Kapt3: Write stub class files with metadata (needed for incremental compilation)

compiler/testData/codegen/light-analysis/objects/nestedDerivedClassCallsProtectedFromCompanion.txt

@@ -1,3 +1,4 @@
+@kotlin.Metadata
 public class A {
     public final static field Companion: A.Companion
     inner class A/B
@@ -5,18 +6,21 @@ public class A {
     public method <init>(): void
 }
 
+@kotlin.Metadata
 public final static class A/B {
     inner class A/B
     public method <init>(): void
     public final @org.jetbrains.annotations.NotNull method bar(): java.lang.String
 }
 
+@kotlin.Metadata
 public final static class A/Companion {
     inner class A/Companion
     private method <init>(): void
     protected final @org.jetbrains.annotations.NotNull method foo(): java.lang.String
 }
 
+@kotlin.Metadata
 public final class NestedDerivedClassCallsProtectedFromCompanionKt {
     public final static @org.jetbrains.annotations.NotNull method box(): java.lang.String
 }