rc 3

src/main/java/edu/lu/uni/serval/FixPatternParser/CUCreator.java

@@ -1,55 +0,0 @@
-package edu.lu.uni.serval.FixPatternParser;
-
-import org.eclipse.jdt.core.dom.AST;
-import org.eclipse.jdt.core.dom.ASTParser;
-import org.eclipse.jdt.core.dom.CompilationUnit;
-
-import java.io.*;
-
-/**
- * Creator of a CompilationUnit.
- * 
- * @author kui.liu
- *
- */
-public class CUCreator {
-	
-	public CompilationUnit createCompilationUnit(File javaFile) {
-		CompilationUnit unit = null;
-		try {
-			char[] sourceCode = readFileToCharArray(new FileReader(javaFile));
-			ASTParser parser = createASTParser(sourceCode);
-			parser.setKind(ASTParser.K_COMPILATION_UNIT);
-			unit = (CompilationUnit) parser.createAST(null);
-		} catch (FileNotFoundException e) {
-			e.printStackTrace();
-		} catch (IOException e) {
-			e.printStackTrace();
-		}
-		
-		return unit;
-	}
-
-	private ASTParser createASTParser(char[] javaCode) {
-		ASTParser parser = ASTParser.newParser(AST.JLS8);
-		parser.setSource(javaCode);
-
-		return parser;
-	}
-	
-	private char[] readFileToCharArray(FileReader fileReader) throws IOException {
-		StringBuilder fileData = new StringBuilder();
-		BufferedReader br = new BufferedReader(fileReader);
-
-		char[] buf = new char[10];
-		int numRead = 0;
-		while ((numRead = br.read(buf)) != -1) {
-			String readData = String.valueOf(buf, 0, numRead);
-			fileData.append(readData);
-			buf = new char[1024];
-		}
-		br.close();
-
-		return fileData.toString().toCharArray();
-	}
-}

src/main/java/edu/lu/uni/serval/FixPatternParser/FixedPatternHunkParser.java

@@ -1,6 +1,4 @@
-package edu.lu.uni.serval.FixPatternParser.violations;
-
-import edu.lu.uni.serval.gumtree.regroup.HierarchicalActionSet;
+package edu.lu.uni.serval.FixPatternParser;
 
 import java.io.*;
 import java.util.List;
@@ -13,7 +11,7 @@ import java.util.List;
  * @author kui.liu
  *
  */
-public class FixedViolationHunkParser extends FixedViolationParser {
+public class FixedPatternHunkParser extends FixedPatternParser {
 	
 	public String testingInfo = "";
 	

src/main/java/edu/lu/uni/serval/FixPatternParser/FixedPatternParser.java

@@ -1,10 +1,7 @@
-package edu.lu.uni.serval.FixPatternParser.violations;
+package edu.lu.uni.serval.FixPatternParser;
 
 import com.github.gumtreediff.actions.model.Action;
-import edu.lu.uni.serval.FixPatternParser.Parser;
 import edu.lu.uni.serval.gumtree.GumTreeComparer;
-import edu.lu.uni.serval.gumtree.regroup.HierarchicalActionSet;
-import edu.lu.uni.serval.gumtree.regroup.HierarchicalRegrouper;
 import edu.lu.uni.serval.utils.ListSorter;
 
 import java.io.File;
@@ -17,7 +14,7 @@ import java.util.List;
  * @author kui.liu
  *
  */
-public class FixedViolationParser extends Parser {
+public class FixedPatternParser extends Parser {
 
 	/*
 	 * ResultType:

src/main/java/edu/lu/uni/serval/FixPatternParser/HierarchicalActionSet.java

@@ -1,4 +1,4 @@
-package edu.lu.uni.serval.gumtree.regroup;
+package edu.lu.uni.serval.FixPatternParser;
 
 import com.github.gumtreediff.actions.model.Action;
 import com.github.gumtreediff.tree.ITree;

src/main/java/edu/lu/uni/serval/FixPatternParser/HierarchicalRegrouper.java

@@ -1,8 +1,8 @@
-package edu.lu.uni.serval.gumtree.regroup;
+package edu.lu.uni.serval.FixPatternParser;
 
 import com.github.gumtreediff.actions.model.*;
 import com.github.gumtreediff.tree.ITree;
-import edu.lu.uni.serval.FixPattern.utils.ASTNodeMap;
+import edu.lu.uni.serval.utils.ASTNodeMap;
 import edu.lu.uni.serval.utils.ListSorter;
 
 import java.util.ArrayList;

src/main/java/edu/lu/uni/serval/fixminer/Launcher.java

@@ -1,6 +1,7 @@
 package edu.lu.uni.serval.fixminer;
 
-import edu.lu.uni.serval.fixminer.cluster.*;
+import edu.lu.uni.serval.fixminer.jobs.*;
+import edu.lu.uni.serval.utils.CallShell;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 

src/main/java/edu/lu/uni/serval/fixminer/MultiThreadTreeLoader.java

@@ -1,4 +1,4 @@
-package edu.lu.uni.serval.fixminer.cluster;
+package edu.lu.uni.serval.fixminer;
 
 import com.github.gumtreediff.actions.ActionGenerator;
 import com.github.gumtreediff.actions.model.Action;
@@ -6,8 +6,8 @@ import com.github.gumtreediff.matchers.Matcher;
 import com.github.gumtreediff.matchers.Matchers;
 import com.github.gumtreediff.tree.ITree;
 import com.github.gumtreediff.tree.Tree;
-import edu.lu.uni.serval.FixPattern.utils.ASTNodeMap;
-import edu.lu.uni.serval.gumtree.regroup.HierarchicalActionSet;
+import edu.lu.uni.serval.utils.ASTNodeMap;
+import edu.lu.uni.serval.FixPatternParser.HierarchicalActionSet;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 import redis.clients.jedis.*;

src/main/java/edu/lu/uni/serval/fixminer/TestHunkParserSingleFile.java

@@ -2,9 +2,9 @@ package edu.lu.uni.serval.fixminer;
 
 import akka.actor.ActorRef;
 import akka.actor.ActorSystem;
-import edu.lu.uni.serval.MultipleThreadsParser.MessageFile;
-import edu.lu.uni.serval.MultipleThreadsParser.ParseFixPatternActor;
-import edu.lu.uni.serval.MultipleThreadsParser.WorkMessage;
+import edu.lu.uni.serval.fixminer.cluster.akka.MessageFile;
+import edu.lu.uni.serval.fixminer.cluster.akka.EDiffActor;
+import edu.lu.uni.serval.fixminer.cluster.akka.EDiffMessage;
 import edu.lu.uni.serval.utils.FileHelper;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
@@ -96,11 +96,11 @@ public class TestHunkParserSingleFile {
 
 			ActorSystem system = null;
 			ActorRef parsingActor = null;
-			final WorkMessage msg = new WorkMessage(0, msgFiles);
+			final EDiffMessage msg = new EDiffMessage(0, msgFiles);
 			try {
 				log.info("Akka begins...");
 				system = ActorSystem.create("Mining-FixPattern-System");
-				parsingActor = system.actorOf(ParseFixPatternActor.props(1, "dataset"), "mine-fix-pattern-actor");
+				parsingActor = system.actorOf(EDiffActor.props(1, "dataset"), "mine-fix-pattern-actor");
 				parsingActor.tell(msg, ActorRef.noSender());
 			} catch (Exception e) {
 				system.shutdown();
@@ -109,7 +109,7 @@ public class TestHunkParserSingleFile {
 
 //		int counter = 0;
 //            for (MessageFile msgFile : msgFiles) {
-//                FixedViolationHunkParser parser = new FixedViolationHunkParser();
+//                FixedPatternHunkParser parser = new FixedPatternHunkParser();
 //
 //                final ExecutorService executor = Executors.newSingleThreadExecutor();
 //                // schedule the work

src/main/java/edu/lu/uni/serval/fixminer/cluster/Compare.java

@@ -5,7 +5,7 @@ import com.github.gumtreediff.actions.model.Action;
 import com.github.gumtreediff.matchers.Matcher;
 import com.github.gumtreediff.matchers.Matchers;
 import com.github.gumtreediff.tree.ITree;
-import edu.lu.uni.serval.FixPattern.utils.EDiff;
+import edu.lu.uni.serval.utils.EDiff;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 import redis.clients.jedis.Jedis;

src/main/java/edu/lu/uni/serval/fixminer/cluster/WorkMessage.java

@@ -1,51 +0,0 @@
-package edu.lu.uni.serval.fixminer.cluster;
-
-import java.util.List;
-
-public class WorkMessage {
-
-	private int id;
-	private List<String> msgFiles;
-
-	public String getDbDir() {
-		return dbDir;
-	}
-
-	public String getServerWait() {
-		return serverWait;
-	}
-
-	private String dbDir;
-	private String serverWait;
-
-	public String getInputPath() {
-		return inputPath;
-	}
-
-	private String inputPath;
-
-	public String getInnerPort() {
-		return innerPort;
-	}
-
-	private String innerPort;
-
-	public WorkMessage(int id, List<String> msgFiles,String innerPort,String inputPath,String dbDir,String serverWait) {
-		super();
-		this.id = id;
-		this.msgFiles = msgFiles;
-		this.innerPort = innerPort;
-		this.inputPath = inputPath;
-		this.dbDir = dbDir;
-		this.serverWait = serverWait;
-	}
-
-	public int getId() {
-		return id;
-	}
-
-	public List<String> getMsgFiles() {
-		return msgFiles;
-	}
-	
-}

src/main/java/edu/lu/uni/serval/fixminer/cluster/akka/AkkaTreeParser.java

@@ -2,7 +2,6 @@ package edu.lu.uni.serval.fixminer.cluster.akka;
 
 import akka.actor.ActorRef;
 import akka.actor.ActorSystem;
-import edu.lu.uni.serval.fixminer.cluster.TreeActor;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 import redis.clients.jedis.Jedis;

src/main/java/edu/lu/uni/serval/fixminer/cluster/akka/EDiffActor.java

@@ -1,4 +1,4 @@
-package edu.lu.uni.serval.MultipleThreadsParser;
+package edu.lu.uni.serval.fixminer.cluster.akka;
 
 import akka.actor.ActorRef;
 import akka.actor.Props;
@@ -10,29 +10,29 @@ import org.slf4j.LoggerFactory;
 
 import java.util.List;
 
-public class ParseFixPatternActor extends UntypedActor {
+public class EDiffActor extends UntypedActor {
 	
-	private static Logger logger = LoggerFactory.getLogger(ParseFixPatternActor.class);
+	private static Logger logger = LoggerFactory.getLogger(EDiffActor.class);
 
 	private ActorRef mineRouter;
 	private final int numberOfWorkers;
 	private int counter = 0;
 	
-	public ParseFixPatternActor(int numberOfWorkers, String project) {
+	public EDiffActor(int numberOfWorkers, String project) {
 		mineRouter = this.getContext().actorOf(new RoundRobinPool(numberOfWorkers)
-				.props(ParseFixPatternWorker.props(project)), "mine-fix-pattern-router");
+				.props(EDiffWorker.props(project)), "mine-fix-pattern-router");
 		this.numberOfWorkers = numberOfWorkers;
 	}
 
 	public static Props props(final int numberOfWorkers, final String project) {
 		
-		return Props.create(new Creator<ParseFixPatternActor>() {
+		return Props.create(new Creator<EDiffActor>() {
 
 			private static final long serialVersionUID = 9207427376110704705L;
 
 			@Override
-			public ParseFixPatternActor create() throws Exception {
-				return new ParseFixPatternActor(numberOfWorkers, project);
+			public EDiffActor create() throws Exception {
+				return new EDiffActor(numberOfWorkers, project);
 			}
 			
 		});
@@ -41,8 +41,8 @@ public class ParseFixPatternActor extends UntypedActor {
 	@SuppressWarnings("deprecation")
 	@Override
 	public void onReceive(Object message) throws Exception {
-		if (message instanceof WorkMessage) {
-			List<MessageFile> files = ((WorkMessage) message).getMsgFiles();
+		if (message instanceof EDiffMessage) {
+			List<MessageFile> files = ((EDiffMessage) message).getMsgFiles();
 			int size = files.size();
 			int average = size / numberOfWorkers;
 			int reminder = size % numberOfWorkers;
@@ -54,7 +54,7 @@ public class ParseFixPatternActor extends UntypedActor {
 				int toIndex = (i + 1) * average + counter;
 				
 				List<MessageFile> filesOfWorkers = files.subList(fromIndex, toIndex);
-				final WorkMessage workMsg = new WorkMessage(i + 1, filesOfWorkers);
+				final EDiffMessage workMsg = new EDiffMessage(i + 1, filesOfWorkers);
 				mineRouter.tell(workMsg, getSelf());
 				logger.info("Assign a task to worker #" + (i + 1) + "...");
 			}

src/main/java/edu/lu/uni/serval/fixminer/cluster/akka/EDiffMessage.java

@@ -1,13 +1,13 @@
-package edu.lu.uni.serval.MultipleThreadsParser;
+package edu.lu.uni.serval.fixminer.cluster.akka;
 
 import java.util.List;
 
-public class WorkMessage {
+public class EDiffMessage {
 
 	private int id;
 	private List<MessageFile> msgFiles;
 	
-	public WorkMessage(int id, List<MessageFile> msgFiles) {
+	public EDiffMessage(int id, List<MessageFile> msgFiles) {
 		super();
 		this.id = id;
 		this.msgFiles = msgFiles;

src/main/java/edu/lu/uni/serval/fixminer/cluster/akka/EDiffWorker.java

@@ -1,10 +1,10 @@
-package edu.lu.uni.serval.MultipleThreadsParser;
+package edu.lu.uni.serval.fixminer.cluster.akka;
 
 import akka.actor.Props;
 import akka.actor.UntypedActor;
 import akka.japi.Creator;
+import edu.lu.uni.serval.FixPatternParser.FixedPatternHunkParser;
 import edu.lu.uni.serval.FixPatternParser.RunnableParser;
-import edu.lu.uni.serval.FixPatternParser.violations.FixedViolationHunkParser;
 import edu.lu.uni.serval.config.Configuration;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
@@ -13,24 +13,24 @@ import java.io.File;
 import java.util.List;
 import java.util.concurrent.*;
 
-public class ParseFixPatternWorker extends UntypedActor {
-	private static Logger log = LoggerFactory.getLogger(ParseFixPatternActor.class);
+public class EDiffWorker extends UntypedActor {
+	private static Logger log = LoggerFactory.getLogger(EDiffActor.class);
 	
 	private String project;
 
 	
-	public ParseFixPatternWorker(String project) {
+	public EDiffWorker(String project) {
 		this.project = project;
 	}
 
 	public static Props props(final String project) {
-		return Props.create(new Creator<ParseFixPatternWorker>() {
+		return Props.create(new Creator<EDiffWorker>() {
 
 			private static final long serialVersionUID = -7615153844097275009L;
 
 			@Override
-			public ParseFixPatternWorker create() throws Exception {
-				return new ParseFixPatternWorker(project);
+			public EDiffWorker create() throws Exception {
+				return new EDiffWorker(project);
 			}
 			
 		});
@@ -38,8 +38,8 @@ public class ParseFixPatternWorker extends UntypedActor {
 
 	@Override
 	public void onReceive(Object message) throws Exception {
-		if (message instanceof WorkMessage) {
-			WorkMessage msg = (WorkMessage) message;
+		if (message instanceof EDiffMessage) {
+			EDiffMessage msg = (EDiffMessage) message;
 			List<MessageFile> files = msg.getMsgFiles();
 			StringBuilder editScripts = new StringBuilder();
 			StringBuilder patchesSourceCode = new StringBuilder();
@@ -68,7 +68,7 @@ public class ParseFixPatternWorker extends UntypedActor {
 				File diffentryFile = msgFile.getDiffEntryFile();
 
 
-				FixedViolationHunkParser parser =  new FixedViolationHunkParser();
+				FixedPatternHunkParser parser =  new FixedPatternHunkParser();
 				
 				final ExecutorService executor = Executors.newSingleThreadExecutor();
 				// schedule the work

src/main/java/edu/lu/uni/serval/fixminer/cluster/akka/MessageFile.java

@@ -1,4 +1,4 @@
-package edu.lu.uni.serval.MultipleThreadsParser;
+package edu.lu.uni.serval.fixminer.cluster.akka;
 
 import java.io.File;
 

src/main/java/edu/lu/uni/serval/fixminer/cluster/akka/TreeActor.java

@@ -1,11 +1,10 @@
-package edu.lu.uni.serval.fixminer.cluster;
+package edu.lu.uni.serval.fixminer.cluster.akka;
 
 import akka.actor.ActorRef;
 import akka.actor.Props;
 import akka.actor.UntypedActor;
 import akka.japi.Creator;
 import akka.routing.RoundRobinPool;
-import edu.lu.uni.serval.fixminer.cluster.akka.TreeMessage;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 import redis.clients.jedis.JedisPool;

src/main/java/edu/lu/uni/serval/fixminer/cluster/akka/TreeWorker.java

@@ -1,10 +1,11 @@
-package edu.lu.uni.serval.fixminer.cluster;
+package edu.lu.uni.serval.fixminer.cluster.akka;
 
 import akka.actor.Props;
 import akka.actor.UntypedActor;
 import akka.japi.Creator;
 import edu.lu.uni.serval.config.Configuration;
-import edu.lu.uni.serval.fixminer.cluster.akka.TreeMessage;
+import edu.lu.uni.serval.fixminer.cluster.Compare;
+import edu.lu.uni.serval.fixminer.cluster.RunnableCompare;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 import redis.clients.jedis.JedisPool;
@@ -65,7 +66,7 @@ public class TreeWorker extends UntypedActor {
 		if(message instanceof TreeMessage) {
 
 
-//		if (message instanceof edu.lu.uni.serval.MultipleThreadsParser.WorkMessage) {
+//		if (message instanceof edu.lu.uni.serval.fixminer.cluster.akka.EDiffMessage) {
 			TreeMessage msg = (TreeMessage) message;
 			List<String> files = msg.getName();
 			JedisPool innerPool = msg.getInnerPool();

src/main/java/edu/lu/uni/serval/fixminer/jobs/AkkaTreeLoader.java

@@ -1,6 +1,7 @@
-package edu.lu.uni.serval.fixminer.cluster;
+package edu.lu.uni.serval.fixminer.jobs;
 
-import edu.lu.uni.serval.FixPattern.utils.PoolBuilder;
+import edu.lu.uni.serval.utils.CallShell;
+import edu.lu.uni.serval.utils.PoolBuilder;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 import redis.clients.jedis.Jedis;

src/main/java/edu/lu/uni/serval/fixminer/jobs/CalculatePairs.java

@@ -1,6 +1,7 @@
-package edu.lu.uni.serval.fixminer.cluster;
+package edu.lu.uni.serval.fixminer.jobs;
 
-import edu.lu.uni.serval.FixPattern.utils.PoolBuilder;
+import edu.lu.uni.serval.utils.CallShell;
+import edu.lu.uni.serval.utils.PoolBuilder;
 import edu.lu.uni.serval.utils.FileHelper;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;

src/main/java/edu/lu/uni/serval/fixminer/jobs/EnhancedASTDiff.java

@@ -1,10 +1,10 @@
-package edu.lu.uni.serval.fixminer;
+package edu.lu.uni.serval.fixminer.jobs;
 
 import akka.actor.ActorRef;
 import akka.actor.ActorSystem;
-import edu.lu.uni.serval.MultipleThreadsParser.MessageFile;
-import edu.lu.uni.serval.MultipleThreadsParser.ParseFixPatternActor;
-import edu.lu.uni.serval.MultipleThreadsParser.WorkMessage;
+import edu.lu.uni.serval.fixminer.cluster.akka.EDiffMessage;
+import edu.lu.uni.serval.fixminer.cluster.akka.MessageFile;
+import edu.lu.uni.serval.fixminer.cluster.akka.EDiffActor;
 import edu.lu.uni.serval.utils.FileHelper;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
@@ -56,12 +56,12 @@ public class EnhancedASTDiff {
 
 			ActorSystem system = null;
 			ActorRef parsingActor = null;
-			final WorkMessage msg = new WorkMessage(0, msgFiles);
+			final EDiffMessage msg = new EDiffMessage(0, msgFiles);
 			try {
 				log.info("Akka begins...");
 				system = ActorSystem.create("Mining-FixPattern-System");
 
-				parsingActor = system.actorOf(ParseFixPatternActor.props(Integer.valueOf(numOfWorkers), project), "mine-fix-pattern-actor");
+				parsingActor = system.actorOf(EDiffActor.props(Integer.valueOf(numOfWorkers), project), "mine-fix-pattern-actor");
 				parsingActor.tell(msg, ActorRef.noSender());
 			} catch (Exception e) {
 				system.shutdown();

src/main/java/edu/lu/uni/serval/fixminer/jobs/ImportPairs2DB.java

@@ -1,5 +1,6 @@
-package edu.lu.uni.serval.fixminer.cluster;
+package edu.lu.uni.serval.fixminer.jobs;
 
+import edu.lu.uni.serval.utils.CallShell;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 

src/main/java/edu/lu/uni/serval/fixminer/jobs/MultiThreadTreeLoaderCluster.java

@@ -1,4 +1,4 @@
-package edu.lu.uni.serval.fixminer.cluster;
+package edu.lu.uni.serval.fixminer.jobs;
 
 import com.github.gumtreediff.actions.ActionGenerator;
 import com.github.gumtreediff.actions.model.Action;
@@ -6,10 +6,11 @@ import com.github.gumtreediff.matchers.Matcher;
 import com.github.gumtreediff.matchers.Matchers;
 import com.github.gumtreediff.tree.ITree;
 import com.github.gumtreediff.tree.TreeContext;
-import edu.lu.uni.serval.FixPattern.utils.EDiff;
-import edu.lu.uni.serval.FixPattern.utils.EDiffHelper;
-import edu.lu.uni.serval.FixPattern.utils.PoolBuilder;
-import edu.lu.uni.serval.gumtree.regroup.HierarchicalActionSet;
+import edu.lu.uni.serval.utils.CallShell;
+import edu.lu.uni.serval.utils.EDiff;
+import edu.lu.uni.serval.utils.EDiffHelper;
+import edu.lu.uni.serval.utils.PoolBuilder;
+import edu.lu.uni.serval.FixPatternParser.HierarchicalActionSet;
 import edu.lu.uni.serval.utils.FileHelper;
 import org.javatuples.Pair;
 import org.slf4j.Logger;

src/main/java/edu/lu/uni/serval/fixminer/jobs/MultiThreadTreeLoaderCluster3.java

@@ -1,10 +1,11 @@
-package edu.lu.uni.serval.fixminer.cluster;
+package edu.lu.uni.serval.fixminer.jobs;
 
 import com.github.gumtreediff.tree.ITree;
 import com.github.gumtreediff.tree.TreeContext;
-import edu.lu.uni.serval.FixPattern.utils.EDiffHelper;
-import edu.lu.uni.serval.FixPattern.utils.PoolBuilder;
-import edu.lu.uni.serval.gumtree.regroup.HierarchicalActionSet;
+import edu.lu.uni.serval.utils.CallShell;
+import edu.lu.uni.serval.utils.EDiffHelper;
+import edu.lu.uni.serval.utils.PoolBuilder;
+import edu.lu.uni.serval.FixPatternParser.HierarchicalActionSet;
 import edu.lu.uni.serval.utils.FileHelper;
 import org.apache.commons.lang3.StringUtils;
 import org.apache.commons.text.similarity.JaroWinklerDistance;

src/main/java/edu/lu/uni/serval/fixminer/jobs/PatternExtractor.java

@@ -1,7 +1,7 @@
-package edu.lu.uni.serval.fixminer;
+package edu.lu.uni.serval.fixminer.jobs;
 
-import edu.lu.uni.serval.FixPattern.utils.Checker;
-import edu.lu.uni.serval.gumtree.regroup.HierarchicalActionSet;
+import edu.lu.uni.serval.utils.Checker;
+import edu.lu.uni.serval.FixPatternParser.HierarchicalActionSet;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 import redis.clients.jedis.Jedis;

src/main/java/edu/lu/uni/serval/fixminer/jobs/StoreEDiffInCache.java

@@ -1,8 +1,9 @@
-package edu.lu.uni.serval.fixminer.cluster;
+package edu.lu.uni.serval.fixminer.jobs;
 
-import edu.lu.uni.serval.FixPattern.utils.EDiffHelper;
-import edu.lu.uni.serval.FixPattern.utils.PoolBuilder;
-import edu.lu.uni.serval.gumtree.regroup.HierarchicalActionSet;
+import edu.lu.uni.serval.utils.CallShell;
+import edu.lu.uni.serval.utils.EDiffHelper;
+import edu.lu.uni.serval.utils.PoolBuilder;
+import edu.lu.uni.serval.FixPatternParser.HierarchicalActionSet;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 import redis.clients.jedis.Jedis;

src/main/java/edu/lu/uni/serval/fixminer/jobs/TreeLoaderClusterL1.java

@@ -1,6 +1,7 @@
-package edu.lu.uni.serval.fixminer.cluster;
+package edu.lu.uni.serval.fixminer.jobs;
 
-import edu.lu.uni.serval.FixPattern.utils.PoolBuilder;
+import edu.lu.uni.serval.utils.CallShell;
+import edu.lu.uni.serval.utils.PoolBuilder;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 import redis.clients.jedis.Jedis;

src/main/java/edu/lu/uni/serval/utils/ASTNodeMap.java

@@ -1,4 +1,4 @@
-package edu.lu.uni.serval.FixPattern.utils;
+package edu.lu.uni.serval.utils;
 
 import java.util.HashMap;
 import java.util.Map;

src/main/java/edu/lu/uni/serval/utils/CallShell.java

@@ -1,4 +1,4 @@
-package edu.lu.uni.serval.fixminer.cluster;
+package edu.lu.uni.serval.utils;
 
 /**
  * Created by anilkoyuncu on 17/04/2018.

src/main/java/edu/lu/uni/serval/utils/Checker.java

@@ -1,4 +1,4 @@
-package edu.lu.uni.serval.FixPattern.utils;
+package edu.lu.uni.serval.utils;
 
 public class Checker {
 	

src/main/java/edu/lu/uni/serval/utils/EDiff.java

@@ -1,9 +1,9 @@
-package edu.lu.uni.serval.FixPattern.utils;
+package edu.lu.uni.serval.utils;
 
 import com.github.gumtreediff.actions.model.*;
 import com.github.gumtreediff.tree.ITree;
 import com.github.gumtreediff.tree.TreeContext;
-import edu.lu.uni.serval.gumtree.regroup.HierarchicalActionSet;
+import edu.lu.uni.serval.FixPatternParser.HierarchicalActionSet;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 import redis.clients.jedis.Jedis;

src/main/java/edu/lu/uni/serval/utils/EDiffHelper.java

@@ -1,8 +1,8 @@
-package edu.lu.uni.serval.FixPattern.utils;
+package edu.lu.uni.serval.utils;
 
 import com.github.gumtreediff.tree.ITree;
 import com.github.gumtreediff.tree.TreeContext;
-import edu.lu.uni.serval.gumtree.regroup.HierarchicalActionSet;
+import edu.lu.uni.serval.FixPatternParser.HierarchicalActionSet;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 

src/main/java/edu/lu/uni/serval/utils/PoolBuilder.java

@@ -1,4 +1,4 @@
-package edu.lu.uni.serval.FixPattern.utils;
+package edu.lu.uni.serval.utils;
 
 import redis.clients.jedis.JedisPoolConfig;