diff --git a/libraries/tools/kotlin-gradle-plugin/src/common/kotlin/org/jetbrains/kotlin/compilerRunner/GradleKotlinCompilerRunner.kt b/libraries/tools/kotlin-gradle-plugin/src/common/kotlin/org/jetbrains/kotlin/compilerRunner/GradleKotlinCompilerRunner.kt
index dd84915a294..ca3e1b474d8 100644
--- a/libraries/tools/kotlin-gradle-plugin/src/common/kotlin/org/jetbrains/kotlin/compilerRunner/GradleKotlinCompilerRunner.kt
+++ b/libraries/tools/kotlin-gradle-plugin/src/common/kotlin/org/jetbrains/kotlin/compilerRunner/GradleKotlinCompilerRunner.kt
@@ -80,7 +80,6 @@ internal open class GradleCompilerRunner(
     fun runJvmCompilerAsync(
         sourcesToCompile: List<File>,
         commonSources: List<File>,
-        javaSourceRoots: Iterable<File>,
         javaPackagePrefix: String?,
         args: K2JVMCompilerArguments,
         environment: GradleCompilerEnvironment,
@@ -89,7 +88,6 @@ internal open class GradleCompilerRunner(
     ): WorkQueue? {
         args.freeArgs += sourcesToCompile.map { it.absolutePath }
         args.commonSources = commonSources.map { it.absolutePath }.toTypedArray()
-        args.javaSourceRoots = javaSourceRoots.map { it.absolutePath }.toTypedArray()
         args.javaPackagePrefix = javaPackagePrefix
         if (args.jdkHome == null && !args.noJdk) args.jdkHome = jdkHome.absolutePath
         loggerProvider.kotlinInfo("Kotlin compilation 'jdkHome' argument: ${args.jdkHome}")
diff --git a/libraries/tools/kotlin-gradle-plugin/src/common/kotlin/org/jetbrains/kotlin/gradle/internal/kapt/KaptWithKotlincTask.kt b/libraries/tools/kotlin-gradle-plugin/src/common/kotlin/org/jetbrains/kotlin/gradle/internal/kapt/KaptWithKotlincTask.kt
index fda91e1fd51..ae0e1b68dcb 100644
--- a/libraries/tools/kotlin-gradle-plugin/src/common/kotlin/org/jetbrains/kotlin/gradle/internal/kapt/KaptWithKotlincTask.kt
+++ b/libraries/tools/kotlin-gradle-plugin/src/common/kotlin/org/jetbrains/kotlin/gradle/internal/kapt/KaptWithKotlincTask.kt
@@ -122,9 +122,8 @@ abstract class KaptWithKotlincTask @Inject constructor(
             metrics.get(),
         )
         compilerRunner.runJvmCompilerAsync(
-            sourcesToCompile = emptyList(),
+            sourcesToCompile = source.files.toList(),
             commonSources = emptyList(),
-            javaSourceRoots = source.files,
             javaPackagePrefix = javaPackagePrefix.orNull,
             args = args,
             environment = environment,
diff --git a/libraries/tools/kotlin-gradle-plugin/src/common/kotlin/org/jetbrains/kotlin/gradle/tasks/Tasks.kt b/libraries/tools/kotlin-gradle-plugin/src/common/kotlin/org/jetbrains/kotlin/gradle/tasks/Tasks.kt
index 40b7564c189..bf0362fa79f 100644
--- a/libraries/tools/kotlin-gradle-plugin/src/common/kotlin/org/jetbrains/kotlin/gradle/tasks/Tasks.kt
+++ b/libraries/tools/kotlin-gradle-plugin/src/common/kotlin/org/jetbrains/kotlin/gradle/tasks/Tasks.kt
@@ -723,9 +723,8 @@ abstract class KotlinCompile @Inject constructor(
         logger.info("Script source files: ${scriptSources.joinToString()}")
         logger.info("Script file extensions: ${scriptExtensions.get().joinToString()}")
         compilerRunner.runJvmCompilerAsync(
-            (kotlinSources + scriptSources).toList(),
+            (kotlinSources + scriptSources + javaSources.files).toList(),
             commonSourceSet.toList(),
-            javaSources.files, // we need here only directories where Java sources are located
             javaPackagePrefix,
             args,
             environment,