[Test] Replace remaining KOTLIN_CONFIGURATION_FLAGS directives with specific ones

compiler/testData/codegen/box/parametersMetadata/innerClass.kt

@@ -2,7 +2,7 @@
 // TARGET_BACKEND: JVM
 // WITH_RUNTIME
 // FULL_JDK
-// KOTLIN_CONFIGURATION_FLAGS: +JVM.PARAMETERS_METADATA
+// PARAMETERS_METADATA
 
 class A {
     inner class B
@@ -17,4 +17,4 @@ fun box(): String {
     if (!parameters[0].isImplicit() || parameters[0].isSynthetic()) return "wrong outer flags: ${parameters[0].modifiers}"
 
     return "OK"
-}
+}