diff --git a/kotlin-native/Interop/StubGenerator/src/main/kotlin/org/jetbrains/kotlin/native/interop/gen/defFileDependencies.kt b/kotlin-native/Interop/StubGenerator/src/main/kotlin/org/jetbrains/kotlin/native/interop/gen/defFileDependencies.kt
index 8fe749e2f8b..7b32bcc38e4 100644
--- a/kotlin-native/Interop/StubGenerator/src/main/kotlin/org/jetbrains/kotlin/native/interop/gen/defFileDependencies.kt
+++ b/kotlin-native/Interop/StubGenerator/src/main/kotlin/org/jetbrains/kotlin/native/interop/gen/defFileDependencies.kt
@@ -1,6 +1,8 @@
 package org.jetbrains.kotlin.native.interop.gen
 
+import kotlinx.cinterop.usingJvmCInteropCallbacks
 import org.jetbrains.kotlin.konan.util.DefFile
+import org.jetbrains.kotlin.konan.util.usingNativeMemoryAllocator
 import org.jetbrains.kotlin.native.interop.gen.jvm.KotlinPlatform
 import org.jetbrains.kotlin.native.interop.gen.jvm.buildNativeLibrary
 import org.jetbrains.kotlin.native.interop.gen.jvm.prepareTool
@@ -31,8 +33,11 @@ fun defFileDependencies(args: Array<String>, runFromDaemon: Boolean) {
             }
         }
     }
-
-    defFileDependencies(makeDependencyAssigner(targets, defFiles, runFromDaemon))
+    usingNativeMemoryAllocator {
+        usingJvmCInteropCallbacks {
+            defFileDependencies(makeDependencyAssigner(targets, defFiles, runFromDaemon))
+        }
+    }
 }
 
 private fun makeDependencyAssigner(targets: List<String>, defFiles: List<File>, runFromDaemon: Boolean) =