diff --git a/compiler/cli/src/org/jetbrains/kotlin/cli/jvm/compiler/KotlinToJVMBytecodeCompiler.kt b/compiler/cli/src/org/jetbrains/kotlin/cli/jvm/compiler/KotlinToJVMBytecodeCompiler.kt
index 80b91b123e3..862235a02f2 100644
--- a/compiler/cli/src/org/jetbrains/kotlin/cli/jvm/compiler/KotlinToJVMBytecodeCompiler.kt
+++ b/compiler/cli/src/org/jetbrains/kotlin/cli/jvm/compiler/KotlinToJVMBytecodeCompiler.kt
@@ -472,8 +472,8 @@ object KotlinToJVMBytecodeCompiler {
             // Clear all diagnostic messages
             configuration[CLIConfigurationKeys.MESSAGE_COLLECTOR_KEY]?.clear()
 
-            // Repeat analysis with additional Java roots (kapt generated sources)
-            return analyze(environment)
+            // Repeat analysis with additional source roots generated by compiler plugins.
+            return repeatAnalysisIfNeeded(analyze(environment), environment)
         }
 
         return result