[Gradle] Deprecate scoped metadata dependencies

Scoped metadata dependencies are not needed since
metadata dependencies are used only for metadata compilation. Metadata
is not consumed at runtime. Therefore, scoped metadata dependencies
are not required.

^KT-55312

libraries/tools/kotlin-gradle-plugin-api/src/common/kotlin/org/jetbrains/kotlin/gradle/plugin/KotlinSourceSet.kt

@@ -25,19 +25,18 @@ interface KotlinSourceSet : Named, HasKotlinDependencies {
     fun dependsOn(other: KotlinSourceSet)
     val dependsOn: Set<KotlinSourceSet>
 
+    val metadataLibrariesConfigurationName: String
+    @Deprecated(message = "KT-55312")
     val apiMetadataConfigurationName: String
+    @Deprecated(message = "KT-55312")
     val implementationMetadataConfigurationName: String
+    @Deprecated(message = "KT-55312")
     val compileOnlyMetadataConfigurationName: String
     @Deprecated(message = "KT-55230: RuntimeOnly scope is not supported for metadata dependency transformation")
     val runtimeOnlyMetadataConfigurationName: String
 
     override val relatedConfigurationNames: List<String>
-        get() = super.relatedConfigurationNames +
-                listOf(
-                    apiMetadataConfigurationName,
-                    implementationMetadataConfigurationName,
-                    compileOnlyMetadataConfigurationName,
-                )
+        get() = super.relatedConfigurationNames + metadataLibrariesConfigurationName
 
     companion object {
         const val COMMON_MAIN_SOURCE_SET_NAME = "commonMain"