diff --git a/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/resources/testProject/mppDeprecatedProperties/settings.gradle.kts b/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/resources/testProject/mppDeprecatedProperties/settings.gradle.kts
new file mode 100644
index 00000000000..39022621b5c
--- /dev/null
+++ b/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/resources/testProject/mppDeprecatedProperties/settings.gradle.kts
@@ -0,0 +1 @@
+include(":subproject")
\ No newline at end of file
diff --git a/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/resources/testProject/mppDeprecatedProperties/subproject/build.gradle.kts b/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/resources/testProject/mppDeprecatedProperties/subproject/build.gradle.kts
new file mode 100644
index 00000000000..84ed38adf19
--- /dev/null
+++ b/libraries/tools/kotlin-gradle-plugin-integration-tests/src/test/resources/testProject/mppDeprecatedProperties/subproject/build.gradle.kts
@@ -0,0 +1,7 @@
+plugins {
+    kotlin("multiplatform")
+}
+
+kotlin {
+    jvm()
+}
diff --git a/libraries/tools/kotlin-gradle-plugin/src/common/kotlin/org/jetbrains/kotlin/gradle/plugin/mpp/internal/deprecationDiagnostics.kt b/libraries/tools/kotlin-gradle-plugin/src/common/kotlin/org/jetbrains/kotlin/gradle/plugin/mpp/internal/deprecationDiagnostics.kt
index c4a91c8d147..39854704221 100644
--- a/libraries/tools/kotlin-gradle-plugin/src/common/kotlin/org/jetbrains/kotlin/gradle/plugin/mpp/internal/deprecationDiagnostics.kt
+++ b/libraries/tools/kotlin-gradle-plugin/src/common/kotlin/org/jetbrains/kotlin/gradle/plugin/mpp/internal/deprecationDiagnostics.kt
@@ -38,6 +38,8 @@ internal fun checkAndReportDeprecatedNativeTargets(project: Project) {
  * Warnings have to be reported only for successfully evaluated projects without errors.
  */
 internal fun checkAndReportDeprecatedMppProperties(project: Project) {
+    if (project !== project.rootProject) return
+
     val projectProperties = project.kotlinPropertiesProvider
     if (projectProperties.ignoreHmppDeprecationWarnings == true) return