diff --git a/jps/jps-plugin/src/org/jetbrains/kotlin/jps/build/FSOperationsHelper.kt b/jps/jps-plugin/src/org/jetbrains/kotlin/jps/build/FSOperationsHelper.kt
index 51ff82208df..d38aebdc087 100644
--- a/jps/jps-plugin/src/org/jetbrains/kotlin/jps/build/FSOperationsHelper.kt
+++ b/jps/jps-plugin/src/org/jetbrains/kotlin/jps/build/FSOperationsHelper.kt
@@ -21,8 +21,11 @@ import com.intellij.util.containers.ContainerUtil
 import org.jetbrains.jps.ModuleChunk
 import org.jetbrains.jps.builders.BuildRootDescriptor
 import org.jetbrains.jps.builders.BuildTarget
+import org.jetbrains.jps.builders.FileProcessor
+import org.jetbrains.jps.builders.impl.DirtyFilesHolderBase
 import org.jetbrains.jps.builders.java.JavaSourceRootDescriptor
 import org.jetbrains.jps.builders.java.dependencyView.Mappings
+import org.jetbrains.jps.incremental.BuildOperations
 import org.jetbrains.jps.incremental.CompileContext
 import org.jetbrains.jps.incremental.FSOperations
 import org.jetbrains.jps.incremental.ModuleBuildTarget
@@ -76,19 +79,33 @@ class FSOperationsHelper(
     /**
      * Marks given [files] as dirty for current round and given [target] of [chunk].
      */
-    fun markFilesForCurrentRound(target: ModuleBuildTarget, files: Iterable<File>) {
+    fun markFilesForCurrentRound(target: ModuleBuildTarget, files: Collection<File>) {
         require(target in chunk.targets)
 
         val targetDirtyFiles = dirtyFilesHolder.byTarget.getValue(target)
+        val dirtyFileToRoot = HashMap<File, JavaSourceRootDescriptor>()
         files.forEach { file ->
             val root = compileContext.projectDescriptor.buildRootIndex
                 .findAllParentDescriptors<BuildRootDescriptor>(file, compileContext)
                 .single { sourceRoot -> sourceRoot.target == target }
 
             targetDirtyFiles._markDirty(file, root as JavaSourceRootDescriptor)
+            dirtyFileToRoot[file] = root
         }
 
         markFilesImpl(files, currentRound = true) { it.exists() }
+        cleanOutputsForNewDirtyFilesInCurrentRound(target, dirtyFileToRoot)
+    }
+
+    private fun cleanOutputsForNewDirtyFilesInCurrentRound(target: ModuleBuildTarget, dirtyFiles: Map<File, JavaSourceRootDescriptor>) {
+        val dirtyFilesHolder = object : DirtyFilesHolderBase<JavaSourceRootDescriptor, ModuleBuildTarget>(compileContext) {
+            override fun processDirtyFiles(processor: FileProcessor<JavaSourceRootDescriptor, ModuleBuildTarget>) {
+                dirtyFiles.forEach { (file, root) -> processor.apply(target, file, root) }
+            }
+
+            override fun hasDirtyFiles(): Boolean = dirtyFiles.isNotEmpty()
+        }
+        BuildOperations.cleanOutputsCorrespondingToChangedFiles(compileContext, dirtyFilesHolder)
     }
 
     fun markFiles(files: Iterable<File>) {
diff --git a/jps/jps-plugin/testData/incremental/multiModule/multiplatform/custom/buildError/build.log b/jps/jps-plugin/testData/incremental/multiModule/multiplatform/custom/buildError/build.log
index 186234f80fb..104fae8b14b 100644
--- a/jps/jps-plugin/testData/incremental/multiModule/multiplatform/custom/buildError/build.log
+++ b/jps/jps-plugin/testData/incremental/multiModule/multiplatform/custom/buildError/build.log
@@ -31,6 +31,9 @@ Building pJvm
 Cleaning output files:
   out/production/pJvm/META-INF/pJvm.kotlin_module
 End of files
+Cleaning output files:
+  out/production/pJvm/FJvmKt.class
+End of files
 Compiling files:
   c/src/f.kt
   pJvm/src/fJvm.kt
diff --git a/jps/jps-plugin/testData/incremental/multiModule/multiplatform/custom/buildError2Levels/build.log b/jps/jps-plugin/testData/incremental/multiModule/multiplatform/custom/buildError2Levels/build.log
index 2f051fcd555..75f18a0efbb 100644
--- a/jps/jps-plugin/testData/incremental/multiModule/multiplatform/custom/buildError2Levels/build.log
+++ b/jps/jps-plugin/testData/incremental/multiModule/multiplatform/custom/buildError2Levels/build.log
@@ -35,6 +35,9 @@ Building pJvm
 Cleaning output files:
   out/production/pJvm/META-INF/pJvm.kotlin_module
 End of files
+Cleaning output files:
+  out/production/pJvm/FgKt.class
+End of files
 Compiling files:
   c/src/f.kt
   c/src/g.kt
diff --git a/jps/jps-plugin/testData/incremental/multiModule/multiplatform/custom/complementaryFiles/build.log b/jps/jps-plugin/testData/incremental/multiModule/multiplatform/custom/complementaryFiles/build.log
index 55fe16560c0..d50092a5710 100644
--- a/jps/jps-plugin/testData/incremental/multiModule/multiplatform/custom/complementaryFiles/build.log
+++ b/jps/jps-plugin/testData/incremental/multiModule/multiplatform/custom/complementaryFiles/build.log
@@ -6,6 +6,10 @@ Cleaning output files:
   out/production/pJvm/FJvmKt.class
   out/production/pJvm/META-INF/pJvm.kotlin_module
 End of files
+Cleaning output files:
+  out/production/pJvm/FKt.class
+  out/production/pJvm/SharedImmutable.class
+End of files
 Compiling files:
   c/src/f.kt
   pJvm/src/fJvm.kt