diff --git a/idea/src/org/jetbrains/kotlin/idea/refactoring/move/moveTopLevelDeclarations/ui/MoveFilesOrDirectoriesDialogWithKotlinOptions.kt b/idea/src/org/jetbrains/kotlin/idea/refactoring/move/moveTopLevelDeclarations/ui/MoveFilesOrDirectoriesDialogWithKotlinOptions.kt
index 8999fd30902..5bd968826e1 100644
--- a/idea/src/org/jetbrains/kotlin/idea/refactoring/move/moveTopLevelDeclarations/ui/MoveFilesOrDirectoriesDialogWithKotlinOptions.kt
+++ b/idea/src/org/jetbrains/kotlin/idea/refactoring/move/moveTopLevelDeclarations/ui/MoveFilesOrDirectoriesDialogWithKotlinOptions.kt
@@ -22,6 +22,7 @@ import com.intellij.psi.PsiElement
 import com.intellij.refactoring.move.moveFilesOrDirectories.MoveFilesOrDirectoriesDialog
 import com.intellij.ui.NonFocusableCheckBox
 import com.intellij.util.ui.UIUtil
+import org.jetbrains.kotlin.idea.core.refactoring.isInJavaSourceRoot
 import org.jetbrains.kotlin.psi.JetFile
 import org.jetbrains.kotlin.psi.psiUtil.packageMatchesDirectory
 import java.awt.GridBagConstraints
@@ -70,7 +71,7 @@ public class MoveFilesOrDirectoriesDialogWithKotlinOptions(
         super.setData(psiElements, initialTargetDirectory, helpID)
 
         with (cbUpdatePackageDirective!!) {
-            val jetFiles = psiElements.filterIsInstance<JetFile>()
+            val jetFiles = psiElements.filterIsInstance<JetFile>().filter { it.isInJavaSourceRoot() }
             if (jetFiles.isEmpty()) {
                 getParent().remove(cbUpdatePackageDirective)
                 return
diff --git a/idea/src/org/jetbrains/kotlin/idea/refactoring/move/moveUtils.kt b/idea/src/org/jetbrains/kotlin/idea/refactoring/move/moveUtils.kt
index 9d108e8b931..159ad1f1a57 100644
--- a/idea/src/org/jetbrains/kotlin/idea/refactoring/move/moveUtils.kt
+++ b/idea/src/org/jetbrains/kotlin/idea/refactoring/move/moveUtils.kt
@@ -50,6 +50,7 @@ import org.jetbrains.kotlin.idea.JetFileType
 import org.jetbrains.kotlin.idea.caches.resolve.resolveToDescriptor
 import org.jetbrains.kotlin.idea.codeInsight.DescriptorToSourceUtilsIde
 import org.jetbrains.kotlin.idea.codeInsight.JetFileReferencesResolver
+import org.jetbrains.kotlin.idea.core.refactoring.isInJavaSourceRoot
 import org.jetbrains.kotlin.idea.refactoring.fqName.isImported
 import org.jetbrains.kotlin.idea.refactoring.move.moveTopLevelDeclarations.ui.MoveFilesOrDirectoriesDialogWithKotlinOptions
 import org.jetbrains.kotlin.idea.references.JetReference
@@ -315,7 +316,9 @@ public fun moveFilesOrDirectories(
 
                 elementsToMove.forEach {
                     MoveFilesOrDirectoriesUtil.checkMove(it, selectedDir)
-                    (it as? JetFile)?.let { it.updatePackageDirective = updatePackageDirective }
+                    if (it is JetFile && it.isInJavaSourceRoot()) {
+                        it.updatePackageDirective = updatePackageDirective
+                    }
                 }
 
                 if (elementsToMove.isNotEmpty()) {