diff --git a/jps/jps-plugin/jps-tests/test/org/jetbrains/kotlin/jps/build/KotlinJpsBuildTest.kt b/jps/jps-plugin/jps-tests/test/org/jetbrains/kotlin/jps/build/KotlinJpsBuildTest.kt
index 030c6284145..b065e8962a4 100644
--- a/jps/jps-plugin/jps-tests/test/org/jetbrains/kotlin/jps/build/KotlinJpsBuildTest.kt
+++ b/jps/jps-plugin/jps-tests/test/org/jetbrains/kotlin/jps/build/KotlinJpsBuildTest.kt
@@ -388,8 +388,18 @@ class KotlinJpsBuildTest : AbstractKotlinJpsBuildTestCase() {
         buildResult.assertSuccessful()
 
         val warnings = buildResult.getMessages(BuildMessage.Kind.WARNING)
-        assertEquals("Warning about duplicate module definition: $warnings", 1, warnings.size)
-        assertEquals("Module \"srcAndTests\" is defined in more, than one file", warnings.first().messageText)
+        assertEquals("Warning about duplicate module definition: $warnings", 2, warnings.size)
+        assertEquals("Module \"srcAndTests\" is defined in more, than one file", warnings[0].messageText)
+        assertEquals("Module \"srcAndTests\" is defined in more, than one file", warnings[1].messageText)
+    }
+
+    fun testKotlinJavaScriptProjectWithTwoSrcModuleDependency() {
+        initProject(JS_STDLIB)
+        val buildResult = makeAll()
+        buildResult.assertSuccessful()
+
+        val warnings = buildResult.getMessages(BuildMessage.Kind.WARNING)
+        assertEquals("Warning about duplicate module definition: $warnings", 0, warnings.size)
     }
 
     fun testExcludeFolderInSourceRoot() {
diff --git a/jps/jps-plugin/src/org/jetbrains/kotlin/jps/build/JpsJsModuleUtils.kt b/jps/jps-plugin/src/org/jetbrains/kotlin/jps/build/JpsJsModuleUtils.kt
index 9dc917535ce..bdddc9118ee 100644
--- a/jps/jps-plugin/src/org/jetbrains/kotlin/jps/build/JpsJsModuleUtils.kt
+++ b/jps/jps-plugin/src/org/jetbrains/kotlin/jps/build/JpsJsModuleUtils.kt
@@ -26,7 +26,7 @@ import org.jetbrains.jps.model.module.JpsModule
 import org.jetbrains.jps.util.JpsPathUtil
 import org.jetbrains.kotlin.utils.KotlinJavascriptMetadataUtils
 import java.io.File
-import java.util.ArrayList
+import java.util.*
 
 object JpsJsModuleUtils {
     fun getLibraryFilesAndDependencies(target: ModuleBuildTarget): List<String> {
@@ -50,20 +50,31 @@ object JpsJsModuleUtils {
             override fun consume(module: JpsModule) {
                 if (module.moduleType != JpsJavaModuleType.INSTANCE) return
 
-                for (root in module.sourceRoots) {
-                    val isTestSource = root.rootType == JavaSourceRootType.TEST_SOURCE
+                var yieldProduction = module != target.module || target.isTests
+                var yieldTests = module != target.module
 
-                    if (module == target.module && isTestSource == target.isTests) continue
-
-                    if (!isTestSource || target.isTests) {
-                        val targetType = if (isTestSource) JavaModuleBuildTargetType.TEST else JavaModuleBuildTargetType.PRODUCTION
-                        val moduleBuildTarget = ModuleBuildTarget(module, targetType)
-                        val outputDir = KotlinBuilderModuleScriptGenerator.getOutputDirSafe(moduleBuildTarget)
-                        val metaInfoFile = getOutputMetaFile(outputDir, module.name)
-                        result.add(metaInfoFile.absolutePath)
+                module.sourceRoots.forEach {
+                    if (it.rootType == JavaSourceRootType.SOURCE) {
+                        if (yieldProduction) {
+                            addTarget(module, JavaModuleBuildTargetType.PRODUCTION)
+                            yieldProduction = false
+                        }
+                    }
+                    else {
+                        if (yieldTests) {
+                            addTarget(module, JavaModuleBuildTargetType.TEST)
+                            yieldTests = false
+                        }
                     }
                 }
             }
+
+            fun addTarget(module: JpsModule, targetType: JavaModuleBuildTargetType) {
+                val moduleBuildTarget = ModuleBuildTarget(module, targetType)
+                val outputDir = KotlinBuilderModuleScriptGenerator.getOutputDirSafe(moduleBuildTarget)
+                val metaInfoFile = getOutputMetaFile(outputDir, module.name)
+                result.add(metaInfoFile.absolutePath)
+            }
         })
     }
 
diff --git a/jps/jps-plugin/testData/general/KotlinJavaScriptProjectWithTwoSrcModuleDependency/kotlinProject.iml b/jps/jps-plugin/testData/general/KotlinJavaScriptProjectWithTwoSrcModuleDependency/kotlinProject.iml
new file mode 100644
index 00000000000..3776f58cd73
--- /dev/null
+++ b/jps/jps-plugin/testData/general/KotlinJavaScriptProjectWithTwoSrcModuleDependency/kotlinProject.iml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<module type="JAVA_MODULE" version="4">
+  <component name="NewModuleRootManager" inherit-compiler-output="true">
+    <exclude-output />
+    <content url="file://$MODULE_DIR$">
+      <sourceFolder url="file://$MODULE_DIR$/src" isTestSource="false" />
+    </content>
+    <orderEntry type="inheritedJdk" />
+    <orderEntry type="sourceFolder" forTests="false" />
+    <orderEntry type="module" module-name="srcs" />
+  </component>
+</module>
diff --git a/jps/jps-plugin/testData/general/KotlinJavaScriptProjectWithTwoSrcModuleDependency/kotlinProject.ipr b/jps/jps-plugin/testData/general/KotlinJavaScriptProjectWithTwoSrcModuleDependency/kotlinProject.ipr
new file mode 100644
index 00000000000..30c1d27da77
--- /dev/null
+++ b/jps/jps-plugin/testData/general/KotlinJavaScriptProjectWithTwoSrcModuleDependency/kotlinProject.ipr
@@ -0,0 +1,15 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="CompilerConfiguration">
+    <option name="DEFAULT_COMPILER" value="Javac" />
+  </component>
+  <component name="ProjectModuleManager">
+    <modules>
+      <module fileurl="file://$PROJECT_DIR$/srcs/srcs.iml" filepath="$PROJECT_DIR$/srcs/srcs.iml" />
+      <module fileurl="file://$PROJECT_DIR$/kotlinProject.iml" filepath="$PROJECT_DIR$/kotlinProject.iml" />
+    </modules>
+  </component>
+  <component name="ProjectRootManager" version="2" languageLevel="JDK_1_8" default="true" project-jdk-name="1.6" project-jdk-type="JavaSDK">
+    <output url="file://$PROJECT_DIR$/out" />
+  </component>
+</project>
diff --git a/jps/jps-plugin/testData/general/KotlinJavaScriptProjectWithTwoSrcModuleDependency/src/Main.kt b/jps/jps-plugin/testData/general/KotlinJavaScriptProjectWithTwoSrcModuleDependency/src/Main.kt
new file mode 100644
index 00000000000..4ec96fd4e15
--- /dev/null
+++ b/jps/jps-plugin/testData/general/KotlinJavaScriptProjectWithTwoSrcModuleDependency/src/Main.kt
@@ -0,0 +1,4 @@
+fun main() {
+    src()
+    src2()
+}
diff --git a/jps/jps-plugin/testData/general/KotlinJavaScriptProjectWithTwoSrcModuleDependency/srcs/src/Src.kt b/jps/jps-plugin/testData/general/KotlinJavaScriptProjectWithTwoSrcModuleDependency/srcs/src/Src.kt
new file mode 100644
index 00000000000..840b4c4a485
--- /dev/null
+++ b/jps/jps-plugin/testData/general/KotlinJavaScriptProjectWithTwoSrcModuleDependency/srcs/src/Src.kt
@@ -0,0 +1,3 @@
+fun src() {
+    src2()
+}
diff --git a/jps/jps-plugin/testData/general/KotlinJavaScriptProjectWithTwoSrcModuleDependency/srcs/src2/Src2.kt b/jps/jps-plugin/testData/general/KotlinJavaScriptProjectWithTwoSrcModuleDependency/srcs/src2/Src2.kt
new file mode 100644
index 00000000000..2e9a4c8ea07
--- /dev/null
+++ b/jps/jps-plugin/testData/general/KotlinJavaScriptProjectWithTwoSrcModuleDependency/srcs/src2/Src2.kt
@@ -0,0 +1,3 @@
+fun src2() {
+    src()
+}
diff --git a/jps/jps-plugin/testData/general/KotlinJavaScriptProjectWithTwoSrcModuleDependency/srcs/srcs.iml b/jps/jps-plugin/testData/general/KotlinJavaScriptProjectWithTwoSrcModuleDependency/srcs/srcs.iml
new file mode 100644
index 00000000000..cdfacea2bb6
--- /dev/null
+++ b/jps/jps-plugin/testData/general/KotlinJavaScriptProjectWithTwoSrcModuleDependency/srcs/srcs.iml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<module type="JAVA_MODULE" version="4">
+  <component name="NewModuleRootManager" inherit-compiler-output="true">
+    <exclude-output />
+    <content url="file://$MODULE_DIR$">
+      <sourceFolder url="file://$MODULE_DIR$/src" isTestSource="false" />
+      <sourceFolder url="file://$MODULE_DIR$/src2" isTestSource="false" />
+    </content>
+    <orderEntry type="inheritedJdk" />
+    <orderEntry type="sourceFolder" forTests="false" />
+  </component>
+</module>