CLI: improve behavior of -include-runtime

1.fix KT-17344: Include kotlin-reflect to resulting jar if "-include-runtime" is specified, unless the -no-reflect option is specified.
2.fix KT-43220: -include-runtime should add .kotlin_builtins to the output

compiler/testData/integration/smoke/reflect/reflect.compile.expected

@@ -0,0 +1 @@
+Return code: 0

compiler/testData/integration/smoke/reflect/reflect.kt

@@ -0,0 +1,5 @@
+package reflect
+
+fun main() {
+    String::class.annotations
+}

compiler/testData/integration/smoke/reflect/reflect.run.expected

@@ -0,0 +1 @@
+Return code: 0