diff --git a/libraries/tools/kotlin-gradle-plugin/src/main/kotlin/org/jetbrains/kotlin/gradle/scripting/internal/ScriptingGradleSubplugin.kt b/libraries/tools/kotlin-gradle-plugin/src/main/kotlin/org/jetbrains/kotlin/gradle/scripting/internal/ScriptingGradleSubplugin.kt
index 5154dd067f6..79948e58558 100644
--- a/libraries/tools/kotlin-gradle-plugin/src/main/kotlin/org/jetbrains/kotlin/gradle/scripting/internal/ScriptingGradleSubplugin.kt
+++ b/libraries/tools/kotlin-gradle-plugin/src/main/kotlin/org/jetbrains/kotlin/gradle/scripting/internal/ScriptingGradleSubplugin.kt
@@ -25,6 +25,7 @@ import org.jetbrains.kotlin.gradle.dsl.KotlinCommonOptions
 import org.jetbrains.kotlin.gradle.dsl.multiplatformExtensionOrNull
 import org.jetbrains.kotlin.gradle.internal.KaptGenerateStubsTask
 import org.jetbrains.kotlin.gradle.plugin.*
+import org.jetbrains.kotlin.gradle.plugin.mpp.AbstractKotlinNativeCompilation
 import org.jetbrains.kotlin.gradle.scripting.ScriptingExtension
 import org.jetbrains.kotlin.gradle.tasks.KotlinCompile
 import org.jetbrains.kotlin.scripting.compiler.plugin.impl.reporter
@@ -223,7 +224,7 @@ class ScriptingKotlinGradleSubplugin :
         val LEGACY_SCRIPT_RESOLVER_ENVIRONMENT_OPTION = "script-resolver-environment"
     }
 
-    override fun isApplicable(kotlinCompilation: KotlinCompilation<*>): Boolean = true
+    override fun isApplicable(kotlinCompilation: KotlinCompilation<*>): Boolean = kotlinCompilation !is AbstractKotlinNativeCompilation
 
     override fun applyToCompilation(
         kotlinCompilation: KotlinCompilation<*>