Avoid deserializing .kotlin_module as class proto

#KT-20184 fixed

Original commit: 18261838b6

jps/jps-plugin/jps-tests/test/org/jetbrains/kotlin/jps/build/IncrementalJpsTestGenerated.java

@@ -1156,6 +1156,12 @@ public class IncrementalJpsTestGenerated extends AbstractIncrementalJpsTest {
                 KotlinTestUtils.assertAllTestsPresentByMetadata(this.getClass(), new File("jps-plugin/testData/incremental/withJava/other"), Pattern.compile("^([^\\.]+)$"), TargetBackend.ANY, true);
             }
 
+            @TestMetadata("allKotlinFilesRemovedThenNewAdded")
+            public void testAllKotlinFilesRemovedThenNewAdded() throws Exception {
+                String fileName = KotlinTestUtils.navigationMetadata("jps-plugin/testData/incremental/withJava/other/allKotlinFilesRemovedThenNewAdded/");
+                doTest(fileName);
+            }
+
             @TestMetadata("classToPackageFacade")
             public void testClassToPackageFacade() throws Exception {
                 String fileName = KotlinTestUtils.navigationMetadata("jps-plugin/testData/incremental/withJava/other/classToPackageFacade/");

jps/jps-plugin/testData/incremental/withJava/other/allKotlinFilesRemovedThenNewAdded/A.java

@@ -0,0 +1 @@
+public class A {}

jps/jps-plugin/testData/incremental/withJava/other/allKotlinFilesRemovedThenNewAdded/B.kt.new.2

@@ -0,0 +1 @@
+class B

jps/jps-plugin/testData/incremental/withJava/other/allKotlinFilesRemovedThenNewAdded/build.log

@@ -0,0 +1,18 @@
+================ Step #1 =================
+
+Cleaning output files:
+  out/production/module/META-INF/module.kotlin_module
+  out/production/module/MainKt.class
+End of files
+Compiling files:
+End of files
+Exit code: OK
+------------------------------------------
+
+================ Step #2 =================
+
+Compiling files:
+  src/B.kt
+End of files
+Exit code: OK
+------------------------------------------

jps/jps-plugin/testData/incremental/withJava/other/allKotlinFilesRemovedThenNewAdded/main.kt

@@ -0,0 +1,2 @@
+fun main(args: Array<String>) {
+}