[Gradle] Remove metadata dependencies transformation for runtimeOnly

Kotlin Metadata KLIBs cannot be used in runtime thus
we don't have to transform composite JARs that contain
metadata per source set for runtimeOnly dependencies scopes.

^KT-55230 Fixed

libraries/tools/kotlin-gradle-plugin-api/src/common/kotlin/org/jetbrains/kotlin/gradle/plugin/KotlinSourceSet.kt

@@ -28,6 +28,7 @@ interface KotlinSourceSet : Named, HasKotlinDependencies {
     val apiMetadataConfigurationName: String
     val implementationMetadataConfigurationName: String
     val compileOnlyMetadataConfigurationName: String
+    @Deprecated(message = "KT-55230: RuntimeOnly scope is not supported for metadata dependency transformation")
     val runtimeOnlyMetadataConfigurationName: String
 
     override val relatedConfigurationNames: List<String>
@@ -36,7 +37,6 @@ interface KotlinSourceSet : Named, HasKotlinDependencies {
                     apiMetadataConfigurationName,
                     implementationMetadataConfigurationName,
                     compileOnlyMetadataConfigurationName,
-                    runtimeOnlyMetadataConfigurationName
                 )
 
     companion object {