diff --git a/plugins/jso/compiler-plugin/build.gradle.kts b/plugins/jso/compiler-plugin/build.gradle.kts
index 319aa0d6317..7448c679b50 100644
--- a/plugins/jso/compiler-plugin/build.gradle.kts
+++ b/plugins/jso/compiler-plugin/build.gradle.kts
@@ -39,15 +39,17 @@ dependencies {
     testImplementation(libs.junit.jupiter.api)
     testRuntimeOnly(libs.junit.jupiter.engine)
 
-    jsoIrRuntimeForTests(project(":plugins:jso:runtime")) { isTransitive = false }
+    if (!project.kotlinBuildProperties.isInJpsBuildIdeaSync) {
+        jsoIrRuntimeForTests(project(":plugins:jso:runtime")) { isTransitive = false }
 
-    embedded(project(":plugins:jso:runtime")) {
-        attributes {
-            attribute(KotlinPlatformType.attribute, KotlinPlatformType.js)
-            attribute(KotlinJsCompilerAttribute.jsCompilerAttribute, KotlinJsCompilerAttribute.ir)
-            attribute(Usage.USAGE_ATTRIBUTE, objects.named(KotlinUsages.KOTLIN_RUNTIME))
+        embedded(project(":plugins:jso:runtime")) {
+            attributes {
+                attribute(KotlinPlatformType.attribute, KotlinPlatformType.js)
+                attribute(KotlinJsCompilerAttribute.jsCompilerAttribute, KotlinJsCompilerAttribute.ir)
+                attribute(Usage.USAGE_ATTRIBUTE, objects.named(KotlinUsages.KOTLIN_RUNTIME))
+            }
+            isTransitive = false
         }
-        isTransitive = false
     }
 
     testRuntimeOnly(project(":core:descriptors.runtime"))
@@ -85,4 +87,4 @@ projectTest(parallel = true, jUnitMode = JUnitMode.JUnit5) {
     }
 }
 
-val generateTests by generator("org.jetbrains.kotlinx.jso.TestGeneratorKt")
\ No newline at end of file
+val generateTests by generator("org.jetbrains.kotlinx.jso.TestGeneratorKt")
diff --git a/settings.gradle b/settings.gradle
index 773c8b50990..b4a8de4145f 100644
--- a/settings.gradle
+++ b/settings.gradle
@@ -288,9 +288,12 @@ include ":plugins:jso:compiler-plugin",
         ":plugins:jso:compiler-plugin:jso.common",
         ":plugins:jso:compiler-plugin:jso.k2",
         ":plugins:jso:compiler-plugin:jso.backend",
-        ":plugins:jso:compiler-plugin:jso.cli",
-        ":plugins:jso:runtime",
-        ":libraries:tools:jso"
+        ":plugins:jso:compiler-plugin:jso.cli"
+
+if (!buildProperties.inJpsBuildIdeaSync) {
+    include ":plugins:jso:runtime",
+            ":libraries:tools:jso"
+}
 
 include ":compiler:fir",
         ":compiler:fir:cones",
@@ -875,4 +878,4 @@ if (buildProperties.isKotlinNativeEnabled) {
     include ':kotlin-native:libclangext'
     include ':kotlin-native:backend.native:tests'
     include ":kotlin-native:prepare:kotlin-native-compiler-embeddable"
-}
\ No newline at end of file
+}