#                     elif line.startswith('+++'):
+#                         # begin = line.index('diffs') + 6
+#                         begin = line.index('b')
+#                         unidiff += '+++ ' + line[begin+2:]
+#                     else:
+#                         unidiff += line
+#                 else:
+#                     if line.startswith('---'):
+#                         # begin = line.index('diffs') + 6
+#                         ends = line.index('_orig')
+#                         unidiff += line[:ends]+ ' \n'
+#                     else:
+#                         unidiff += line
+#             diff_files.append(unidiff.strip())
+#     return diff_files
+
+# def get_diff_our(bug, client, container):
+#     patch_list = []
+#     group = bug.split(':')[1]
+#     patches_path = './data/manybugs_anil_patches1/' + bug + '/patches'
+#     for root, dirs, files in os.walk(patches_path):
+#         for name in files:
+#             if name.endswith('.txt'):
+#                 patch_list.append(os.path.join(root, name))
+#
+#     diff_files = {}
+#     for patch_file in patch_list:
+#         unidiff = ''
+#         with open(patch_file,'r') as file:
+#             for line in file.readlines():
+#                 if line.startswith('---'):
+#                     begin = line.index('/diffs')
+#                     unidiff += '--- /experiment' + line[begin:]
+#                 elif line.startswith('+++'):
+#                     begin = line.index('diffs') + 6
+#                     ends = line.index('.c-')
+#                     unidiff += line[:4] + line[begin:ends] + '.c' + '\n'
+#                 else:
+#                     unidiff += line
+#             diff_files[patch_file.split('/')[-1]] = unidiff.strip()
+#     return diff_files
+
+# def get_diff(bug, client, container):
+#     patch_list = []
+#     path = './data/manybugs/' + bug + '/diffs'
+#     for root, dirs, files in os.walk(path):
+#         for name in files:
+#             if name.endswith('.patch'):
+#                 patch_list.append(os.path.join(root, name))
+#
+#     diff_files = []
+#     for patch_file in patch_list:
+#         unidiff = ''
+#         with open(patch_file,'r') as file:
+#             for line in file.readlines():
+#                 if line.startswith('---'):
+#                     begin = line.index('diffs') + 6
+#                     ends = line.index('.c-')
+#                     unidiff += line[:4] + line[begin:ends] + '.c' + '\n'
+#                     preFile = line[begin:line.index('\t')]
+#                 elif line.startswith('+++'):
+#                     begin = line.index('diffs') + 6
+#                     ends = line.index('.c-')
+#                     unidiff += line[:4] + line[begin:ends] + '.c' + '\n'
+#                 else:
+#                     unidiff += line
+#             cmd = 'cp '+ '../diffs/' + preFile + ' ' + preFile[:preFile.index('.c')+2]
+#             # cmd += ' & ' + 'make -j$(nproc)'
+#             client.containers.exec(container=container, command=cmd, context='/experiment/src')
+#             diff_files.append(unidiff.strip())
+#
+#     return diff_files
+
+# def patch_ours_test(bug, bugName, container, client, tests_list):
+#     patch_target = []
+#     path = './data/manybugs/' + bugName + '/diffs'
+#     for root, dirs, files in os.walk(path):
+#         for name in files:
+#             if name.endswith('.patch'):
+#                 file_path = os.path.join(root, name[:name.index('.patch')])
+#                 patch_target.append(file_path[file_path.index('diffs')+6:])
+#     if len(patch_target) != 1:
+#         print('exceed! ')
+#         return
+#     patched = []
+#     patched_path = './data/manybugs_tian_1/' + bugName + '/patched'
+#     for root, dirs, files in os.walk(patched_path):
+#         for name in files:
+#             if name.endswith('.c'):
+#                 patched.append(os.path.join(root, name))
+#     if len(patched) == 0:
+#         print('no patch! ')
+#         return
+#     times = 0
+#     for p in patched:
+#         if not p.endswith('origin.c'):
+#             continue
+#         cmd = 'docker cp ' + p + ' ' + container.id + ':/experiment/src/' + patch_target[0]
+#         o, e = shellGitCheckout(cmd)
+#         client.containers.build(container)
+#         failure_cases, failure, total, test_outcomes = test_part(bug, container, client, tests_list)
+#         if failure == 0:
+#             times += 1
+#             print('fixed by {}'.format(p),end=' ')
+#         else:
+#             print('{} failed'.format(failure_cases),end=' ')
+#     print('times:{}'.format(times),end=' ')
+#     if times > 0:
+#         print('success ')
+#     else:
+#         print('failure ')
+
+
+# def patch_application(client: Client, container: Container, diff_files: list) -> None:
+#     result = None
+#     for unidiff in diff_files:
+#         if len(unidiff) < 5:
+#             continue
+#         # first, we build a Patch object using a unified-format diff
+#         patch = Patch.from_unidiff(unidiff)
+#
+#         # we then attempt to apply the patch to the source code
+#         re = client.containers.patch(container, patch)
+#         if not re:
+#             return False
+#         else:
+#             result = True
+#     # finally, we rebuild the program inside the container
+#     client.containers.build(container)
+#
+#     return result
+
+def patch_application_our(client: Client, container: Container,bug,tests_list,output):
+    result = None
+    times = 0
+    # patches_path = './data/manybugs_tian_patches4topC/' + bug.name + '/patches'
+    patches_path = join(PATCHES_DIR,bug.name,'patches')
+    # patches_path = './data/manybugs_tian_patches4topC/' + bug.name + '/patches'
+    for root, dirs, files in os.walk(patches_path):
+        for name in files:
+            if name.endswith('.txt'):
+                patch_file = os.path.join(root, name)
+                unidiff = ''
+                with open(patch_file, 'r') as file:
+                    for line in file.readlines():
+                        if line.startswith('---'):
+                            begin = line.index('/diffs')
+                            origin_begin = line.index('diffs') + 6
+                            unidiff += '--- /experiment' + line[begin:]
+                            preFile = line[origin_begin:line.index('\n')]
+                        elif line.startswith('+++'):
+                            begin = line.index('diffs') + 6
+                            ends = line.index('.c-')
+                            unidiff += line[:4] + line[begin:ends] + '.c' + '\n'
+                        else:
+                            unidiff += line
+                    cmd = 'cp ' + '../diffs/' + preFile + ' ' + preFile[:preFile.index('.c') + 2]
+                    # cmd += ' & ' + 'make -j$(nproc)'
+                    client.containers.exec(container=container, command=cmd, context='/experiment/src')
+                    diff_files = unidiff.strip()
+
+                    if len(unidiff) < 5:
+                        continue
+                    # first, we build a Patch object using a unified-format diff
+                    patch = Patch.from_unidiff(unidiff)
+
+                    # we then attempt to apply the patch to the source code
+                    re = client.containers.patch(container, patch)
+                    if not re:
+                        output += ' {} patch failed'.format(name)
+                    else:
+                        result = True
+                        # finally, we rebuild the program inside the container
+                        patch_result = client.containers.build(container)
+                        if patch_result.successful:
+                            failure_cases, failure, total, test_outcomes = test_part(bug, container, client, tests_list)
+                            if failure == 0:
+                                times += 1
+                                output+= ' fixed by {}'.format(name)
+                            else:
+                                output += ' {}'.format(failure_cases)
+                        else:
+                            output += ' {}'.format('build error')
+    output += ' times:{}'.format(times)
+    if times > 0:
+        output += ' success'
+    else:
+        output += ' failure'
+    return output
+
+
+def getClient(port):
+    cmd = 'bash {} {}'.format(join(DATA_PATH, 'startBugzoo.sh'), port)
+
+    with Popen(cmd, stdout=PIPE, stderr=PIPE, shell=True) as process:
+        # o,e = shellGitCheckout(cmd)
+        url = "http://127.0.0.1:{}".format(port)
+        timeout_connection = 3000
+        client = Client(url, timeout_connection=timeout_connection)
+        return client,process
+
+def validate():
+
+    buglist = ['manybugs:gmp:14166-14167', 'manybugs:gzip:2009-08-16-3fe0caeada-39a362ae9d',
+                 'manybugs:gzip:2009-10-09-1a085b1446-118a107f2d', 'manybugs:gzip:2010-02-19-3eb6091d69-884ef6d16c',
+                 'manybugs:libtiff:2005-12-21-3b848a7-3edb9cd', 'manybugs:libtiff:2006-03-03-a72cf60-0a36d7f',
+                 'manybugs:libtiff:2006-03-03-eec4c06-ee65c74', 'manybugs:libtiff:2007-07-13-09e8220-f2d989d',
+                 'manybugs:libtiff:2007-11-02-371336d-865f7b2', 'manybugs:libtiff:2009-02-05-764dbba-2e42d63',
+                 'manybugs:libtiff:2009-08-28-e8a47d4-023b6df', 'manybugs:libtiff:2010-11-27-eb326f9-eec7ec0',
+                 'manybugs:libtiff:2006-02-23-b2ce5d8-207c78a', 'manybugs:lighttpd:2661-2662',
+                 'manybugs:lighttpd:2254-2259', 'manybugs:lighttpd:2785-2786', 'manybugs:lighttpd:1948-1949',
+                 'manybugs:php:2011-12-10-74343ca506-52c36e60c4', 'manybugs:php:2011-04-02-70075bc84c-5a8c917c37',
+                 'manybugs:php:2011-03-25-8138f7de40-3acdca4703', 'manybugs:php:2011-12-04-1e6a82a1cf-dfa08dc325',
+                 'manybugs:php:2012-02-08-ff63c09e6f-6672171672', 'manybugs:php:2011-11-19-eeba0b5681-d3b20b4058',
+                 'manybugs:php:2011-04-07-77ed819430-efcb9a71cd', 'manybugs:php:2011-02-01-01745fa657-1f49902999',
+                 'manybugs:php:2012-03-12-7aefbf70a8-efc94f3115', 'manybugs:php:2011-10-15-0a1cc5f01c-05c5c8958e',
+                 'manybugs:php:2011-01-30-5bb0a44e06-1e91069eb4', 'manybugs:php:2011-02-01-fefe9fc5c7-0927309852',
+                 'manybugs:php:2011-02-27-e65d361fde-1d984a7ffd', 'manybugs:php:2011-03-19-5d0c948296-8deb11c0c3',
+                 'manybugs:php:2011-03-23-63673a533f-2adf58cfcf', 'manybugs:php:2011-04-06-187eb235fe-2e25ec9eb7',
+                 'manybugs:php:2011-04-09-db01e840c2-09b990f499', 'manybugs:php:2011-05-17-453c954f8a-daecb2c0f4',
+                 'manybugs:php:2011-05-24-b60f6774dc-1056c57fa9', 'manybugs:php:2011-10-16-1f78177e2b-d4ae4e79db',
+                 'manybugs:php:2011-10-31-2e5d5e5ac6-b5f15ef561', 'manybugs:php:2011-10-31-c4eb5f2387-2e5d5e5ac6',
+                 'manybugs:php:2011-11-01-ceac9dc490-9b0d73af1d', 'manybugs:php:2011-11-11-fcbfbea8d2-c1e510aea8',
+                 'manybugs:php:2011-11-15-236120d80e-fb37f3b20d', 'manybugs:php:2011-11-16-55acfdf7bd-3c7a573a2c',
+                 'manybugs:php:2011-11-22-ecc6c335c5-b548293b99', 'manybugs:php:2011-11-23-eca88d3064-db0888dfc1',
+                 'manybugs:php:2012-01-27-544e36dfff-acaf9c5227', 'manybugs:php:2012-01-30-9de5b6dc7c-4dc8b1ad11',
+                 'manybugs:php:2012-02-25-c1322d2505-cfa9c90b20', 'manybugs:php:2012-03-04-60dfd64bf2-34fe62619d',
+                 'manybugs:php:2012-03-08-0169020e49-cdc512afb3', 'manybugs:php:2012-03-11-3954743813-d4f05fbffc',
+                 'manybugs:php:2012-03-12-438a30f1e7-7337a901b7', 'manybugs:python:69223-69224',
+                 'manybugs:python:69368-69372', 'manybugs:python:70098-70101', 'manybugs:python:70056-70059',
+                 'manybugs:wireshark:37112-37111', 'manybugs:wireshark:37122-37123', 'manybugs:gmp:13420-13421',
+                 'manybugs:gzip:2009-09-26-a1d3d4019d-f17cbd13a1', 'manybugs:lighttpd:1913-1914',
+                 'manybugs:php:2011-11-19-51a4ae6576-bc810a443d', 'manybugs:php:2011-03-11-d890ece3fc-6e74d95f34',
+                 'manybugs:php:2011-11-19-eeba0b5681-f330c8ab4e', 'manybugs:php:2012-01-01-80dd931d40-7c3177e5ab']
+
+    port = 6000
+    bugList = []
+    for b in buglist:
+        if b == '.DS_Store':
+            continue
+        t = b, port
+        bugList.append(t)
+        if port == 6300:
+            port = 6000
+        port += 1
+
+    results = parallelRunMerge(patch_validate,bugList)
+
+    # #
+    with open(join(DATA_PATH, 'manyBugsResults'), 'w',
+              encoding='utf-8') as writeFile:
+        # if levelPatch == 0:
+        writeFile.write('\n'.join(results))
+    # patch_validate()
+    # pass
diff --git a/python/wmp00080.uni.lux.config.yml b/python/wmp00080.uni.lux.config.yml
new file mode 100644
index 0000000..68a6b02
--- /dev/null
+++ b/python/wmp00080.uni.lux.config.yml
@@ -0,0 +1,21 @@
+java:
+    8home:  /Library/Java/JavaVirtualMachines/jdk1.8.0_181.jdk/Contents/Home
+spinfer:
+    home:   /Users/anilkoyuncu/projects/fixminer/spinfer/spinfer.native
+    #home:   /Users/anil.koyuncu/projects/spinfer/spinfer.native
+dataset:
+#    home:   /Users/anil.koyuncu/projects/test/fixminer-core/python/data/gumInputLinux/
+    home:   /Users/anilkoyuncu/projects/fixminer/fixminer-core/python/data/gumInputLinux
+#    home:   /data/fixminer-core/python/data/gumInputLinux/
+    repo:   /Users/anil.koyuncu/projects/datasets
+
+coccinelle:
+    home:   /Users/anilkoyuncu/projects/fixminer/spinfer/statics
+    #home:   /Users/anil.koyuncu/projects/spinfer/statics
+
+
+fixminer:
+#    datapath: /Users/anil.koyuncu/projects/test/fixminer-core/python/data/
+    datapath: /Users/anilkoyuncu/projects/fixminer/fixminer-data/
+    projectType : c
+#    datapath: /data/fixminer-core/python/data/
diff --git a/worflow.png b/worflow.png
new file mode 100644
index 0000000..52ad8af
Binary files /dev/null and b/worflow.png differ