diff --git a/libraries/tools/kotlin-gradle-plugin/src/main/kotlin/org/jetbrains/kotlin/gradle/targets/native/KotlinNativeCompilation.kt b/libraries/tools/kotlin-gradle-plugin/src/main/kotlin/org/jetbrains/kotlin/gradle/targets/native/KotlinNativeCompilation.kt
index 0a76d1d4e7e..6cc1156c6b2 100644
--- a/libraries/tools/kotlin-gradle-plugin/src/main/kotlin/org/jetbrains/kotlin/gradle/targets/native/KotlinNativeCompilation.kt
+++ b/libraries/tools/kotlin-gradle-plugin/src/main/kotlin/org/jetbrains/kotlin/gradle/targets/native/KotlinNativeCompilation.kt
@@ -18,6 +18,7 @@ import org.jetbrains.kotlin.gradle.plugin.KotlinCompilation
 import org.jetbrains.kotlin.gradle.plugin.KotlinCompilationWithResources
 import org.jetbrains.kotlin.gradle.plugin.KotlinSourceSet
 import org.jetbrains.kotlin.gradle.tasks.KotlinNativeCompile
+import org.jetbrains.kotlin.gradle.utils.SingleWarningPerBuild
 import org.jetbrains.kotlin.gradle.utils.lowerCamelCaseName
 import java.util.concurrent.Callable
 
@@ -52,9 +53,30 @@ class KotlinNativeCompilation(
         }
 
     // Native-specific DSL.
-    var extraOpts = mutableListOf<String>()
+    private fun showDeprecationWarning() = SingleWarningPerBuild.show(
+        project,
+        "The compilation.extraOpts method used in this build is deprecated. Use compilation.kotlinOptions.freeCompilerArgs instead."
+    )
 
+    internal var extraOptsNoWarn: MutableList<String> = mutableListOf()
+
+    @Deprecated("Use kotlinOptions.freeCompilerArgs instead", ReplaceWith("kotlinOptions.freeCompilerArgs"))
+    var extraOpts: MutableList<String>
+        get() {
+            showDeprecationWarning()
+            return extraOptsNoWarn
+        }
+        set(value) {
+            showDeprecationWarning()
+            extraOptsNoWarn = value
+        }
+
+    @Deprecated("Use kotlinOptions.freeCompilerArgs instead", ReplaceWith("kotlinOptions.freeCompilerArgs"))
+    @Suppress("Deprecation")
     fun extraOpts(vararg values: Any) = extraOpts(values.toList())
+
+    @Deprecated("Use kotlinOptions.freeCompilerArgs instead", ReplaceWith("kotlinOptions.freeCompilerArgs"))
+    @Suppress("Deprecation")
     fun extraOpts(values: List<Any>) {
         extraOpts.addAll(values.map { it.toString() })
     }
diff --git a/libraries/tools/kotlin-gradle-plugin/src/main/kotlin/org/jetbrains/kotlin/gradle/targets/native/tasks/KotlinNativeTasks.kt b/libraries/tools/kotlin-gradle-plugin/src/main/kotlin/org/jetbrains/kotlin/gradle/targets/native/tasks/KotlinNativeTasks.kt
index 8eec2fd4e97..9ef177c1b91 100644
--- a/libraries/tools/kotlin-gradle-plugin/src/main/kotlin/org/jetbrains/kotlin/gradle/targets/native/tasks/KotlinNativeTasks.kt
+++ b/libraries/tools/kotlin-gradle-plugin/src/main/kotlin/org/jetbrains/kotlin/gradle/targets/native/tasks/KotlinNativeTasks.kt
@@ -131,9 +131,8 @@ abstract class AbstractKotlinNativeCompile : AbstractCompile(), KotlinCompile<Ko
     val target: String
         @Input get() = compilation.target.konanTarget.name
 
-    // TODO: rework.
     val additionalCompilerOptions: Collection<String>
-        @Input get() = compilation.extraOpts
+        @Input get() = kotlinOptions.freeCompilerArgs
 
     // region Language settings imported from a SourceSet.
     val languageSettings: LanguageSettingsBuilder?
@@ -169,12 +168,12 @@ abstract class AbstractKotlinNativeCompile : AbstractCompile(), KotlinCompile<Ko
         override var suppressWarnings: Boolean = false
         override var verbose: Boolean = false
 
-        // TODO: deprecate extraOptions because now we have a uniform way to access these parameters.
+        // TODO: Drop extraOpts in 1.3.70 and create a list here directly
         // Delegate for compilations's extra options.
         override var freeCompilerArgs: List<String>
-            get() = compilation.extraOpts
+            get() = compilation.extraOptsNoWarn
             set(value) {
-                compilation.extraOpts = value.toMutableList()
+                compilation.extraOptsNoWarn = value.toMutableList()
             }
     }