diff --git a/libraries/tools/kotlin-gradle-plugin/src/main/kotlin/org/jetbrains/kotlin/gradle/tasks/Tasks.kt b/libraries/tools/kotlin-gradle-plugin/src/main/kotlin/org/jetbrains/kotlin/gradle/tasks/Tasks.kt
index eb9b789a7f7..a9fd50f1c6c 100644
--- a/libraries/tools/kotlin-gradle-plugin/src/main/kotlin/org/jetbrains/kotlin/gradle/tasks/Tasks.kt
+++ b/libraries/tools/kotlin-gradle-plugin/src/main/kotlin/org/jetbrains/kotlin/gradle/tasks/Tasks.kt
@@ -590,7 +590,7 @@ open class Kotlin2JsCompile : AbstractKotlinCompile<K2JSCompilerArguments>(), Ko
         }
 
         val dependencies = compileClasspath
-            .filter(libraryFilter)
+            .filter { it.exists() && libraryFilter(it) }
             .map { it.canonicalPath }
 
         args.libraries = (dependencies + friendDependencies).distinct().let {