[Build] Fix configuration cache issues (part 1)

* Make `clean` task compatible with configuration cache
* Make Java compile instrumentation compatible with configuration cache
* Make settings.gradle compatible with configuration cache
* Initial work on making IntelliJInstrumentCodeTask compatible with configuration cache
* Make writeStdlibVersion task compatible with configuration cache
* Copy some properties to not capture it's owning object into lambda to support configuration cache

Relates to #KT-44611

dependencies/tools-jar-api/build.gradle.kts

@@ -16,17 +16,18 @@ val runtimeElements by configurations.creating {
 }
 
 val JDK_18: String by rootProject.extra
-val toolsJarFile = toolsJarFile(jdkHome = File(JDK_18)) ?: error("Couldn't find tools.jar in $JDK_18")
-val usedInternalApiPackages = listOf(
-    "com/sun/tools/javac" // Used in KAPT
-)
 
 val toolsJarStubs by tasks.registering {
+    val toolsJarFile = toolsJarFile(jdkHome = File(JDK_18)) ?: error("Couldn't find tools.jar in $JDK_18")
     inputs.file(toolsJarFile)
 
     val outDir = buildDir.resolve(name)
     outputs.dir(outDir)
 
+    val usedInternalApiPackages = listOf(
+        "com/sun/tools/javac" // Used in KAPT
+    )
+
     doLast {
         outDir.deleteRecursively()
         val zipFile = ZipFile(toolsJarFile)