[K/N][build] Fix KT-56495: improve version manifest merge

Add missing input property to stdlib build task. This task should
consider kotlin/build version change.
Add a version check during the stdlib target task build. This check
should be done here instead of the final merge.

Fixes ^KT-56495


Merge-request: KT-MR-12906
Merged-by: Pavel Punegov <Pavel.Punegov@jetbrains.com>

kotlin-native/runtime/build.gradle.kts

@@ -9,6 +9,7 @@ import org.jetbrains.kotlin.gradle.plugin.konan.tasks.KonanCacheTask
 import org.jetbrains.kotlin.konan.properties.loadProperties
 import org.jetbrains.kotlin.konan.properties.saveProperties
 import org.jetbrains.kotlin.konan.target.*
+import org.jetbrains.kotlin.library.KLIB_PROPERTY_COMPILER_VERSION
 import org.jetbrains.kotlin.library.KLIB_PROPERTY_NATIVE_TARGETS
 import org.jetbrains.kotlin.konan.file.File as KFile
 import org.jetbrains.kotlin.konan.target.Architecture as TargetArchitecture
@@ -18,6 +19,8 @@ val distDir: File by project
 val konanHome: String by extra(distDir.absolutePath)
 extra["org.jetbrains.kotlin.native.home"] = konanHome
 
+val kotlinVersion: String by rootProject.extra
+
 plugins {
     id("compile-to-bitcode")
     id("runtime-testing")
@@ -600,6 +603,10 @@ targetList.forEach { targetName ->
                 with(KFile(destinationDir.resolve("default/manifest").absolutePath)) {
                     val props = loadProperties()
                     props[KLIB_PROPERTY_NATIVE_TARGETS] = targetName
+                    val version = props[KLIB_PROPERTY_COMPILER_VERSION]
+                    check(version == kotlinVersion) {
+                        "Manifest file ($this) processing: $version was found while $kotlinVersion was expected"
+                    }
                     saveProperties(props)
                 }
             }