CLI: improve behavior of -include-runtime

1.fix KT-17344: Include kotlin-reflect to resulting jar if "-include-runtime" is specified, unless the -no-reflect option is specified.
2.fix KT-43220: -include-runtime should add .kotlin_builtins to the output

compiler/testData/integration/smoke/noReflect/noReflect.kt

@@ -0,0 +1,9 @@
+package noReflect
+
+fun main() {
+    try {
+        String::class.annotations
+    } catch (e: KotlinReflectionNotSupportedError) {
+        println("KotlinReflectionNotSupportedError has been caught")
+    }
+}