Avoid deserializing .kotlin_module as class proto

#KT-20184 fixed

jps-plugin/testData/incremental/withJava/other/allKotlinFilesRemovedThenNewAdded/A.java

@@ -0,0 +1 @@
+public class A {}

jps-plugin/testData/incremental/withJava/other/allKotlinFilesRemovedThenNewAdded/B.kt.new.2

@@ -0,0 +1 @@
+class B

jps-plugin/testData/incremental/withJava/other/allKotlinFilesRemovedThenNewAdded/build.log

@@ -0,0 +1,18 @@
+================ Step #1 =================
+
+Cleaning output files:
+  out/production/module/META-INF/module.kotlin_module
+  out/production/module/MainKt.class
+End of files
+Compiling files:
+End of files
+Exit code: OK
+------------------------------------------
+
+================ Step #2 =================
+
+Compiling files:
+  src/B.kt
+End of files
+Exit code: OK
+------------------------------------------

jps-plugin/testData/incremental/withJava/other/allKotlinFilesRemovedThenNewAdded/main.kt

@@ -0,0 +1,2 @@
+fun main(args: Array<String>) {
+}