Correctly processing disappeared protos, files with constants/inline function.

jps-plugin/testData/incremental/pureKotlin/fileWithInlineFunctionRemoved/usage.kt

@@ -0,0 +1,7 @@
+package usage
+
+fun main(args: Array<String>) {
+    inline.f {
+        println("to be inlined")
+    }
+}