Fix exception from ProjectResolutionFacade when switching some definition off in settings

Fix AbstractScriptDefinitionsOrderTest
Remove updating script dependencies in test because in affects cache behavior: script will be already up to date when highlighting is called for the second time

idea/idea-core/src/org/jetbrains/kotlin/idea/core/script/ScriptConfigurationManagerImpl.kt

@@ -100,6 +100,8 @@ class ScriptConfigurationManagerImpl internal constructor(private val project: P
      * Start re-highlighting for opened scripts
      */
     override fun clearConfigurationCachesAndRehighlight() {
+        ScriptDependenciesModificationTracker.getInstance(project).incModificationCount()
+
         clearAndRehighlight()
     }