diff --git a/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/kotlin/org/jetbrains/kotlin/gradle/Kotlin2JsGradlePluginIT.kt b/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/kotlin/org/jetbrains/kotlin/gradle/Kotlin2JsGradlePluginIT.kt
index 8ace11002e2..5987b1fd371 100644
--- a/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/kotlin/org/jetbrains/kotlin/gradle/Kotlin2JsGradlePluginIT.kt
+++ b/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/kotlin/org/jetbrains/kotlin/gradle/Kotlin2JsGradlePluginIT.kt
@@ -1193,14 +1193,13 @@ abstract class AbstractKotlin2JsGradlePluginIT(protected val irBackend: Boolean)
                 |                api(project(":base"))
                 |                implementation(project(":base"))
                 |                compileOnly(project(":base"))
-                |                runtimeOnly(project(":base"))
                 |            }
                 |        }
                 |    }
                 |
                 |task("printMetadataFiles") {
                 |    doFirst {
-                |        listOf("api", "implementation", "compileOnly", "runtimeOnly").forEach { kind ->
+                |        listOf("api", "implementation", "compileOnly").forEach { kind ->
                 |            val configuration = configurations.getByName(kind + "DependenciesMetadata")
                 |            configuration.files.forEach { println("$pathPrefix" + configuration.name + "->" + it.name) }
                 |        }
@@ -1223,7 +1222,7 @@ abstract class AbstractKotlin2JsGradlePluginIT(protected val irBackend: Boolean)
                     .toSet()
 
                 assertEquals(
-                    listOf("api", "implementation", "compileOnly", "runtimeOnly").map {
+                    listOf("api", "implementation", "compileOnly").map {
                         "$it$METADATA_CONFIGURATION_NAME_SUFFIX" to expectedFileName
                     }.toSet(),
                     paths
diff --git a/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/kotlin/org/jetbrains/kotlin/gradle/NewMultiplatformIT.kt b/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/kotlin/org/jetbrains/kotlin/gradle/NewMultiplatformIT.kt
index ce06ebd4f4e..434af4a4976 100644
--- a/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/kotlin/org/jetbrains/kotlin/gradle/NewMultiplatformIT.kt
+++ b/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/kotlin/org/jetbrains/kotlin/gradle/NewMultiplatformIT.kt
@@ -919,14 +919,13 @@ class NewMultiplatformIT : BaseGradleIT() {
                                 // add these dependencies to check that they are resolved to metadata
                                 api 'com.example:sample-lib:1.0'
                                 compileOnly 'com.example:sample-lib:1.0'
-                                runtimeOnly 'com.example:sample-lib:1.0'
                             }
                         }
                     }
 
                     task('printMetadataFiles') {
                         doFirst {
-                            ['Api', 'Implementation', 'CompileOnly', 'RuntimeOnly'].each { kind ->
+                            ['Api', 'Implementation', 'CompileOnly'].each { kind ->
                                 def configuration = configurations.getByName("commonMain${'$'}kind" + '$METADATA_CONFIGURATION_NAME_SUFFIX')
                                 configuration.files.each { println '$pathPrefix' + configuration.name + '->' + it.name }
                             }
@@ -947,7 +946,7 @@ class NewMultiplatformIT : BaseGradleIT() {
                     .toSet()
 
                 Assert.assertEquals(
-                    listOf("Api", "Implementation", "CompileOnly", "RuntimeOnly").map {
+                    listOf("Api", "Implementation", "CompileOnly").map {
                         "commonMain$it$METADATA_CONFIGURATION_NAME_SUFFIX" to expectedFileName
                     }.toSet(),
                     paths
@@ -999,14 +998,13 @@ class NewMultiplatformIT : BaseGradleIT() {
                                 api 'com.example:sample-lib-nodejs:1.0'
                                 implementation 'com.example:sample-lib-nodejs:1.0'
                                 compileOnly 'com.example:sample-lib-nodejs:1.0'
-                                runtimeOnly 'com.example:sample-lib-nodejs:1.0'
                             }
                         }
                     }
 
                     task('printMetadataFiles') {
                         doFirst {
-                            ['Api', 'Implementation', 'CompileOnly', 'RuntimeOnly'].each { kind ->
+                            ['Api', 'Implementation', 'CompileOnly'].each { kind ->
                                 def configuration = configurations.getByName("nodeJsMain${'$'}kind" + '$METADATA_CONFIGURATION_NAME_SUFFIX')
                                 configuration.files.each { println '$pathPrefix' + configuration.name + '->' + it.name }
                             }
@@ -1030,7 +1028,7 @@ class NewMultiplatformIT : BaseGradleIT() {
                     .toSet()
 
                 Assert.assertEquals(
-                    listOf("Api", "Implementation", "CompileOnly", "RuntimeOnly").map {
+                    listOf("Api", "Implementation", "CompileOnly").map {
                         "nodeJsMain$it$METADATA_CONFIGURATION_NAME_SUFFIX" to expectedFileName
                     }.toSet(),
                     paths
@@ -1541,10 +1539,10 @@ class NewMultiplatformIT : BaseGradleIT() {
                     .count()
             )
 
+            // All scoped DependenciesMetadata should resolve consistently into the same version
             assertContains(">> :app:testExplicitKotlinVersionApiDependenciesMetadata --> kotlin-reflect-1.3.0.jar")
-            assertContains(">> :app:testExplicitKotlinVersionImplementationDependenciesMetadata --> kotlin-reflect-1.2.71.jar")
-            assertContains(">> :app:testExplicitKotlinVersionCompileOnlyDependenciesMetadata --> kotlin-reflect-1.2.70.jar")
-            assertContains(">> :app:testExplicitKotlinVersionRuntimeOnlyDependenciesMetadata --> kotlin-reflect-1.2.60.jar")
+            assertContains(">> :app:testExplicitKotlinVersionImplementationDependenciesMetadata --> kotlin-reflect-1.3.0.jar")
+            assertContains(">> :app:testExplicitKotlinVersionCompileOnlyDependenciesMetadata --> kotlin-reflect-1.3.0.jar")
 
             assertContains(">> :app:testProjectWithConfigurationApiDependenciesMetadata --> output.txt")
         }
diff --git a/libraries/tools/kotlin-gradle-plugin/src/common/kotlin/org/jetbrains/kotlin/gradle/plugin/sources/DefaultKotlinSourceSet.kt b/libraries/tools/kotlin-gradle-plugin/src/common/kotlin/org/jetbrains/kotlin/gradle/plugin/sources/DefaultKotlinSourceSet.kt
index d6c9678d1c2..a3609345632 100644
--- a/libraries/tools/kotlin-gradle-plugin/src/common/kotlin/org/jetbrains/kotlin/gradle/plugin/sources/DefaultKotlinSourceSet.kt
+++ b/libraries/tools/kotlin-gradle-plugin/src/common/kotlin/org/jetbrains/kotlin/gradle/plugin/sources/DefaultKotlinSourceSet.kt
@@ -162,7 +162,7 @@ abstract class DefaultKotlinSourceSet @Inject constructor(
 
     fun getAdditionalVisibleSourceSets(): List<KotlinSourceSet> = getVisibleSourceSetsFromAssociateCompilations(this)
 
-    private fun getDependenciesTransformation(): Iterable<MetadataDependencyTransformation> {
+    internal fun getDependenciesTransformation(): Iterable<MetadataDependencyTransformation> {
         val metadataDependencyResolutionByModule =
             compileDependenciesTransformation.metadataDependencyResolutions
                 .associateBy { ModuleIds.fromComponent(project, it.dependency) }
diff --git a/libraries/tools/kotlin-gradle-plugin/src/functionalTest/kotlin/org/jetbrains/kotlin/gradle/ConfigurationsTest.kt b/libraries/tools/kotlin-gradle-plugin/src/functionalTest/kotlin/org/jetbrains/kotlin/gradle/ConfigurationsTest.kt
index 6a2ada4602b..39e805e9659 100644
--- a/libraries/tools/kotlin-gradle-plugin/src/functionalTest/kotlin/org/jetbrains/kotlin/gradle/ConfigurationsTest.kt
+++ b/libraries/tools/kotlin-gradle-plugin/src/functionalTest/kotlin/org/jetbrains/kotlin/gradle/ConfigurationsTest.kt
@@ -76,12 +76,10 @@ class ConfigurationsTest : MultiplatformExtensionTest() {
             "MainApiDependenciesMetadata",
             "MainCompileOnlyDependenciesMetadata",
             "MainImplementationDependenciesMetadata",
-            "MainRuntimeOnlyDependenciesMetadata",
 
             "TestApiDependenciesMetadata",
             "TestCompileOnlyDependenciesMetadata",
             "TestImplementationDependenciesMetadata",
-            "TestRuntimeOnlyDependenciesMetadata",
         )
 
         // WASM
@@ -99,7 +97,6 @@ class ConfigurationsTest : MultiplatformExtensionTest() {
             "ApiDependenciesMetadata",
             "CompileOnlyDependenciesMetadata",
             "ImplementationDependenciesMetadata",
-            "RuntimeOnlyDependenciesMetadata",
         )
 
         // allJs
diff --git a/libraries/tools/kotlin-gradle-plugin/src/functionalTest/kotlin/org/jetbrains/kotlin/gradle/KT46273JvmTargetAndOrphanTestSourceSetTest.kt b/libraries/tools/kotlin-gradle-plugin/src/functionalTest/kotlin/org/jetbrains/kotlin/gradle/KT46273JvmTargetAndOrphanTestSourceSetTest.kt
index 83a5133501f..4ccc08313bc 100644
--- a/libraries/tools/kotlin-gradle-plugin/src/functionalTest/kotlin/org/jetbrains/kotlin/gradle/KT46273JvmTargetAndOrphanTestSourceSetTest.kt
+++ b/libraries/tools/kotlin-gradle-plugin/src/functionalTest/kotlin/org/jetbrains/kotlin/gradle/KT46273JvmTargetAndOrphanTestSourceSetTest.kt
@@ -41,8 +41,6 @@ class KT46273JvmTargetAndOrphanTestSourceSetTest : MultiplatformExtensionTest()
 
 	    The dependencies' transformation will be called by the IDE during import.
          */
-        KotlinDependencyScope.values().forEach { scope ->
-            orphanTestSourceSet.getDependenciesTransformation(scope)
-        }
+        orphanTestSourceSet.getDependenciesTransformation()
     }
 }