CLI: improve behavior of -include-runtime

1.fix KT-17344: Include kotlin-reflect to resulting jar if "-include-runtime" is specified, unless the -no-reflect option is specified.
2.fix KT-43220: -include-runtime should add .kotlin_builtins to the output

compiler/testData/integration/smoke/noReflect/noReflect.compile.expected

@@ -0,0 +1,6 @@
+ERR:
+noReflect.kt:5:23: warning: call uses reflection API which is not found in compilation classpath. Make sure you have kotlin-reflect.jar in the classpath
+        String::class.annotations
+                      ^
+
+Return code: 0