diff --git a/idea/idea-gradle/tests/org/jetbrains/kotlin/idea/codeInsight/gradle/GradleConfiguratorTest.kt b/idea/idea-gradle/tests/org/jetbrains/kotlin/idea/codeInsight/gradle/GradleConfiguratorTest.kt
index a7262942e65..cd873a54894 100644
--- a/idea/idea-gradle/tests/org/jetbrains/kotlin/idea/codeInsight/gradle/GradleConfiguratorTest.kt
+++ b/idea/idea-gradle/tests/org/jetbrains/kotlin/idea/codeInsight/gradle/GradleConfiguratorTest.kt
@@ -191,10 +191,10 @@ class GradleConfiguratorTest : GradleImportingTestCase() {
         runReadAction {
             val configurator = findGradleModuleConfigurator()
 
-            val (modules, ableToRunConfigurators) = getConfigurationPossibilities(myProject)
+            val (modules, ableToRunConfigurators) = getConfigurationPossibilitiesForConfigureNotification(myProject)
             assertTrue(ableToRunConfigurators.any { it is KotlinGradleModuleConfigurator })
             assertTrue(ableToRunConfigurators.any { it is KotlinJsGradleModuleConfigurator })
-            val moduleNames = modules.map { it.name }
+            val moduleNames = modules.map { it.baseModule.name }
             assertSameElements(moduleNames, "app")
 
             val moduleNamesFromConfigurator = getCanBeConfiguredModules(myProject, configurator).map { it.name }
@@ -232,7 +232,7 @@ class GradleConfiguratorTest : GradleImportingTestCase() {
         importProject()
 
         runReadAction {
-            assertEmpty(getConfigurationPossibilities(myProject).first)
+            assertEmpty(getConfigurationPossibilitiesForConfigureNotification(myProject).first)
         }
     }
 
@@ -263,7 +263,7 @@ class GradleConfiguratorTest : GradleImportingTestCase() {
         importProject()
 
         runReadAction {
-            assertEmpty(getConfigurationPossibilities(myProject).first)
+            assertEmpty(getConfigurationPossibilitiesForConfigureNotification(myProject).first)
         }
     }
 
diff --git a/idea/idea-jvm/src/org/jetbrains/kotlin/idea/configuration/ConfigureKotlinInProjectUtils.kt b/idea/idea-jvm/src/org/jetbrains/kotlin/idea/configuration/ConfigureKotlinInProjectUtils.kt
index 72c0ced62bb..5f92c4d273a 100644
--- a/idea/idea-jvm/src/org/jetbrains/kotlin/idea/configuration/ConfigureKotlinInProjectUtils.kt
+++ b/idea/idea-jvm/src/org/jetbrains/kotlin/idea/configuration/ConfigureKotlinInProjectUtils.kt
@@ -91,6 +91,10 @@ fun isModuleConfigured(moduleSourceRootGroup: ModuleSourceRootGroup): Boolean {
     }
 }
 
+/**
+ * Returns a list of modules which contain sources in Kotlin.
+ * Note that this method is expensive and should not be called more often than strictly necessary.
+ */
 fun getModulesWithKotlinFiles(project: Project): Collection<Module> {
     if (!runReadAction {
         !project.isDisposed && FileTypeIndex.containsFileOfType (KotlinFileType.INSTANCE, GlobalSearchScope.projectScope(project))
@@ -106,6 +110,10 @@ fun getModulesWithKotlinFiles(project: Project): Collection<Module> {
             }
 }
 
+/**
+ * Returns a list of modules which contain sources in Kotlin, grouped by base module.
+ * Note that this method is expensive and should not be called more often than strictly necessary.
+ */
 fun getConfigurableModulesWithKotlinFiles(project: Project): List<ModuleSourceRootGroup> {
     val modules = getModulesWithKotlinFiles(project)
     if (modules.isEmpty()) return emptyList()
@@ -121,17 +129,13 @@ fun showConfigureKotlinNotificationIfNeeded(module: Module) {
 }
 
 fun showConfigureKotlinNotificationIfNeeded(project: Project, excludeModules: List<Module> = emptyList()) {
-    val notificationString = DumbService.getInstance(project).runReadActionInSmartMode(Computable {
-        val modules = getConfigurableModulesWithKotlinFiles(project).exclude(excludeModules)
-        if (modules.none(::isNotConfiguredNotificationRequired))
-            null
-        else
-            ConfigureKotlinNotification.getNotificationString(project, excludeModules)
+    val notificationState = DumbService.getInstance(project).runReadActionInSmartMode(Computable {
+        ConfigureKotlinNotification.getNotificationState(project, excludeModules)
     })
 
-    if (notificationString != null) {
+    if (notificationState != null) {
         ApplicationManager.getApplication().invokeLater {
-            ConfigureKotlinNotificationManager.notify(project, ConfigureKotlinNotification(project, excludeModules, notificationString))
+            ConfigureKotlinNotificationManager.notify(project, ConfigureKotlinNotification(project, excludeModules, notificationState))
         }
     }
 }
@@ -177,33 +181,43 @@ private fun KotlinProjectConfigurator.canConfigure(moduleSourceRootGroup: Module
         getStatus(moduleSourceRootGroup) == ConfigureKotlinStatus.CAN_BE_CONFIGURED &&
         (allConfigurators().toList() - this).none { it.getStatus(moduleSourceRootGroup) == ConfigureKotlinStatus.CONFIGURED }
 
+/**
+ * Returns a list of modules which contain sources in Kotlin and for which it's possible to run the given configurator.
+ * Note that this method is expensive and should not be called more often than strictly necessary.
+ */
 fun getCanBeConfiguredModulesWithKotlinFiles(project: Project, configurator: KotlinProjectConfigurator): List<Module> {
     val modules = getConfigurableModulesWithKotlinFiles(project)
     return modules.filter { configurator.getStatus(it) == ConfigureKotlinStatus.CAN_BE_CONFIGURED }.map { it.baseModule }
 }
 
-fun getConfigurationPossibilities(
+fun getConfigurationPossibilitiesForConfigureNotification(
     project: Project,
     excludeModules: Collection<Module> = emptyList()
-): Pair<Collection<Module>, Collection<KotlinProjectConfigurator>> {
+): Pair<Collection<ModuleSourceRootGroup>, Collection<KotlinProjectConfigurator>> {
     val modulesWithKotlinFiles = getConfigurableModulesWithKotlinFiles(project).exclude(excludeModules)
     val configurators = allConfigurators()
 
     val runnableConfigurators = mutableSetOf<KotlinProjectConfigurator>()
-    val configurableModules = mutableListOf<Module>()
+    val configurableModules = mutableListOf<ModuleSourceRootGroup>()
 
     // We need to return all modules for which at least one configurator is applicable, as well as all configurators which
     // are applicable for at least one module. At the same time we want to call getStatus() only once for each module/configurator pair.
     for (moduleSourceRootGroup in modulesWithKotlinFiles) {
         var moduleCanBeConfigured = false
+        var moduleAlreadyConfigured = false
         for (configurator in configurators) {
             if (moduleCanBeConfigured && configurator in runnableConfigurators) continue
-            if (configurator.getStatus(moduleSourceRootGroup) == ConfigureKotlinStatus.CAN_BE_CONFIGURED) {
-                moduleCanBeConfigured = true
-                runnableConfigurators.add(configurator)
+            val status = configurator.getStatus(moduleSourceRootGroup)
+            when (status) {
+                ConfigureKotlinStatus.CAN_BE_CONFIGURED -> {
+                    moduleCanBeConfigured = true
+                    runnableConfigurators.add(configurator)
+                }
+                ConfigureKotlinStatus.CONFIGURED -> moduleAlreadyConfigured = true
             }
         }
-        if (moduleCanBeConfigured) configurableModules.add(moduleSourceRootGroup.baseModule)
+        if (moduleCanBeConfigured && !moduleAlreadyConfigured && !SuppressNotificationState.isKotlinNotConfiguredSuppressed(moduleSourceRootGroup))
+            configurableModules.add(moduleSourceRootGroup)
     }
 
     return configurableModules to runnableConfigurators
diff --git a/idea/idea-jvm/src/org/jetbrains/kotlin/idea/configuration/ConfigureKotlinNotificationManager.kt b/idea/idea-jvm/src/org/jetbrains/kotlin/idea/configuration/ConfigureKotlinNotificationManager.kt
index 61ca5e29c0c..13a6b4b1344 100644
--- a/idea/idea-jvm/src/org/jetbrains/kotlin/idea/configuration/ConfigureKotlinNotificationManager.kt
+++ b/idea/idea-jvm/src/org/jetbrains/kotlin/idea/configuration/ConfigureKotlinNotificationManager.kt
@@ -8,8 +8,11 @@ package org.jetbrains.kotlin.idea.configuration
 import com.intellij.notification.Notification
 import com.intellij.notification.NotificationsManager
 import com.intellij.openapi.application.ApplicationManager
+import com.intellij.openapi.diagnostic.Logger
 import com.intellij.openapi.module.Module
+import com.intellij.openapi.module.ModuleManager
 import com.intellij.openapi.project.DumbService
+import com.intellij.openapi.project.IndexNotReadyException
 import com.intellij.openapi.project.Project
 import org.jetbrains.kotlin.idea.configuration.ui.notifications.ConfigureKotlinNotification
 import java.util.concurrent.atomic.AtomicBoolean
@@ -17,9 +20,9 @@ import kotlin.reflect.KClass
 
 object ConfigureKotlinNotificationManager: KotlinSingleNotificationManager<ConfigureKotlinNotification> {
     fun notify(project: Project, excludeModules: List<Module> = emptyList()) {
-        val notificationString = ConfigureKotlinNotification.getNotificationString(project, excludeModules)
-        if (notificationString != null) {
-            notify(project, ConfigureKotlinNotification(project, excludeModules, notificationString))
+        val notificationState = ConfigureKotlinNotification.getNotificationState(project, excludeModules)
+        if (notificationState != null) {
+            notify(project, ConfigureKotlinNotification(project, excludeModules, notificationState))
         }
     }
 
@@ -47,8 +50,7 @@ interface KotlinSingleNotificationManager<in T: Notification> {
         for (oldNotification in notifications) {
             if (oldNotification == notification) {
                 isNotificationExists = true
-            }
-            else {
+            } else {
                 oldNotification?.expire()
             }
         }
@@ -59,20 +61,37 @@ interface KotlinSingleNotificationManager<in T: Notification> {
 private val checkInProgress = AtomicBoolean(false)
 
 fun checkHideNonConfiguredNotifications(project: Project) {
-    if (checkInProgress.get() || ConfigureKotlinNotificationManager.getVisibleNotifications(project).isEmpty()) return
+    if (checkInProgress.get()) return
+    val notification = ConfigureKotlinNotificationManager.getVisibleNotifications(project).firstOrNull() ?: return
 
     ApplicationManager.getApplication().executeOnPooledThread {
         if (!checkInProgress.compareAndSet(false, true)) return@executeOnPooledThread
 
         DumbService.getInstance(project).waitForSmartMode()
-        if (getConfigurableModulesWithKotlinFiles(project).none(::isNotConfiguredNotificationRequired)) {
+        val moduleSourceRootMap = ModuleSourceRootMap(project)
+
+        val hideNotification = try {
+            val moduleSourceRootGroups = notification.notificationState.notConfiguredModules
+                .mapNotNull { ModuleManager.getInstance(project).findModuleByName(it) }
+                .map { moduleSourceRootMap.getWholeModuleGroup(it) }
+            moduleSourceRootGroups.none(::isNotConfiguredNotificationRequired)
+        } catch (e: IndexNotReadyException) {
+            checkInProgress.set(false)
+            ApplicationManager.getApplication().invokeLater {
+                checkHideNonConfiguredNotifications(project)
+            }
+            return@executeOnPooledThread
+        }
+
+        if (hideNotification) {
             ApplicationManager.getApplication().invokeLater {
                 ConfigureKotlinNotificationManager.expireOldNotifications(project)
                 checkInProgress.set(false)
             }
-        }
-        else {
+        } else {
             checkInProgress.set(false)
         }
     }
 }
+
+private val LOG = Logger.getInstance(ConfigureKotlinNotificationManager::class.java)
diff --git a/idea/idea-jvm/src/org/jetbrains/kotlin/idea/configuration/ui/notifications/ConfigureKotlinNotification.kt b/idea/idea-jvm/src/org/jetbrains/kotlin/idea/configuration/ui/notifications/ConfigureKotlinNotification.kt
index 2646c6e083c..2932de5b291 100644
--- a/idea/idea-jvm/src/org/jetbrains/kotlin/idea/configuration/ui/notifications/ConfigureKotlinNotification.kt
+++ b/idea/idea-jvm/src/org/jetbrains/kotlin/idea/configuration/ui/notifications/ConfigureKotlinNotification.kt
@@ -11,19 +11,25 @@ import com.intellij.notification.NotificationType
 import com.intellij.openapi.module.Module
 import com.intellij.openapi.project.Project
 import org.jetbrains.kotlin.idea.configuration.KotlinProjectConfigurator
-import org.jetbrains.kotlin.idea.configuration.getConfigurationPossibilities
+import org.jetbrains.kotlin.idea.configuration.getConfigurationPossibilitiesForConfigureNotification
 import org.jetbrains.kotlin.idea.configuration.getConfiguratorByName
 import org.jetbrains.kotlin.idea.configuration.ui.KotlinConfigurationCheckerComponent
 import javax.swing.event.HyperlinkEvent
 
+data class ConfigureKotlinNotificationState(
+    val notificationString: String,
+    val notConfiguredModules: Collection<String>
+)
+
 class ConfigureKotlinNotification(
     project: Project,
     excludeModules: List<Module>,
-    notificationString: String
+    val notificationState: ConfigureKotlinNotificationState
 ) : Notification(
     KotlinConfigurationCheckerComponent.CONFIGURE_NOTIFICATION_GROUP_ID, "Configure Kotlin",
-    notificationString,
-    NotificationType.WARNING, NotificationListener { notification, event ->
+    notificationState.notificationString,
+    NotificationType.WARNING,
+    NotificationListener { notification, event ->
         if (event.eventType == HyperlinkEvent.EventType.ACTIVATED) {
             val configurator = getConfiguratorByName(event.description) ?: throw AssertionError("Missed action: " + event.description)
             notification.expire()
@@ -46,18 +52,21 @@ class ConfigureKotlinNotification(
     }
 
     companion object {
-        fun getNotificationString(project: Project, excludeModules: Collection<Module>): String? {
-            val (configurableModules, ableToRunConfigurators) = getConfigurationPossibilities(project, excludeModules)
-            if (ableToRunConfigurators.isEmpty()) return null
+        fun getNotificationState(project: Project, excludeModules: Collection<Module>): ConfigureKotlinNotificationState? {
+            val (configurableModules, ableToRunConfigurators) = getConfigurationPossibilitiesForConfigureNotification(project, excludeModules)
+            if (ableToRunConfigurators.isEmpty() || configurableModules.isEmpty()) return null
 
             val isOnlyOneModule = configurableModules.size == 1
 
-            val modulesString = if (isOnlyOneModule) "'${configurableModules.first().name}' module" else "modules"
+            val modulesString = if (isOnlyOneModule) "'${configurableModules.first().baseModule.name}' module" else "modules"
             val links = ableToRunConfigurators.joinToString(separator = "<br/>") { configurator ->
                 getLink(configurator, isOnlyOneModule)
             }
 
-            return "Configure $modulesString in '${project.name}' project<br/> $links"
+            return ConfigureKotlinNotificationState(
+                "Configure $modulesString in '${project.name}' project<br/> $links",
+                configurableModules.map { it.baseModule.name }
+            )
         }
 
         private fun getLink(configurator: KotlinProjectConfigurator, isOnlyOneModule: Boolean): String {