[Gradle, JS] Fix cli tests for ir

KT-60495

compiler/testData/cli/js/sourceMapRootMissing.args

@@ -2,10 +2,20 @@ $TESTDATA_DIR$/sourceMapRoot/foo/file1.kt
 $TESTDATA_DIR$/sourceMapRoot/bar/file2.kt
 $TESTDATA_DIR$/sourceMapRoot/bar/baz/file3.kt
 $TESTDATA_DIR$/sourceMapRoot/foo/baz/file4.kt
+-Xir-produce-klib-dir
+-Xir-only
+-libraries
+$STDLIB_JS$
+-ir-output-dir
+$TEMP_DIR$/klib
+-ir-output-name
+out
+---
 -Xir-produce-js
 -Xir-only
 -libraries
 $STDLIB_JS$
+-Xinclude=$TEMP_DIR$/klib
 -source-map
 -source-map-base-dirs
 $TESTDATA_DIR$/sourceMapRoot/foo
@@ -14,3 +24,4 @@ $TEMP_DIR$
 -ir-output-name
 out
 
+