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Merge pull request #2 from SerVal-DTF/TreeDump

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Tree dump
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fixminer
2019-08-26 13:09:21 +02:00
committed by GitHub
parent 15aceec7ab ea93442150
commit 40cdf37974
133 changed files with 4271 additions and 2288 deletions
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.idea/.name
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FixPatternMiner
.idea/compiler.xml
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.idea/encodings.xml
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.idea/libraries/Maven__net_sourceforge_jexcelapi_jxl_2_6_12.xml
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+13
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<component name="libraryTable">
<library name="Maven: net.sourceforge.jexcelapi:jxl:2.6.12">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/net/sourceforge/jexcelapi/jxl/2.6.12/jxl-2.6.12.jar!/" />
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<JAVADOC>
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<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/net/sourceforge/jexcelapi/jxl/2.6.12/jxl-2.6.12-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_apache_commons_commons_lang3_3_1.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.apache.commons:commons-lang3:3.1">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/apache/commons/commons-lang3/3.1/commons-lang3-3.1.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/apache/commons/commons-lang3/3.1/commons-lang3-3.1-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/apache/commons/commons-lang3/3.1/commons-lang3-3.1-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_apache_commons_commons_lang3_3_7.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.apache.commons:commons-lang3:3.7">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_apache_commons_commons_pool2_2_4_2.xml
Generated
+13
View File
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<component name="libraryTable">
<library name="Maven: org.apache.commons:commons-pool2:2.4.2">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/apache/commons/commons-pool2/2.4.2/commons-pool2-2.4.2.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/apache/commons/commons-pool2/2.4.2/commons-pool2-2.4.2-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/apache/commons/commons-pool2/2.4.2/commons-pool2-2.4.2-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_apache_commons_commons_text_1_3.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.apache.commons:commons-text:1.3">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/apache/commons/commons-text/1.3/commons-text-1.3.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/apache/commons/commons-text/1.3/commons-text-1.3-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/apache/commons/commons-text/1.3/commons-text-1.3-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_apache_poi_poi_3_12.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.apache.poi:poi:3.12">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/apache/poi/poi/3.12/poi-3.12.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/apache/poi/poi/3.12/poi-3.12-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/apache/poi/poi/3.12/poi-3.12-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_apache_poi_poi_ooxml_3_12.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.apache.poi:poi-ooxml:3.12">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/apache/poi/poi-ooxml/3.12/poi-ooxml-3.12.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/apache/poi/poi-ooxml/3.12/poi-ooxml-3.12-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/apache/poi/poi-ooxml/3.12/poi-ooxml-3.12-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_apache_poi_poi_ooxml_schemas_3_12.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.apache.poi:poi-ooxml-schemas:3.12">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/apache/poi/poi-ooxml-schemas/3.12/poi-ooxml-schemas-3.12.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/apache/poi/poi-ooxml-schemas/3.12/poi-ooxml-schemas-3.12-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/apache/poi/poi-ooxml-schemas/3.12/poi-ooxml-schemas-3.12-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_apache_xmlbeans_xmlbeans_2_6_0.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.apache.xmlbeans:xmlbeans:2.6.0">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/apache/xmlbeans/xmlbeans/2.6.0/xmlbeans-2.6.0.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/apache/xmlbeans/xmlbeans/2.6.0/xmlbeans-2.6.0-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/apache/xmlbeans/xmlbeans/2.6.0/xmlbeans-2.6.0-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_eclipse_birt_runtime_org_eclipse_core_resources_3_10_0_v20150423_0755.xml
Generated
+13
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@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.eclipse.birt.runtime:org.eclipse.core.resources:3.10.0.v20150423-0755">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/birt/runtime/org.eclipse.core.resources/3.10.0.v20150423-0755/org.eclipse.core.resources-3.10.0.v20150423-0755.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/birt/runtime/org.eclipse.core.resources/3.10.0.v20150423-0755/org.eclipse.core.resources-3.10.0.v20150423-0755-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/birt/runtime/org.eclipse.core.resources/3.10.0.v20150423-0755/org.eclipse.core.resources-3.10.0.v20150423-0755-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_eclipse_core_contenttype_3_4_200_v20140207_1251.xml
Generated
+13
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@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.eclipse.core:contenttype:3.4.200-v20140207-1251">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/core/contenttype/3.4.200-v20140207-1251/contenttype-3.4.200-v20140207-1251.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/core/contenttype/3.4.200-v20140207-1251/contenttype-3.4.200-v20140207-1251-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/core/contenttype/3.4.200-v20140207-1251/contenttype-3.4.200-v20140207-1251-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_eclipse_core_jobs_3_6_0_v20140424_0053.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.eclipse.core:jobs:3.6.0-v20140424-0053">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/core/jobs/3.6.0-v20140424-0053/jobs-3.6.0-v20140424-0053.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/core/jobs/3.6.0-v20140424-0053/jobs-3.6.0-v20140424-0053-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/core/jobs/3.6.0-v20140424-0053/jobs-3.6.0-v20140424-0053-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_eclipse_core_runtime_3_10_0_v20140318_2214.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.eclipse.core:runtime:3.10.0-v20140318-2214">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/core/runtime/3.10.0-v20140318-2214/runtime-3.10.0-v20140318-2214.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/core/runtime/3.10.0-v20140318-2214/runtime-3.10.0-v20140318-2214-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/core/runtime/3.10.0-v20140318-2214/runtime-3.10.0-v20140318-2214-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_eclipse_equinox_app_1_3_200_v20130910_1609.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.eclipse.equinox:app:1.3.200-v20130910-1609">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/equinox/app/1.3.200-v20130910-1609/app-1.3.200-v20130910-1609.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/equinox/app/1.3.200-v20130910-1609/app-1.3.200-v20130910-1609-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/equinox/app/1.3.200-v20130910-1609/app-1.3.200-v20130910-1609-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_eclipse_equinox_common_3_6_200_v20130402_1505.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.eclipse.equinox:common:3.6.200-v20130402-1505">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/equinox/common/3.6.200-v20130402-1505/common-3.6.200-v20130402-1505.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/equinox/common/3.6.200-v20130402-1505/common-3.6.200-v20130402-1505-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/equinox/common/3.6.200-v20130402-1505/common-3.6.200-v20130402-1505-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_eclipse_equinox_preferences_3_5_200_v20140224_1527.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.eclipse.equinox:preferences:3.5.200-v20140224-1527">
<CLASSES>
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<JAVADOC>
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</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/equinox/preferences/3.5.200-v20140224-1527/preferences-3.5.200-v20140224-1527-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_eclipse_equinox_registry_3_5_400_v20140428_1507.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.eclipse.equinox:registry:3.5.400-v20140428-1507">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/equinox/registry/3.5.400-v20140428-1507/registry-3.5.400-v20140428-1507.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/equinox/registry/3.5.400-v20140428-1507/registry-3.5.400-v20140428-1507-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/equinox/registry/3.5.400-v20140428-1507/registry-3.5.400-v20140428-1507-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_eclipse_jetty_jetty_client_9_4_4_v20170414.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.eclipse.jetty:jetty-client:9.4.4.v20170414">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/jetty/jetty-client/9.4.4.v20170414/jetty-client-9.4.4.v20170414.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/jetty/jetty-client/9.4.4.v20170414/jetty-client-9.4.4.v20170414-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/jetty/jetty-client/9.4.4.v20170414/jetty-client-9.4.4.v20170414-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_eclipse_jetty_jetty_http_9_4_4_v20170414.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.eclipse.jetty:jetty-http:9.4.4.v20170414">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/jetty/jetty-http/9.4.4.v20170414/jetty-http-9.4.4.v20170414.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/jetty/jetty-http/9.4.4.v20170414/jetty-http-9.4.4.v20170414-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/jetty/jetty-http/9.4.4.v20170414/jetty-http-9.4.4.v20170414-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_eclipse_jetty_jetty_io_9_4_4_v20170414.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.eclipse.jetty:jetty-io:9.4.4.v20170414">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/jetty/jetty-io/9.4.4.v20170414/jetty-io-9.4.4.v20170414.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/jetty/jetty-io/9.4.4.v20170414/jetty-io-9.4.4.v20170414-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/jetty/jetty-io/9.4.4.v20170414/jetty-io-9.4.4.v20170414-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_eclipse_jetty_jetty_security_9_4_4_v20170414.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.eclipse.jetty:jetty-security:9.4.4.v20170414">
<CLASSES>
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</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/jetty/jetty-security/9.4.4.v20170414/jetty-security-9.4.4.v20170414-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/jetty/jetty-security/9.4.4.v20170414/jetty-security-9.4.4.v20170414-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_eclipse_jetty_jetty_server_9_4_4_v20170414.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.eclipse.jetty:jetty-server:9.4.4.v20170414">
<CLASSES>
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</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/jetty/jetty-server/9.4.4.v20170414/jetty-server-9.4.4.v20170414-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/jetty/jetty-server/9.4.4.v20170414/jetty-server-9.4.4.v20170414-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_eclipse_jetty_jetty_servlet_9_4_4_v20170414.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.eclipse.jetty:jetty-servlet:9.4.4.v20170414">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/jetty/jetty-servlet/9.4.4.v20170414/jetty-servlet-9.4.4.v20170414.jar!/" />
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<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/jetty/jetty-servlet/9.4.4.v20170414/jetty-servlet-9.4.4.v20170414-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/jetty/jetty-servlet/9.4.4.v20170414/jetty-servlet-9.4.4.v20170414-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_eclipse_jetty_jetty_util_9_4_4_v20170414.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.eclipse.jetty:jetty-util:9.4.4.v20170414">
<CLASSES>
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<JAVADOC>
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</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/jetty/jetty-util/9.4.4.v20170414/jetty-util-9.4.4.v20170414-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_eclipse_jetty_jetty_webapp_9_4_4_v20170414.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.eclipse.jetty:jetty-webapp:9.4.4.v20170414">
<CLASSES>
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</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/jetty/jetty-webapp/9.4.4.v20170414/jetty-webapp-9.4.4.v20170414-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/jetty/jetty-webapp/9.4.4.v20170414/jetty-webapp-9.4.4.v20170414-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_eclipse_jetty_jetty_xml_9_4_4_v20170414.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.eclipse.jetty:jetty-xml:9.4.4.v20170414">
<CLASSES>
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</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/jetty/jetty-xml/9.4.4.v20170414/jetty-xml-9.4.4.v20170414-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/jetty/jetty-xml/9.4.4.v20170414/jetty-xml-9.4.4.v20170414-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_eclipse_jetty_websocket_websocket_api_9_4_4_v20170414.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.eclipse.jetty.websocket:websocket-api:9.4.4.v20170414">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/jetty/websocket/websocket-api/9.4.4.v20170414/websocket-api-9.4.4.v20170414.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/jetty/websocket/websocket-api/9.4.4.v20170414/websocket-api-9.4.4.v20170414-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/jetty/websocket/websocket-api/9.4.4.v20170414/websocket-api-9.4.4.v20170414-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_eclipse_jetty_websocket_websocket_client_9_4_4_v20170414.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.eclipse.jetty.websocket:websocket-client:9.4.4.v20170414">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/jetty/websocket/websocket-client/9.4.4.v20170414/websocket-client-9.4.4.v20170414.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/jetty/websocket/websocket-client/9.4.4.v20170414/websocket-client-9.4.4.v20170414-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/jetty/websocket/websocket-client/9.4.4.v20170414/websocket-client-9.4.4.v20170414-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_eclipse_jetty_websocket_websocket_common_9_4_4_v20170414.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.eclipse.jetty.websocket:websocket-common:9.4.4.v20170414">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/jetty/websocket/websocket-common/9.4.4.v20170414/websocket-common-9.4.4.v20170414.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/jetty/websocket/websocket-common/9.4.4.v20170414/websocket-common-9.4.4.v20170414-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/jetty/websocket/websocket-common/9.4.4.v20170414/websocket-common-9.4.4.v20170414-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_eclipse_jetty_websocket_websocket_server_9_4_4_v20170414.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.eclipse.jetty.websocket:websocket-server:9.4.4.v20170414">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/jetty/websocket/websocket-server/9.4.4.v20170414/websocket-server-9.4.4.v20170414.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/jetty/websocket/websocket-server/9.4.4.v20170414/websocket-server-9.4.4.v20170414-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/jetty/websocket/websocket-server/9.4.4.v20170414/websocket-server-9.4.4.v20170414-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_eclipse_jetty_websocket_websocket_servlet_9_4_4_v20170414.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.eclipse.jetty.websocket:websocket-servlet:9.4.4.v20170414">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/jetty/websocket/websocket-servlet/9.4.4.v20170414/websocket-servlet-9.4.4.v20170414.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/jetty/websocket/websocket-servlet/9.4.4.v20170414/websocket-servlet-9.4.4.v20170414-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/jetty/websocket/websocket-servlet/9.4.4.v20170414/websocket-servlet-9.4.4.v20170414-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_eclipse_osgi_3_10_0_v20140606_1445.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.eclipse:osgi:3.10.0-v20140606-1445">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/osgi/3.10.0-v20140606-1445/osgi-3.10.0-v20140606-1445.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/osgi/3.10.0-v20140606-1445/osgi-3.10.0-v20140606-1445-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/osgi/3.10.0-v20140606-1445/osgi-3.10.0-v20140606-1445-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_eclipse_tycho_org_eclipse_jdt_core_3_12_2_v20161117_1814.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.eclipse.tycho:org.eclipse.jdt.core:3.12.2.v20161117-1814">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/tycho/org.eclipse.jdt.core/3.12.2.v20161117-1814/org.eclipse.jdt.core-3.12.2.v20161117-1814.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/tycho/org.eclipse.jdt.core/3.12.2.v20161117-1814/org.eclipse.jdt.core-3.12.2.v20161117-1814-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/eclipse/tycho/org.eclipse.jdt.core/3.12.2.v20161117-1814/org.eclipse.jdt.core-3.12.2.v20161117-1814-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_hamcrest_hamcrest_core_1_3.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.hamcrest:hamcrest-core:1.3">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/hamcrest/hamcrest-core/1.3/hamcrest-core-1.3.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/hamcrest/hamcrest-core/1.3/hamcrest-core-1.3-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/hamcrest/hamcrest-core/1.3/hamcrest-core-1.3-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_javassist_javassist_3_16_1_GA.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.javassist:javassist:3.16.1-GA">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/javassist/javassist/3.16.1-GA/javassist-3.16.1-GA.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/javassist/javassist/3.16.1-GA/javassist-3.16.1-GA-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/javassist/javassist/3.16.1-GA/javassist-3.16.1-GA-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_javatuples_javatuples_1_2.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.javatuples:javatuples:1.2">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/javatuples/javatuples/1.2/javatuples-1.2.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/javatuples/javatuples/1.2/javatuples-1.2-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/javatuples/javatuples/1.2/javatuples-1.2-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_reflections_reflections_0_9_9_RC1.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.reflections:reflections:0.9.9-RC1">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/reflections/reflections/0.9.9-RC1/reflections-0.9.9-RC1.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/reflections/reflections/0.9.9-RC1/reflections-0.9.9-RC1-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/reflections/reflections/0.9.9-RC1/reflections-0.9.9-RC1-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_rendersnake_rendersnake_1_8.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.rendersnake:rendersnake:1.8">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/rendersnake/rendersnake/1.8/rendersnake-1.8.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/rendersnake/rendersnake/1.8/rendersnake-1.8-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/rendersnake/rendersnake/1.8/rendersnake-1.8-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_scala_lang_modules_scala_java8_compat_2_11_0_7_0.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.scala-lang.modules:scala-java8-compat_2.11:0.7.0">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/scala-lang/modules/scala-java8-compat_2.11/0.7.0/scala-java8-compat_2.11-0.7.0.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/scala-lang/modules/scala-java8-compat_2.11/0.7.0/scala-java8-compat_2.11-0.7.0-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/scala-lang/modules/scala-java8-compat_2.11/0.7.0/scala-java8-compat_2.11-0.7.0-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_scala_lang_scala_library_2_11_8.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.scala-lang:scala-library:2.11.8">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/scala-lang/scala-library/2.11.8/scala-library-2.11.8.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/scala-lang/scala-library/2.11.8/scala-library-2.11.8-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/scala-lang/scala-library/2.11.8/scala-library-2.11.8-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_slf4j_slf4j_api_1_7_13.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.slf4j:slf4j-api:1.7.13">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/slf4j/slf4j-api/1.7.13/slf4j-api-1.7.13.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/slf4j/slf4j-api/1.7.13/slf4j-api-1.7.13-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/slf4j/slf4j-api/1.7.13/slf4j-api-1.7.13-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_slf4j_slf4j_api_1_7_21.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.slf4j:slf4j-api:1.7.21">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/slf4j/slf4j-api/1.7.21/slf4j-api-1.7.21.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/slf4j/slf4j-api/1.7.21/slf4j-api-1.7.21-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/slf4j/slf4j-api/1.7.21/slf4j-api-1.7.21-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_slf4j_slf4j_api_1_7_25.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.slf4j:slf4j-api:1.7.25">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/slf4j/slf4j-api/1.7.25/slf4j-api-1.7.25.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/slf4j/slf4j-api/1.7.25/slf4j-api-1.7.25-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/slf4j/slf4j-api/1.7.25/slf4j-api-1.7.25-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__org_slf4j_slf4j_api_1_7_7.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: org.slf4j:slf4j-api:1.7.7">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/slf4j/slf4j-api/1.7.7/slf4j-api-1.7.7.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/org/slf4j/slf4j-api/1.7.7/slf4j-api-1.7.7-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/org/slf4j/slf4j-api/1.7.7/slf4j-api-1.7.7-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__redis_clients_jedis_2_8_1.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: redis.clients:jedis:2.8.1">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/redis/clients/jedis/2.8.1/jedis-2.8.1.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/redis/clients/jedis/2.8.1/jedis-2.8.1-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/redis/clients/jedis/2.8.1/jedis-2.8.1-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__stax_stax_api_1_0_1.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: stax:stax-api:1.0.1">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/stax/stax-api/1.0.1/stax-api-1.0.1.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/stax/stax-api/1.0.1/stax-api-1.0.1-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/stax/stax-api/1.0.1/stax-api-1.0.1-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/libraries/Maven__xml_apis_xml_apis_1_0_b2.xml
Generated
+13
View File
@@ -0,0 +1,13 @@
<component name="libraryTable">
<library name="Maven: xml-apis:xml-apis:1.0.b2">
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/xml-apis/xml-apis/1.0.b2/xml-apis-1.0.b2.jar!/" />
</CLASSES>
<JAVADOC>
<root url="jar://$MAVEN_REPOSITORY$/xml-apis/xml-apis/1.0.b2/xml-apis-1.0.b2-javadoc.jar!/" />
</JAVADOC>
<SOURCES>
<root url="jar://$MAVEN_REPOSITORY$/xml-apis/xml-apis/1.0.b2/xml-apis-1.0.b2-sources.jar!/" />
</SOURCES>
</library>
</component>
.idea/misc.xml
Generated
+15
View File
@@ -0,0 +1,15 @@
<?xml version="1.0" encoding="UTF-8"?>
<project version="4">
<component name="MavenProjectsManager">
<option name="originalFiles">
<list>
<option value="$PROJECT_DIR$/pom.xml" />
<option value="$PROJECT_DIR$/../gumtree/pom.xml" />
<option value="$PROJECT_DIR$/../simple-utils/pom.xml" />
</list>
</option>
</component>
<component name="ProjectRootManager" version="2" languageLevel="JDK_1_8" project-jdk-name="1.8" project-jdk-type="JavaSDK">
<output url="file://$PROJECT_DIR$/classes" />
</component>
</project>
.idea/modules.xml
Generated
+14
View File
@@ -0,0 +1,14 @@
<?xml version="1.0" encoding="UTF-8"?>
<project version="4">
<component name="ProjectModuleManager">
<modules>
<module fileurl="file://$PROJECT_DIR$/FixPatternMiner.iml" filepath="$PROJECT_DIR$/FixPatternMiner.iml" />
<module fileurl="file://$PROJECT_DIR$/../gumtree/client/client.iml" filepath="$PROJECT_DIR$/../gumtree/client/client.iml" />
<module fileurl="file://$PROJECT_DIR$/../gumtree/client.diff/client.diff.iml" filepath="$PROJECT_DIR$/../gumtree/client.diff/client.diff.iml" />
<module fileurl="file://$PROJECT_DIR$/../gumtree/core/core.iml" filepath="$PROJECT_DIR$/../gumtree/core/core.iml" />
<module fileurl="file://$PROJECT_DIR$/../gumtree/gen.jdt/gen.jdt.iml" filepath="$PROJECT_DIR$/../gumtree/gen.jdt/gen.jdt.iml" />
<module fileurl="file://$PROJECT_DIR$/../gumtree/gumtree.iml" filepath="$PROJECT_DIR$/../gumtree/gumtree.iml" />
<module fileurl="file://$PROJECT_DIR$/../simple-utils/simple-utils.iml" filepath="$PROJECT_DIR$/../simple-utils/simple-utils.iml" />
</modules>
</component>
</project>
.idea/vcs.xml
Generated
+8
View File
@@ -0,0 +1,8 @@
<?xml version="1.0" encoding="UTF-8"?>
<project version="4">
<component name="VcsDirectoryMappings">
<mapping directory="$PROJECT_DIR$" vcs="Git" />
<mapping directory="$PROJECT_DIR$/../gumtree" vcs="Git" />
<mapping directory="$PROJECT_DIR$/../simple-utils" vcs="Git" />
</component>
</project>
.idea/workspace.xml
Generated
+1218
View File
File diff suppressed because it is too large Load Diff
FixPatternMiner.iml
+11 -10
View File
@@ -1,6 +1,6 @@
<?xml version="1.0" encoding="UTF-8"?>
<module org.jetbrains.idea.maven.project.MavenProjectsManager.isMavenModule="true" type="JAVA_MODULE" version="4">
<component name="NewModuleRootManager" LANGUAGE_LEVEL="JDK_1_8" inherit-compiler-output="false">
<component name="NewModuleRootManager" LANGUAGE_LEVEL="JDK_1_8">
<output url="file://$MODULE_DIR$/target/classes" />
<output-test url="file://$MODULE_DIR$/target/test-classes" />
<content url="file://$MODULE_DIR$">
@@ -10,7 +10,17 @@
</content>
<orderEntry type="inheritedJdk" />
<orderEntry type="sourceFolder" forTests="false" />
<orderEntry type="library" name="Maven: edu.lu.uni:simple-utils:0.0.1-SNAPSHOT" level="project" />
<orderEntry type="library" name="Maven: org.javatuples:javatuples:1.2" level="project" />
<orderEntry type="module" module-name="simple-utils" />
<orderEntry type="library" name="Maven: org.apache.poi:poi:3.12" level="project" />
<orderEntry type="library" name="Maven: commons-codec:commons-codec:1.9" level="project" />
<orderEntry type="library" name="Maven: org.apache.poi:poi-ooxml:3.12" level="project" />
<orderEntry type="library" name="Maven: org.apache.poi:poi-ooxml-schemas:3.12" level="project" />
<orderEntry type="library" name="Maven: org.apache.xmlbeans:xmlbeans:2.6.0" level="project" />
<orderEntry type="library" name="Maven: stax:stax-api:1.0.1" level="project" />
<orderEntry type="library" name="Maven: net.sourceforge.jexcelapi:jxl:2.6.12" level="project" />
<orderEntry type="library" name="Maven: log4j:log4j:1.2.14" level="project" />
<orderEntry type="library" name="Maven: com.typesafe.akka:akka-actor_2.11:2.4.11" level="project" />
<orderEntry type="library" name="Maven: org.scala-lang:scala-library:2.11.8" level="project" />
<orderEntry type="library" name="Maven: com.typesafe:config:1.3.0" level="project" />
@@ -18,18 +28,9 @@
<orderEntry type="module" module-name="core" />
<orderEntry type="library" name="Maven: com.github.mpkorstanje:simmetrics-core:3.0.3" level="project" />
<orderEntry type="library" name="Maven: com.google.guava:guava:18.0" level="project" />
<orderEntry type="library" name="Maven: commons-codec:commons-codec:1.10" level="project" />
<orderEntry type="library" name="Maven: net.sf.trove4j:trove4j:3.0.3" level="project" />
<orderEntry type="library" name="Maven: com.google.code.gson:gson:2.3" level="project" />
<orderEntry type="module" module-name="gen.jdt" />
<orderEntry type="library" name="Maven: edu.lu.uni:simple-utils:0.0.1-SNAPSHOT" level="project" />
<orderEntry type="library" name="Maven: org.apache.poi:poi:3.12" level="project" />
<orderEntry type="library" name="Maven: org.apache.poi:poi-ooxml:3.12" level="project" />
<orderEntry type="library" name="Maven: org.apache.poi:poi-ooxml-schemas:3.12" level="project" />
<orderEntry type="library" name="Maven: org.apache.xmlbeans:xmlbeans:2.6.0" level="project" />
<orderEntry type="library" name="Maven: stax:stax-api:1.0.1" level="project" />
<orderEntry type="library" name="Maven: net.sourceforge.jexcelapi:jxl:2.6.12" level="project" />
<orderEntry type="library" name="Maven: log4j:log4j:1.2.14" level="project" />
<orderEntry type="library" name="Maven: org.eclipse.core:runtime:3.10.0-v20140318-2214" level="project" />
<orderEntry type="library" name="Maven: org.eclipse:osgi:3.10.0-v20140606-1445" level="project" />
<orderEntry type="library" name="Maven: org.eclipse.equinox:common:3.6.200-v20130402-1505" level="project" />
difffile
+210
View File
@@ -0,0 +1,210 @@
diff --git a/.gitignore b/.gitignore
index 24cae48..27c7ba3 100644
--- a/.gitignore
+++ b/.gitignore
@@ -14,6 +14,7 @@ GumTreeInput/
GumTreeInput1/
GumTreeOutput1/
GumTreeResults/
+.idea/*
*/Test.java
*TestParser.java
diff --git a/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/FixedViolationHunkParser.java b/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/FixedViolationHunkParser.java
index 4d885ea..eb1eca1 100644
--- a/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/FixedViolationHunkParser.java
+++ b/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/FixedViolationHunkParser.java
@@ -1,5 +1,9 @@
package edu.lu.uni.serval.FixPatternParser.violations;
+import com.github.gumtreediff.actions.model.Delete;
+import com.github.gumtreediff.actions.model.Insert;
+import com.github.gumtreediff.actions.model.Move;
+import com.github.gumtreediff.actions.model.Update;
import edu.lu.uni.serval.gumtree.regroup.HierarchicalActionSet;
import java.io.*;
@@ -30,27 +34,29 @@ public class FixedViolationHunkParser extends FixedViolationParser {
public void parseFixPatterns(File prevFile, File revFile, File diffentryFile,String project) {
List<HierarchicalActionSet> actionSets = parseChangedSourceCodeWithGumTree2(prevFile, revFile);
if (actionSets.size() != 0) {
-// boolean isUpdate =
-// actionSets.stream().allMatch(p -> p.getAction() instanceof Update);
-// boolean isInsert =
-// actionSets.stream().allMatch(p -> p.getAction() instanceof Insert);
-// boolean isDelete =
-// actionSets.stream().allMatch(p -> p.getAction() instanceof Delete);
-// boolean isMove =
-// actionSets.stream().allMatch(p -> p.getAction() instanceof Move);
int hunkSet = 0;
// if (isUpdate || isInsert || isDelete || isMove) {
for (HierarchicalActionSet actionSet : actionSets) {
- String folder = "/ALL/";
-// if (isUpdate) {
-// folder = "/UPD/";
-// } else if (isDelete) {
-// folder = "/DEL/";
-// } else if (isInsert) {
-// folder = "/INS/";
-// } else if (isMove) {
-// folder = "/MOV/";
-// }
+ boolean isUpdate =
+ actionSets.stream().allMatch(p -> p.getAction() instanceof Update);
+ boolean isInsert =
+ actionSets.stream().allMatch(p -> p.getAction() instanceof Insert);
+ boolean isDelete =
+ actionSets.stream().allMatch(p -> p.getAction() instanceof Delete);
+ boolean isMove =
+ actionSets.stream().allMatch(p -> p.getAction() instanceof Move);
+ String folder = "/MIX/";
+ if (isUpdate) {
+ folder = "/UPD/";
+ } else if (isDelete) {
+ folder = "/DEL/";
+ } else if (isInsert) {
+ folder = "/INS/";
+ } else if (isMove) {
+ folder = "/MOV/";
+ } else{
+ folder = "/MIX/";
+ }
FileOutputStream f = null;
diff --git a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser/ParseFixPatternWorker.java b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser/ParseFixPatternWorker.java
index 3084dbe..ffe1b01 100644
--- a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser/ParseFixPatternWorker.java
+++ b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser/ParseFixPatternWorker.java
@@ -61,7 +61,7 @@ public class ParseFixPatternWorker extends UntypedActor {
int testInfos = 0;
int timeouts = 0;
StringBuilder builder = new StringBuilder();
-
+// log.info("Work queue size " + files.size());
for (MessageFile msgFile : files) {
File revFile = msgFile.getRevFile();
File prevFile = msgFile.getPrevFile();
diff --git a/src/main/java/edu/lu/uni/serval/config/Configuration.java b/src/main/java/edu/lu/uni/serval/config/Configuration.java
index 4421c72..7162180 100644
--- a/src/main/java/edu/lu/uni/serval/config/Configuration.java
+++ b/src/main/java/edu/lu/uni/serval/config/Configuration.java
@@ -2,6 +2,6 @@ package edu.lu.uni.serval.config;
public class Configuration {
- public static final long SECONDS_TO_WAIT = 900L;
+ public static final long SECONDS_TO_WAIT = 90000L;
}
diff --git a/src/main/java/edu/lu/uni/serval/fixminer/EnhancedASTDiff.java b/src/main/java/edu/lu/uni/serval/fixminer/EnhancedASTDiff.java
index 43895e0..066b07d 100644
--- a/src/main/java/edu/lu/uni/serval/fixminer/EnhancedASTDiff.java
+++ b/src/main/java/edu/lu/uni/serval/fixminer/EnhancedASTDiff.java
@@ -5,7 +5,7 @@ import akka.actor.ActorSystem;
import edu.lu.uni.serval.MultipleThreadsParser.MessageFile;
import edu.lu.uni.serval.MultipleThreadsParser.ParseFixPatternActor;
import edu.lu.uni.serval.MultipleThreadsParser.WorkMessage;
-import edu.lu.uni.serval.utils.FileHelper;
+import edu.lu.uni.serval.FixPattern.utils.FileHelper;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
@@ -13,6 +13,7 @@ import java.io.File;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.List;
+import java.util.Locale;
import java.util.stream.Collectors;
import java.util.stream.Stream;
@@ -31,6 +32,7 @@ public class EnhancedASTDiff {
Stream<File> stream = Arrays.stream(listOfFiles);
List<File> folders = stream
.filter(x -> !x.getName().startsWith("."))
+// .filter(x -> x.getName().startsWith("JDT"))
.collect(Collectors.toList());
@@ -49,11 +51,11 @@ public class EnhancedASTDiff {
FileHelper.createDirectory(GUM_TREE_OUTPUT + "/INS");
FileHelper.createDirectory(GUM_TREE_OUTPUT + "/DEL");
FileHelper.createDirectory(GUM_TREE_OUTPUT + "/MOV");
- FileHelper.createDirectory(GUM_TREE_OUTPUT + "/ALL");
+ FileHelper.createDirectory(GUM_TREE_OUTPUT + "/MIX");
int a = 0;
-
+ log.info("Work queue size " + msgFiles.size());
ActorSystem system = null;
ActorRef parsingActor = null;
final WorkMessage msg = new WorkMessage(0, msgFiles);
@@ -80,6 +82,11 @@ public class EnhancedASTDiff {
if (revFiles.length >= 0) {
for (File revFile : revFiles) {
String fileName = revFile.getName();
+ if(fileName.toLowerCase(Locale.ENGLISH).contains("test")){
+ log.info(fileName);
+ continue;
+ }
+
File prevFile = new File(gumTreeInput + "prevFiles/prev_" + fileName);// previous file
fileName = fileName.replace(".java", ".txt");
File diffentryFile = new File(gumTreeInput + "DiffEntries/" + fileName); // DiffEntry file
diff --git a/src/main/java/edu/lu/uni/serval/fixminer/TestHunkParserSingleFile.java b/src/main/java/edu/lu/uni/serval/fixminer/TestHunkParserSingleFile.java
index 44575a7..88f36c6 100644
--- a/src/main/java/edu/lu/uni/serval/fixminer/TestHunkParserSingleFile.java
+++ b/src/main/java/edu/lu/uni/serval/fixminer/TestHunkParserSingleFile.java
@@ -5,7 +5,7 @@ import akka.actor.ActorSystem;
import edu.lu.uni.serval.MultipleThreadsParser.MessageFile;
import edu.lu.uni.serval.MultipleThreadsParser.ParseFixPatternActor;
import edu.lu.uni.serval.MultipleThreadsParser.WorkMessage;
-import edu.lu.uni.serval.utils.FileHelper;
+import edu.lu.uni.serval.FixPattern.utils.FileHelper;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
diff --git a/src/main/java/edu/lu/uni/serval/fixminer/cluster/CallShell.java b/src/main/java/edu/lu/uni/serval/fixminer/cluster/CallShell.java
index 9c1d05d..3dceda0 100644
--- a/src/main/java/edu/lu/uni/serval/fixminer/cluster/CallShell.java
+++ b/src/main/java/edu/lu/uni/serval/fixminer/cluster/CallShell.java
@@ -37,7 +37,7 @@ public class CallShell {
}
// Thread.sleep(Integer.valueOf(serverWait));
- String cmd = "redis-cli -p %s ping";
+ String cmd = "bash source activate redisEnv && redis-cli -p %s ping";
String cmd1 = String.format(cmd,Integer.valueOf(port));
runPing(cmd1);
diff --git a/src/main/java/edu/lu/uni/serval/fixminer/cluster/StoreEDiffInCache.java b/src/main/java/edu/lu/uni/serval/fixminer/cluster/StoreEDiffInCache.java
index 39bba51..8657dce 100644
--- a/src/main/java/edu/lu/uni/serval/fixminer/cluster/StoreEDiffInCache.java
+++ b/src/main/java/edu/lu/uni/serval/fixminer/cluster/StoreEDiffInCache.java
@@ -52,13 +52,15 @@ public class StoreEDiffInCache {
.filter(x -> x.getName().startsWith("UPD") ||
x.getName().startsWith("INS") ||
x.getName().startsWith("DEL") ||
+ x.getName().startsWith("MIX") ||
x.getName().startsWith("MOV"))
.collect(Collectors.toList());
File[] files1 = fs.get(0).listFiles();
File[] files2 = fs.get(1).listFiles();
File[] files3 = fs.get(2).listFiles();
File[] files4 = fs.get(3).listFiles();
- dumps = Stream.of(files1, files2, files3,files4).flatMap(Stream::of).toArray(File[]::new);
+ File[] files5 = fs.get(4).listFiles();
+ dumps = Stream.of(files1, files2, files3,files4,files5).flatMap(Stream::of).toArray(File[]::new);
}else{
fs = fileStream
.filter(x -> x.getName().startsWith(operation))
@@ -70,7 +72,7 @@ public class StoreEDiffInCache {
for (File f : dumps) {
String name = f.getName();
- String key = pjName + "/"+ operation+"/" + name;
+ String key = pjName + f.getPath().replace(pj.getPath(),"");
String result = key +","+f.getPath();
workList.add(result);
}
pom.xml
+6 -6
View File
@@ -25,11 +25,11 @@
<version>1.2</version>
</dependency>
<!--<dependency>-->
<!--<groupId>edu.lu.uni</groupId>-->
<!--<artifactId>simple-utils</artifactId>-->
<!--<version>0.0.1-SNAPSHOT</version>-->
<!--</dependency>-->
<dependency>
<groupId>edu.lu.uni</groupId>
<artifactId>simple-utils</artifactId>
<version>0.0.1-SNAPSHOT</version>
</dependency>
<!-- akka -->
<dependency>
@@ -135,7 +135,7 @@
<archive>
<manifest>
<mainClass>
edu.lu.uni.serval.fixminer.Launcher
edu.lu.uni.serval.fixminer.akka.compare.CompareTrees
</mainClass>
</manifest>
</archive>
src/main/java/edu/lu/uni/serval/FixPattern/utils/EDiff.java
-98
View File
@@ -1,98 +0,0 @@
package edu.lu.uni.serval.FixPattern.utils;
import com.github.gumtreediff.actions.model.*;
import com.github.gumtreediff.tree.ITree;
import com.github.gumtreediff.tree.TreeContext;
import edu.lu.uni.serval.gumtree.regroup.HierarchicalActionSet;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import redis.clients.jedis.Jedis;
import redis.clients.jedis.JedisPool;
import java.io.IOException;
import java.util.List;
/**
* Created by anilkoyuncu on 17/09/2018.
*/
public class EDiff {
private static Logger log = LoggerFactory.getLogger(EDiff.class);
public static ITree getSimpliedTree(String fn, JedisPool outerPool) {
ITree tree = null;
Jedis inner = null;
try {
inner = outerPool.getResource();
while (!inner.ping().equals("PONG")){
log.info("wait");
}
inner.select(1);
String dist2load = inner.get(fn);
inner.select(0);
String s = inner.get(dist2load);
HierarchicalActionSet actionSet = (HierarchicalActionSet) EDiffHelper.fromString(s);
ITree parent = null;
ITree children =null;
TreeContext tc = new TreeContext();
tree = EDiffHelper.getASTTree(actionSet, parent, children,tc);
tree.setParent(null);
tc.validate();
} catch (IOException e) {
e.printStackTrace();
} catch (ClassNotFoundException e) {
e.printStackTrace();
}finally {
if (inner != null) {
inner.close();
}
}
return tree;
}
public static ITree getActionTree(HierarchicalActionSet actionSet, ITree parent, ITree children,TreeContext tc){
int newType = 0;
Action action = actionSet.getAction();
if (action instanceof Update){
newType = 101;
}else if(action instanceof Insert){
newType =100;
}else if(action instanceof Move){
newType = 102;
}else if(action instanceof Delete){
newType=103;
}else{
new Exception("unknow action");
}
if(actionSet.getParent() == null){
//root
parent = tc.createTree(newType, "", null);
tc.setRoot(parent);
// parent = new Tree(newType,"");
}else{
children = tc.createTree(newType, "", null);
children.setParentAndUpdateChildren(parent);
// children = new Tree(newType,"");
// parent.addChild(children);
}
List<HierarchicalActionSet> subActions = actionSet.getSubActions();
if (subActions.size() != 0){
for (HierarchicalActionSet subAction : subActions) {
if(actionSet.getParent() == null){
children = parent;
}
getActionTree(subAction,children,null,tc);
}
}
return parent;
}
}
src/main/java/edu/lu/uni/serval/FixPattern/utils/EDiffHelper.java
-88
View File
@@ -1,88 +0,0 @@
package edu.lu.uni.serval.FixPattern.utils;
import com.github.gumtreediff.tree.ITree;
import com.github.gumtreediff.tree.TreeContext;
import edu.lu.uni.serval.gumtree.regroup.HierarchicalActionSet;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import java.io.*;
import java.util.Base64;
import java.util.List;
import java.util.Map;
import java.util.Objects;
import java.util.stream.Collectors;
/**
* Created by anilkoyuncu on 17/09/2018.
*/
public class EDiffHelper {
private static Logger log = LoggerFactory.getLogger(EDiffHelper.class);
/** Read the object from Base64 string. */
public static Object fromString( String s ) throws IOException,
ClassNotFoundException {
byte [] data = Base64.getDecoder().decode( s );
ObjectInputStream ois = new ObjectInputStream(
new ByteArrayInputStream( data ) );
Object o = ois.readObject();
ois.close();
return o;
}
/** Write the object to a Base64 string. */
public static String toString( Serializable o ) throws IOException {
ByteArrayOutputStream baos = new ByteArrayOutputStream();
ObjectOutputStream oos = new ObjectOutputStream( baos );
oos.writeObject( o );
oos.close();
return Base64.getEncoder().encodeToString(baos.toByteArray());
}
public static ITree getASTTree(HierarchicalActionSet actionSet, ITree parent, ITree children, TreeContext tc){
int newType = 0;
String astNodeType = actionSet.getAstNodeType();
List<Integer> keysByValue = getKeysByValue(ASTNodeMap.map, astNodeType);
if(keysByValue.size() != 1){
log.error("More than 1");
}
newType = keysByValue.get(0);
if(actionSet.getParent() == null){
//root
// parent = new Tree(newType,"");
parent = tc.createTree(newType, "", null);
tc.setRoot(parent);
}else{
// children = new Tree(newType,"");
// parent.addChild(children);
children = tc.createTree(newType, "", null);
children.setParentAndUpdateChildren(parent);
}
List<HierarchicalActionSet> subActions = actionSet.getSubActions();
if (subActions.size() != 0){
for (HierarchicalActionSet subAction : subActions) {
if(actionSet.getParent() == null){
children = parent;
}
getASTTree(subAction,children,null,tc);
}
}
return parent;
}
public static <T, E> List<T> getKeysByValue(Map<T, E> map, E value) {
return map.entrySet()
.stream()
.filter(entry -> Objects.equals(entry.getValue(), value))
.map(Map.Entry::getKey)
.collect(Collectors.toList());
}
}
src/main/java/edu/lu/uni/serval/FixPatternParser/CUCreator.java
-55
View File
@@ -1,55 +0,0 @@
package edu.lu.uni.serval.FixPatternParser;
import org.eclipse.jdt.core.dom.AST;
import org.eclipse.jdt.core.dom.ASTParser;
import org.eclipse.jdt.core.dom.CompilationUnit;
import java.io.*;
/**
* Creator of a CompilationUnit.
*
* @author kui.liu
*
*/
public class CUCreator {
public CompilationUnit createCompilationUnit(File javaFile) {
CompilationUnit unit = null;
try {
char[] sourceCode = readFileToCharArray(new FileReader(javaFile));
ASTParser parser = createASTParser(sourceCode);
parser.setKind(ASTParser.K_COMPILATION_UNIT);
unit = (CompilationUnit) parser.createAST(null);
} catch (FileNotFoundException e) {
e.printStackTrace();
} catch (IOException e) {
e.printStackTrace();
}
return unit;
}
private ASTParser createASTParser(char[] javaCode) {
ASTParser parser = ASTParser.newParser(AST.JLS8);
parser.setSource(javaCode);
return parser;
}
private char[] readFileToCharArray(FileReader fileReader) throws IOException {
StringBuilder fileData = new StringBuilder();
BufferedReader br = new BufferedReader(fileReader);
char[] buf = new char[10];
int numRead = 0;
while ((numRead = br.read(buf)) != -1) {
String readData = String.valueOf(buf, 0, numRead);
fileData.append(readData);
buf = new char[1024];
}
br.close();
return fileData.toString().toCharArray();
}
}
src/main/java/edu/lu/uni/serval/FixPatternParser/violations/FixedViolationHunkParser.java
-87
View File
@@ -1,87 +0,0 @@
package edu.lu.uni.serval.FixPatternParser.violations;
import edu.lu.uni.serval.gumtree.regroup.HierarchicalActionSet;
import java.io.*;
import java.util.List;
/**
* Parse fix violations with GumTree in terms of multiple statements.
*
* @author kui.liu
*
*/
public class FixedViolationHunkParser extends FixedViolationParser {
public String testingInfo = "";
public int nullMappingGumTreeResult = 0;
public int pureDeletions = 0;
public int largeHunk = 0;
public int nullSourceCode = 0;
public int nullMatchedDiffEntry = 0;
public int testInfos = 0;
public String unfixedViolations = "";
@Override
public void parseFixPatterns(File prevFile, File revFile, File diffentryFile,String project) {
List<HierarchicalActionSet> actionSets = parseChangedSourceCodeWithGumTree2(prevFile, revFile);
if (actionSets.size() != 0) {
// boolean isUpdate =
// actionSets.stream().allMatch(p -> p.getAction() instanceof Update);
// boolean isInsert =
// actionSets.stream().allMatch(p -> p.getAction() instanceof Insert);
// boolean isDelete =
// actionSets.stream().allMatch(p -> p.getAction() instanceof Delete);
// boolean isMove =
// actionSets.stream().allMatch(p -> p.getAction() instanceof Move);
int hunkSet = 0;
// if (isUpdate || isInsert || isDelete || isMove) {
for (HierarchicalActionSet actionSet : actionSets) {
String folder = "/ALL/";
// if (isUpdate) {
// folder = "/UPD/";
// } else if (isDelete) {
// folder = "/DEL/";
// } else if (isInsert) {
// folder = "/INS/";
// } else if (isMove) {
// folder = "/MOV/";
// }
FileOutputStream f = null;
try {
// String pj = diffentryFile.getParent().split("Defects4J")[1];
String datasetName = project;
String[] split1 = diffentryFile.getParent().split(datasetName);
String root = split1[0];
String pj = split1[1].split("/")[1];
String hunkTreeFileName = root + "EnhancedASTDiff" + datasetName + "/" + pj + folder + diffentryFile.getName() + "_" + String.valueOf(hunkSet);
f = new FileOutputStream(new File(hunkTreeFileName));
ObjectOutputStream o = new ObjectOutputStream(f);
o.writeObject(actionSet);
o.close();
f.close();
} catch (FileNotFoundException e) {
e.printStackTrace();
} catch (IOException e) {
e.printStackTrace();
}
hunkSet++;
}
// }
}
}
}
src/main/java/edu/lu/uni/serval/MultipleThreadsParser/ParseFixPatternWorker.java
-139
View File
@@ -1,139 +0,0 @@
package edu.lu.uni.serval.MultipleThreadsParser;
import akka.actor.Props;
import akka.actor.UntypedActor;
import akka.japi.Creator;
import edu.lu.uni.serval.FixPatternParser.RunnableParser;
import edu.lu.uni.serval.FixPatternParser.violations.FixedViolationHunkParser;
import edu.lu.uni.serval.config.Configuration;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import java.io.File;
import java.util.List;
import java.util.concurrent.*;
public class ParseFixPatternWorker extends UntypedActor {
private static Logger log = LoggerFactory.getLogger(ParseFixPatternActor.class);
private String project;
public ParseFixPatternWorker(String project) {
this.project = project;
}
public static Props props(final String project) {
return Props.create(new Creator<ParseFixPatternWorker>() {
private static final long serialVersionUID = -7615153844097275009L;
@Override
public ParseFixPatternWorker create() throws Exception {
return new ParseFixPatternWorker(project);
}
});
}
@Override
public void onReceive(Object message) throws Exception {
if (message instanceof WorkMessage) {
WorkMessage msg = (WorkMessage) message;
List<MessageFile> files = msg.getMsgFiles();
StringBuilder editScripts = new StringBuilder();
StringBuilder patchesSourceCode = new StringBuilder();
StringBuilder sizes = new StringBuilder();
StringBuilder tokens = new StringBuilder();
StringBuilder testingInfo = new StringBuilder();
int id = msg.getId();
int counter = 0;
int nullGumTreeResults = 0;
int noSourceCodeChanges = 0;
int noStatementChanges = 0;
int nullDiffEntry = 0;
int nullMappingGumTreeResults = 0;
int pureDeletion = 0;
int largeHunk = 0;
int nullSourceCode = 0;
int testInfos = 0;
int timeouts = 0;
StringBuilder builder = new StringBuilder();
for (MessageFile msgFile : files) {
File revFile = msgFile.getRevFile();
File prevFile = msgFile.getPrevFile();
File diffentryFile = msgFile.getDiffEntryFile();
FixedViolationHunkParser parser = new FixedViolationHunkParser();
final ExecutorService executor = Executors.newSingleThreadExecutor();
// schedule the work
final Future<?> future = executor.submit(new RunnableParser(prevFile, revFile, diffentryFile, parser,project));
try {
// wait for task to complete
future.get(Configuration.SECONDS_TO_WAIT, TimeUnit.SECONDS);
nullDiffEntry += parser.nullMatchedDiffEntry;
nullMappingGumTreeResults += parser.nullMappingGumTreeResult;
pureDeletion += parser.pureDeletions;
largeHunk += parser.largeHunk;
nullSourceCode += parser.nullSourceCode;
testInfos += parser.testInfos;
testingInfo.append(parser.testingInfo);
builder.append(parser.unfixedViolations);
String editScript = parser.getAstEditScripts();
if ("".equals(editScript)) {
} else {
editScripts.append(editScript);
patchesSourceCode.append(parser.getPatchesSourceCode());
sizes.append(parser.getSizes());
tokens.append(parser.getTokensOfSourceCode());
counter ++;
if (counter % 100 == 0) {
editScripts.setLength(0);
patchesSourceCode.setLength(0);
sizes.setLength(0);
tokens.setLength(0);
log.info("Worker #" + id +" finialized parsing " + counter + " files...");
testingInfo.setLength(0);
}
}
} catch (TimeoutException e) {
future.cancel(true);
System.err.println("#Timeout: " + revFile.getName());
} catch (InterruptedException e) {
System.err.println("#TimeInterrupted: " + revFile.getName());
e.printStackTrace();
} catch (ExecutionException e) {
System.err.println("#TimeAborted: " + revFile.getName());
e.printStackTrace();
} finally {
executor.shutdownNow();
}
}
if (sizes.length() > 0) {
editScripts.setLength(0);
patchesSourceCode.setLength(0);
sizes.setLength(0);
tokens.setLength(0);
testingInfo.setLength(0);
}
log.info("Worker #" + id +"finialized parsing " + counter + " files...");
log.info("Worker #" + id + " finialized the work...");
this.getSender().tell("STOP", getSelf());
} else {
unhandled(message);
}
}
}
src/main/java/edu/lu/uni/serval/MultipleThreadsParser/WorkMessage.java
-24
View File
@@ -1,24 +0,0 @@
package edu.lu.uni.serval.MultipleThreadsParser;
import java.util.List;
public class WorkMessage {
private int id;
private List<MessageFile> msgFiles;
public WorkMessage(int id, List<MessageFile> msgFiles) {
super();
this.id = id;
this.msgFiles = msgFiles;
}
public int getId() {
return id;
}
public List<MessageFile> getMsgFiles() {
return msgFiles;
}
}
src/main/java/edu/lu/uni/serval/config/Configuration.java
-7
View File
@@ -1,7 +0,0 @@
package edu.lu.uni.serval.config;
public class Configuration {
public static final long SECONDS_TO_WAIT = 900L;
}
src/main/java/edu/lu/uni/serval/fixminer/EnhancedASTDiff.java
-101
View File
@@ -1,101 +0,0 @@
package edu.lu.uni.serval.fixminer;
import akka.actor.ActorRef;
import akka.actor.ActorSystem;
import edu.lu.uni.serval.MultipleThreadsParser.MessageFile;
import edu.lu.uni.serval.MultipleThreadsParser.ParseFixPatternActor;
import edu.lu.uni.serval.MultipleThreadsParser.WorkMessage;
import edu.lu.uni.serval.utils.FileHelper;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import java.io.File;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.List;
import java.util.stream.Collectors;
import java.util.stream.Stream;
public class EnhancedASTDiff {
private static Logger log = LoggerFactory.getLogger(EnhancedASTDiff.class);
public static void main(String inputPath, String outputPath,String numOfWorkers,String project) {
String parameters = String.format("\nInput path %s \nOutput path %s",inputPath,outputPath);
log.info(parameters);
File folder = new File(inputPath);
File[] listOfFiles = folder.listFiles();
Stream<File> stream = Arrays.stream(listOfFiles);
List<File> folders = stream
.filter(x -> !x.getName().startsWith("."))
.collect(Collectors.toList());
for (File target : folders) {
String pjName = target.getName();
final List<MessageFile> msgFiles = getMessageFiles(target.toString() + "/"); //"/Users/anilkoyuncu/bugStudy/code/python/GumTreeInput/Apache/CAMEL/"
System.out.println(msgFiles.size());
if(msgFiles.size() == 0)
continue;
String GUM_TREE_OUTPUT = outputPath + "/"+ pjName + "/";
FileHelper.createDirectory(GUM_TREE_OUTPUT + "/UPD");
FileHelper.createDirectory(GUM_TREE_OUTPUT + "/INS");
FileHelper.createDirectory(GUM_TREE_OUTPUT + "/DEL");
FileHelper.createDirectory(GUM_TREE_OUTPUT + "/MOV");
FileHelper.createDirectory(GUM_TREE_OUTPUT + "/ALL");
int a = 0;
ActorSystem system = null;
ActorRef parsingActor = null;
final WorkMessage msg = new WorkMessage(0, msgFiles);
try {
log.info("Akka begins...");
system = ActorSystem.create("Mining-FixPattern-System");
parsingActor = system.actorOf(ParseFixPatternActor.props(Integer.valueOf(numOfWorkers), project), "mine-fix-pattern-actor");
parsingActor.tell(msg, ActorRef.noSender());
} catch (Exception e) {
system.shutdown();
e.printStackTrace();
}
}
}
private static List<MessageFile> getMessageFiles(String gumTreeInput) {
String inputPath = gumTreeInput; // prevFiles revFiles diffentryFile positionsFile
File revFilesPath = new File(inputPath + "revFiles/");
File[] revFiles = revFilesPath.listFiles(); // project folders
List<MessageFile> msgFiles = new ArrayList<>();
if (revFiles.length >= 0) {
for (File revFile : revFiles) {
String fileName = revFile.getName();
File prevFile = new File(gumTreeInput + "prevFiles/prev_" + fileName);// previous file
fileName = fileName.replace(".java", ".txt");
File diffentryFile = new File(gumTreeInput + "DiffEntries/" + fileName); // DiffEntry file
MessageFile msgFile = new MessageFile(revFile, prevFile, diffentryFile);
msgFiles.add(msgFile);
}
return msgFiles;
}
else{
return null;
}
}
}
src/main/java/edu/lu/uni/serval/fixminer/Launcher.java
+33 -28
View File
@@ -1,6 +1,7 @@
package edu.lu.uni.serval.fixminer;
import edu.lu.uni.serval.fixminer.cluster.*;
import edu.lu.uni.serval.fixminer.jobs.*;
import edu.lu.uni.serval.utils.CallShell;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
@@ -26,34 +27,36 @@ public class Launcher {
appProps.load(new FileInputStream(appConfigPath));
String portInner = appProps.getProperty("portInner","6380");
// String serverWait = appProps.getProperty("serverWait", "50000");
String numOfWorkers = appProps.getProperty("numOfWorkers", "10");
String jobType = appProps.getProperty("jobType","ALL");
String portDumps = appProps.getProperty("portDumps","6399");
String pythonPath = appProps.getProperty("pythonPath","/Users/anilkoyuncu/bugStudy/code/python");
String datasetPath = appProps.getProperty("datasetPath","/Users/anilkoyuncu/bugStudy/dataset");
String pjName = appProps.getProperty("pjName","allDataset");
// String dbNo = appProps.getProperty("dbNo","0");
String actionType = appProps.getProperty("actionType","ALL");
String threshold = appProps.getProperty("threshold","1");
String cursor = appProps.getProperty("cursor","10000000");
String chunk = appProps.getProperty("chunk","1.txt");
String eDiffTimeout = appProps.getProperty("eDiffTimeout","900");
String isBig = appProps.getProperty("isBigPair","true");
String parallelism = appProps.getProperty("parallelism","FORKJOIN");
boolean isBigPair = Boolean.parseBoolean(isBig);
String parameters = String.format("\nportInner %s " +
"\nnumOfWorkers %s " +
"\njobType %s \nport %s " +
"\npythonPath %s \ndatasetPath %s" +
"\npjName %s \nactionType %s \nthreshold %s \ncursor %s"
, portInner, numOfWorkers, jobType, portDumps, pythonPath,datasetPath,pjName,actionType,threshold,cursor);
"\npjName %s \nactionType %s \nthreshold %s \ncursor %s \neDiffTimeout %s \nisBigPair %s \nparallelism %s"
, portInner, numOfWorkers, jobType, portDumps, pythonPath,datasetPath,pjName,actionType,threshold,cursor,eDiffTimeout,isBig,parallelism);
log.info(parameters);
mainLaunch(portInner, numOfWorkers, jobType, portDumps, pythonPath,datasetPath,pjName,actionType,threshold,cursor,chunk);
mainLaunch(portInner, numOfWorkers, jobType, portDumps, pythonPath,datasetPath,pjName,actionType,threshold,cursor,chunk,eDiffTimeout,isBigPair,parallelism);
}
public static void mainLaunch(String portInner, String numOfWorkers, String jobType, String portDumps, String pythonPath, String datasetPath, String pjName, String actionType, String threshold, String cursor, String chunk){
public static void mainLaunch(String portInner, String numOfWorkers, String jobType, String portDumps, String pythonPath, String datasetPath, String pjName, String actionType, String threshold, String cursor, String chunk, String eDiffTimeout, boolean isBigPair, String parallelism){
String dbDir;
@@ -65,35 +68,37 @@ public class Launcher {
gumInput = datasetPath +"/"+pjName+"/";
gumOutput = datasetPath + "/EnhancedASTDiff" + pjName;
dbDir = datasetPath + "/redis";
pairsPath = datasetPath + "/pairsImport"+pjName;
pairsPath = datasetPath + "/pairs";
dumpsName = "dumps-"+pjName+".rdb";
int iCursor = Integer.valueOf(cursor);
try {
switch (jobType) {
case "ENHANCEDASTDIFF":
EnhancedASTDiff.main(gumInput, gumOutput, numOfWorkers, pjName);
EnhancedASTDiff.main(gumInput, gumOutput, numOfWorkers, pjName, eDiffTimeout,actionType,parallelism);
break;
case "CACHE":
StoreEDiffInCache.main(gumOutput, portDumps, dbDir, actionType+dumpsName,actionType);
break;
case "SI":
CalculatePairs.main(dbDir, actionType+dumpsName, portDumps, pairsPath+actionType, pjName+actionType);
ImportPairs2DB.main(pairsPath+actionType, portInner, dbDir,datasetPath);
// CalculatePairs.main(dbDir, actionType+dumpsName, portDumps, pairsPath+actionType, pjName+actionType,isBigPair,iCursor);
ImportPairs2DB.main(pairsPath, portInner, dbDir,datasetPath,chunk);
break;
case "SIMI":
AkkaTreeLoader.main(portInner, dbDir, pjName +actionType+chunk+".rdb" , portDumps, actionType+dumpsName,pairsPath+actionType,numOfWorkers,cursor,chunk);
AkkaTreeLoader.main(portInner, dbDir, "pairs.rdb" , portDumps, actionType+dumpsName,pairsPath,numOfWorkers,iCursor,chunk,eDiffTimeout,parallelism);
break;
case "LEVEL1":
level1(portInner, portDumps, pythonPath, datasetPath, pjName, actionType, threshold, dbDir, pairsPath, dumpsName, gumInput);
String indexFile = pairsPath+actionType + "/" +pjName+actionType+".index";
level1(portInner, portDumps, pythonPath, datasetPath, pjName, actionType, threshold, dbDir, gumInput,iCursor,indexFile);
break;
//CALC python abstractPatch.py to from cluster folder
case "LEVEL2":
level2(portDumps, pythonPath, datasetPath, pjName, actionType, threshold, dbDir, dumpsName, gumInput);
level2(portDumps, pythonPath, datasetPath, pjName, actionType, threshold, dbDir, dumpsName, gumInput,iCursor);
break;
//CALC via python
case "LEVEL3":
level3(portDumps, pythonPath, datasetPath, pjName, actionType, threshold, dbDir, dumpsName, gumInput);
level3(portDumps, pythonPath, datasetPath, pjName, actionType, threshold, dbDir, dumpsName, gumInput,iCursor);
break;
case "EXTRACTPATTERN":
PatternExtractor.mainLaunch(portInner,numOfWorkers,jobType,portDumps,pythonPath,datasetPath,pjName,actionType,threshold);
@@ -111,17 +116,17 @@ public class Launcher {
}
private static void level1(String portInner, String port, String pythonPath, String datasetPath, String pjName, String actionType, String threshold, String dbDir, String pairsPath, String dumpsName, String gumInput) throws Exception {
private static void level1(String portInner, String port, String pythonPath, String datasetPath, String pjName, String actionType, String threshold, String dbDir, String gumInput,int cursor,String indexFile) throws Exception {
TreeLoaderClusterL1.main(portInner, port, dbDir, "level1-"+pjName+ actionType+".rdb", dbDir ,pjName + actionType);
TreeLoaderClusterL1.main(portInner, port, dbDir, "level1-"+pjName+ actionType+".rdb", dbDir ,pjName + actionType,cursor);
CallShell cs1 =new CallShell();
String db1 = "bash "+dbDir + "/" + "startServer.sh" +" %s %s %s";
String db11 = String.format(db1, dbDir,"level1-"+pjName+ actionType+".rdb" ,Integer.valueOf(port));
cs1.runShell(db11, port);
String runpy = "bash "+datasetPath + "/" + "launchPy.sh" +" %s %s %s %s %s %s";
String formatRunPy = String.format(runpy,pythonPath +"/abstractPatch.py", gumInput, datasetPath + "/cluster"+pjName+ actionType, port, "matches" + pjName + actionType, threshold);
String runpy = "bash "+datasetPath + "/" + "launchPy.sh" +" %s %s %s %s %s %s %s";
String formatRunPy = String.format(runpy,pythonPath +"/abstractPatch.py", gumInput, datasetPath + "/cluster"+pjName+ actionType, port, "matches" + pjName + actionType, threshold,indexFile);
cs1.runShell(formatRunPy);
String stopServer = "bash "+dbDir + "/" + "stopServer.sh" +" %s";
@@ -129,18 +134,18 @@ public class Launcher {
cs1.runShell(stopServer, port);
}
private static void level2(String port, String pythonPath, String datasetPath, String pjName, String actionType, String threshold, String dbDir, String dumpsName, String gumInput) throws Exception {
private static void level2(String port, String pythonPath, String datasetPath, String pjName, String actionType, String threshold, String dbDir, String dumpsName, String gumInput,int cursor) throws Exception {
String stopServer;
MultiThreadTreeLoaderCluster.calculatePairsOfClusters(datasetPath + "/cluster"+pjName+ actionType, datasetPath,actionType);
// MultiThreadTreeLoaderCluster.calculatePairsOfClusters(datasetPath + "/cluster"+pjName+ actionType, datasetPath,actionType);
MultiThreadTreeLoaderCluster.mainCompare("6300", datasetPath+"/pairs"+actionType, datasetPath + "/redisSingleImport.sh", dbDir, "clusterl1-"+pjName+actionType+".rdb", actionType+dumpsName, "6301",actionType);
MultiThreadTreeLoaderCluster.mainCompare(port, datasetPath+"/pairsAction", datasetPath + "/redisSingleImport.sh", dbDir, "clusterl1-"+pjName+actionType+".rdb", actionType+dumpsName, "6380",actionType,cursor);
CallShell cs3 =new CallShell();
String db22 = "bash "+dbDir + "/" + "startServer.sh" +" %s %s %s";
String db1b = String.format(db22, dbDir,"clusterl1-"+pjName+actionType+".rdb",Integer.valueOf(port));
cs3.runShell(db1b, port);
String runpy2 = "bash "+datasetPath + "/" + "launchPy.sh" +" %s %s %s %s %s %s";
String formatRunPy1a = String.format(runpy2,pythonPath +"/abstractPatchCluster.py", gumInput, datasetPath + "/cluster"+pjName+ actionType, port, datasetPath + "/cluster-2l"+pjName+ actionType,threshold);
String runpy2 = "bash "+datasetPath + "/" + "launchPy.sh" +" %s %s %s %s %s %s %s";
String formatRunPy1a = String.format(runpy2,pythonPath +"/abstractPatchCluster.py", gumInput, datasetPath + "/cluster"+pjName+ actionType, port, datasetPath + "/cluster-2l"+pjName+ actionType,threshold,"dummy");
cs3.runShell(formatRunPy1a);
String stopServer1a = "bash "+dbDir + "/" + "stopServer.sh" +" %s";
@@ -148,18 +153,18 @@ public class Launcher {
cs3.runShell(stopServer, port);
}
private static void level3(String port, String pythonPath, String datasetPath, String pjName, String actionType, String threshold, String dbDir, String dumpsName, String gumInput) throws Exception {
private static void level3(String port, String pythonPath, String datasetPath, String pjName, String actionType, String threshold, String dbDir, String dumpsName, String gumInput,int cursor) throws Exception {
String stopServer;
MultiThreadTreeLoaderCluster3.calculatePairsOfClusters(datasetPath + "/cluster-2l"+pjName+ actionType, datasetPath,actionType);
MultiThreadTreeLoaderCluster3.mainCompare("6300", datasetPath+"/pairs-2l"+actionType, datasetPath + "/redisSingleImport.sh", dbDir, "clusterl2-"+pjName+actionType+".rdb", actionType+dumpsName, "6301",actionType);
MultiThreadTreeLoaderCluster3.mainCompare("6300", datasetPath+"/pairs-2l"+actionType, datasetPath + "/redisSingleImport.sh", dbDir, "clusterl2-"+pjName+actionType+".rdb", actionType+dumpsName, "6301",actionType,cursor);
CallShell cs5 =new CallShell();
String dba = "bash "+dbDir + "/" + "startServer.sh" +" %s %s %s";
String dbaa = String.format(dba, dbDir,"clusterl2-"+pjName+actionType+".rdb",Integer.valueOf(port));
cs5.runShell(dbaa, port);
String runpya = "bash "+datasetPath + "/" + "launchPy.sh" +" %s %s %s %s %s %s";
String formatRunPya = String.format(runpya,pythonPath +"/abstractPatchClusterLevel3.py", gumInput, datasetPath + "/cluster-3l"+pjName+ actionType, port, datasetPath + "/cluster-2l"+pjName+ actionType,threshold);
String runpya = "bash "+datasetPath + "/" + "launchPy.sh" +" %s %s %s %s %s %s %s";
String formatRunPya = String.format(runpya,pythonPath +"/abstractPatchClusterLevel3.py", gumInput, datasetPath + "/cluster-3l"+pjName+ actionType, port, datasetPath + "/cluster-2l"+pjName+ actionType,threshold,"dummy");
cs5.runShell(formatRunPya);
String stopServera = "bash "+dbDir + "/" + "stopServer.sh" +" %s";
src/main/java/edu/lu/uni/serval/fixminer/TestHunkParserSingleFile.java
-239
View File
@@ -1,239 +0,0 @@
package edu.lu.uni.serval.fixminer;
import akka.actor.ActorRef;
import akka.actor.ActorSystem;
import edu.lu.uni.serval.MultipleThreadsParser.MessageFile;
import edu.lu.uni.serval.MultipleThreadsParser.ParseFixPatternActor;
import edu.lu.uni.serval.MultipleThreadsParser.WorkMessage;
import edu.lu.uni.serval.utils.FileHelper;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import java.io.File;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.List;
import java.util.stream.Collectors;
import java.util.stream.Stream;
public class TestHunkParserSingleFile {
private static Logger log = LoggerFactory.getLogger(TestHunkParserSingleFile.class);
public static void main(String[] args) {
// input data
// String rootPath = "/Users/anilkoyuncu/bugStudy";
String inputPath;
String outputPath;
if(args.length > 0){
inputPath = args[1];
outputPath = args[0];
}else{
// inputPath = "/Users/anilkoyuncu/bugStudy/dataset/GumTreeInputBug4";
inputPath = "/Users/anilkoyuncu/bugStudy/dataset/allDataset";
// outputPath = "/Users/anilkoyuncu/bugStudy/code/python/GumTreeOutput2/";
outputPath = "/Users/anilkoyuncu/bugStudy/dataset/GumTreeOutputSingle";
}
//5d9d60_76f5be_components#camel-jaxb#src#test#java#org#apache#camel#jaxb#FallbackTypeConverterShouldNotThrowExceptionTest.txt_1_CAMEL
File folder = new File(inputPath);
File[] listOfFiles = folder.listFiles();
Stream<File> stream = Arrays.stream(listOfFiles);
List<File> folders = stream
.filter(x -> !x.getName().startsWith("."))
.collect(Collectors.toList());
// List<File> targetList = new ArrayList<File>();
// for (File f:folders){
// for(File f1 :f.listFiles()){
// if (!f1.getName().startsWith(".")){
// targetList.add(f1);
// }
// }
// }
// List<String> pjList = Arrays.asList("DATAJPA","ZXing","PDE","SWS","SWT", "SWF", "COLLECTIONS", "JDT");
List<String> files = new ArrayList<String>();
// files.add("5d9d60_76f5be_components#camel-jaxb#src#test#java#org#apache#camel#jaxb#FallbackTypeConverterShouldNotThrowExceptionTest.java");
files.add("d6c5e5_9f96d9_hbase-server#src#main#java#org#apache#hadoop#hbase#master#RegionStates.java");
for(String f : files){
String pjName = "HBASE";
// for (File target : folders) {
// String pjName = target.getName();
// if (!pjList.contains(pjName)){
// continue;
// }
// final List<MessageFile> msgFiles = getMessageFiles(target.toString() + "/"); //"/Users/anilkoyuncu/bugStudy/code/python/GumTreeInput/Apache/CAMEL/"
MessageFile messageFile = getMessageFile(inputPath + "/" + pjName +"/", f);
List<MessageFile> msgFiles = new ArrayList<>();
msgFiles.add(messageFile);
String GUM_TREE_OUTPUT = outputPath + "/"+ pjName + "/";
final String editScriptsFilePath = GUM_TREE_OUTPUT + "editScripts.list";
final String patchesSourceCodeFilePath =GUM_TREE_OUTPUT + "patchSourceCode.list";
final String buggyTokensFilePath = GUM_TREE_OUTPUT + "tokens.list";
final String editScriptSizesFilePath = GUM_TREE_OUTPUT + "editScriptSizes.csv";
final String alarmTypesFilePath = GUM_TREE_OUTPUT + "alarmTypes.list";
FileHelper.createDirectory(GUM_TREE_OUTPUT + "/ActionSetDumps");
FileHelper.deleteDirectory(editScriptsFilePath);
FileHelper.deleteDirectory(patchesSourceCodeFilePath);
FileHelper.deleteDirectory(buggyTokensFilePath);
FileHelper.deleteDirectory(editScriptSizesFilePath);
FileHelper.deleteDirectory(alarmTypesFilePath);
StringBuilder astEditScripts = new StringBuilder();
StringBuilder tokens = new StringBuilder();
StringBuilder sizes = new StringBuilder();
StringBuilder patches = new StringBuilder();
StringBuilder alarmTypes = new StringBuilder();
// int a = 0;
ActorSystem system = null;
ActorRef parsingActor = null;
final WorkMessage msg = new WorkMessage(0, msgFiles);
try {
log.info("Akka begins...");
system = ActorSystem.create("Mining-FixPattern-System");
parsingActor = system.actorOf(ParseFixPatternActor.props(1, "dataset"), "mine-fix-pattern-actor");
parsingActor.tell(msg, ActorRef.noSender());
} catch (Exception e) {
system.shutdown();
e.printStackTrace();
}
// int counter = 0;
// for (MessageFile msgFile : msgFiles) {
// FixedViolationHunkParser parser = new FixedViolationHunkParser();
//
// final ExecutorService executor = Executors.newSingleThreadExecutor();
// // schedule the work
// final Future<?> future = executor.submit(new RunnableParser(msgFile.getPrevFile(),
// msgFile.getRevFile(), msgFile.getDiffEntryFile(), parser));
// try {
// // where we wait for task to complete
// future.get(Configuration.SECONDS_TO_WAIT, TimeUnit.SECONDS);
// String editScripts = parser.getAstEditScripts();
// if (!editScripts.equals("")) {
// astEditScripts.append(editScripts);
// tokens.append(parser.getTokensOfSourceCode());
// sizes.append(parser.getSizes());
// patches.append(parser.getPatchesSourceCode());
// alarmTypes.append(parser.getAlarmTypes());
//
// a++;
// if (a % 100 == 0) {
// FileHelper.outputToFile(editScriptsFilePath, astEditScripts, true);
// FileHelper.outputToFile(buggyTokensFilePath, tokens, true);
// FileHelper.outputToFile(editScriptSizesFilePath, sizes, true);
// FileHelper.outputToFile(patchesSourceCodeFilePath, patches, true);
// FileHelper.outputToFile(alarmTypesFilePath, alarmTypes, true);
// astEditScripts.setLength(0);
// tokens.setLength(0);
// sizes.setLength(0);
// patches.setLength(0);
// alarmTypes.setLength(0);
// System.out.println("Finish of parsing " + a + " files......");
// }
// }
// } catch (TimeoutException e) {
// err.println("task timed out");
// future.cancel(true /* mayInterruptIfRunning */);
// } catch (InterruptedException e) {
// err.println("task interrupted");
// } catch (ExecutionException e) {
// err.println("task aborted");
// } finally {
// executor.shutdownNow();
// }
// }
FileHelper.outputToFile(editScriptsFilePath, astEditScripts, true);
FileHelper.outputToFile(buggyTokensFilePath, tokens, true);
FileHelper.outputToFile(editScriptSizesFilePath, sizes, true);
FileHelper.outputToFile(patchesSourceCodeFilePath, patches, true);
FileHelper.outputToFile(alarmTypesFilePath, alarmTypes, true);
astEditScripts.setLength(0);
tokens.setLength(0);
sizes.setLength(0);
patches.setLength(0);
alarmTypes.setLength(0);
// classifyByAlarmTypes();
}
}
private static List<MessageFile> getMessageFiles(String gumTreeInput) {
String inputPath = gumTreeInput; // prevFiles revFiles diffentryFile positionsFile
File revFilesPath = new File(inputPath + "revFiles/");
File[] revFiles = revFilesPath.listFiles(); // project folders
List<MessageFile> msgFiles = new ArrayList<>();
// gumTreeInput = /Volumes/data/bugStudy_backup/dataset/GumTreeInputBug4/AMQP/
// fileName = 01534a_df5570_spring-rabbit#src#test#java#org#springframework#amqp#rabbit#listener#LocallyTransactedTests.java
if (revFiles.length >= 0) {
for (File revFile : revFiles) {
// if (revFile.getName().endsWith(".java")) {
String fileName = revFile.getName();
File prevFile = new File(gumTreeInput + "prevFiles/prev_" + fileName);// previous file
fileName = fileName.replace(".java", ".txt");
File diffentryFile = new File(gumTreeInput + "DiffEntries/" + fileName); // DiffEntry file
File positionFile = new File(gumTreeInput + "positions/" + fileName); // position file
MessageFile msgFile = new MessageFile(revFile, prevFile, diffentryFile);
msgFile.setPositionFile(positionFile);
msgFiles.add(msgFile);
// }
}
return msgFiles;
}
else{
return null;
}
}
private static MessageFile getMessageFile(String gumTreeInput, String fileName) {
// String inputPath = gumTreeInput; // prevFiles revFiles diffentryFile positionsFile
// File revFilesPath = new File(inputPath + "revFiles/");
// File[] revFiles = revFilesPath.listFiles(); // project folders
// List<MessageFile> msgFiles = new ArrayList<>();
// gumTreeInput = /Volumes/data/bugStudy_backup/dataset/GumTreeInputBug4/AMQP/
// fileName = 01534a_df5570_spring-rabbit#src#test#java#org#springframework#amqp#rabbit#listener#LocallyTransactedTests.java
// if (revFiles.length >= 0) {
// for (File revFile : revFiles) {
// if (revFile.getName().endsWith(".java")) {
// String fileName = revFile.getName();
File revFile = new File(gumTreeInput + "revFiles/"+fileName);
File prevFile = new File(gumTreeInput + "prevFiles/prev_" + fileName);// previous file
fileName = fileName.replace(".java", ".txt");
File diffentryFile = new File(gumTreeInput + "DiffEntries/" + fileName); // DiffEntry file
// File positionFile = new File(gumTreeInput + "positions/" + fileName); // position file
MessageFile msgFile = new MessageFile(revFile, prevFile, diffentryFile);
return msgFile;
// msgFile.setPositionFile(positionFile);
// msgFiles.add(msgFile);
// }
// }
//
// return msgFiles;
// }
// else{
// return null;
// }
}
}
src/main/java/edu/lu/uni/serval/fixminer/akka/BaseMessage.java
+46
View File
@@ -0,0 +1,46 @@
package edu.lu.uni.serval.fixminer.akka;
/**
* Created by anilkoyuncu on 18/09/2018.
*/
public class BaseMessage {
private long SECONDS_TO_WAIT;
private int id;
private int threadPoolSize;
public BaseMessage(int id,Long timeout) {
this.id = id;
this.SECONDS_TO_WAIT = timeout;
// this.threadPoolSize = threadPoolSize;
}
public int getId() {
return id;
}
public void setId(int id) {
this.id = id;
}
public long getSECONDS_TO_WAIT() {
return SECONDS_TO_WAIT;
}
public void setSECONDS_TO_WAIT(long SECONDS_TO_WAIT) {
this.SECONDS_TO_WAIT = SECONDS_TO_WAIT;
}
public int getThreadPoolSize() {
return threadPoolSize;
}
public void setThreadPoolSize(int threadPoolSize) {
this.threadPoolSize = threadPoolSize;
}
}
src/main/java/edu/lu/uni/serval/fixminer/akka/compare/AkkaTreeParser.java
+106
View File
@@ -0,0 +1,106 @@
package edu.lu.uni.serval.fixminer.akka.compare;
import akka.actor.ActorRef;
import akka.actor.ActorSystem;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import redis.clients.jedis.Jedis;
import redis.clients.jedis.JedisPool;
import redis.clients.jedis.ScanParams;
import redis.clients.jedis.ScanResult;
import java.util.List;
/**
* Created by anilkoyuncu on 12/09/2018.
*/
public class AkkaTreeParser {
private static Logger log = LoggerFactory.getLogger(AkkaTreeParser.class);
public static void akkaCompare(JedisPool innerPool, JedisPool outerPool, String numOfWorkers, int cursor, String eDiffTimeout, String parallelism){
final List<String> listOfPairs = getMessages(innerPool,cursor); //"/Users/anilkoyuncu/bugStudy/code/python/GumTreeInput/Apache/CAMEL/"
switch (parallelism){
case "AKKA":
ActorSystem system = null;
ActorRef parsingActor = null;
final TreeMessage msg = new TreeMessage(0,listOfPairs, innerPool,outerPool,eDiffTimeout);
try {
log.info("Akka begins...");
system = ActorSystem.create("Compare-EnhancedDiff-System");
parsingActor = system.actorOf(TreeActor.props(Integer.valueOf(numOfWorkers)), "mine-fix-pattern-actor");
parsingActor.tell(msg, ActorRef.noSender());
} catch (Exception e) {
system.shutdown();
e.printStackTrace();
}
break;
case "FORKJOIN":
int counter = new Object() {
int counter = 0;
{
listOfPairs.stream().
parallel().
peek(x -> counter++).
forEach(m ->
{
Compare compare = new Compare();
compare.coreCompare(m, innerPool, outerPool);
if (counter % 10 == 0) {
log.info("Finalized parsing " + counter + " files... remaing " + (listOfPairs.size() - counter));
}
}
);
}
}.counter;
log.info("Finished parsing {} files",counter);
break;
default:
log.error("Unknown parallelism {}", parallelism);
break;
}
}
public static List<String> getMessages(JedisPool innerPool, int cursor){
ScanResult<String> scan;
try (Jedis inner = innerPool.getResource()) {
while (!inner.ping().equals("PONG")){
log.info("wait");
}
ScanParams sc = new ScanParams();
//150000000
log.info("Scanning ");
sc.count(cursor);
sc.match("*");
// sc.match("pair_[0-9]*");
scan = inner.scan("0", sc);
int size = scan.getResult().size();
log.info("Scanned " + String.valueOf(size));
}
List<String> result = scan.getResult();
log.info("Getting results");
return result;
}
}
src/main/java/edu/lu/uni/serval/fixminer/cluster/Compare.java → src/main/java/edu/lu/uni/serval/fixminer/akka/compare/Compare.java
+9 -12
View File
@@ -1,11 +1,11 @@
package edu.lu.uni.serval.fixminer.cluster;
package edu.lu.uni.serval.fixminer.akka.compare;
import com.github.gumtreediff.actions.ActionGenerator;
import com.github.gumtreediff.actions.model.Action;
import com.github.gumtreediff.matchers.Matcher;
import com.github.gumtreediff.matchers.Matchers;
import com.github.gumtreediff.tree.ITree;
import edu.lu.uni.serval.FixPattern.utils.EDiff;
import edu.lu.uni.serval.utils.EDiffHelper;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import redis.clients.jedis.Jedis;
@@ -32,21 +32,18 @@ public class Compare {
try {
jedis = innerPool.getResource();
// resultMap = jedis.hgetAll(name);
String[] split = name.split("_");
String i = split[1];
String j = split[2];
String keyName = split[0];
// String firstValue = resultMap.get("0");
// String secondValue = resultMap.get("1");
oldTree = EDiffHelper.getSimpliedTree(keyName,i,outerPool);
oldTree = EDiff.getSimpliedTree(i,outerPool);
newTree = EDiff.getSimpliedTree(j,outerPool);
newTree = EDiffHelper.getSimpliedTree(keyName,j,outerPool);
Matcher m = Matchers.getInstance().getMatcher(oldTree, newTree);
m.match();
@@ -70,8 +67,8 @@ public class Compare {
if (((Double) chawatheSimilarity1).equals(1.0) || ((Double) diceSimilarity1).equals(1.0)
|| ((Double) jaccardSimilarity1).equals(1.0) || actions.size() == 0) {
String matchKey = "match_" + (String.valueOf(i)) + "_" + String.valueOf(j);
// log.info(matchKey);
String matchKey = keyName+"_" + (String.valueOf(i)) + "_" + String.valueOf(j);
log.info("{} tagged to be similar" ,matchKey);
jedis.select(1);
jedis.set(matchKey, result);
@@ -80,13 +77,13 @@ public class Compare {
jedis.select(0);
jedis.del("pair_" + (String.valueOf(i)) + "_" + String.valueOf(j));
jedis.del(keyName+"_" + (String.valueOf(i)) + "_" + String.valueOf(j));
} catch (Exception e) {
log.error(e.toString() + " {}", name);
log.debug("{} not comparable", name);
// e.printStackTrace();
src/main/java/edu/lu/uni/serval/fixminer/akka/compare/CompareTrees.java
+197
View File
@@ -0,0 +1,197 @@
package edu.lu.uni.serval.fixminer.akka.compare;
import com.github.gumtreediff.actions.ActionGenerator;
import com.github.gumtreediff.actions.model.Action;
import com.github.gumtreediff.matchers.Matcher;
import com.github.gumtreediff.matchers.Matchers;
import com.github.gumtreediff.tree.ITree;
import edu.lu.uni.serval.utils.EDiffHelper;
import edu.lu.uni.serval.utils.PoolBuilder;
import org.apache.commons.text.similarity.JaroWinklerDistance;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import redis.clients.jedis.Jedis;
import redis.clients.jedis.JedisPool;
import java.io.IOException;
import java.util.ArrayList;
import java.util.List;
import java.util.Map;
import static edu.lu.uni.serval.fixminer.jobs.MultiThreadTreeLoaderCluster3.getNames;
/**
* Created by anilkoyuncu on 03/04/2018.
*/
public class CompareTrees {
private static Logger log = LoggerFactory.getLogger(CompareTrees.class);
public static void main(String[] args) throws IOException {
String portInner = "6380";
String port = "6399";
//
JedisPool innerPool = new JedisPool(PoolBuilder.getPoolConfig(), "127.0.0.1",Integer.valueOf(portInner),20000000);
JedisPool outerPool = new JedisPool(PoolBuilder.getPoolConfig(), "127.0.0.1",Integer.valueOf(port),20000000);
List<String> listOfPairs = AkkaTreeParser.getMessages(innerPool,100000000);
// listOfPairs.stream().parallel().
int counter = new Object() {
int counter = 0;
{
listOfPairs.parallelStream().
peek(x -> counter++).
forEach(m ->
{
// Compare compare = new Compare();
coreCompare(m, args[0],innerPool, outerPool);
if (counter % 1000 == 0) {
log.info("Finalized parsing " + counter + " files... remaing " + (listOfPairs.size() - counter));
}
}
);
}
}.counter;
// coreCompare(args[0],args[1],args[2],args[3]);
}
public static void coreCompare(String pairName, String treeType,JedisPool innerPool,JedisPool outerPool ) {
// String portInner = "6380";
// String port = "6399";
// JedisPool innerPool = new JedisPool(PoolBuilder.getPoolConfig(), "127.0.0.1",Integer.valueOf(portInner),20000000);
//
// JedisPool outerPool = new JedisPool(PoolBuilder.getPoolConfig(), "127.0.0.1",Integer.valueOf(port),20000000);
Map<String, String> resultMap;
Jedis jedis = null;
ITree oldTree = null;
ITree newTree = null;
try {
jedis = innerPool.getResource();
String[] split = pairName.split("_");
String i = split[1];
String j = split[2];
String keyName = split[0];
switch (treeType) {
case "shape":
oldTree = EDiffHelper.getShapes(keyName, i, outerPool);
newTree = EDiffHelper.getShapes(keyName, j, outerPool);
break;
case "action":
oldTree = EDiffHelper.getActions(keyName, i, outerPool,innerPool);
newTree = EDiffHelper.getActions(keyName, j, outerPool,innerPool);
break;
case "token":
oldTree = EDiffHelper.getTokens(keyName, i, outerPool,innerPool);
newTree = EDiffHelper.getTokens(keyName, j, outerPool,innerPool);
List<String> oldTokens = new ArrayList<>();
List<String> newTokens = new ArrayList<>();
oldTokens = getNames(oldTree,oldTokens);
newTokens = getNames(newTree,newTokens);
CharSequence[] oldSequences = oldTokens.toArray(new CharSequence[oldTokens.size()]);
CharSequence[] newSequences = newTokens.toArray(new CharSequence[newTokens.size()]);
JaroWinklerDistance jwd = new JaroWinklerDistance();
Double overallSimi = Double.valueOf(0);
if(oldSequences.length > 0 && (oldSequences.length == newSequences.length)){
for (int idx = 0; idx < newSequences.length; idx++) {
Double simi = jwd.apply(newSequences[idx], oldSequences[idx]);
overallSimi = simi + overallSimi;
}
overallSimi = overallSimi / oldSequences.length;
}else{
overallSimi = Double.valueOf(0);
// if(oldSequences.length != 0) {
// log.info("ERROR");
// }
}
int retval = Double.compare(overallSimi, Double.valueOf(0.8));
String matchKey = keyName+"_" + (String.valueOf(i)) + "_" + String.valueOf(j);
if(retval >= 0){
String result = i + "," + j + ","+String.join(",", oldTokens);
jedis.select(2);
jedis.set(matchKey, result);
}
jedis.select(0);
jedis.del(matchKey);
return;
default:
break;
}
Matcher m = Matchers.getInstance().getMatcher(oldTree, newTree);
m.match();
ActionGenerator ag = new ActionGenerator(oldTree, newTree, m.getMappings());
ag.generate();
List<Action> actions = ag.getActions();
double chawatheSimilarity1 = m.chawatheSimilarity(oldTree, newTree);
String chawatheSimilarity = String.format("%1.2f", chawatheSimilarity1);
double diceSimilarity1 = m.diceSimilarity(oldTree, newTree);
String diceSimilarity = String.format("%1.2f", diceSimilarity1);
double jaccardSimilarity1 = m.jaccardSimilarity(oldTree, newTree);
String jaccardSimilarity = String.format("%1.2f", jaccardSimilarity1);
String editDistance = String.valueOf(actions.size());
String result = i + "," + j + "," + chawatheSimilarity + "," + diceSimilarity + "," + jaccardSimilarity + "," + editDistance;
String matchKey = keyName+"_" + (String.valueOf(i)) + "_" + String.valueOf(j);
if (((Double) chawatheSimilarity1).equals(1.0) || ((Double) diceSimilarity1).equals(1.0)
|| ((Double) jaccardSimilarity1).equals(1.0) || actions.size() == 0) {
// log.info("{} tagged to be similar" ,matchKey);
jedis.select(2);
jedis.set(matchKey, result);
}
jedis.select(0);
jedis.del(matchKey);
} catch (Exception e) {
log.debug("{} not comparable", pairName);
// e.printStackTrace();
}finally {
if (jedis != null) {
jedis.close();
}
}
}
}
src/main/java/edu/lu/uni/serval/fixminer/cluster/RunnableCompare.java → src/main/java/edu/lu/uni/serval/fixminer/akka/compare/RunnableCompare.java
+1 -1
View File
@@ -1,4 +1,4 @@
package edu.lu.uni.serval.fixminer.cluster;
package edu.lu.uni.serval.fixminer.akka.compare;
import redis.clients.jedis.JedisPool;
src/main/java/edu/lu/uni/serval/fixminer/cluster/TreeActor.java → src/main/java/edu/lu/uni/serval/fixminer/akka/compare/TreeActor.java
+5 -6
View File
@@ -1,11 +1,10 @@
package edu.lu.uni.serval.fixminer.cluster;
package edu.lu.uni.serval.fixminer.akka.compare;
import akka.actor.ActorRef;
import akka.actor.Props;
import akka.actor.UntypedActor;
import akka.japi.Creator;
import akka.routing.RoundRobinPool;
import edu.lu.uni.serval.fixminer.cluster.akka.TreeMessage;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import redis.clients.jedis.JedisPool;
@@ -61,15 +60,15 @@ public class TreeActor extends UntypedActor {
int toIndex = (i + 1) * average + counter;
List<String> pairsOfWorkers = pairs.subList(fromIndex, toIndex);
final TreeMessage workMsg = new TreeMessage(i + 1, pairsOfWorkers,innerPool,outerPool);
final TreeMessage workMsg = new TreeMessage(i + 1, pairsOfWorkers,innerPool,outerPool,((TreeMessage) message).getSECONDS_TO_WAIT());
mineRouter.tell(workMsg, getSelf());
logger.info("Assign a task to worker #" + (i + 1) + "...");
logger.info("Assign {} task to worker #" + (i + 1) + "...",pairsOfWorkers.size());
}
} else if ("STOP".equals(message.toString())) {
counter ++;
logger.info(counter + " workers finailized their work...");
logger.info(counter + " workers finalized their work...");
if (counter >= numberOfWorkers) {
logger.info("All workers finailized their work...");
logger.info("All workers finalized their work...");
this.getContext().stop(mineRouter);
this.getContext().stop(getSelf());
this.getContext().system().shutdown();
src/main/java/edu/lu/uni/serval/fixminer/cluster/akka/TreeMessage.java → src/main/java/edu/lu/uni/serval/fixminer/akka/compare/TreeMessage.java
+13 -10
View File
@@ -1,5 +1,6 @@
package edu.lu.uni.serval.fixminer.cluster.akka;
package edu.lu.uni.serval.fixminer.akka.compare;
import edu.lu.uni.serval.fixminer.akka.BaseMessage;
import redis.clients.jedis.JedisPool;
import java.util.List;
@@ -7,25 +8,27 @@ import java.util.List;
/**
* Created by anilkoyuncu on 12/09/2018.
*/
public class TreeMessage {
private int id;
public class TreeMessage extends BaseMessage{
private List<String> name;
private JedisPool innerPool;
private JedisPool outerPool;
public TreeMessage(int id, List<String> name, JedisPool innerPool, JedisPool outerPool) {
this.id = id;
public TreeMessage(int id, List<String> name, JedisPool innerPool, JedisPool outerPool,String eDiffTimeout) {
super(id,new Long(eDiffTimeout));
this.name = name;
this.innerPool = innerPool;
this.outerPool = outerPool;
}
public int getId() {
return id;
}
public TreeMessage(int id, List<String> name, JedisPool innerPool, JedisPool outerPool,Long eDiffTimeout) {
super(id,eDiffTimeout);
this.name = name;
this.innerPool = innerPool;
this.outerPool = outerPool;
public void setId(int id) {
this.id = id;
}
public List<String> getName() {

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