diff --git a/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/kotlin/org/jetbrains/kotlin/gradle/HierarchicalMppIT.kt b/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/kotlin/org/jetbrains/kotlin/gradle/HierarchicalMppIT.kt
index 45dd0697bd5..f73879d5733 100644
--- a/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/kotlin/org/jetbrains/kotlin/gradle/HierarchicalMppIT.kt
+++ b/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/kotlin/org/jetbrains/kotlin/gradle/HierarchicalMppIT.kt
@@ -280,10 +280,9 @@ open class HierarchicalMppIT : KGPBaseTest() {
                         "my-lib-bar-metadata-1.0-all.jar",
                         "third-party-lib-metadata-1.0.jar",
                         "kotlin-stdlib-${buildOptions.kotlinVersion}-all.jar",
-                        "kotlin-test-js-${buildOptions.kotlinVersion}.jar",
                         "kotlin-dom-api-compat-${buildOptions.kotlinVersion}.klib"
-                    ),
-                    transformedArtifacts()
+                    ).toSortedSet(),
+                    transformedArtifacts().toSortedSet()
                 )
             }
         }
@@ -390,7 +389,7 @@ open class HierarchicalMppIT : KGPBaseTest() {
         withGranularMetadata: Boolean,
         gradleVersion: GradleVersion,
         localRepoDir: Path,
-        beforePublishing: TestProject.() -> Unit = { }
+        beforePublishing: TestProject.() -> Unit = { },
     ): TestProject =
         nativeProject(
             projectName = projectName,
@@ -435,10 +434,15 @@ open class HierarchicalMppIT : KGPBaseTest() {
                 sourceSetModuleDependencies = mapOf(
                     "jvmAndJsMain" to setOf("com.example.thirdparty" to "third-party-lib"),
                     "linuxAndJsMain" to emptySet(),
-                    "commonMain" to emptySet()
+                    "commonMain" to setOf("org.jetbrains.kotlin" to "kotlin-stdlib")
                 )
             )
 
+            assertEquals(
+                expectedProjectStructureMetadata.sourceSetModuleDependencies.toSortedMap(),
+                parsedProjectStructureMetadata.sourceSetModuleDependencies.toSortedMap()
+            )
+
             assertEquals(expectedProjectStructureMetadata, parsedProjectStructureMetadata)
         }
 
@@ -483,12 +487,20 @@ open class HierarchicalMppIT : KGPBaseTest() {
 
             val expectedProjectStructureMetadata = expectedProjectStructureMetadata(
                 sourceSetModuleDependencies = mapOf(
-                    "jvmAndJsMain" to setOf(),
+                    "jvmAndJsMain" to emptySet(),
                     "linuxAndJsMain" to emptySet(),
-                    "commonMain" to setOf("com.example.foo" to "my-lib-foo")
+                    "commonMain" to setOf(
+                        "org.jetbrains.kotlin" to "kotlin-stdlib",
+                        "com.example.foo" to "my-lib-foo"
+                    )
                 )
             )
 
+            assertEquals(
+                expectedProjectStructureMetadata.sourceSetModuleDependencies.toSortedMap(),
+                parsedProjectStructureMetadata.sourceSetModuleDependencies.toSortedMap()
+            )
+
             assertEquals(expectedProjectStructureMetadata, parsedProjectStructureMetadata)
         }
 
@@ -597,7 +609,7 @@ open class HierarchicalMppIT : KGPBaseTest() {
     private fun BuildResult.checkNamesOnCompileClasspath(
         taskPath: String,
         shouldInclude: Iterable<Pair<String, String>> = emptyList(),
-        shouldNotInclude: Iterable<Pair<String, String>> = emptyList()
+        shouldNotInclude: Iterable<Pair<String, String>> = emptyList(),
     ) {
         val compilerArgsLine = output.lines().single { "$taskPath Kotlin compiler args:" in it }
         val classpathItems = compilerArgsLine.substringAfter("-classpath").substringBefore(" -").split(File.pathSeparator)
@@ -634,7 +646,7 @@ open class HierarchicalMppIT : KGPBaseTest() {
 
     // the projects used in these tests are similar and only the dependencies differ:
     private fun expectedProjectStructureMetadata(
-        sourceSetModuleDependencies: Map<String, Set<Pair<String, String>>>
+        sourceSetModuleDependencies: Map<String, Set<Pair<String, String>>>,
     ): KotlinProjectStructureMetadata {
 
         val jvmSourceSets = setOf("commonMain", "jvmAndJsMain")
@@ -878,7 +890,8 @@ open class HierarchicalMppIT : KGPBaseTest() {
             gradleVersion = gradleVersion,
             localRepoDir = tempDir
         ) {
-            buildGradleKts.appendText("""
+            buildGradleKts.appendText(
+                """
                 testResolutionToSourcesVariant(
                     "common",
                     KotlinPlatformType.common,
@@ -900,7 +913,8 @@ open class HierarchicalMppIT : KGPBaseTest() {
                     KotlinPlatformType.native,
                     nativePlatform = "linux_x64"
                 )
-            """.trimIndent())
+            """.trimIndent()
+            )
 
             val expectedReports = mapOf(
                 "common" to SourcesVariantResolutionReport(
@@ -909,18 +923,24 @@ open class HierarchicalMppIT : KGPBaseTest() {
                 ),
                 "jvm" to SourcesVariantResolutionReport(
                     files = listOf("lib-jvm-1.0-sources.jar"),
-                    dependencyToVariant = mapOf("test:lib:1.0" to "jvmSourcesElements-published",
-                                                "test:lib-jvm:1.0" to "jvmSourcesElements-published")
+                    dependencyToVariant = mapOf(
+                        "test:lib:1.0" to "jvmSourcesElements-published",
+                        "test:lib-jvm:1.0" to "jvmSourcesElements-published"
+                    )
                 ),
                 "jvm2" to SourcesVariantResolutionReport(
                     files = listOf("lib-jvm2-1.0-sources.jar"),
-                    dependencyToVariant = mapOf("test:lib:1.0" to "jvm2SourcesElements-published",
-                                                "test:lib-jvm2:1.0" to "jvm2SourcesElements-published")
+                    dependencyToVariant = mapOf(
+                        "test:lib:1.0" to "jvm2SourcesElements-published",
+                        "test:lib-jvm2:1.0" to "jvm2SourcesElements-published"
+                    )
                 ),
                 "linuxX64" to SourcesVariantResolutionReport(
                     files = listOf("lib-linuxx64-1.0-sources.jar"),
-                    dependencyToVariant = mapOf("test:lib:1.0" to "linuxX64SourcesElements-published",
-                                                "test:lib-linuxx64:1.0" to "linuxX64SourcesElements-published")
+                    dependencyToVariant = mapOf(
+                        "test:lib:1.0" to "linuxX64SourcesElements-published",
+                        "test:lib-linuxx64:1.0" to "linuxX64SourcesElements-published"
+                    )
                 ),
             )
 
@@ -1028,7 +1048,11 @@ open class HierarchicalMppIT : KGPBaseTest() {
     fun testNativeLeafTestSourceSetsKt46417(gradleVersion: GradleVersion) {
         with(project("kt-46417-ios-test-source-sets", gradleVersion = gradleVersion)) {
             testDependencyTransformations("p2") { reports ->
-                val report = reports.singleOrNull { it.sourceSetName == "iosArm64Test" && it.scope == "implementation" }
+                val report = reports.singleOrNull {
+                    it.sourceSetName == "iosArm64Test" &&
+                            it.scope == "implementation" &&
+                            it.groupAndModule.endsWith(":p1")
+                }
                 assertNotNull(report, "No single report for 'iosArm64' and implementation scope")
                 assertEquals(setOf("commonMain", "iosMain"), report.allVisibleSourceSets)
                 assertTrue(report.groupAndModule.endsWith(":p1"))
@@ -1217,7 +1241,7 @@ open class HierarchicalMppIT : KGPBaseTest() {
 
     private fun TestProject.testDependencyTransformations(
         subproject: String? = null,
-        check: BuildResult.(reports: Iterable<DependencyTransformationReport>) -> Unit
+        check: BuildResult.(reports: Iterable<DependencyTransformationReport>) -> Unit,
     ) {
         val buildGradleKts = (subproject?.let { subProject(subproject).buildGradleKts } ?: buildGradleKts).toFile()
         assert(buildGradleKts.exists()) { "Kotlin scripts are not found." }
@@ -1277,7 +1301,7 @@ open class HierarchicalMppIT : KGPBaseTest() {
         val groupAndModule: String,
         val allVisibleSourceSets: Set<String>,
         val newVisibleSourceSets: Set<String>, // those which the dependsOn parents don't see
-        val useFiles: List<File>
+        val useFiles: List<File>,
     ) {
         val isExcluded: Boolean get() = allVisibleSourceSets.isEmpty()
 
@@ -1304,7 +1328,7 @@ open class HierarchicalMppIT : KGPBaseTest() {
 
     private data class SourcesVariantResolutionReport(
         val files: List<String>,
-        val dependencyToVariant: Map<String, String>
+        val dependencyToVariant: Map<String, String>,
     ) {
         companion object {
             fun parse(output: String, targetNames: Iterable<String>): Map<String, SourcesVariantResolutionReport> {
@@ -1319,7 +1343,7 @@ open class HierarchicalMppIT : KGPBaseTest() {
 
             private fun List<String>.betweenMarkers(
                 start: String,
-                end: String
+                end: String,
             ): List<String> {
                 val startPos = indexOf(start)
                 val endPos = indexOf(end)
diff --git a/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/resources/testProject/hierarchical-mpp-project-dependency/my-app/build.gradle.kts b/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/resources/testProject/hierarchical-mpp-project-dependency/my-app/build.gradle.kts
index 28d56b51cd1..a6d64867238 100644
--- a/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/resources/testProject/hierarchical-mpp-project-dependency/my-app/build.gradle.kts
+++ b/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/resources/testProject/hierarchical-mpp-project-dependency/my-app/build.gradle.kts
@@ -20,7 +20,6 @@ kotlin {
         val commonMain by getting {
             dependencies {
                 api(project(":my-lib-bar"))
-                implementation(kotlin("stdlib-common"))
             }
         }
 
diff --git a/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/resources/testProject/hierarchical-mpp-project-dependency/my-lib-bar/build.gradle.kts b/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/resources/testProject/hierarchical-mpp-project-dependency/my-lib-bar/build.gradle.kts
index b937cd26b0a..7699f681d86 100644
--- a/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/resources/testProject/hierarchical-mpp-project-dependency/my-lib-bar/build.gradle.kts
+++ b/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/resources/testProject/hierarchical-mpp-project-dependency/my-lib-bar/build.gradle.kts
@@ -21,7 +21,6 @@ kotlin {
         val commonMain by getting {
             dependencies {
                 api(project(":my-lib-foo"))
-                implementation(kotlin("stdlib-common"))
             }
         }
 
diff --git a/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/resources/testProject/hierarchical-mpp-project-dependency/my-lib-foo/build.gradle.kts b/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/resources/testProject/hierarchical-mpp-project-dependency/my-lib-foo/build.gradle.kts
index d05ae438dbd..e8953c55a75 100644
--- a/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/resources/testProject/hierarchical-mpp-project-dependency/my-lib-foo/build.gradle.kts
+++ b/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/resources/testProject/hierarchical-mpp-project-dependency/my-lib-foo/build.gradle.kts
@@ -19,11 +19,7 @@ kotlin {
     linuxX64()
 
     sourceSets {
-        val commonMain by getting {
-            dependencies {
-                implementation(kotlin("stdlib-common"))
-            }
-        }
+        val commonMain by getting
 
         val commonTest by getting {
             dependencies {
diff --git a/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/resources/testProject/hierarchical-mpp-project-dependency/third-party-lib/build.gradle.kts b/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/resources/testProject/hierarchical-mpp-project-dependency/third-party-lib/build.gradle.kts
index 1dbee8d8c6f..b9c5da055c7 100644
--- a/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/resources/testProject/hierarchical-mpp-project-dependency/third-party-lib/build.gradle.kts
+++ b/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/resources/testProject/hierarchical-mpp-project-dependency/third-party-lib/build.gradle.kts
@@ -16,11 +16,7 @@ kotlin {
     js()
 
     sourceSets {
-        val commonMain by getting {
-            dependencies {
-                implementation(kotlin("stdlib-common"))
-            }
-        }
+        val commonMain by getting
         val commonTest by getting {
             dependencies {
                 implementation(kotlin("test-common"))
diff --git a/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/resources/testProject/hierarchical-mpp-published-modules/my-app/build.gradle.kts b/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/resources/testProject/hierarchical-mpp-published-modules/my-app/build.gradle.kts
index dddf4b0fd6f..5d0bc145f99 100644
--- a/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/resources/testProject/hierarchical-mpp-published-modules/my-app/build.gradle.kts
+++ b/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/resources/testProject/hierarchical-mpp-published-modules/my-app/build.gradle.kts
@@ -21,7 +21,6 @@ kotlin {
         val commonMain by getting {
             dependencies {
                 api("com.example.bar:my-lib-bar:1.0")
-                implementation(kotlin("stdlib-common"))
             }
         }
 
diff --git a/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/resources/testProject/hierarchical-mpp-published-modules/my-lib-bar/build.gradle.kts b/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/resources/testProject/hierarchical-mpp-published-modules/my-lib-bar/build.gradle.kts
index 4fb376f3b7c..21d57d9b809 100644
--- a/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/resources/testProject/hierarchical-mpp-published-modules/my-lib-bar/build.gradle.kts
+++ b/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/resources/testProject/hierarchical-mpp-published-modules/my-lib-bar/build.gradle.kts
@@ -22,7 +22,6 @@ kotlin {
         val commonMain by getting {
             dependencies {
                 api("com.example.foo:my-lib-foo:1.0")
-                implementation(kotlin("stdlib-common"))
             }
         }
 
diff --git a/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/resources/testProject/hierarchical-mpp-published-modules/my-lib-foo/build.gradle.kts b/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/resources/testProject/hierarchical-mpp-published-modules/my-lib-foo/build.gradle.kts
index 5bdbc563bde..88c3cecfadc 100644
--- a/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/resources/testProject/hierarchical-mpp-published-modules/my-lib-foo/build.gradle.kts
+++ b/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/resources/testProject/hierarchical-mpp-published-modules/my-lib-foo/build.gradle.kts
@@ -20,11 +20,7 @@ kotlin {
     linuxX64()
 
     sourceSets {
-        val commonMain by getting {
-            dependencies {
-                implementation(kotlin("stdlib-common"))
-            }
-        }
+        val commonMain by getting
 
         val commonTest by getting {
             dependencies {