diff --git a/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/kotlin/org/jetbrains/kotlin/gradle/ConfigurationCacheIT.kt b/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/kotlin/org/jetbrains/kotlin/gradle/ConfigurationCacheIT.kt
index d116e233a8d..dc207598bb1 100644
--- a/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/kotlin/org/jetbrains/kotlin/gradle/ConfigurationCacheIT.kt
+++ b/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/kotlin/org/jetbrains/kotlin/gradle/ConfigurationCacheIT.kt
@@ -11,6 +11,8 @@ import org.jetbrains.kotlin.gradle.report.BuildReportType
 import org.jetbrains.kotlin.gradle.testbase.*
 import org.jetbrains.kotlin.konan.target.HostManager
 import org.junit.jupiter.api.DisplayName
+import org.junit.jupiter.api.io.TempDir
+import java.nio.file.Path
 
 @DisplayName("Configuration cache")
 class ConfigurationCacheIT : AbstractConfigurationCacheIT() {
@@ -126,14 +128,23 @@ class ConfigurationCacheIT : AbstractConfigurationCacheIT() {
         maxVersion = TestVersions.Gradle.G_8_1
     )
     @GradleTest
-    fun testCommonizer(gradleVersion: GradleVersion) {
+    fun testCommonizer(gradleVersion: GradleVersion, @TempDir konanHome: Path) {
         project("native-configuration-cache", gradleVersion) {
-            // results of :commonizeNativeDistribution is not cleanable so just check if it works with configuration cache on first run
             build(
                 ":commonizeNativeDistribution",
             ) {
                 assertOutputContains("0 problems were found storing the configuration cache.")
             }
+
+            // Override kotlin native home location to be able to run clean native distribution commonization task
+            // since by default it is global location on host
+            val buildOptions = defaultBuildOptions.copy(
+                freeArgs = listOf("-Porg.jetbrains.kotlin.native.home=$konanHome")
+            )
+            build(":cleanNativeDistributionCommonization", buildOptions = buildOptions) {
+                assertOutputContains("0 problems were found storing the configuration cache.")
+            }
+
             testConfigurationCacheOf(":lib:commonizeCInterop")
         }
     }
diff --git a/libraries/tools/kotlin-gradle-plugin/src/common/kotlin/org/jetbrains/kotlin/gradle/targets/native/internal/CommonizerTasks.kt b/libraries/tools/kotlin-gradle-plugin/src/common/kotlin/org/jetbrains/kotlin/gradle/targets/native/internal/CommonizerTasks.kt
index c056584722c..b85d22c4530 100644
--- a/libraries/tools/kotlin-gradle-plugin/src/common/kotlin/org/jetbrains/kotlin/gradle/targets/native/internal/CommonizerTasks.kt
+++ b/libraries/tools/kotlin-gradle-plugin/src/common/kotlin/org/jetbrains/kotlin/gradle/targets/native/internal/CommonizerTasks.kt
@@ -8,6 +8,10 @@ package org.jetbrains.kotlin.gradle.targets.native.internal
 import org.gradle.api.DefaultTask
 import org.gradle.api.Project
 import org.gradle.api.Task
+import org.gradle.api.file.FileSystemOperations
+import org.gradle.api.provider.Property
+import org.gradle.api.tasks.OutputDirectory
+import org.gradle.api.tasks.TaskAction
 import org.gradle.api.tasks.TaskProvider
 import org.jetbrains.kotlin.compilerRunner.maybeCreateCommonizerClasspathConfiguration
 import org.jetbrains.kotlin.gradle.internal.isInIdeaSync
@@ -18,6 +22,8 @@ import org.jetbrains.kotlin.gradle.plugin.ide.ideaImportDependsOn
 import org.jetbrains.kotlin.gradle.plugin.whenEvaluated
 import org.jetbrains.kotlin.gradle.tasks.dependsOn
 import org.jetbrains.kotlin.gradle.tasks.locateOrRegisterTask
+import java.io.File
+import javax.inject.Inject
 
 internal val Project.isCInteropCommonizationEnabled: Boolean get() = PropertiesProvider(this).enableCInteropCommonization
 
@@ -140,7 +146,7 @@ internal val Project.commonizeNativeDistributionTask: TaskProvider<NativeDistrib
         )
     }
 
-internal val Project.cleanNativeDistributionCommonizerTask: TaskProvider<DefaultTask>?
+internal val Project.cleanNativeDistributionCommonizerTask: TaskProvider<CleanNativeDistributionCommonizerTask>?
     get() {
         val commonizeNativeDistributionTask = commonizeNativeDistributionTask ?: return null
         return rootProject.locateOrRegisterTask(
@@ -149,15 +155,25 @@ internal val Project.cleanNativeDistributionCommonizerTask: TaskProvider<Default
                 group = "interop"
                 description = "Deletes all previously commonized klib's from the Kotlin/Native distribution"
 
-                val commonizerDirectory = commonizeNativeDistributionTask.map { it.rootOutputDirectory }
-                outputs.dir(commonizerDirectory)
-
-                doFirst {
-                    NativeDistributionCommonizerLock(commonizerDirectory.get()).withLock { lockFile ->
-                        val files = commonizerDirectory.get().listFiles().orEmpty().toSet() - lockFile
-                        delete(*files.toTypedArray())
-                    }
-                }
+                commonizerDirectory.set(commonizeNativeDistributionTask.map { it.rootOutputDirectory })
             }
         )
     }
+
+internal abstract class CleanNativeDistributionCommonizerTask : DefaultTask() {
+    @get:Inject
+    abstract val fileSystemOperations: FileSystemOperations
+
+    @get:OutputDirectory
+    abstract val commonizerDirectory: Property<File>
+
+    @TaskAction
+    fun action() {
+        NativeDistributionCommonizerLock(commonizerDirectory.get()).withLock { lockFile ->
+            val files = commonizerDirectory.get().listFiles().orEmpty().toSet() - lockFile
+            fileSystemOperations.delete {
+                it.delete(files)
+            }
+        }
+    }
+}