[Analysis API] use createSearchScopeByLibraryRoots for test libraries

As it is more similar to production. Also, fixed scope search for klib.
Now we register main binary modules before to avoid duplication with
libraries from createLibrariesByCompilerConfigurators as now we can
have a declared library and regular sources

^KT-62888
^KT-62651

analysis/analysis-api-standalone/analysis-api-standalone-base/src/org/jetbrains/kotlin/analysis/api/standalone/base/project/structure/StandaloneProjectFactory.kt

@@ -1,5 +1,5 @@
 /*
- * Copyright 2010-2022 JetBrains s.r.o. and Kotlin Programming Language contributors.
+ * Copyright 2010-2024 JetBrains s.r.o. and Kotlin Programming Language contributors.
  * Use of this source code is governed by the Apache 2.0 license that can be found in the license/LICENSE.txt file.
  */
 
@@ -53,6 +53,7 @@ import org.jetbrains.kotlin.cli.jvm.modules.CliJavaModuleResolver
 import org.jetbrains.kotlin.cli.jvm.modules.CoreJrtFileSystem
 import org.jetbrains.kotlin.cli.jvm.modules.JavaModuleGraph
 import org.jetbrains.kotlin.config.*
+import org.jetbrains.kotlin.library.KLIB_FILE_EXTENSION
 import org.jetbrains.kotlin.load.java.structure.impl.source.JavaElementSourceFactory
 import org.jetbrains.kotlin.load.kotlin.MetadataFinderFactory
 import org.jetbrains.kotlin.load.kotlin.VirtualFileFinderFactory
@@ -374,7 +375,7 @@ object StandaloneProjectFactory {
         return roots.mapNotNull { path ->
             val pathString = FileUtil.toSystemIndependentName(path.toAbsolutePath().toString())
             when {
-                pathString.endsWith(JAR_PROTOCOL) -> {
+                pathString.endsWith(JAR_PROTOCOL) || pathString.endsWith(KLIB_FILE_EXTENSION) -> {
                     environment.environment.jarFileSystem.findFileByPath(pathString + JAR_SEPARATOR)
                 }