KT-43205 Ignore annotations in CallableClsStubBuilder when needed

Kotlin compiler can add `@Deprecated` annotations to the fields of
private companion objects, and if those annotations are not supposed to
be shown in decompiled code and used, the field is marked with
`HAS_ANNOTATIONS=false` flag (see KT-25009)

However, it was not taken into account in stubs building process, which
led to the 'Stubs vs PSI mismatch' exceptions

^KT-43205 Fixed

Also, restore the order of nested typealiases and classes (see KT-41859)

We didn't want to bump the version of the stubs when we fixed this
issue; now we have an opportunity to restore the order back to
match the `MemberComparator`

Also, some refactoring is done to underscore that
`createPackageDeclarationsStubs` is suitable only for packages, not
for any declarations container

compiler/psi/src/org/jetbrains/kotlin/psi/stubs/KotlinStubVersions.kt

@@ -28,8 +28,7 @@ object KotlinStubVersions {
     // Binary stub version should be increased if stub format (org.jetbrains.kotlin.psi.stubs.impl) is changed
     //      or changes are made to the core stub building code (org.jetbrains.kotlin.idea.decompiler.stubBuilder).
     // Increasing this version will lead to reindexing of all binary files that are potentially kotlin binaries (including all class files).
-    // TODO: Before updating this, please see the kdoc at DeserializedMemberScope.computeDescriptors and KT-41859
-    private const val BINARY_STUB_VERSION = 72
+    private const val BINARY_STUB_VERSION = 73
 
     // Classfile stub version should be increased if changes are made to classfile stub building subsystem (org.jetbrains.kotlin.idea.decompiler.classFile)
     // Increasing this version will lead to reindexing of all classfiles.