diff --git a/gradle/verification-metadata.xml b/gradle/verification-metadata.xml
index ec31bb762dd..5e93d947a37 100644
--- a/gradle/verification-metadata.xml
+++ b/gradle/verification-metadata.xml
@@ -2171,6 +2171,12 @@
             <sha256 value="b19204331ac6e204befaf508a68f52ec6b4638d9d9bacddbebd435f9c4d500f2" origin="Generated by Gradle"/>
          </artifact>
       </component>
+      <component group="com.googlecode.javaewah" name="JavaEWAH" version="1.1.13">
+         <artifact name="JavaEWAH-1.1.13.jar">
+            <md5 value="a1eb305e5cc5bba238d4360e3139abb4" origin="Generated by Gradle"/>
+            <sha256 value="4c0fda2b1d317750d7ea324e36c70b2bc48310c0aaae67b98df0915d696d7111" origin="Generated by Gradle"/>
+         </artifact>
+      </component>
       <component group="com.googlecode.json-simple" name="json-simple" version="1.1">
          <artifact name="json-simple-1.1.jar">
             <md5 value="eb342044fc56be9ba49fbfc9789f1bb5" origin="Generated by Gradle"/>
@@ -6416,6 +6422,12 @@
             <sha256 value="dabf8369f0cdf8cf17b7f7da4bda9320c570bb754c88e0beb7b852812cf5cd25" origin="Generated by Gradle"/>
          </artifact>
       </component>
+      <component group="org.eclipse.jgit" name="org.eclipse.jgit" version="6.4.0.202211300538-r">
+         <artifact name="org.eclipse.jgit-6.4.0.202211300538-r.jar">
+            <md5 value="2750720ae43f9cb254e6349080bf9d70" origin="Generated by Gradle"/>
+            <sha256 value="c1487989eadb53bd58a47b72fb069636397bb8dfedf21387a40a86c3e7b2faac" origin="Generated by Gradle"/>
+         </artifact>
+      </component>
       <component group="org.eclipse.sisu" name="org.eclipse.sisu.inject" version="0.3.5">
          <artifact name="org.eclipse.sisu.inject-0.3.5.jar">
             <md5 value="1b296b0ddd911ed3750b3df93b395cd5" origin="Generated by Gradle"/>
diff --git a/libraries/tools/gradle/regression-benchmark-templates/build.gradle.kts b/libraries/tools/gradle/regression-benchmark-templates/build.gradle.kts
index 2c81f82f9aa..8f4921f2b75 100644
--- a/libraries/tools/gradle/regression-benchmark-templates/build.gradle.kts
+++ b/libraries/tools/gradle/regression-benchmark-templates/build.gradle.kts
@@ -5,7 +5,7 @@ plugins {
 dependencies {
     implementation("org.jetbrains.kotlin:kotlin-scripting-common")
     implementation("com.squareup.okhttp3:okhttp:4.9.0")
-    implementation("org.eclipse.jgit:org.eclipse.jgit:5.13.0.202109080827-r")
+    implementation("org.eclipse.jgit:org.eclipse.jgit:6.4.0.202211300538-r")
     implementation("org.slf4j:slf4j-nop:1.7.32")
     implementation("org.jetbrains.kotlinx:dataframe:0.8.1")
 }
diff --git a/libraries/tools/gradle/regression-benchmark-templates/src/main/kotlin/org/jetbrains/kotlin/gradle/benchmark/BenchmarkTemplate.kt b/libraries/tools/gradle/regression-benchmark-templates/src/main/kotlin/org/jetbrains/kotlin/gradle/benchmark/BenchmarkTemplate.kt
index bf501414dee..280819b1dd6 100644
--- a/libraries/tools/gradle/regression-benchmark-templates/src/main/kotlin/org/jetbrains/kotlin/gradle/benchmark/BenchmarkTemplate.kt
+++ b/libraries/tools/gradle/regression-benchmark-templates/src/main/kotlin/org/jetbrains/kotlin/gradle/benchmark/BenchmarkTemplate.kt
@@ -123,19 +123,25 @@ abstract class BenchmarkTemplate(
         patch: InputStream
     ) {
         println("Applying patch $patchName to repository")
-        Git.open(projectRepoDir)
-            .apply()
+        val git = Git.open(projectRepoDir)
+        git.apply()
             .setPatch(patch)
             .call()
+        git.close()
     }
 
     fun repoReset() {
         println("Hard resetting project repo")
-        Git.open(projectRepoDir)
-            .reset()
+        val git = Git.open(projectRepoDir)
+        git.reset()
             .setMode(ResetCommand.ResetType.HARD)
             .setProgressMonitor(gitOperationsPrinter)
             .call()
+        git.clean()
+            .setCleanDirectories(true)
+            .setForce(true)
+            .call()
+        git.close()
     }
 
     private fun runBenchmark(