test list

python/data/tests-list/gmp/README.md

@@ -0,0 +1,23 @@
+## Running `gmp` bugs
+
+After running the container you need to follow the following
+steps to prepare `SOSRepair` for running:
+
+1. Copy `makeout`, `compile.sh`, `test.sh` and `tests-list` to
+the container's `/experiment/`.
+2. Copy `settings.py` to the container's `/opt/sosrepair/sosrepair`.
+3. In the container, reconfigure the project with coverage flags:
+```
+cd /experiment/src
+./configure "CFLAGS=-fprofile-arcs -ftest-coverage" "CXXFLAGS=-fprofile-arcs -ftest-coverage" "LDFLAGS=-lgcov --coverage"
+make clean
+make
+```
+4. Run `/opt/sosrepair/prepare/setup.sh`.
+5. Set proper permissions by running `sudo chmod -R 777 /opt/sosrepair/sosrepair`.
+6. Setup environment variables:
+```
+export PYTHONPATH="/opt/sosrepair/bindings:${PYTHONPATH}"
+export CPATH=":/opt/sosrepair/include"
+export PATH="/opt/sosrepair/bin:$PATH"
+```

python/data/tests-list/gmp/compile.sh

@@ -0,0 +1,8 @@
+#!/bin/bash
+DIR=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
+
+cd $DIR/src
+#make clean
+(make && exit 0)|| exit 1
+
+

python/data/tests-list/gmp/copy.sh

@@ -0,0 +1,10 @@
+#!/bin/bash
+
+
+CONTAINER=$1
+BUG=$2
+
+docker cp compile.sh $CONTAINER:/experiment/
+docker cp $BUG/test.sh $CONTAINER:/experiment/
+docker cp $BUG/tests-list.txt $CONTAINER:/experiment/
+docker cp $BUG/settings.py $CONTAINER:/opt/sosrepair/sosrepair/

python/data/tests-list/gmp/gmp-bug-13420-13421/notes.md

@@ -0,0 +1,3 @@
+For running SOS+ on this bug, we manually helped in finding
+correct set of live variables. Number of live variables are
+very high. So we limit that to `b2p`, `n`, `rp`, and `tp`.

python/data/tests-list/gmp/gmp-bug-13420-13421/settings.py

@@ -0,0 +1,83 @@
+"""
+This file includes all the settings that could be modified for running SearchRepair/SOSRepair
+
+* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
+* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
+ DB
+* Z3_COMMAND: The z3 command on this machine.
+* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
+* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
+* DATABASE: Information about the database.
+* LOGGING: Settings for logging.
+* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
+* VALID_TYPES: The variable types that are right now supported by SR.
+------ Settings related to file under repair -------
+* TESTS_LIST: The path to a list of the tests that could be run on the file
+* TEST_SCRIPT: The path to a script that will run the test
+* COMPILE_SCRIPT: The path to a script that will compile the code
+* FAULTY_CODE: The path to the faulty code (a C file)
+* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
+* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
+automatically)
+* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
+* SOSREPAIR: If set to False it will only run SearchRepair features
+* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
+* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
+"""
+__author__ = 'Afsoon Afzal'
+
+import logging
+
+
+LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
+
+GENERATE_DB_PATH = '/experiment/src'
+
+Z3_COMMAND = '/opt/sosrepair/bin/z3'
+
+LARGEST_SNIPPET = 7
+SMALLEST_SNIPPET = 3
+
+DATABASE = {
+    'db_name': 'testdocker',
+    'user': 'docker',
+    'password': '1234'
+}
+
+LOGGING = {
+    'filename': 'logs/repair.log',
+    'level': logging.DEBUG
+}
+
+logging.basicConfig(**LOGGING)
+
+MAX_SUSPICIOUS_LINES = 10
+
+VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
+
+TESTS_LIST = "/experiment/tests-list.txt"
+TEST_SCRIPT = "/experiment/test.sh"
+TEST_SCRIPT_TYPE = "/bin/bash"
+COMPILE_SCRIPT = "/experiment/compile.sh"
+FAULTY_CODE = "/experiment/src/mpn/generic/powm.c"
+
+
+COMPILE_EXTRA_ARGS = [
+                    "-I/experiment/src",
+                    "-I/usr/include",
+]
+
+MAKE_OUTPUT = "/experiment/makeout"
+
+METHOD_RANGE = (144, 483)
+# IF SOS+
+# METHOD_RANGE = (212, 213)
+
+SOSREPAIR = True
+
+NUMBER_OF_TIMES_RERUNNING_TESTS = 1
+EXCLUDE_SCANF = False
+
+BULK_RUN_PATH = ""
+
+GCOV_OBJECTS = "/experiment/src/mpn/.libs/"

python/data/tests-list/gmp/gmp-bug-13420-13421/test.sh

@@ -0,0 +1,165 @@
+#!/bin/bash
+run_abbrev=False
+bugrev=13420
+time_limit=25
+dir=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
+run_test()
+{
+    cd $dir/src
+    ../gmp-run-tests.pl $1 $run_abbrev
+    if [ $? = 0 ] ; then
+        echo ""
+        echo "PASS"
+    else
+        echo ""
+        echo "FAIL"
+    fi
+    popd > /dev/null
+    return 0
+}
+case $1 in
+    p1) run_test 1 && exit 0 ;; 
+    p2) run_test 2 && exit 0 ;; 
+    p3) run_test 3 && exit 0 ;; 
+    p4) run_test 4 && exit 0 ;; 
+    p5) run_test 5 && exit 0 ;; 
+    p6) run_test 6 && exit 0 ;; 
+    p7) run_test 7 && exit 0 ;; 
+    p8) run_test 8 && exit 0 ;; 
+    p9) run_test 9 && exit 0 ;; 
+    p10) run_test 10 && exit 0 ;; 
+    p11) run_test 11 && exit 0 ;; 
+    p12) run_test 12 && exit 0 ;; 
+    p13) run_test 13 && exit 0 ;; 
+    p14) run_test 14 && exit 0 ;; 
+    p15) run_test 15 && exit 0 ;; 
+    p16) run_test 16 && exit 0 ;; 
+    p17) run_test 17 && exit 0 ;; 
+    p18) run_test 18 && exit 0 ;; 
+    p19) run_test 19 && exit 0 ;; 
+    p20) run_test 20 && exit 0 ;; 
+    p21) run_test 21 && exit 0 ;; 
+    p22) run_test 22 && exit 0 ;; 
+    p23) run_test 23 && exit 0 ;; 
+    p24) run_test 24 && exit 0 ;; 
+    p25) run_test 25 && exit 0 ;; 
+    p26) run_test 26 && exit 0 ;; 
+    p27) run_test 27 && exit 0 ;; 
+    p28) run_test 28 && exit 0 ;; 
+    p29) run_test 29 && exit 0 ;; 
+    p30) run_test 31 && exit 0 ;; 
+    p31) run_test 32 && exit 0 ;; 
+    p32) run_test 33 && exit 0 ;; 
+    p33) run_test 35 && exit 0 ;; 
+    p34) run_test 36 && exit 0 ;; 
+    p35) run_test 37 && exit 0 ;; 
+    p36) run_test 39 && exit 0 ;; 
+    p37) run_test 40 && exit 0 ;; 
+    p38) run_test 41 && exit 0 ;; 
+    p39) run_test 42 && exit 0 ;; 
+    p40) run_test 43 && exit 0 ;; 
+    p41) run_test 44 && exit 0 ;; 
+    p42) run_test 45 && exit 0 ;; 
+    p43) run_test 46 && exit 0 ;; 
+    p44) run_test 47 && exit 0 ;; 
+    p45) run_test 48 && exit 0 ;; 
+    p46) run_test 49 && exit 0 ;; 
+    p47) run_test 50 && exit 0 ;; 
+    p48) run_test 51 && exit 0 ;; 
+    p49) run_test 52 && exit 0 ;; 
+    p50) run_test 53 && exit 0 ;; 
+    p51) run_test 54 && exit 0 ;; 
+    p52) run_test 55 && exit 0 ;; 
+    p53) run_test 56 && exit 0 ;; 
+    p54) run_test 57 && exit 0 ;; 
+    p55) run_test 58 && exit 0 ;; 
+    p56) run_test 59 && exit 0 ;; 
+    p57) run_test 60 && exit 0 ;; 
+    p58) run_test 61 && exit 0 ;; 
+    p59) run_test 62 && exit 0 ;; 
+    p60) run_test 63 && exit 0 ;; 
+    p61) run_test 64 && exit 0 ;; 
+    p62) run_test 65 && exit 0 ;; 
+    p63) run_test 66 && exit 0 ;; 
+    p64) run_test 67 && exit 0 ;; 
+    p65) run_test 68 && exit 0 ;; 
+    p66) run_test 69 && exit 0 ;; 
+    p67) run_test 70 && exit 0 ;; 
+    p68) run_test 71 && exit 0 ;; 
+    p69) run_test 72 && exit 0 ;; 
+    p70) run_test 73 && exit 0 ;; 
+    p71) run_test 74 && exit 0 ;; 
+    p72) run_test 75 && exit 0 ;; 
+    p73) run_test 76 && exit 0 ;; 
+    p74) run_test 77 && exit 0 ;; 
+    p75) run_test 78 && exit 0 ;; 
+    p76) run_test 79 && exit 0 ;; 
+    p77) run_test 80 && exit 0 ;; 
+    p78) run_test 81 && exit 0 ;; 
+    p79) run_test 82 && exit 0 ;; 
+    p80) run_test 83 && exit 0 ;; 
+    p81) run_test 84 && exit 0 ;; 
+    p82) run_test 85 && exit 0 ;; 
+    p83) run_test 86 && exit 0 ;; 
+    p84) run_test 87 && exit 0 ;; 
+    p85) run_test 88 && exit 0 ;; 
+    p86) run_test 89 && exit 0 ;; 
+    p87) run_test 90 && exit 0 ;; 
+    p88) run_test 91 && exit 0 ;; 
+    p89) run_test 92 && exit 0 ;; 
+    p90) run_test 93 && exit 0 ;; 
+    p91) run_test 94 && exit 0 ;; 
+    p92) run_test 95 && exit 0 ;; 
+    p93) run_test 96 && exit 0 ;; 
+    p94) run_test 97 && exit 0 ;; 
+    p95) run_test 98 && exit 0 ;; 
+    p96) run_test 99 && exit 0 ;; 
+    p97) run_test 100 && exit 0 ;; 
+    p98) run_test 101 && exit 0 ;; 
+    p99) run_test 102 && exit 0 ;; 
+    p100) run_test 103 && exit 0 ;; 
+    p101) run_test 104 && exit 0 ;; 
+    p102) run_test 105 && exit 0 ;; 
+    p103) run_test 106 && exit 0 ;; 
+    p104) run_test 107 && exit 0 ;; 
+    p105) run_test 108 && exit 0 ;; 
+    p106) run_test 109 && exit 0 ;; 
+    p107) run_test 110 && exit 0 ;; 
+    p108) run_test 111 && exit 0 ;; 
+    p109) run_test 112 && exit 0 ;; 
+    p110) run_test 113 && exit 0 ;; 
+    p111) run_test 114 && exit 0 ;; 
+    p112) run_test 115 && exit 0 ;; 
+    p113) run_test 116 && exit 0 ;; 
+    p114) run_test 117 && exit 0 ;; 
+    p115) run_test 118 && exit 0 ;; 
+    p116) run_test 119 && exit 0 ;; 
+    p117) run_test 120 && exit 0 ;; 
+    p118) run_test 121 && exit 0 ;; 
+    p119) run_test 122 && exit 0 ;; 
+    p120) run_test 123 && exit 0 ;; 
+    p121) run_test 124 && exit 0 ;; 
+    p122) run_test 125 && exit 0 ;; 
+    p123) run_test 126 && exit 0 ;; 
+    p124) run_test 127 && exit 0 ;; 
+    p125) run_test 128 && exit 0 ;; 
+    p126) run_test 129 && exit 0 ;; 
+    p127) run_test 130 && exit 0 ;; 
+    p128) run_test 131 && exit 0 ;; 
+    p129) run_test 132 && exit 0 ;; 
+    p130) run_test 133 && exit 0 ;; 
+    p131) run_test 134 && exit 0 ;; 
+    p132) run_test 135 && exit 0 ;; 
+    p133) run_test 136 && exit 0 ;; 
+    p134) run_test 139 && exit 0 ;; 
+    p135) run_test 140 && exit 0 ;; 
+    p136) run_test 141 && exit 0 ;; 
+    p137) run_test 142 && exit 0 ;; 
+    p138) run_test 143 && exit 0 ;; 
+    p139) run_test 144 && exit 0 ;; 
+    p140) run_test 146 && exit 0 ;; 
+    n1) run_test 30 && exit 0 ;; 
+    n2) run_test 34 && exit 0 ;; 
+    n3) run_test 38 && exit 0 ;; 
+esac
+exit 1

python/data/tests-list/gmp/gmp-bug-13420-13421/tests-list.txt

@@ -0,0 +1,140 @@
+n1
+n2
+p1
+p2
+p3
+p4
+p5
+p6
+p7
+p8
+p9
+p10
+p11
+p12
+p13
+p14
+p15
+p16
+p17
+p18
+p19
+p20
+p21
+p22
+p23
+p24
+p25
+p26
+p27
+p28
+p29
+p30
+p31
+p32
+p33
+p34
+p36
+p37
+p38
+p39
+p40
+p41
+p42
+p43
+p44
+p46
+p47
+p48
+p49
+p50
+p51
+p52
+p53
+p54
+p55
+p56
+p57
+p58
+p59
+p60
+p61
+p62
+p63
+p64
+p65
+p66
+p67
+p68
+p69
+p70
+p71
+p72
+p73
+p74
+p75
+p76
+p77
+p78
+p79
+p80
+p81
+p82
+p83
+p84
+p85
+p86
+p87
+p88
+p89
+p90
+p91
+p92
+p93
+p94
+p95
+p96
+p97
+p98
+p99
+p100
+p101
+p102
+p103
+p104
+p105
+p106
+p107
+p108
+p109
+p110
+p111
+p112
+p113
+p114
+p115
+p116
+p117
+p118
+p119
+p120
+p121
+p122
+p123
+p124
+p125
+p126
+p127
+p128
+p129
+p130
+p131
+p132
+p133
+p134
+p135
+p136
+p137
+p138
+p139
+p140

python/data/tests-list/gmp/gmp-bug-14166-14167/settings.py

@@ -0,0 +1,83 @@
+"""
+This file includes all the settings that could be modified for running SearchRepair/SOSRepair
+
+* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
+* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
+ DB
+* Z3_COMMAND: The z3 command on this machine.
+* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
+* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
+* DATABASE: Information about the database.
+* LOGGING: Settings for logging.
+* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
+* VALID_TYPES: The variable types that are right now supported by SR.
+------ Settings related to file under repair -------
+* TESTS_LIST: The path to a list of the tests that could be run on the file
+* TEST_SCRIPT: The path to a script that will run the test
+* COMPILE_SCRIPT: The path to a script that will compile the code
+* FAULTY_CODE: The path to the faulty code (a C file)
+* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
+* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
+automatically)
+* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
+* SOSREPAIR: If set to False it will only run SearchRepair features
+* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
+* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
+"""
+__author__ = 'Afsoon Afzal'
+
+import logging
+
+
+LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
+
+GENERATE_DB_PATH = '/experiment/src'
+
+Z3_COMMAND = '/opt/sosrepair/bin/z3'
+
+LARGEST_SNIPPET = 7
+SMALLEST_SNIPPET = 3
+
+DATABASE = {
+    'db_name': 'testdocker',
+    'user': 'docker',
+    'password': '1234'
+}
+
+LOGGING = {
+    'filename': 'logs/repair.log',
+    'level': logging.DEBUG
+}
+
+logging.basicConfig(**LOGGING)
+
+MAX_SUSPICIOUS_LINES = 10
+
+VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
+
+TESTS_LIST = "/experiment/tests-list.txt"
+TEST_SCRIPT = "/experiment/test.sh"
+TEST_SCRIPT_TYPE = "/bin/bash"
+COMPILE_SCRIPT = "/experiment/compile.sh"
+FAULTY_CODE = "/experiment/src/mpz/gcdext.c"
+
+
+COMPILE_EXTRA_ARGS = [
+                    "-I/experiment/src",
+                    "-I/usr/include",
+]
+
+MAKE_OUTPUT = "/experiment/makeout"
+
+METHOD_RANGE = (29, 119)
+# IF SOS+
+# METHOD_RANGE = (56, 57)
+
+SOSREPAIR = True
+
+NUMBER_OF_TIMES_RERUNNING_TESTS = 1
+EXCLUDE_SCANF = False
+
+BULK_RUN_PATH = ""
+
+GCOV_OBJECTS = "/experiment/src/mpz/.libs"

python/data/tests-list/gmp/gmp-bug-14166-14167/test.sh

@@ -0,0 +1,167 @@
+#!/bin/bash
+run_abbrev=False
+bugrev=13420
+time_limit=25
+dir=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
+run_test()
+{
+    cd $dir/src
+    ../gmp-run-tests.pl $1 $run_abbrev
+    if [ $? = 0 ] ; then
+        echo ""
+        echo "PASS"
+    else
+        echo ""
+        echo "FAIL"
+    fi
+    popd > /dev/null
+    return 0
+}
+case $1 in
+    p1) run_test 1 && exit 0 ;; 
+    p2) run_test 2 && exit 0 ;; 
+    p3) run_test 3 && exit 0 ;; 
+    p4) run_test 4 && exit 0 ;; 
+    p5) run_test 5 && exit 0 ;; 
+    p6) run_test 6 && exit 0 ;; 
+    p7) run_test 7 && exit 0 ;; 
+    p8) run_test 8 && exit 0 ;; 
+    p9) run_test 9 && exit 0 ;; 
+    p10) run_test 10 && exit 0 ;; 
+    p11) run_test 11 && exit 0 ;; 
+    p12) run_test 12 && exit 0 ;; 
+    p13) run_test 13 && exit 0 ;; 
+    p14) run_test 14 && exit 0 ;; 
+    p15) run_test 15 && exit 0 ;; 
+    p16) run_test 16 && exit 0 ;; 
+    p17) run_test 17 && exit 0 ;; 
+    p18) run_test 18 && exit 0 ;; 
+    p19) run_test 20 && exit 0 ;; 
+    p20) run_test 21 && exit 0 ;; 
+    p21) run_test 22 && exit 0 ;; 
+    p22) run_test 23 && exit 0 ;; 
+    p23) run_test 24 && exit 0 ;; 
+    p24) run_test 25 && exit 0 ;; 
+    p25) run_test 26 && exit 0 ;; 
+    p26) run_test 27 && exit 0 ;; 
+    p27) run_test 28 && exit 0 ;; 
+    p28) run_test 29 && exit 0 ;; 
+    p29) run_test 30 && exit 0 ;; 
+    p30) run_test 31 && exit 0 ;; 
+    p31) run_test 32 && exit 0 ;; 
+    p32) run_test 33 && exit 0 ;; 
+    p33) run_test 34 && exit 0 ;; 
+    p34) run_test 35 && exit 0 ;; 
+    p35) run_test 36 && exit 0 ;; 
+    p36) run_test 37 && exit 0 ;; 
+    p37) run_test 38 && exit 0 ;; 
+    p38) run_test 39 && exit 0 ;; 
+    p39) run_test 40 && exit 0 ;; 
+    p40) run_test 41 && exit 0 ;; 
+    p41) run_test 42 && exit 0 ;; 
+    p42) run_test 43 && exit 0 ;; 
+    p43) run_test 44 && exit 0 ;; 
+    p44) run_test 45 && exit 0 ;; 
+    p45) run_test 46 && exit 0 ;; 
+    p46) run_test 47 && exit 0 ;; 
+    p47) run_test 48 && exit 0 ;; 
+    p48) run_test 49 && exit 0 ;; 
+    p49) run_test 50 && exit 0 ;; 
+    p50) run_test 52 && exit 0 ;; 
+    p51) run_test 53 && exit 0 ;; 
+    p52) run_test 54 && exit 0 ;; 
+    p53) run_test 55 && exit 0 ;; 
+    p54) run_test 56 && exit 0 ;; 
+    p55) run_test 57 && exit 0 ;; 
+    p56) run_test 58 && exit 0 ;; 
+    p57) run_test 59 && exit 0 ;; 
+    p58) run_test 60 && exit 0 ;; 
+    p59) run_test 61 && exit 0 ;; 
+    p60) run_test 62 && exit 0 ;; 
+    p61) run_test 63 && exit 0 ;; 
+    p62) run_test 64 && exit 0 ;; 
+    p63) run_test 65 && exit 0 ;; 
+    p64) run_test 66 && exit 0 ;; 
+    p65) run_test 67 && exit 0 ;; 
+    p66) run_test 68 && exit 0 ;; 
+    p67) run_test 69 && exit 0 ;; 
+    p68) run_test 70 && exit 0 ;; 
+    p69) run_test 71 && exit 0 ;; 
+    p70) run_test 72 && exit 0 ;; 
+    p71) run_test 73 && exit 0 ;; 
+    p72) run_test 74 && exit 0 ;; 
+    p73) run_test 75 && exit 0 ;; 
+    p74) run_test 76 && exit 0 ;; 
+    p75) run_test 77 && exit 0 ;; 
+    p76) run_test 78 && exit 0 ;; 
+    p77) run_test 79 && exit 0 ;; 
+    p78) run_test 80 && exit 0 ;; 
+    p79) run_test 81 && exit 0 ;; 
+    p80) run_test 82 && exit 0 ;; 
+    p81) run_test 83 && exit 0 ;; 
+    p82) run_test 84 && exit 0 ;; 
+    p83) run_test 85 && exit 0 ;; 
+    p84) run_test 86 && exit 0 ;; 
+    p85) run_test 87 && exit 0 ;; 
+    p86) run_test 88 && exit 0 ;; 
+    p87) run_test 89 && exit 0 ;; 
+    p88) run_test 90 && exit 0 ;; 
+    p89) run_test 91 && exit 0 ;; 
+    p90) run_test 92 && exit 0 ;; 
+    p91) run_test 93 && exit 0 ;; 
+    p92) run_test 94 && exit 0 ;; 
+    p93) run_test 95 && exit 0 ;; 
+    p94) run_test 96 && exit 0 ;; 
+    p95) run_test 97 && exit 0 ;; 
+    p96) run_test 98 && exit 0 ;; 
+    p97) run_test 99 && exit 0 ;; 
+    p98) run_test 100 && exit 0 ;; 
+    p99) run_test 101 && exit 0 ;; 
+    p100) run_test 102 && exit 0 ;; 
+    p101) run_test 103 && exit 0 ;; 
+    p102) run_test 104 && exit 0 ;; 
+    p103) run_test 105 && exit 0 ;; 
+    p104) run_test 106 && exit 0 ;; 
+    p105) run_test 107 && exit 0 ;; 
+    p106) run_test 108 && exit 0 ;; 
+    p107) run_test 109 && exit 0 ;; 
+    p108) run_test 110 && exit 0 ;; 
+    p109) run_test 111 && exit 0 ;; 
+    p110) run_test 112 && exit 0 ;; 
+    p111) run_test 113 && exit 0 ;; 
+    p112) run_test 114 && exit 0 ;; 
+    p113) run_test 115 && exit 0 ;; 
+    p114) run_test 116 && exit 0 ;; 
+    p115) run_test 117 && exit 0 ;; 
+    p116) run_test 118 && exit 0 ;; 
+    p117) run_test 119 && exit 0 ;; 
+    p118) run_test 120 && exit 0 ;; 
+    p119) run_test 121 && exit 0 ;; 
+    p120) run_test 122 && exit 0 ;; 
+    p121) run_test 123 && exit 0 ;; 
+    p122) run_test 124 && exit 0 ;; 
+    p123) run_test 125 && exit 0 ;; 
+    p124) run_test 126 && exit 0 ;; 
+    p125) run_test 127 && exit 0 ;; 
+    p126) run_test 128 && exit 0 ;; 
+    p127) run_test 129 && exit 0 ;; 
+    p128) run_test 130 && exit 0 ;; 
+    p129) run_test 131 && exit 0 ;; 
+    p130) run_test 132 && exit 0 ;; 
+    p131) run_test 133 && exit 0 ;; 
+    p132) run_test 134 && exit 0 ;; 
+    p133) run_test 135 && exit 0 ;; 
+    p134) run_test 136 && exit 0 ;; 
+    p135) run_test 137 && exit 0 ;; 
+    p136) run_test 138 && exit 0 ;; 
+    p137) run_test 139 && exit 0 ;; 
+    p138) run_test 140 && exit 0 ;; 
+    p139) run_test 141 && exit 0 ;; 
+    p140) run_test 142 && exit 0 ;; 
+    p141) run_test 143 && exit 0 ;; 
+    p142) run_test 144 && exit 0 ;; 
+    p143) run_test 145 && exit 0 ;; 
+    p144) run_test 146 && exit 0 ;; 
+    n1) run_test 19 && exit 0 ;; 
+esac
+exit 1

python/data/tests-list/gmp/gmp-bug-14166-14167/tests-list.txt

@@ -0,0 +1,142 @@
+n1
+p1
+p2
+p3
+p4
+p5
+p6
+p7
+p8
+p9
+p10
+p11
+p12
+p13
+p14
+p15
+p16
+p17
+p18
+p19
+p20
+p21
+p22
+p23
+p24
+p25
+p26
+p27
+p28
+p29
+p30
+p31
+p32
+p33
+p34
+p36
+p37
+p38
+p39
+p40
+p41
+p42
+p43
+p44
+p46
+p48
+p49
+p50
+p51
+p52
+p53
+p54
+p55
+p56
+p57
+p58
+p59
+p60
+p61
+p62
+p63
+p64
+p65
+p66
+p67
+p68
+p69
+p70
+p71
+p72
+p73
+p74
+p75
+p76
+p77
+p78
+p79
+p80
+p81
+p82
+p83
+p84
+p85
+p86
+p87
+p88
+p89
+p90
+p91
+p92
+p93
+p94
+p95
+p96
+p97
+p98
+p99
+p100
+p101
+p102
+p103
+p104
+p105
+p106
+p107
+p108
+p109
+p110
+p111
+p112
+p113
+p114
+p115
+p116
+p117
+p118
+p119
+p120
+p121
+p122
+p123
+p124
+p125
+p126
+p127
+p128
+p129
+p130
+p131
+p132
+p133
+p134
+p135
+p136
+p137
+p138
+p139
+p140
+p141
+p142
+p143
+p144

python/data/tests-list/gzip/README.md

@@ -0,0 +1,23 @@
+## Running `gzip` bugs
+
+After running the container you need to follow the following
+steps to prepare `SOSRepair` for running:
+
+1. Copy `makeout`, `compile.sh`, `test.sh` and `tests-list` to
+the container's `/experiment/`.
+2. Copy `settings.py` to the container's `/opt/sosrepair/sosrepair`.
+3. In the container, reconfigure the project with coverage flags:
+```
+cd /experiment/src
+./configure "CFLAGS=-m32 -fprofile-arcs -ftest-coverage" "CXXFLAGS=-m32 -fprofile-arcs -ftest-coverage" "LDFLAGS=-m32 -lgcov"
+make clean
+make
+```
+4. Run `/opt/sosrepair/prepare/setup.sh`.
+5. Set proper permissions by running `sudo chmod -R 777 /opt/sosrepair/sosrepair`.
+6. Setup environment variables:
+```
+export PYTHONPATH="/opt/sosrepair/bindings:${PYTHONPATH}"
+export CPATH=":/opt/sosrepair/include"
+export PATH="/opt/sosrepair/bin:$PATH"
+```

python/data/tests-list/gzip/compile.sh

@@ -0,0 +1,19 @@
+#!/bin/bash
+TIME_LIMIT=60
+HERE_DIR=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
+PATCH_EXE=$1
+PATCH_DIR=$(dirname "$PATCH_EXE")
+PROJECT_DIR="$HERE_DIR/src"
+
+# Remove the object file for the affected source code file
+# cp "$PATCH_DIR/inflate.c" "$PROJECT_DIR/inflate.c" && \
+pushd "$PROJECT_DIR" && \
+rm -f inflate.o && \
+
+# Clear the results of any test executions for any previous patches
+# pushd tests && \
+# make clean && \
+# popd && \
+
+# Rebuild the rest of the project
+timeout $TIME_LIMIT make || exit 1

python/data/tests-list/gzip/copy.sh

@@ -0,0 +1,10 @@
+#!/bin/bash
+
+
+CONTAINER=$1
+BUG=$2
+
+docker cp compile.sh $CONTAINER:/experiment/
+docker cp $BUG/test.sh $CONTAINER:/experiment/
+docker cp $BUG/tests-list.txt $CONTAINER:/experiment/
+docker cp $BUG/settings.py $CONTAINER:/opt/sosrepair/sosrepair/

python/data/tests-list/gzip/gzip-bug-2009-08-16-3fe0caeada-39a362ae9d/settings.py

@@ -0,0 +1,80 @@
+"""
+This file includes all the settings that could be modified for running SearchRepair/SOSRepair
+
+* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
+* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
+ DB
+* Z3_COMMAND: The z3 command on this machine.
+* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
+* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
+* DATABASE: Information about the database.
+* LOGGING: Settings for logging.
+* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
+* VALID_TYPES: The variable types that are right now supported by SR.
+------ Settings related to file under repair -------
+* TESTS_LIST: The path to a list of the tests that could be run on the file
+* TEST_SCRIPT: The path to a script that will run the test
+* COMPILE_SCRIPT: The path to a script that will compile the code
+* FAULTY_CODE: The path to the faulty code (a C file)
+* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
+* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
+automatically)
+* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
+* SOSREPAIR: If set to False it will only run SearchRepair features
+* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
+* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
+"""
+__author__ = 'Afsoon Afzal'
+
+import logging
+
+
+LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
+
+GENERATE_DB_PATH = '/experiment/src'
+
+Z3_COMMAND = '/opt/sosrepair/bin/z3'
+
+LARGEST_SNIPPET = 7
+SMALLEST_SNIPPET = 3
+
+DATABASE = {
+    'db_name': 'testdocker',
+    'user': 'docker',
+    'password': '1234'
+}
+
+LOGGING = {
+    'filename': 'logs/repair.log',
+    'level': logging.DEBUG
+}
+
+logging.basicConfig(**LOGGING)
+
+MAX_SUSPICIOUS_LINES = 10
+
+VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
+
+TESTS_LIST = "/experiment/tests-list.txt"
+TEST_SCRIPT = "/experiment/test.sh"
+TEST_SCRIPT_TYPE = "/bin/bash"
+COMPILE_SCRIPT = "/experiment/compile.sh"
+FAULTY_CODE = "/experiment/src/inflate.c"
+
+
+COMPILE_EXTRA_ARGS = [
+                    "-I/usr/include",
+]
+
+MAKE_OUTPUT = "/experiment/makeout"
+
+METHOD_RANGE = (300, 492)
+# IF SOS+
+# METHOD_RANGE = (338, 339)
+
+SOSREPAIR = True
+
+NUMBER_OF_TIMES_RERUNNING_TESTS = 1
+EXCLUDE_SCANF = False
+
+BULK_RUN_PATH = ""

python/data/tests-list/gzip/gzip-bug-2009-08-16-3fe0caeada-39a362ae9d/test.sh

@@ -0,0 +1,24 @@
+#!/bin/bash
+TEST_ID=$1
+DIR=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
+
+
+run_test()
+{
+    cd $DIR/src
+        timeout 5 perl $DIR/gzip-run-tests.pl $1
+    RESULT=$?
+    if [ $RESULT = 0 ] ; then
+	echo "PASS"
+    else
+	echo "FAIL"
+    fi
+    cd ..
+    return 0
+}
+case $TEST_ID in
+    p1) run_test 1 && exit 0 ;; 
+    p2) run_test 4 && exit 0 ;; 
+    n1) run_test 3 && exit 0 ;; 
+esac
+exit 1

python/data/tests-list/gzip/gzip-bug-2009-08-16-3fe0caeada-39a362ae9d/tests-list.txt

@@ -0,0 +1,3 @@
+n1
+p1
+p2

python/data/tests-list/gzip/gzip-bug-2009-09-26-a1d3d4019d-f17cbd13a1/notes.md

@@ -0,0 +1,5 @@
+For running SOS+ on this bug, we manually helped in finding
+correct set of live variables. Variable `ifd` is global variable
+therefore not considered by SOS+ as a live variable.
+We manually changed code in `fault_localization/suspicious_block.py`
+to include `ifd` as a variable.

python/data/tests-list/gzip/gzip-bug-2009-09-26-a1d3d4019d-f17cbd13a1/settings.py

@@ -0,0 +1,80 @@
+"""
+This file includes all the settings that could be modified for running SearchRepair/SOSRepair
+
+* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
+* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
+ DB
+* Z3_COMMAND: The z3 command on this machine.
+* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
+* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
+* DATABASE: Information about the database.
+* LOGGING: Settings for logging.
+* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
+* VALID_TYPES: The variable types that are right now supported by SR.
+------ Settings related to file under repair -------
+* TESTS_LIST: The path to a list of the tests that could be run on the file
+* TEST_SCRIPT: The path to a script that will run the test
+* COMPILE_SCRIPT: The path to a script that will compile the code
+* FAULTY_CODE: The path to the faulty code (a C file)
+* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
+* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
+automatically)
+* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
+* SOSREPAIR: If set to False it will only run SearchRepair features
+* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
+* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
+"""
+__author__ = 'Afsoon Afzal'
+
+import logging
+
+
+LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
+
+GENERATE_DB_PATH = '/experiment/src'
+
+Z3_COMMAND = '/opt/sosrepair/bin/z3'
+
+LARGEST_SNIPPET = 7
+SMALLEST_SNIPPET = 3
+
+DATABASE = {
+    'db_name': 'testdocker',
+    'user': 'docker',
+    'password': '1234'
+}
+
+LOGGING = {
+    'filename': 'logs/repair.log',
+    'level': logging.DEBUG
+}
+
+logging.basicConfig(**LOGGING)
+
+MAX_SUSPICIOUS_LINES = 10
+
+VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
+
+TESTS_LIST = "/experiment/tests-list.txt"
+TEST_SCRIPT = "/experiment/test.sh"
+TEST_SCRIPT_TYPE = "/bin/bash"
+COMPILE_SCRIPT = "/experiment/compile.sh"
+FAULTY_CODE = "/experiment/src/gzip.c"
+
+
+COMPILE_EXTRA_ARGS = [
+                    "-I/usr/include",
+]
+
+MAKE_OUTPUT = "/experiment/makeout"
+
+METHOD_RANGE = (608, 692)
+# IF SOS+
+# METHOD_RANGE = (653, 654)
+
+SOSREPAIR = True
+
+NUMBER_OF_TIMES_RERUNNING_TESTS = 1
+EXCLUDE_SCANF = False
+
+BULK_RUN_PATH = ""

python/data/tests-list/gzip/gzip-bug-2009-09-26-a1d3d4019d-f17cbd13a1/test.sh

@@ -0,0 +1,25 @@
+#!/bin/bash
+TEST_ID=$1
+DIR=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
+
+
+run_test()
+{
+    cd $DIR/src
+        timeout 5 /usr/bin/perl $DIR/gzip-run-tests.pl $1
+    RESULT=$?
+    if [ $RESULT = 0 ] ; then
+	echo "PASS"
+    else
+	echo "FAIL"
+    fi
+    cd ..
+    return 0
+}
+case $TEST_ID in
+    p1) run_test 1 && exit 0 ;; 
+    p2) run_test 3 && exit 0 ;; 
+    p3) run_test 4 && exit 0 ;; 
+    n1) run_test 7 && exit 0 ;; 
+esac
+exit 1

python/data/tests-list/gzip/gzip-bug-2009-09-26-a1d3d4019d-f17cbd13a1/tests-list.txt

@@ -0,0 +1,4 @@
+n1
+p1
+p2
+p3

python/data/tests-list/gzip/gzip-bug-2009-10-09-1a085b1446-118a107f2d/settings.py

@@ -0,0 +1,80 @@
+"""
+This file includes all the settings that could be modified for running SearchRepair/SOSRepair
+
+* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
+* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
+ DB
+* Z3_COMMAND: The z3 command on this machine.
+* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
+* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
+* DATABASE: Information about the database.
+* LOGGING: Settings for logging.
+* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
+* VALID_TYPES: The variable types that are right now supported by SR.
+------ Settings related to file under repair -------
+* TESTS_LIST: The path to a list of the tests that could be run on the file
+* TEST_SCRIPT: The path to a script that will run the test
+* COMPILE_SCRIPT: The path to a script that will compile the code
+* FAULTY_CODE: The path to the faulty code (a C file)
+* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
+* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
+automatically)
+* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
+* SOSREPAIR: If set to False it will only run SearchRepair features
+* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
+* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
+"""
+__author__ = 'Afsoon Afzal'
+
+import logging
+
+
+LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
+
+GENERATE_DB_PATH = '/experiment/src'
+
+Z3_COMMAND = '/opt/sosrepair/bin/z3'
+
+LARGEST_SNIPPET = 7
+SMALLEST_SNIPPET = 3
+
+DATABASE = {
+    'db_name': 'testdocker',
+    'user': 'docker',
+    'password': '1234'
+}
+
+LOGGING = {
+    'filename': 'logs/repair.log',
+    'level': logging.DEBUG
+}
+
+logging.basicConfig(**LOGGING)
+
+MAX_SUSPICIOUS_LINES = 10
+
+VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
+
+TESTS_LIST = "/experiment/tests-list.txt"
+TEST_SCRIPT = "/experiment/test.sh"
+TEST_SCRIPT_TYPE = "/bin/bash"
+COMPILE_SCRIPT = "/experiment/compile.sh"
+FAULTY_CODE = "/experiment/src/gzip.c"
+
+
+COMPILE_EXTRA_ARGS = [
+                    "-I/usr/include",
+]
+
+MAKE_OUTPUT = "/experiment/makeout"
+
+METHOD_RANGE = (1254, 1438)
+# IF SOS+
+# METHOD_RANGE = (1269,1270)
+
+SOSREPAIR = True
+
+NUMBER_OF_TIMES_RERUNNING_TESTS = 1
+EXCLUDE_SCANF = False
+
+BULK_RUN_PATH = ""

python/data/tests-list/gzip/gzip-bug-2009-10-09-1a085b1446-118a107f2d/test.sh

@@ -0,0 +1,27 @@
+#!/bin/bash
+TEST_ID=$1
+DIR=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
+
+
+run_test()
+{
+    cd $DIR/src
+        timeout 5 perl $DIR/gzip-run-tests.pl $1
+    RESULT=$?
+    if [ $RESULT = 0 ] ; then
+	echo "PASS"
+    else
+	echo "FAIL"
+    fi
+    cd ..
+    return 0
+}
+case $TEST_ID in
+    p1) run_test 1 && exit 0 ;; 
+    p2) run_test 3 && exit 0 ;; 
+    p3) run_test 4 && exit 0 ;; 
+    p4) run_test 7 && exit 0 ;; 
+    p5) run_test 9 && exit 0 ;; 
+    n1) run_test 8 && exit 0 ;; 
+esac
+exit 1

python/data/tests-list/gzip/gzip-bug-2009-10-09-1a085b1446-118a107f2d/tests-list.txt

@@ -0,0 +1,6 @@
+n1
+p1
+p2
+p3
+p4
+p5

python/data/tests-list/gzip/gzip-bug-2010-02-19-3eb6091d69-884ef6d16c/settings.py

@@ -0,0 +1,80 @@
+"""
+This file includes all the settings that could be modified for running SearchRepair/SOSRepair
+
+* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
+* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
+ DB
+* Z3_COMMAND: The z3 command on this machine.
+* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
+* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
+* DATABASE: Information about the database.
+* LOGGING: Settings for logging.
+* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
+* VALID_TYPES: The variable types that are right now supported by SR.
+------ Settings related to file under repair -------
+* TESTS_LIST: The path to a list of the tests that could be run on the file
+* TEST_SCRIPT: The path to a script that will run the test
+* COMPILE_SCRIPT: The path to a script that will compile the code
+* FAULTY_CODE: The path to the faulty code (a C file)
+* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
+* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
+automatically)
+* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
+* SOSREPAIR: If set to False it will only run SearchRepair features
+* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
+* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
+"""
+__author__ = 'Afsoon Afzal'
+
+import logging
+
+
+LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
+
+GENERATE_DB_PATH = '/experiment/src'
+
+Z3_COMMAND = '/opt/sosrepair/bin/z3'
+
+LARGEST_SNIPPET = 7
+SMALLEST_SNIPPET = 3
+
+DATABASE = {
+    'db_name': 'testdocker',
+    'user': 'docker',
+    'password': '1234'
+}
+
+LOGGING = {
+    'filename': 'logs/repair.log',
+    'level': logging.DEBUG
+}
+
+logging.basicConfig(**LOGGING)
+
+MAX_SUSPICIOUS_LINES = 10
+
+VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
+
+TESTS_LIST = "/experiment/tests-list.txt"
+TEST_SCRIPT = "/experiment/test.sh"
+TEST_SCRIPT_TYPE = "/bin/bash"
+COMPILE_SCRIPT = "/experiment/compile.sh"
+FAULTY_CODE = "/experiment/src/gzip.c"
+
+
+COMPILE_EXTRA_ARGS = [
+                    "-I/usr/include",
+]
+
+MAKE_OUTPUT = "/experiment/makeout"
+
+METHOD_RANGE = (409, 585)
+# IF SOS+
+# METHOD_RANGE = (546, 547)
+
+SOSREPAIR = True
+
+NUMBER_OF_TIMES_RERUNNING_TESTS = 1
+EXCLUDE_SCANF = False
+
+BULK_RUN_PATH = ""

python/data/tests-list/gzip/gzip-bug-2010-02-19-3eb6091d69-884ef6d16c/test.sh

@@ -0,0 +1,30 @@
+#!/bin/bash
+TEST_ID=$1
+DIR=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
+
+
+run_test()
+{
+    cd $DIR/src
+        timeout 5 perl $DIR/gzip-run-tests.pl $1
+    RESULT=$?
+    if [ $RESULT = 0 ] ; then
+	echo "PASS"
+    else
+	echo "FAIL"
+    fi
+    cd ..
+    return 0
+}
+case $TEST_ID in
+    p1) run_test 1 && exit 0 ;; 
+    p2) run_test 3 && exit 0 ;; 
+    p3) run_test 4 && exit 0 ;; 
+    p4) run_test 5 && exit 0 ;; 
+    p5) run_test 7 && exit 0 ;; 
+    p6) run_test 8 && exit 0 ;; 
+    p7) run_test 9 && exit 0 ;; 
+    p8) run_test 12 && exit 0 ;; 
+    n1) run_test 6 && exit 0 ;; 
+esac
+exit 1

python/data/tests-list/gzip/gzip-bug-2010-02-19-3eb6091d69-884ef6d16c/tests-list.txt

@@ -0,0 +1,9 @@
+n1
+p1
+p2
+p3
+p4
+p5
+p6
+p7
+p8

python/data/tests-list/gzip/makeout

@@ -0,0 +1,79 @@
+Making all in lib
+make[1]: Entering directory `/experiment/src/lib'
+  GEN      arg-nonnull.h
+  GEN      c++defs.h
+  GEN      configmake.h
+  GEN      warn-on-use.h
+  GEN      fcntl.h
+  GEN      stdio.h
+  GEN      string.h
+  GEN      sys/stat.h
+  GEN      sys/time.h
+  GEN      time.h
+  GEN      unistd.h
+  GEN      wchar.h
+  GEN      wctype.h
+make  all-recursive
+make[2]: Entering directory `/experiment/src/lib'
+make[3]: Entering directory `/experiment/src/lib'
+  GEN      charset.alias
+  GEN      ref-add.sed
+  GEN      ref-del.sed
+  CC       exitfail.o
+  CC       freadahead.o
+  CC       freading.o
+  CC       localcharset.o
+  CC       close-stream.o
+  CC       xalloc-die.o
+  CC       closein.o
+  CC       closeout.o
+  CC       creat-safer.o
+  CC       dup-safer.o
+  CC       fcntl.o
+  CC       fd-safer.o
+  CC       fflush.o
+  CC       fpurge.o
+  CC       fseeko.o
+  CC       gettime.o
+  CC       open-safer.o
+  CC       pipe-safer.o
+  CC       quotearg.o
+  CC       utimens.o
+  CC       xmalloc.o
+  CC       yesno.o
+  AR       libgzip.a
+make[3]: Leaving directory `/experiment/src/lib'
+make[2]: Leaving directory `/experiment/src/lib'
+make[1]: Leaving directory `/experiment/src/lib'
+Making all in doc
+make[1]: Entering directory `/experiment/src/doc'
+make[1]: Nothing to be done for `all'.
+make[1]: Leaving directory `/experiment/src/doc'
+make[1]: Entering directory `/experiment/src'
+  CC       bits.o
+  CC       crypt.o
+  CC       deflate.o
+  CC       gzip.o
+  CC       inflate.o
+  CC       lzw.o
+  CC       trees.o
+  CC       unlzh.o
+  CC       unlzw.o
+  CC       unpack.o
+  CC       unzip.o
+  CC       util.o
+  CC       zip.o
+  GEN      gunzip
+  GEN      gzexe
+  GEN      zcat
+  GEN      zcmp
+  GEN      zdiff
+  GEN      zegrep
+  GEN      zfgrep
+  GEN      zforce
+  GEN      zgrep
+  GEN      zless
+  GEN      zmore
+  GEN      znew
+  CCLD     gzip
+make[1]: Leaving directory `/experiment/src'

python/data/tests-list/gzip/test.sh

@@ -0,0 +1,24 @@
+#!/bin/bash
+TEST_ID=$1
+DIR=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
+
+
+run_test()
+{
+    cd $DIR/src
+        timeout 5 perl $DIR/gzip-run-tests.pl $1
+    RESULT=$?
+    if [ $RESULT = 0 ] ; then
+	echo "PASS"
+    else
+	echo "FAIL"
+    fi
+    cd ..
+    return 0
+}
+case $TEST_ID in
+    p1) run_test 1 && exit 0 ;; 
+    p2) run_test 4 && exit 0 ;; 
+    n1) run_test 3 && exit 0 ;; 
+esac
+exit 1

python/data/tests-list/libtiff/README.md

@@ -0,0 +1,23 @@
+## Running `libtiff` bugs
+
+After running the container you need to follow the following
+steps to prepare `SOSRepair` for running:
+
+1. Copy `makeout`, `compile.sh`, `test.sh` and `tests-list` to
+the container's `/experiment/`.
+2. Copy `settings.py` to the container's `/opt/sosrepair/sosrepair`.
+3. In the container, reconfigure the project with coverage flags:
+```
+cd /experiment/src
+./configure "CFLAGS=-fprofile-arcs -ftest-coverage" "CXXFLAGS=-fprofile-arcs -ftest-coverage" "LDFLAGS=-lgcov"
+make clean
+make
+```
+4. Run `/opt/sosrepair/prepare/setup.sh`.
+5. Set proper permissions by running `sudo chmod -R 777 /opt/sosrepair/sosrepair`.
+6. Setup environment variables:
+```
+export PYTHONPATH="/opt/sosrepair/bindings:${PYTHONPATH}"
+export CPATH=":/opt/sosrepair/include"
+export PATH="/opt/sosrepair/bin:$PATH"
+```

python/data/tests-list/libtiff/compile.sh

@@ -0,0 +1,8 @@
+#!/bin/bash
+DIR=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
+
+cd $DIR/src
+#make clean
+(make && exit 0)|| exit 1
+
+

python/data/tests-list/libtiff/copy.sh

@@ -0,0 +1,10 @@
+#!/bin/bash
+
+
+CONTAINER=$1
+BUG=$2
+
+docker cp compile.sh $CONTAINER:/experiment/
+docker cp $BUG/test.sh $CONTAINER:/experiment/
+docker cp $BUG/tests-list.txt $CONTAINER:/experiment/
+docker cp $BUG/settings.py $CONTAINER:/opt/sosrepair/sosrepair/

python/data/tests-list/libtiff/libtiff-bug-2005-12-21-3b848a7-3edb9cd/settings.py

@@ -0,0 +1,83 @@
+"""
+This file includes all the settings that could be modified for running SearchRepair/SOSRepair
+
+* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
+* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
+ DB
+* Z3_COMMAND: The z3 command on this machine.
+* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
+* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
+* DATABASE: Information about the database.
+* LOGGING: Settings for logging.
+* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
+* VALID_TYPES: The variable types that are right now supported by SR.
+------ Settings related to file under repair -------
+* TESTS_LIST: The path to a list of the tests that could be run on the file
+* TEST_SCRIPT: The path to a script that will run the test
+* COMPILE_SCRIPT: The path to a script that will compile the code
+* FAULTY_CODE: The path to the faulty code (a C file)
+* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
+* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
+automatically)
+* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
+* SOSREPAIR: If set to False it will only run SearchRepair features
+* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
+* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
+"""
+__author__ = 'Afsoon Afzal'
+
+import logging
+
+
+LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
+
+GENERATE_DB_PATH = '/experiment/src'
+
+Z3_COMMAND = '/opt/sosrepair/bin/z3'
+
+LARGEST_SNIPPET = 7
+SMALLEST_SNIPPET = 3
+
+DATABASE = {
+    'db_name': 'testdocker',
+    'user': 'docker',
+    'password': '1234'
+}
+
+LOGGING = {
+    'filename': 'logs/repair.log',
+    'level': logging.DEBUG
+}
+
+logging.basicConfig(**LOGGING)
+
+MAX_SUSPICIOUS_LINES = 10
+
+VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
+
+TESTS_LIST = "/experiment/tests-list.txt"
+TEST_SCRIPT = "/experiment/test.sh"
+TEST_SCRIPT_TYPE = "/bin/bash"
+COMPILE_SCRIPT = "/experiment/compile.sh"
+FAULTY_CODE = "/experiment/src/libtiff/tif_dirread.c"
+
+
+COMPILE_EXTRA_ARGS = [
+                    "-I/experiment/src",
+                    "-I/usr/include",
+]
+
+MAKE_OUTPUT = "/experiment/makeout"
+
+METHOD_RANGE = (72, 683)
+# IF SOS+
+# METHOD_RANGE = (589, 590)
+
+SOSREPAIR = True
+
+NUMBER_OF_TIMES_RERUNNING_TESTS = 1
+EXCLUDE_SCANF = False
+
+BULK_RUN_PATH = ""
+
+GCOV_OBJECTS = "/experiment/src/libtiff/.libs"

python/data/tests-list/libtiff/libtiff-bug-2005-12-21-3b848a7-3edb9cd/test.sh

@@ -0,0 +1,63 @@
+#!/bin/bash
+bugrev=3b848a7
+dir=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
+
+run_test()
+{
+    cd $dir/src
+    /usr/bin/perl $dir/libtiff-run-tests.pl $1
+    RESULT=$?
+    
+    cd ..
+    return 0
+}
+
+run_test1()
+{
+    pushd $dir/src/test > /dev/null
+    test_script=$(sed "$1q;d" $dir/TESTS)
+    test_script_log="$test_script.log"
+    rm -f $test_script_log
+    timeout $timeout make $test_script_log
+    #timeout $timeout ./$test_script
+    return $?
+}
+
+case $1 in
+    p1) run_test 2 && exit 0 ;; 
+    p2) run_test 3 && exit 0 ;; 
+    p3) run_test 4 && exit 0 ;; 
+    p4) run_test 5 && exit 0 ;; 
+    p5) run_test 6 && exit 0 ;; 
+    p6) run_test 7 && exit 0 ;; 
+    p7) run_test 8 && exit 0 ;; 
+    p8) run_test 10 && exit 0 ;; 
+    p9) run_test 11 && exit 0 ;; 
+    p10) run_test 12 && exit 0 ;; 
+    p11) run_test 13 && exit 0 ;; 
+    p12) run_test 14 && exit 0 ;; 
+    p13) run_test 15 && exit 0 ;; 
+    p14) run_test 16 && exit 0 ;; 
+    p15) run_test 17 && exit 0 ;; 
+    p16) run_test 19 && exit 0 ;; 
+    p17) run_test 20 && exit 0 ;; 
+    p18) run_test 21 && exit 0 ;; 
+    p19) run_test 24 && exit 0 ;; 
+    p20) run_test 25 && exit 0 ;; 
+    p21) run_test 26 && exit 0 ;; 
+    p22) run_test 27 && exit 0 ;; 
+    p23) run_test 28 && exit 0 ;; 
+    p24) run_test 69 && exit 0 ;; 
+    p25) run_test 70 && exit 0 ;; 
+    p26) run_test 71 && exit 0 ;; 
+    p27) run_test 72 && exit 0 ;; 
+    p28) run_test 73 && exit 0 ;; 
+    p29) run_test 74 && exit 0 ;; 
+    p30) run_test 75 && exit 0 ;; 
+    p31) run_test 76 && exit 0 ;; 
+    p32) run_test 77 && exit 0 ;; 
+    p33) run_test 78 && exit 0 ;; 
+    n1) run_test 22 && exit 0 ;; 
+    n2) run_test 23 && exit 0 ;; 
+esac
+exit 1

python/data/tests-list/libtiff/libtiff-bug-2005-12-21-3b848a7-3edb9cd/tests-list.txt

@@ -0,0 +1,34 @@
+n1
+n2
+p1
+p2
+p3
+p5
+p6
+p7
+p8
+p9
+p10
+p11
+p12
+p13
+p14
+p15
+p16
+p17
+p18
+p19
+p20
+p21
+p22
+p23
+p24
+p25
+p26
+p27
+p28
+p29
+p30
+p31
+p32
+p33

python/data/tests-list/libtiff/libtiff-bug-2006-02-23-b2ce5d8-207c78a/settings.py

@@ -0,0 +1,83 @@
+"""
+This file includes all the settings that could be modified for running SearchRepair/SOSRepair
+
+* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
+* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
+ DB
+* Z3_COMMAND: The z3 command on this machine.
+* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
+* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
+* DATABASE: Information about the database.
+* LOGGING: Settings for logging.
+* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
+* VALID_TYPES: The variable types that are right now supported by SR.
+------ Settings related to file under repair -------
+* TESTS_LIST: The path to a list of the tests that could be run on the file
+* TEST_SCRIPT: The path to a script that will run the test
+* COMPILE_SCRIPT: The path to a script that will compile the code
+* FAULTY_CODE: The path to the faulty code (a C file)
+* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
+* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
+automatically)
+* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
+* SOSREPAIR: If set to False it will only run SearchRepair features
+* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
+* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
+"""
+__author__ = 'Afsoon Afzal'
+
+import logging
+
+
+LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
+
+GENERATE_DB_PATH = '/experiment/src'
+
+Z3_COMMAND = '/opt/sosrepair/bin/z3'
+
+LARGEST_SNIPPET = 7
+SMALLEST_SNIPPET = 3
+
+DATABASE = {
+    'db_name': 'testdocker',
+    'user': 'docker',
+    'password': '1234'
+}
+
+LOGGING = {
+    'filename': 'logs/repair.log',
+    'level': logging.DEBUG
+}
+
+logging.basicConfig(**LOGGING)
+
+MAX_SUSPICIOUS_LINES = 10
+
+VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
+
+TESTS_LIST = "/experiment/tests-list.txt"
+TEST_SCRIPT = "/experiment/test.sh"
+TEST_SCRIPT_TYPE = "/bin/bash"
+COMPILE_SCRIPT = "/experiment/compile.sh"
+FAULTY_CODE = "/experiment/src/libtiff/tif_dirwrite.c"
+
+
+COMPILE_EXTRA_ARGS = [
+                    "-I/experiment/src",
+                    "-I/usr/include",
+]
+
+MAKE_OUTPUT = "/experiment/makeout"
+
+METHOD_RANGE = (83, 403)
+# IF SOS+
+# METHOD_RANGE = (338, 339)
+
+SOSREPAIR = True
+
+NUMBER_OF_TIMES_RERUNNING_TESTS = 1
+EXCLUDE_SCANF = False
+
+BULK_RUN_PATH = ""
+
+GCOV_OBJECTS = "/experiment/src/libtiff/.libs"

python/data/tests-list/libtiff/libtiff-bug-2006-02-23-b2ce5d8-207c78a/test.sh

@@ -0,0 +1,52 @@
+#!/bin/bash
+bugrev=b2ce5d8
+dir=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
+
+
+run_test()
+{
+    cd $dir/src
+    /usr/bin/perl $dir/libtiff-run-tests.pl $1
+    RESULT=$?
+    
+    cd ..
+    return 0
+}
+case $1 in
+    p1) run_test 2 && exit 0 ;; 
+    p2) run_test 4 && exit 0 ;; 
+    p3) run_test 5 && exit 0 ;; 
+    p4) run_test 6 && exit 0 ;; 
+    p5) run_test 7 && exit 0 ;; 
+    p6) run_test 8 && exit 0 ;; 
+    p7) run_test 10 && exit 0 ;; 
+    p8) run_test 11 && exit 0 ;; 
+    p9) run_test 12 && exit 0 ;; 
+    p10) run_test 13 && exit 0 ;; 
+    p11) run_test 14 && exit 0 ;; 
+    p12) run_test 15 && exit 0 ;; 
+    p13) run_test 16 && exit 0 ;; 
+    p14) run_test 17 && exit 0 ;; 
+    p15) run_test 19 && exit 0 ;; 
+    p16) run_test 20 && exit 0 ;; 
+    p17) run_test 21 && exit 0 ;; 
+    p18) run_test 22 && exit 0 ;; 
+    p19) run_test 23 && exit 0 ;; 
+    p20) run_test 24 && exit 0 ;; 
+    p21) run_test 25 && exit 0 ;; 
+    p22) run_test 26 && exit 0 ;; 
+    p23) run_test 27 && exit 0 ;; 
+    p24) run_test 28 && exit 0 ;; 
+    p25) run_test 69 && exit 0 ;; 
+    p26) run_test 70 && exit 0 ;; 
+    p27) run_test 71 && exit 0 ;; 
+    p28) run_test 72 && exit 0 ;; 
+    p29) run_test 73 && exit 0 ;; 
+    p30) run_test 74 && exit 0 ;; 
+    p31) run_test 75 && exit 0 ;; 
+    p32) run_test 76 && exit 0 ;; 
+    p33) run_test 77 && exit 0 ;; 
+    p34) run_test 78 && exit 0 ;; 
+    n1) run_test 3 && exit 0 ;; 
+esac
+exit 1

python/data/tests-list/libtiff/libtiff-bug-2006-02-23-b2ce5d8-207c78a/tests-list.txt

@@ -0,0 +1,34 @@
+n1
+p1
+p2
+p4
+p5
+p6
+p7
+p8
+p9
+p10
+p11
+p12
+p13
+p14
+p15
+p16
+p17
+p18
+p19
+p20
+p21
+p22
+p23
+p24
+p25
+p26
+p27
+p28
+p29
+p30
+p31
+p32
+p33
+p34

python/data/tests-list/libtiff/libtiff-bug-2006-03-03-a72cf60-0a36d7f/settings.py

@@ -0,0 +1,83 @@
+"""
+This file includes all the settings that could be modified for running SearchRepair/SOSRepair
+
+* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
+* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
+ DB
+* Z3_COMMAND: The z3 command on this machine.
+* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
+* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
+* DATABASE: Information about the database.
+* LOGGING: Settings for logging.
+* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
+* VALID_TYPES: The variable types that are right now supported by SR.
+------ Settings related to file under repair -------
+* TESTS_LIST: The path to a list of the tests that could be run on the file
+* TEST_SCRIPT: The path to a script that will run the test
+* COMPILE_SCRIPT: The path to a script that will compile the code
+* FAULTY_CODE: The path to the faulty code (a C file)
+* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
+* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
+automatically)
+* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
+* SOSREPAIR: If set to False it will only run SearchRepair features
+* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
+* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
+"""
+__author__ = 'Afsoon Afzal'
+
+import logging
+
+
+LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
+
+GENERATE_DB_PATH = '/experiment/src'
+
+Z3_COMMAND = '/opt/sosrepair/bin/z3'
+
+LARGEST_SNIPPET = 7
+SMALLEST_SNIPPET = 3
+
+DATABASE = {
+    'db_name': 'testdocker',
+    'user': 'docker',
+    'password': '1234'
+}
+
+LOGGING = {
+    'filename': 'logs/repair.log',
+    'level': logging.DEBUG
+}
+
+logging.basicConfig(**LOGGING)
+
+MAX_SUSPICIOUS_LINES = 10
+
+VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
+
+TESTS_LIST = "/experiment/tests-list.txt"
+TEST_SCRIPT = "/experiment/test.sh"
+TEST_SCRIPT_TYPE = "/bin/bash"
+COMPILE_SCRIPT = "/experiment/compile.sh"
+FAULTY_CODE = "/experiment/src/libtiff/tif_dirread.c"
+
+
+COMPILE_EXTRA_ARGS = [
+                    "-I/experiment/src",
+                    "-I/usr/include",
+]
+
+MAKE_OUTPUT = "/experiment/makeout"
+
+METHOD_RANGE = (972, 1018)
+# IF SOS+
+# METHOD_RANGE = (976, 977)
+
+SOSREPAIR = True
+
+NUMBER_OF_TIMES_RERUNNING_TESTS = 1
+EXCLUDE_SCANF = False
+
+BULK_RUN_PATH = ""
+
+GCOV_OBJECTS = "/experiment/src/libtiff/.libs"

python/data/tests-list/libtiff/libtiff-bug-2006-03-03-a72cf60-0a36d7f/test.sh

@@ -0,0 +1,53 @@
+#!/bin/bash
+bugrev=a72cf60
+dir=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
+
+
+run_test()
+{
+    cd $dir/src
+    /usr/bin/perl $dir/libtiff-run-tests.pl $1
+    RESULT=$?
+
+    cd ..
+    return 0
+}
+case $1 in
+    p1) run_test 5 && exit 0 ;; 
+    p2) run_test 6 && exit 0 ;; 
+    p3) run_test 7 && exit 0 ;; 
+    p4) run_test 8 && exit 0 ;; 
+    p5) run_test 9 && exit 0 ;; 
+    p6) run_test 10 && exit 0 ;; 
+    p7) run_test 11 && exit 0 ;; 
+    p8) run_test 12 && exit 0 ;; 
+    p9) run_test 13 && exit 0 ;; 
+    p10) run_test 14 && exit 0 ;; 
+    p11) run_test 15 && exit 0 ;; 
+    p12) run_test 16 && exit 0 ;; 
+    p13) run_test 17 && exit 0 ;; 
+    p14) run_test 19 && exit 0 ;; 
+    p15) run_test 20 && exit 0 ;; 
+    p16) run_test 21 && exit 0 ;; 
+    p17) run_test 24 && exit 0 ;; 
+    p18) run_test 25 && exit 0 ;; 
+    p19) run_test 26 && exit 0 ;; 
+    p20) run_test 27 && exit 0 ;; 
+    p21) run_test 28 && exit 0 ;; 
+    p22) run_test 69 && exit 0 ;; 
+    p23) run_test 70 && exit 0 ;; 
+    p24) run_test 71 && exit 0 ;; 
+    p25) run_test 72 && exit 0 ;; 
+    p26) run_test 73 && exit 0 ;; 
+    p27) run_test 74 && exit 0 ;; 
+    p28) run_test 75 && exit 0 ;; 
+    p29) run_test 76 && exit 0 ;; 
+    p30) run_test 77 && exit 0 ;; 
+    p31) run_test 78 && exit 0 ;; 
+    n1) run_test 2 && exit 0 ;; 
+    n2) run_test 3 && exit 0 ;; 
+    n3) run_test 4 && exit 0 ;; 
+    n4) run_test 22 && exit 0 ;; 
+    n5) run_test 23 && exit 0 ;; 
+esac
+exit 1

python/data/tests-list/libtiff/libtiff-bug-2006-03-03-a72cf60-0a36d7f/tests-list.txt

@@ -0,0 +1,35 @@
+n1
+n2
+n3
+n4
+n5
+p2
+p3
+p4
+p5
+p6
+p7
+p8
+p9
+p10
+p11
+p12
+p13
+p14
+p15
+p16
+p17
+p18
+p19
+p20
+p21
+p22
+p23
+p24
+p25
+p26
+p27
+p28
+p29
+p30
+p31

python/data/tests-list/libtiff/libtiff-bug-2006-03-03-eec4c06-ee65c74/libtiff-bug-2006-03-03-a72cf60-0a36d7f/settings.py

@@ -0,0 +1,79 @@
+"""
+This file includes all the settings that could be modified for running SearchRepair/SOSRepair
+
+* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
+* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
+ DB
+* Z3_COMMAND: The z3 command on this machine.
+* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
+* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
+* DATABASE: Information about the database.
+* LOGGING: Settings for logging.
+* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
+* VALID_TYPES: The variable types that are right now supported by SR.
+------ Settings related to file under repair -------
+* TESTS_LIST: The path to a list of the tests that could be run on the file
+* TEST_SCRIPT: The path to a script that will run the test
+* COMPILE_SCRIPT: The path to a script that will compile the code
+* FAULTY_CODE: The path to the faulty code (a C file)
+* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
+* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
+automatically)
+* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
+* SOSREPAIR: If set to False it will only run SearchRepair features
+* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
+* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
+"""
+__author__ = 'Afsoon Afzal'
+
+import logging
+
+
+LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
+
+GENERATE_DB_PATH = '/experiment/src'
+
+Z3_COMMAND = '/opt/sosrepair/bin/z3'
+
+LARGEST_SNIPPET = 7
+SMALLEST_SNIPPET = 3
+
+DATABASE = {
+    'db_name': 'testdocker',
+    'user': 'docker',
+    'password': '1234'
+}
+
+LOGGING = {
+    'filename': 'logs/repair.log',
+    'level': logging.DEBUG
+}
+
+logging.basicConfig(**LOGGING)
+
+MAX_SUSPICIOUS_LINES = 10
+
+VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
+
+TESTS_LIST = "/experiment/tests-list.txt"
+TEST_SCRIPT = "/experiment/test.sh"
+TEST_SCRIPT_TYPE = "/bin/bash"
+COMPILE_SCRIPT = "/experiment/compile.sh"
+FAULTY_CODE = "/experiment/src/libtiff/tif_dirread.c"
+
+
+COMPILE_EXTRA_ARGS = [
+                    "-I/experiment/src",
+                    "-I/usr/include",
+]
+
+MAKE_OUTPUT = "/experiment/makeout"
+
+METHOD_RANGE = (972, 1018)
+
+SOSREPAIR = True
+
+NUMBER_OF_TIMES_RERUNNING_TESTS = 1
+EXCLUDE_SCANF = False
+
+BULK_RUN_PATH = ""

python/data/tests-list/libtiff/libtiff-bug-2006-03-03-eec4c06-ee65c74/libtiff-bug-2006-03-03-a72cf60-0a36d7f/test.sh

@@ -0,0 +1,63 @@
+#!/bin/bash
+bugrev=a72cf60
+dir=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
+
+#Check if coverage is being run. If so, don't use time limit.
+if [ `basename $1` = "coverage" ] ; then
+    cov=0
+else
+    cov=1
+fi
+
+run_test()
+{
+    cd $dir/src
+    if [ $cov -eq 0 ] ; then
+        /usr/bin/perl $dir/libtiff-run-tests.pl $1
+    else
+        $dir/limit /usr/bin/perl $dir/libtiff-run-tests.pl $1
+    fi
+    RESULT=$?
+
+    cd ..
+    return 0
+}
+case $2 in
+    p1) run_test 5 && exit 0 ;; 
+    p2) run_test 6 && exit 0 ;; 
+    p3) run_test 7 && exit 0 ;; 
+    p4) run_test 8 && exit 0 ;; 
+    p5) run_test 9 && exit 0 ;; 
+    p6) run_test 10 && exit 0 ;; 
+    p7) run_test 11 && exit 0 ;; 
+    p8) run_test 12 && exit 0 ;; 
+    p9) run_test 13 && exit 0 ;; 
+    p10) run_test 14 && exit 0 ;; 
+    p11) run_test 15 && exit 0 ;; 
+    p12) run_test 16 && exit 0 ;; 
+    p13) run_test 17 && exit 0 ;; 
+    p14) run_test 19 && exit 0 ;; 
+    p15) run_test 20 && exit 0 ;; 
+    p16) run_test 21 && exit 0 ;; 
+    p17) run_test 24 && exit 0 ;; 
+    p18) run_test 25 && exit 0 ;; 
+    p19) run_test 26 && exit 0 ;; 
+    p20) run_test 27 && exit 0 ;; 
+    p21) run_test 28 && exit 0 ;; 
+    p22) run_test 69 && exit 0 ;; 
+    p23) run_test 70 && exit 0 ;; 
+    p24) run_test 71 && exit 0 ;; 
+    p25) run_test 72 && exit 0 ;; 
+    p26) run_test 73 && exit 0 ;; 
+    p27) run_test 74 && exit 0 ;; 
+    p28) run_test 75 && exit 0 ;; 
+    p29) run_test 76 && exit 0 ;; 
+    p30) run_test 77 && exit 0 ;; 
+    p31) run_test 78 && exit 0 ;; 
+    n1) run_test 2 && exit 0 ;; 
+    n2) run_test 3 && exit 0 ;; 
+    n3) run_test 4 && exit 0 ;; 
+    n4) run_test 22 && exit 0 ;; 
+    n5) run_test 23 && exit 0 ;; 
+esac
+exit 1

python/data/tests-list/libtiff/libtiff-bug-2006-03-03-eec4c06-ee65c74/libtiff-bug-2006-03-03-a72cf60-0a36d7f/tests-list.txt

@@ -0,0 +1,35 @@
+n1
+n2
+n3
+n4
+n5
+p2
+p3
+p4
+p5
+p6
+p7
+p8
+p9
+p10
+p11
+p12
+p13
+p14
+p15
+p16
+p17
+p18
+p19
+p20
+p21
+p22
+p23
+p24
+p25
+p26
+p27
+p28
+p29
+p30
+p31

python/data/tests-list/libtiff/libtiff-bug-2006-03-03-eec4c06-ee65c74/settings.py

@@ -0,0 +1,83 @@
+"""
+This file includes all the settings that could be modified for running SearchRepair/SOSRepair
+
+* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
+* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
+ DB
+* Z3_COMMAND: The z3 command on this machine.
+* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
+* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
+* DATABASE: Information about the database.
+* LOGGING: Settings for logging.
+* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
+* VALID_TYPES: The variable types that are right now supported by SR.
+------ Settings related to file under repair -------
+* TESTS_LIST: The path to a list of the tests that could be run on the file
+* TEST_SCRIPT: The path to a script that will run the test
+* COMPILE_SCRIPT: The path to a script that will compile the code
+* FAULTY_CODE: The path to the faulty code (a C file)
+* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
+* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
+automatically)
+* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
+* SOSREPAIR: If set to False it will only run SearchRepair features
+* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
+* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
+"""
+__author__ = 'Afsoon Afzal'
+
+import logging
+
+
+LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
+
+GENERATE_DB_PATH = '/experiment/src'
+
+Z3_COMMAND = '/opt/sosrepair/bin/z3'
+
+LARGEST_SNIPPET = 7
+SMALLEST_SNIPPET = 3
+
+DATABASE = {
+    'db_name': 'testdocker',
+    'user': 'docker',
+    'password': '1234'
+}
+
+LOGGING = {
+    'filename': 'logs/repair.log',
+    'level': logging.DEBUG
+}
+
+logging.basicConfig(**LOGGING)
+
+MAX_SUSPICIOUS_LINES = 10
+
+VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
+
+TESTS_LIST = "/experiment/tests-list.txt"
+TEST_SCRIPT = "/experiment/test.sh"
+TEST_SCRIPT_TYPE = "/bin/bash"
+COMPILE_SCRIPT = "/experiment/compile.sh"
+FAULTY_CODE = "/experiment/src/libtiff/tif_dirread.c"
+
+
+COMPILE_EXTRA_ARGS = [
+                    "-I/experiment/src",
+                    "-I/usr/include",
+]
+
+MAKE_OUTPUT = "/experiment/makeout"
+
+METHOD_RANGE = (972, 1018)
+# IF SOS+
+# METHOD_RANGE = (976, 977)
+
+SOSREPAIR = True
+
+NUMBER_OF_TIMES_RERUNNING_TESTS = 1
+EXCLUDE_SCANF = False
+
+BULK_RUN_PATH = ""
+
+GCOV_OBJECTS = "/experiment/src/libtiff/.libs"

python/data/tests-list/libtiff/libtiff-bug-2006-03-03-eec4c06-ee65c74/test.sh

@@ -0,0 +1,55 @@
+#!/bin/bash
+bugrev=eec4c06
+
+dir=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
+
+
+run_test()
+{
+    cd $dir/src
+    /usr/bin/perl $dir/libtiff-run-tests.pl $1
+    RESULT=$?
+
+    cd ..
+    return 0
+}
+
+case $1 in
+    p1) run_test 5 && exit 0 ;; 
+    p2) run_test 6 && exit 0 ;; 
+    p3) run_test 7 && exit 0 ;; 
+    p4) run_test 8 && exit 0 ;; 
+    p5) run_test 9 && exit 0 ;; 
+    p6) run_test 10 && exit 0 ;; 
+    p7) run_test 11 && exit 0 ;; 
+    p8) run_test 12 && exit 0 ;; 
+    p9) run_test 13 && exit 0 ;; 
+    p10) run_test 14 && exit 0 ;; 
+    p11) run_test 15 && exit 0 ;; 
+    p12) run_test 16 && exit 0 ;; 
+    p13) run_test 17 && exit 0 ;; 
+    p14) run_test 19 && exit 0 ;; 
+    p15) run_test 20 && exit 0 ;; 
+    p16) run_test 21 && exit 0 ;; 
+    p17) run_test 24 && exit 0 ;; 
+    p18) run_test 25 && exit 0 ;; 
+    p19) run_test 26 && exit 0 ;; 
+    p20) run_test 27 && exit 0 ;; 
+    p21) run_test 28 && exit 0 ;; 
+    p22) run_test 69 && exit 0 ;; 
+    p23) run_test 70 && exit 0 ;; 
+    p24) run_test 71 && exit 0 ;; 
+    p25) run_test 72 && exit 0 ;; 
+    p26) run_test 73 && exit 0 ;; 
+    p27) run_test 74 && exit 0 ;; 
+    p28) run_test 75 && exit 0 ;; 
+    p29) run_test 76 && exit 0 ;; 
+    p30) run_test 77 && exit 0 ;; 
+    p31) run_test 78 && exit 0 ;; 
+    n1) run_test 2 && exit 0 ;; 
+    n2) run_test 3 && exit 0 ;; 
+    n3) run_test 4 && exit 0 ;; 
+    n4) run_test 22 && exit 0 ;; 
+    n5) run_test 23 && exit 0 ;; 
+esac
+exit 1

python/data/tests-list/libtiff/libtiff-bug-2006-03-03-eec4c06-ee65c74/tests-list.txt

@@ -0,0 +1,35 @@
+n1
+n2
+n3
+n4
+n5
+p2
+p3
+p4
+p5
+p6
+p7
+p8
+p9
+p10
+p11
+p12
+p13
+p14
+p15
+p16
+p17
+p18
+p19
+p20
+p21
+p22
+p23
+p24
+p25
+p26
+p27
+p28
+p29
+p30
+p31

python/data/tests-list/libtiff/libtiff-bug-2007-07-13-09e8220-f2d989d/notes.md

@@ -0,0 +1,3 @@
+To allow SOS+ to find the perfect patch you need to run it with
+flag `--all_patches`. Also limit the considered variables for
+insertion to `size` and `stripsize`.

python/data/tests-list/libtiff/libtiff-bug-2007-07-13-09e8220-f2d989d/settings.py

@@ -0,0 +1,83 @@
+"""
+This file includes all the settings that could be modified for running SearchRepair/SOSRepair
+
+* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
+* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
+ DB
+* Z3_COMMAND: The z3 command on this machine.
+* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
+* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
+* DATABASE: Information about the database.
+* LOGGING: Settings for logging.
+* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
+* VALID_TYPES: The variable types that are right now supported by SR.
+------ Settings related to file under repair -------
+* TESTS_LIST: The path to a list of the tests that could be run on the file
+* TEST_SCRIPT: The path to a script that will run the test
+* COMPILE_SCRIPT: The path to a script that will compile the code
+* FAULTY_CODE: The path to the faulty code (a C file)
+* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
+* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
+automatically)
+* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
+* SOSREPAIR: If set to False it will only run SearchRepair features
+* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
+* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
+"""
+__author__ = 'Afsoon Afzal'
+
+import logging
+
+
+LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
+
+GENERATE_DB_PATH = '/experiment/src'
+
+Z3_COMMAND = '/opt/sosrepair/bin/z3'
+
+LARGEST_SNIPPET = 7
+SMALLEST_SNIPPET = 3
+
+DATABASE = {
+    'db_name': 'testdocker',
+    'user': 'docker',
+    'password': '1234'
+}
+
+LOGGING = {
+    'filename': 'logs/repair.log',
+    'level': logging.DEBUG
+}
+
+logging.basicConfig(**LOGGING)
+
+MAX_SUSPICIOUS_LINES = 10
+
+VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
+
+TESTS_LIST = "/experiment/tests-list.txt"
+TEST_SCRIPT = "/experiment/test.sh"
+TEST_SCRIPT_TYPE = "/bin/bash"
+COMPILE_SCRIPT = "/experiment/compile.sh"
+FAULTY_CODE = "/experiment/src/libtiff/tif_read.c"
+
+
+COMPILE_EXTRA_ARGS = [
+                    "-I/experiment/src",
+                    "-I/usr/include",
+]
+
+MAKE_OUTPUT = "/experiment/makeout"
+
+METHOD_RANGE = (126, 168)
+# IF SOS+
+# METHOD_RANGE = (164, 165)
+
+SOSREPAIR = True
+
+NUMBER_OF_TIMES_RERUNNING_TESTS = 1
+EXCLUDE_SCANF = False
+
+BULK_RUN_PATH = ""
+
+GCOV_OBJECTS = "/experiment/src/libtiff/.libs"

python/data/tests-list/libtiff/libtiff-bug-2007-07-13-09e8220-f2d989d/test.sh

@@ -0,0 +1,78 @@
+#!/bin/bash
+bugrev=09e8220
+dir=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
+
+
+run_test()
+{
+    cd $dir/src
+    /usr/bin/perl $dir/libtiff-run-tests.pl $1
+    RESULT=$?
+
+    cd ..
+    return 0
+}
+case $1 in
+    p1) run_test 1 && exit 0 ;; 
+    p2) run_test 2 && exit 0 ;; 
+    p3) run_test 5 && exit 0 ;; 
+    p4) run_test 6 && exit 0 ;; 
+    p5) run_test 7 && exit 0 ;; 
+    p6) run_test 8 && exit 0 ;; 
+    p7) run_test 9 && exit 0 ;; 
+    p8) run_test 10 && exit 0 ;; 
+    p9) run_test 11 && exit 0 ;; 
+    p10) run_test 12 && exit 0 ;; 
+    p11) run_test 13 && exit 0 ;; 
+    p12) run_test 14 && exit 0 ;; 
+    p13) run_test 15 && exit 0 ;; 
+    p14) run_test 16 && exit 0 ;; 
+    p15) run_test 17 && exit 0 ;; 
+    p16) run_test 20 && exit 0 ;; 
+    p17) run_test 21 && exit 0 ;; 
+    p18) run_test 22 && exit 0 ;; 
+    p19) run_test 24 && exit 0 ;; 
+    p20) run_test 25 && exit 0 ;; 
+    p21) run_test 26 && exit 0 ;; 
+    p22) run_test 27 && exit 0 ;; 
+    p23) run_test 28 && exit 0 ;; 
+    p24) run_test 39 && exit 0 ;; 
+    p25) run_test 40 && exit 0 ;; 
+    p26) run_test 41 && exit 0 ;; 
+    p27) run_test 43 && exit 0 ;; 
+    p28) run_test 44 && exit 0 ;; 
+    p29) run_test 45 && exit 0 ;; 
+    p30) run_test 46 && exit 0 ;; 
+    p31) run_test 47 && exit 0 ;; 
+    p32) run_test 48 && exit 0 ;; 
+    p33) run_test 49 && exit 0 ;; 
+    p34) run_test 50 && exit 0 ;; 
+    p35) run_test 51 && exit 0 ;; 
+    p36) run_test 53 && exit 0 ;; 
+    p37) run_test 54 && exit 0 ;; 
+    p38) run_test 55 && exit 0 ;; 
+    p39) run_test 56 && exit 0 ;; 
+    p40) run_test 57 && exit 0 ;; 
+    p41) run_test 58 && exit 0 ;; 
+    p42) run_test 59 && exit 0 ;; 
+    p43) run_test 60 && exit 0 ;; 
+    p44) run_test 61 && exit 0 ;; 
+    p45) run_test 63 && exit 0 ;; 
+    p46) run_test 64 && exit 0 ;; 
+    p47) run_test 65 && exit 0 ;; 
+    p48) run_test 66 && exit 0 ;; 
+    p49) run_test 67 && exit 0 ;; 
+    p50) run_test 68 && exit 0 ;; 
+    p51) run_test 69 && exit 0 ;; 
+    p52) run_test 70 && exit 0 ;; 
+    p53) run_test 71 && exit 0 ;; 
+    p54) run_test 72 && exit 0 ;; 
+    p55) run_test 73 && exit 0 ;; 
+    p56) run_test 74 && exit 0 ;; 
+    p57) run_test 75 && exit 0 ;; 
+    p58) run_test 76 && exit 0 ;; 
+    p59) run_test 77 && exit 0 ;; 
+    p60) run_test 78 && exit 0 ;; 
+    n1) run_test 4 && exit 0 ;; 
+esac
+exit 1

python/data/tests-list/libtiff/libtiff-bug-2007-07-13-09e8220-f2d989d/tests-list.txt

@@ -0,0 +1,60 @@
+n1
+p1
+p2
+p4
+p5
+p6
+p7
+p8
+p9
+p10
+p11
+p12
+p13
+p14
+p15
+p16
+p17
+p18
+p19
+p20
+p21
+p22
+p23
+p24
+p25
+p26
+p27
+p28
+p29
+p30
+p31
+p32
+p33
+p34
+p35
+p36
+p37
+p38
+p39
+p40
+p41
+p42
+p43
+p44
+p45
+p46
+p47
+p48
+p49
+p50
+p51
+p52
+p53
+p54
+p55
+p56
+p57
+p58
+p59
+p60

python/data/tests-list/libtiff/libtiff-bug-2007-11-02-371336d-865f7b2/settings.py

@@ -0,0 +1,83 @@
+"""
+This file includes all the settings that could be modified for running SearchRepair/SOSRepair
+
+* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
+* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
+ DB
+* Z3_COMMAND: The z3 command on this machine.
+* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
+* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
+* DATABASE: Information about the database.
+* LOGGING: Settings for logging.
+* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
+* VALID_TYPES: The variable types that are right now supported by SR.
+------ Settings related to file under repair -------
+* TESTS_LIST: The path to a list of the tests that could be run on the file
+* TEST_SCRIPT: The path to a script that will run the test
+* COMPILE_SCRIPT: The path to a script that will compile the code
+* FAULTY_CODE: The path to the faulty code (a C file)
+* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
+* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
+automatically)
+* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
+* SOSREPAIR: If set to False it will only run SearchRepair features
+* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
+* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
+"""
+__author__ = 'Afsoon Afzal'
+
+import logging
+
+
+LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
+
+GENERATE_DB_PATH = '/experiment/src'
+
+Z3_COMMAND = '/opt/sosrepair/bin/z3'
+
+LARGEST_SNIPPET = 7
+SMALLEST_SNIPPET = 3
+
+DATABASE = {
+    'db_name': 'testdocker',
+    'user': 'docker',
+    'password': '1234'
+}
+
+LOGGING = {
+    'filename': 'logs/repair.log',
+    'level': logging.DEBUG
+}
+
+logging.basicConfig(**LOGGING)
+
+MAX_SUSPICIOUS_LINES = 10
+
+VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
+
+TESTS_LIST = "/experiment/tests-list.txt"
+TEST_SCRIPT = "/experiment/test.sh"
+TEST_SCRIPT_TYPE = "/bin/bash"
+COMPILE_SCRIPT = "/experiment/compile.sh"
+FAULTY_CODE = "/experiment/src/libtiff/tif_dirwrite.c"
+
+
+COMPILE_EXTRA_ARGS = [
+                    "-I/experiment/src",
+                    "-I/usr/include",
+]
+
+MAKE_OUTPUT = "/experiment/makeout"
+
+METHOD_RANGE = (311, 853)
+# IF SOS+
+# METHOD_RANGE = (346, 347)
+
+SOSREPAIR = True
+
+NUMBER_OF_TIMES_RERUNNING_TESTS = 1
+EXCLUDE_SCANF = False
+
+BULK_RUN_PATH = ""
+
+GCOV_OBJECTS = "/experiment/src/libtiff/.libs"

python/data/tests-list/libtiff/libtiff-bug-2007-11-02-371336d-865f7b2/test.sh

@@ -0,0 +1,77 @@
+#!/bin/bash
+bugrev=371336d
+dir=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
+
+run_test()
+{
+    cd $dir/src
+    /usr/bin/perl $dir/libtiff-run-tests.pl $1
+    RESULT=$?
+
+    cd ..
+    return 0
+}
+case $1 in    
+    p1) run_test 1 && exit 0 ;; 
+    p2) run_test 2 && exit 0 ;; 
+    p3) run_test 4 && exit 0 ;; 
+    p4) run_test 5 && exit 0 ;; 
+    p5) run_test 6 && exit 0 ;; 
+    p6) run_test 7 && exit 0 ;; 
+    p7) run_test 8 && exit 0 ;; 
+    p8) run_test 9 && exit 0 ;; 
+    p9) run_test 10 && exit 0 ;; 
+    p10) run_test 11 && exit 0 ;; 
+    p11) run_test 12 && exit 0 ;; 
+    p12) run_test 13 && exit 0 ;; 
+    p13) run_test 14 && exit 0 ;; 
+    p14) run_test 15 && exit 0 ;; 
+    p15) run_test 16 && exit 0 ;; 
+    p16) run_test 17 && exit 0 ;; 
+    p17) run_test 20 && exit 0 ;; 
+    p18) run_test 21 && exit 0 ;; 
+    p19) run_test 24 && exit 0 ;; 
+    p20) run_test 25 && exit 0 ;; 
+    p21) run_test 26 && exit 0 ;; 
+    p22) run_test 27 && exit 0 ;; 
+    p23) run_test 28 && exit 0 ;; 
+    p24) run_test 39 && exit 0 ;; 
+    p25) run_test 40 && exit 0 ;; 
+    p26) run_test 41 && exit 0 ;; 
+    p27) run_test 43 && exit 0 ;; 
+    p28) run_test 44 && exit 0 ;; 
+    p29) run_test 45 && exit 0 ;; 
+    p30) run_test 46 && exit 0 ;; 
+    p31) run_test 47 && exit 0 ;; 
+    p32) run_test 48 && exit 0 ;; 
+    p33) run_test 49 && exit 0 ;; 
+    p34) run_test 50 && exit 0 ;; 
+    p35) run_test 51 && exit 0 ;; 
+    p36) run_test 53 && exit 0 ;; 
+    p37) run_test 54 && exit 0 ;; 
+    p38) run_test 55 && exit 0 ;; 
+    p39) run_test 56 && exit 0 ;; 
+    p40) run_test 57 && exit 0 ;; 
+    p41) run_test 58 && exit 0 ;; 
+    p42) run_test 59 && exit 0 ;; 
+    p43) run_test 60 && exit 0 ;; 
+    p44) run_test 61 && exit 0 ;; 
+    p45) run_test 63 && exit 0 ;; 
+    p46) run_test 64 && exit 0 ;; 
+    p47) run_test 65 && exit 0 ;; 
+    p48) run_test 66 && exit 0 ;; 
+    p49) run_test 67 && exit 0 ;; 
+    p50) run_test 68 && exit 0 ;; 
+    p51) run_test 69 && exit 0 ;; 
+    p52) run_test 70 && exit 0 ;; 
+    p53) run_test 71 && exit 0 ;; 
+    p54) run_test 72 && exit 0 ;; 
+    p55) run_test 73 && exit 0 ;; 
+    p56) run_test 74 && exit 0 ;; 
+    p57) run_test 75 && exit 0 ;; 
+    p58) run_test 76 && exit 0 ;; 
+    p59) run_test 77 && exit 0 ;; 
+    p60) run_test 78 && exit 0 ;; 
+    n1) run_test 22 && exit 0 ;; 
+esac
+exit 1

python/data/tests-list/libtiff/libtiff-bug-2007-11-02-371336d-865f7b2/tests-list.txt

@@ -0,0 +1,60 @@
+n1
+p1
+p2
+p3
+p5
+p6
+p7
+p8
+p9
+p10
+p11
+p12
+p13
+p14
+p15
+p16
+p17
+p18
+p19
+p20
+p21
+p22
+p23
+p24
+p25
+p26
+p27
+p28
+p29
+p30
+p31
+p32
+p33
+p34
+p35
+p36
+p37
+p38
+p39
+p40
+p41
+p42
+p43
+p44
+p45
+p46
+p47
+p48
+p49
+p50
+p51
+p52
+p53
+p54
+p55
+p56
+p57
+p58
+p59
+p60

python/data/tests-list/libtiff/libtiff-bug-2009-02-05-764dbba-2e42d63/settings.py

@@ -0,0 +1,84 @@
+"""
+This file includes all the settings that could be modified for running SearchRepair/SOSRepair
+
+* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
+* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
+ DB
+* Z3_COMMAND: The z3 command on this machine.
+* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
+* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
+* DATABASE: Information about the database.
+* LOGGING: Settings for logging.
+* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
+* VALID_TYPES: The variable types that are right now supported by SR.
+------ Settings related to file under repair -------
+* TESTS_LIST: The path to a list of the tests that could be run on the file
+* TEST_SCRIPT: The path to a script that will run the test
+* COMPILE_SCRIPT: The path to a script that will compile the code
+* FAULTY_CODE: The path to the faulty code (a C file)
+* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
+* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
+automatically)
+* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
+* SOSREPAIR: If set to False it will only run SearchRepair features
+* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
+* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
+"""
+__author__ = 'Afsoon Afzal'
+
+import logging
+
+
+LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
+
+GENERATE_DB_PATH = '/experiment/src'
+
+Z3_COMMAND = '/opt/sosrepair/bin/z3'
+
+LARGEST_SNIPPET = 7
+SMALLEST_SNIPPET = 3
+
+DATABASE = {
+    'db_name': 'testdocker',
+    'user': 'docker',
+    'password': '1234'
+}
+
+LOGGING = {
+    'filename': 'logs/repair.log',
+    'level': logging.DEBUG
+}
+
+logging.basicConfig(**LOGGING)
+
+MAX_SUSPICIOUS_LINES = 10
+
+VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
+
+TESTS_LIST = "/experiment/tests-list.txt"
+TEST_SCRIPT = "/experiment/test.sh"
+TEST_SCRIPT_TYPE = "/bin/bash"
+COMPILE_SCRIPT = "/experiment/compile.sh"
+FAULTY_CODE = "/experiment/src/tools/tiffcrop.c"
+
+
+COMPILE_EXTRA_ARGS = [
+                    "-I/experiment/src",
+                    "-I/experiment/src/libtiff",
+                    "-I/usr/include",
+]
+
+MAKE_OUTPUT = "/experiment/makeout"
+
+METHOD_RANGE = (4950, 5131)
+# IF SOS+
+# METHOD_RANGE = (4969, 4970)
+
+SOSREPAIR = True
+
+NUMBER_OF_TIMES_RERUNNING_TESTS = 1
+EXCLUDE_SCANF = False
+
+BULK_RUN_PATH = ""
+
+GCOV_OBJECTS = ""

python/data/tests-list/libtiff/libtiff-bug-2009-02-05-764dbba-2e42d63/test.sh

@@ -0,0 +1,90 @@
+#!/bin/bash
+bugrev=764dbba
+dir=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
+
+
+run_test()
+{
+    cd $dir/src
+    /usr/bin/perl $dir/libtiff-run-tests.pl $1
+    RESULT=$?
+
+    cd ..
+    return 0
+}
+case $1 in
+    p1) run_test 1 && exit 0 ;; 
+    p2) run_test 2 && exit 0 ;; 
+    p3) run_test 3 && exit 0 ;; 
+    p4) run_test 4 && exit 0 ;; 
+    p5) run_test 5 && exit 0 ;; 
+    p6) run_test 6 && exit 0 ;; 
+    p7) run_test 7 && exit 0 ;; 
+    p8) run_test 8 && exit 0 ;; 
+    p9) run_test 9 && exit 0 ;; 
+    p10) run_test 10 && exit 0 ;; 
+    p11) run_test 11 && exit 0 ;; 
+    p12) run_test 12 && exit 0 ;; 
+    p13) run_test 13 && exit 0 ;; 
+    p14) run_test 14 && exit 0 ;; 
+    p15) run_test 15 && exit 0 ;; 
+    p16) run_test 16 && exit 0 ;; 
+    p17) run_test 17 && exit 0 ;; 
+    p18) run_test 19 && exit 0 ;; 
+    p19) run_test 20 && exit 0 ;; 
+    p20) run_test 21 && exit 0 ;; 
+    p21) run_test 22 && exit 0 ;; 
+    p22) run_test 23 && exit 0 ;; 
+    p23) run_test 24 && exit 0 ;; 
+    p24) run_test 25 && exit 0 ;; 
+    p25) run_test 26 && exit 0 ;; 
+    p26) run_test 27 && exit 0 ;; 
+    p27) run_test 28 && exit 0 ;; 
+    p28) run_test 29 && exit 0 ;; 
+    p29) run_test 30 && exit 0 ;; 
+    p30) run_test 31 && exit 0 ;; 
+    p31) run_test 33 && exit 0 ;; 
+    p32) run_test 34 && exit 0 ;; 
+    p33) run_test 35 && exit 0 ;; 
+    p34) run_test 36 && exit 0 ;; 
+    p35) run_test 37 && exit 0 ;; 
+    p36) run_test 38 && exit 0 ;; 
+    p37) run_test 49 && exit 0 ;; 
+    p38) run_test 50 && exit 0 ;; 
+    p39) run_test 51 && exit 0 ;; 
+    p40) run_test 53 && exit 0 ;; 
+    p41) run_test 54 && exit 0 ;; 
+    p42) run_test 55 && exit 0 ;; 
+    p43) run_test 56 && exit 0 ;; 
+    p44) run_test 57 && exit 0 ;; 
+    p45) run_test 58 && exit 0 ;; 
+    p46) run_test 59 && exit 0 ;; 
+    p47) run_test 60 && exit 0 ;; 
+    p48) run_test 61 && exit 0 ;; 
+    p49) run_test 63 && exit 0 ;; 
+    p50) run_test 64 && exit 0 ;; 
+    p51) run_test 65 && exit 0 ;; 
+    p52) run_test 66 && exit 0 ;; 
+    p53) run_test 67 && exit 0 ;; 
+    p54) run_test 68 && exit 0 ;; 
+    p55) run_test 69 && exit 0 ;; 
+    p56) run_test 70 && exit 0 ;; 
+    p57) run_test 71 && exit 0 ;; 
+    p58) run_test 72 && exit 0 ;; 
+    p59) run_test 73 && exit 0 ;; 
+    p60) run_test 74 && exit 0 ;; 
+    p61) run_test 75 && exit 0 ;; 
+    p62) run_test 76 && exit 0 ;; 
+    p63) run_test 77 && exit 0 ;; 
+    p64) run_test 78 && exit 0 ;; 
+    n1) run_test 39 && exit 0 ;; 
+    n2) run_test 40 && exit 0 ;; 
+    n3) run_test 41 && exit 0 ;; 
+    n4) run_test 43 && exit 0 ;; 
+    n5) run_test 44 && exit 0 ;; 
+    n6) run_test 45 && exit 0 ;; 
+    n7) run_test 46 && exit 0 ;; 
+    n8) run_test 47 && exit 0 ;; 
+    n9) run_test 48 && exit 0 ;; 
+esac
+exit 1

python/data/tests-list/libtiff/libtiff-bug-2009-02-05-764dbba-2e42d63/tests-list.txt

@@ -0,0 +1,72 @@
+n1
+n2
+n3
+n4
+n5
+n6
+n7
+n8
+n9
+p1
+p2
+p3
+p4
+p5
+p6
+p7
+p8
+p9
+p10
+p11
+p12
+p13
+p14
+p15
+p16
+p17
+p18
+p19
+p20
+p21
+p23
+p24
+p25
+p26
+p27
+p28
+p29
+p30
+p31
+p32
+p33
+p34
+p35
+p36
+p37
+p38
+p39
+p40
+p41
+p42
+p43
+p44
+p45
+p46
+p47
+p48
+p49
+p50
+p51
+p52
+p53
+p54
+p55
+p56
+p57
+p58
+p59
+p60
+p61
+p62
+p63
+p64

python/data/tests-list/libtiff/libtiff-bug-2009-08-28-e8a47d4-023b6df/settings.py

@@ -0,0 +1,83 @@
+"""
+This file includes all the settings that could be modified for running SearchRepair/SOSRepair
+
+* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
+* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
+ DB
+* Z3_COMMAND: The z3 command on this machine.
+* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
+* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
+* DATABASE: Information about the database.
+* LOGGING: Settings for logging.
+* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
+* VALID_TYPES: The variable types that are right now supported by SR.
+------ Settings related to file under repair -------
+* TESTS_LIST: The path to a list of the tests that could be run on the file
+* TEST_SCRIPT: The path to a script that will run the test
+* COMPILE_SCRIPT: The path to a script that will compile the code
+* FAULTY_CODE: The path to the faulty code (a C file)
+* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
+* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
+automatically)
+* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
+* SOSREPAIR: If set to False it will only run SearchRepair features
+* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
+* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
+"""
+__author__ = 'Afsoon Afzal'
+
+import logging
+
+
+LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
+
+GENERATE_DB_PATH = '/experiment/src'
+
+Z3_COMMAND = '/opt/sosrepair/bin/z3'
+
+LARGEST_SNIPPET = 7
+SMALLEST_SNIPPET = 3
+
+DATABASE = {
+    'db_name': 'testdocker',
+    'user': 'docker',
+    'password': '1234'
+}
+
+LOGGING = {
+    'filename': 'logs/repair.log',
+    'level': logging.DEBUG
+}
+
+logging.basicConfig(**LOGGING)
+
+MAX_SUSPICIOUS_LINES = 10
+
+VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
+
+TESTS_LIST = "/experiment/tests-list.txt"
+TEST_SCRIPT = "/experiment/test.sh"
+TEST_SCRIPT_TYPE = "/bin/bash"
+COMPILE_SCRIPT = "/experiment/compile.sh"
+FAULTY_CODE = "/experiment/src/tools/tiffinfo.c"
+
+
+COMPILE_EXTRA_ARGS = [
+                    "-I/experiment/src",
+                    "-I/usr/include",
+]
+
+MAKE_OUTPUT = "/experiment/makeout"
+
+METHOD_RANGE = (69, 161)
+# IF SOS+
+# METHOD_RANGE = (132, 134)
+
+SOSREPAIR = True
+
+NUMBER_OF_TIMES_RERUNNING_TESTS = 1
+EXCLUDE_SCANF = False
+
+BULK_RUN_PATH = ""
+
+GCOV_OBJECTS = ""

python/data/tests-list/libtiff/libtiff-bug-2009-08-28-e8a47d4-023b6df/test.sh

@@ -0,0 +1,91 @@
+#!/bin/bash
+bugrev=e8a47d4
+dir=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
+
+
+run_test()
+{
+    cd $dir/src
+    /usr/bin/perl $dir/libtiff-run-tests.pl $1
+    RESULT=$?
+
+    cd ..
+    return 0
+}
+case $1 in
+    p1) run_test 1 && exit 0 ;; 
+    p2) run_test 2 && exit 0 ;; 
+    p3) run_test 3 && exit 0 ;; 
+    p4) run_test 4 && exit 0 ;; 
+    p5) run_test 5 && exit 0 ;; 
+    p6) run_test 6 && exit 0 ;; 
+    p7) run_test 7 && exit 0 ;; 
+    p8) run_test 8 && exit 0 ;; 
+    p9) run_test 9 && exit 0 ;; 
+    p10) run_test 10 && exit 0 ;; 
+    p11) run_test 11 && exit 0 ;; 
+    p12) run_test 12 && exit 0 ;; 
+    p13) run_test 13 && exit 0 ;; 
+    p14) run_test 14 && exit 0 ;; 
+    p15) run_test 15 && exit 0 ;; 
+    p16) run_test 16 && exit 0 ;; 
+    p17) run_test 17 && exit 0 ;; 
+    p18) run_test 18 && exit 0 ;; 
+    p19) run_test 19 && exit 0 ;; 
+    p20) run_test 20 && exit 0 ;; 
+    p21) run_test 21 && exit 0 ;; 
+    p22) run_test 22 && exit 0 ;; 
+    p23) run_test 23 && exit 0 ;; 
+    p24) run_test 24 && exit 0 ;; 
+    p25) run_test 25 && exit 0 ;; 
+    p26) run_test 26 && exit 0 ;; 
+    p27) run_test 27 && exit 0 ;; 
+    p28) run_test 28 && exit 0 ;; 
+    p29) run_test 29 && exit 0 ;; 
+    p30) run_test 30 && exit 0 ;; 
+    p31) run_test 31 && exit 0 ;; 
+    p32) run_test 33 && exit 0 ;; 
+    p33) run_test 34 && exit 0 ;; 
+    p34) run_test 35 && exit 0 ;; 
+    p35) run_test 36 && exit 0 ;; 
+    p36) run_test 37 && exit 0 ;; 
+    p37) run_test 38 && exit 0 ;; 
+    p38) run_test 39 && exit 0 ;; 
+    p39) run_test 40 && exit 0 ;; 
+    p40) run_test 41 && exit 0 ;; 
+    p41) run_test 43 && exit 0 ;; 
+    p42) run_test 44 && exit 0 ;; 
+    p43) run_test 45 && exit 0 ;; 
+    p44) run_test 46 && exit 0 ;; 
+    p45) run_test 47 && exit 0 ;; 
+    p46) run_test 48 && exit 0 ;; 
+    p47) run_test 50 && exit 0 ;; 
+    p48) run_test 51 && exit 0 ;; 
+    p49) run_test 53 && exit 0 ;; 
+    p50) run_test 54 && exit 0 ;; 
+    p51) run_test 55 && exit 0 ;; 
+    p52) run_test 56 && exit 0 ;; 
+    p53) run_test 57 && exit 0 ;; 
+    p54) run_test 58 && exit 0 ;; 
+    p55) run_test 59 && exit 0 ;; 
+    p56) run_test 60 && exit 0 ;; 
+    p57) run_test 61 && exit 0 ;; 
+    p58) run_test 63 && exit 0 ;; 
+    p59) run_test 64 && exit 0 ;; 
+    p60) run_test 65 && exit 0 ;; 
+    p61) run_test 66 && exit 0 ;; 
+    p62) run_test 67 && exit 0 ;; 
+    p63) run_test 68 && exit 0 ;; 
+    p64) run_test 69 && exit 0 ;; 
+    p65) run_test 70 && exit 0 ;; 
+    p66) run_test 71 && exit 0 ;; 
+    p67) run_test 72 && exit 0 ;; 
+    p68) run_test 73 && exit 0 ;; 
+    p69) run_test 74 && exit 0 ;; 
+    p70) run_test 75 && exit 0 ;; 
+    p71) run_test 76 && exit 0 ;; 
+    p72) run_test 77 && exit 0 ;; 
+    p73) run_test 78 && exit 0 ;; 
+    n1) run_test 49 && exit 0 ;; 
+esac
+exit 1

python/data/tests-list/libtiff/libtiff-bug-2009-08-28-e8a47d4-023b6df/tests-list.txt

@@ -0,0 +1,74 @@
+n1
+p1
+p2
+p3
+p4
+p5
+p6
+p7
+p8
+p9
+p10
+p11
+p12
+p13
+p14
+p15
+p16
+p17
+p18
+p19
+p20
+p21
+p22
+p23
+p24
+p25
+p26
+p27
+p28
+p29
+p30
+p31
+p32
+p33
+p34
+p35
+p36
+p37
+p38
+p39
+p40
+p41
+p42
+p43
+p44
+p45
+p46
+p47
+p48
+p49
+p50
+p51
+p52
+p53
+p54
+p55
+p56
+p57
+p58
+p59
+p60
+p61
+p62
+p63
+p64
+p65
+p66
+p67
+p68
+p69
+p70
+p71
+p72
+p73

python/data/tests-list/libtiff/libtiff-bug-2010-11-27-eb326f9-eec7ec0/settings.py

@@ -0,0 +1,83 @@
+"""
+This file includes all the settings that could be modified for running SearchRepair/SOSRepair
+
+* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
+* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
+ DB
+* Z3_COMMAND: The z3 command on this machine.
+* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
+* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
+* DATABASE: Information about the database.
+* LOGGING: Settings for logging.
+* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
+* VALID_TYPES: The variable types that are right now supported by SR.
+------ Settings related to file under repair -------
+* TESTS_LIST: The path to a list of the tests that could be run on the file
+* TEST_SCRIPT: The path to a script that will run the test
+* COMPILE_SCRIPT: The path to a script that will compile the code
+* FAULTY_CODE: The path to the faulty code (a C file)
+* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
+* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
+automatically)
+* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
+* SOSREPAIR: If set to False it will only run SearchRepair features
+* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
+* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
+"""
+__author__ = 'Afsoon Afzal'
+
+import logging
+
+
+LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
+
+GENERATE_DB_PATH = '/experiment/src'
+
+Z3_COMMAND = '/opt/sosrepair/bin/z3'
+
+LARGEST_SNIPPET = 7
+SMALLEST_SNIPPET = 3
+
+DATABASE = {
+    'db_name': 'testdocker',
+    'user': 'docker',
+    'password': '1234'
+}
+
+LOGGING = {
+    'filename': 'logs/repair.log',
+    'level': logging.DEBUG
+}
+
+logging.basicConfig(**LOGGING)
+
+MAX_SUSPICIOUS_LINES = 10
+
+VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
+
+TESTS_LIST = "/experiment/tests-list.txt"
+TEST_SCRIPT = "/experiment/test.sh"
+TEST_SCRIPT_TYPE = "/bin/bash"
+COMPILE_SCRIPT = "/experiment/compile.sh"
+FAULTY_CODE = "/experiment/src/tools/tiff2pdf.c"
+
+
+COMPILE_EXTRA_ARGS = [
+                    "-I/experiment/src",
+                    "-I/usr/include",
+]
+
+MAKE_OUTPUT = "/experiment/makeout"
+
+METHOD_RANGE = (559, 784)
+# IF SOS+
+# METHOD_RANGE = (769, 770)
+
+SOSREPAIR = True
+
+NUMBER_OF_TIMES_RERUNNING_TESTS = 1
+EXCLUDE_SCANF = False
+
+BULK_RUN_PATH = ""
+
+GCOV_OBJECTS = ""

python/data/tests-list/libtiff/libtiff-bug-2010-11-27-eb326f9-eec7ec0/test.sh

@@ -0,0 +1,93 @@
+#!/bin/bash
+bugrev=eb326f9
+dir=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
+
+run_test()
+{
+    cd $dir/src
+    /usr/bin/perl $dir/libtiff-run-tests.pl $1
+    RESULT=$?
+
+    cd ..
+    return 0
+}
+case $1 in
+    p1) run_test 1 && exit 0 ;; 
+    p2) run_test 2 && exit 0 ;; 
+    p3) run_test 3 && exit 0 ;; 
+    p4) run_test 4 && exit 0 ;; 
+    p5) run_test 5 && exit 0 ;; 
+    p6) run_test 6 && exit 0 ;; 
+    p7) run_test 7 && exit 0 ;; 
+    p8) run_test 8 && exit 0 ;; 
+    p9) run_test 9 && exit 0 ;; 
+    p10) run_test 10 && exit 0 ;; 
+    p11) run_test 11 && exit 0 ;; 
+    p12) run_test 12 && exit 0 ;; 
+    p13) run_test 13 && exit 0 ;; 
+    p14) run_test 14 && exit 0 ;; 
+    p15) run_test 15 && exit 0 ;; 
+    p16) run_test 16 && exit 0 ;; 
+    p17) run_test 17 && exit 0 ;; 
+    p18) run_test 18 && exit 0 ;; 
+    p19) run_test 19 && exit 0 ;; 
+    p20) run_test 20 && exit 0 ;; 
+    p21) run_test 21 && exit 0 ;; 
+    p22) run_test 22 && exit 0 ;; 
+    p23) run_test 23 && exit 0 ;; 
+    p24) run_test 24 && exit 0 ;; 
+    p25) run_test 25 && exit 0 ;; 
+    p26) run_test 26 && exit 0 ;; 
+    p27) run_test 27 && exit 0 ;; 
+    p28) run_test 29 && exit 0 ;; 
+    p29) run_test 30 && exit 0 ;; 
+    p30) run_test 31 && exit 0 ;; 
+    p31) run_test 32 && exit 0 ;; 
+    p32) run_test 33 && exit 0 ;; 
+    p33) run_test 34 && exit 0 ;; 
+    p34) run_test 35 && exit 0 ;; 
+    p35) run_test 36 && exit 0 ;; 
+    p36) run_test 37 && exit 0 ;; 
+    p37) run_test 38 && exit 0 ;; 
+    p38) run_test 39 && exit 0 ;; 
+    p39) run_test 40 && exit 0 ;; 
+    p40) run_test 41 && exit 0 ;; 
+    p41) run_test 42 && exit 0 ;; 
+    p42) run_test 43 && exit 0 ;; 
+    p43) run_test 44 && exit 0 ;; 
+    p44) run_test 45 && exit 0 ;; 
+    p45) run_test 46 && exit 0 ;; 
+    p46) run_test 47 && exit 0 ;; 
+    p47) run_test 48 && exit 0 ;; 
+    p48) run_test 50 && exit 0 ;; 
+    p49) run_test 51 && exit 0 ;; 
+    p50) run_test 52 && exit 0 ;; 
+    p51) run_test 53 && exit 0 ;; 
+    p52) run_test 54 && exit 0 ;; 
+    p53) run_test 55 && exit 0 ;; 
+    p54) run_test 56 && exit 0 ;; 
+    p55) run_test 57 && exit 0 ;; 
+    p56) run_test 58 && exit 0 ;; 
+    p57) run_test 59 && exit 0 ;; 
+    p58) run_test 60 && exit 0 ;; 
+    p59) run_test 61 && exit 0 ;; 
+    p60) run_test 62 && exit 0 ;; 
+    p61) run_test 63 && exit 0 ;; 
+    p62) run_test 64 && exit 0 ;; 
+    p63) run_test 65 && exit 0 ;; 
+    p64) run_test 66 && exit 0 ;; 
+    p65) run_test 67 && exit 0 ;; 
+    p66) run_test 68 && exit 0 ;; 
+    p67) run_test 69 && exit 0 ;; 
+    p68) run_test 70 && exit 0 ;; 
+    p69) run_test 71 && exit 0 ;; 
+    p70) run_test 72 && exit 0 ;; 
+    p71) run_test 73 && exit 0 ;; 
+    p72) run_test 74 && exit 0 ;; 
+    p73) run_test 75 && exit 0 ;; 
+    p74) run_test 76 && exit 0 ;; 
+    p75) run_test 77 && exit 0 ;; 
+    p76) run_test 78 && exit 0 ;; 
+    n1) run_test 28 && exit 0 ;; 
+esac
+exit 1

python/data/tests-list/libtiff/libtiff-bug-2010-11-27-eb326f9-eec7ec0/tests-list.txt

@@ -0,0 +1,76 @@
+n1
+p1
+p2
+p3
+p4
+p5
+p6
+p7
+p8
+p9
+p10
+p11
+p12
+p13
+p14
+p15
+p16
+p17
+p18
+p19
+p20
+p21
+p23
+p24
+p25
+p26
+p27
+p28
+p29
+p30
+p31
+p32
+p33
+p34
+p35
+p36
+p37
+p38
+p39
+p40
+p41
+p42
+p43
+p44
+p45
+p46
+p47
+p48
+p49
+p50
+p51
+p52
+p53
+p54
+p55
+p56
+p57
+p58
+p59
+p60
+p61
+p62
+p63
+p64
+p65
+p66
+p67
+p68
+p69
+p70
+p71
+p72
+p73
+p74
+p75
+p76

python/data/tests-list/libtiff/makeout

@@ -0,0 +1,675 @@
+Making all in port
+make[1]: Entering directory `/experiment/src/port'
+if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff     -m32 -Wall -MT dummy.lo -MD -MP -MF ".deps/dummy.Tpo" -c -o dummy.lo dummy.c; \
+	then mv -f ".deps/dummy.Tpo" ".deps/dummy.Plo"; else rm -f ".deps/dummy.Tpo"; exit 1; fi
+mkdir .libs
+ gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -m32 -Wall -MT dummy.lo -MD -MP -MF .deps/dummy.Tpo -c dummy.c  -fPIC -DPIC -o .libs/dummy.o
+dummy.c:8:1: warning: 'libport_dummy_function' defined but not used [-Wunused-function]
+ libport_dummy_function()
+ ^
+ gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -m32 -Wall -MT dummy.lo -MD -MP -MF .deps/dummy.Tpo -c dummy.c -o dummy.o >/dev/null 2>&1
+/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o libport.la   dummy.lo  -lm -lc 
+ar cru .libs/libport.a .libs/dummy.o
+ranlib .libs/libport.a
+creating libport.la
+(cd .libs && rm -f libport.la && ln -s ../libport.la libport.la)
+make[1]: Leaving directory `/experiment/src/port'
+Making all in libtiff
+make[1]: Entering directory `/experiment/src/libtiff'
+make  all-am
+make[2]: Entering directory `/experiment/src/libtiff'
+if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_aux.lo -MD -MP -MF ".deps/tif_aux.Tpo" -c -o tif_aux.lo tif_aux.c; \
+	then mv -f ".deps/tif_aux.Tpo" ".deps/tif_aux.Plo"; else rm -f ".deps/tif_aux.Tpo"; exit 1; fi
+mkdir .libs
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_aux.lo -MD -MP -MF .deps/tif_aux.Tpo -c tif_aux.c  -fPIC -DPIC -o .libs/tif_aux.o
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_aux.lo -MD -MP -MF .deps/tif_aux.Tpo -c tif_aux.c -o tif_aux.o >/dev/null 2>&1
+if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_close.lo -MD -MP -MF ".deps/tif_close.Tpo" -c -o tif_close.lo tif_close.c; \
+	then mv -f ".deps/tif_close.Tpo" ".deps/tif_close.Plo"; else rm -f ".deps/tif_close.Tpo"; exit 1; fi
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_close.lo -MD -MP -MF .deps/tif_close.Tpo -c tif_close.c  -fPIC -DPIC -o .libs/tif_close.o
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_close.lo -MD -MP -MF .deps/tif_close.Tpo -c tif_close.c -o tif_close.o >/dev/null 2>&1
+if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_codec.lo -MD -MP -MF ".deps/tif_codec.Tpo" -c -o tif_codec.lo tif_codec.c; \
+	then mv -f ".deps/tif_codec.Tpo" ".deps/tif_codec.Plo"; else rm -f ".deps/tif_codec.Tpo"; exit 1; fi
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_codec.lo -MD -MP -MF .deps/tif_codec.Tpo -c tif_codec.c  -fPIC -DPIC -o .libs/tif_codec.o
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_codec.lo -MD -MP -MF .deps/tif_codec.Tpo -c tif_codec.c -o tif_codec.o >/dev/null 2>&1
+if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_color.lo -MD -MP -MF ".deps/tif_color.Tpo" -c -o tif_color.lo tif_color.c; \
+	then mv -f ".deps/tif_color.Tpo" ".deps/tif_color.Plo"; else rm -f ".deps/tif_color.Tpo"; exit 1; fi
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_color.lo -MD -MP -MF .deps/tif_color.Tpo -c tif_color.c  -fPIC -DPIC -o .libs/tif_color.o
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_color.lo -MD -MP -MF .deps/tif_color.Tpo -c tif_color.c -o tif_color.o >/dev/null 2>&1
+if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_compress.lo -MD -MP -MF ".deps/tif_compress.Tpo" -c -o tif_compress.lo tif_compress.c; \
+	then mv -f ".deps/tif_compress.Tpo" ".deps/tif_compress.Plo"; else rm -f ".deps/tif_compress.Tpo"; exit 1; fi
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_compress.lo -MD -MP -MF .deps/tif_compress.Tpo -c tif_compress.c  -fPIC -DPIC -o .libs/tif_compress.o
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_compress.lo -MD -MP -MF .deps/tif_compress.Tpo -c tif_compress.c -o tif_compress.o >/dev/null 2>&1
+if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_dir.lo -MD -MP -MF ".deps/tif_dir.Tpo" -c -o tif_dir.lo tif_dir.c; \
+	then mv -f ".deps/tif_dir.Tpo" ".deps/tif_dir.Plo"; else rm -f ".deps/tif_dir.Tpo"; exit 1; fi
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_dir.lo -MD -MP -MF .deps/tif_dir.Tpo -c tif_dir.c  -fPIC -DPIC -o .libs/tif_dir.o
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_dir.lo -MD -MP -MF .deps/tif_dir.Tpo -c tif_dir.c -o tif_dir.o >/dev/null 2>&1
+if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_dirinfo.lo -MD -MP -MF ".deps/tif_dirinfo.Tpo" -c -o tif_dirinfo.lo tif_dirinfo.c; \
+	then mv -f ".deps/tif_dirinfo.Tpo" ".deps/tif_dirinfo.Plo"; else rm -f ".deps/tif_dirinfo.Tpo"; exit 1; fi
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_dirinfo.lo -MD -MP -MF .deps/tif_dirinfo.Tpo -c tif_dirinfo.c  -fPIC -DPIC -o .libs/tif_dirinfo.o
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_dirinfo.lo -MD -MP -MF .deps/tif_dirinfo.Tpo -c tif_dirinfo.c -o tif_dirinfo.o >/dev/null 2>&1
+if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_dirread.lo -MD -MP -MF ".deps/tif_dirread.Tpo" -c -o tif_dirread.lo tif_dirread.c; \
+	then mv -f ".deps/tif_dirread.Tpo" ".deps/tif_dirread.Plo"; else rm -f ".deps/tif_dirread.Tpo"; exit 1; fi
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_dirread.lo -MD -MP -MF .deps/tif_dirread.Tpo -c tif_dirread.c  -fPIC -DPIC -o .libs/tif_dirread.o
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_dirread.lo -MD -MP -MF .deps/tif_dirread.Tpo -c tif_dirread.c -o tif_dirread.o >/dev/null 2>&1
+if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_dirwrite.lo -MD -MP -MF ".deps/tif_dirwrite.Tpo" -c -o tif_dirwrite.lo tif_dirwrite.c; \
+	then mv -f ".deps/tif_dirwrite.Tpo" ".deps/tif_dirwrite.Plo"; else rm -f ".deps/tif_dirwrite.Tpo"; exit 1; fi
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_dirwrite.lo -MD -MP -MF .deps/tif_dirwrite.Tpo -c tif_dirwrite.c  -fPIC -DPIC -o .libs/tif_dirwrite.o
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_dirwrite.lo -MD -MP -MF .deps/tif_dirwrite.Tpo -c tif_dirwrite.c -o tif_dirwrite.o >/dev/null 2>&1
+if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_dumpmode.lo -MD -MP -MF ".deps/tif_dumpmode.Tpo" -c -o tif_dumpmode.lo tif_dumpmode.c; \
+	then mv -f ".deps/tif_dumpmode.Tpo" ".deps/tif_dumpmode.Plo"; else rm -f ".deps/tif_dumpmode.Tpo"; exit 1; fi
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_dumpmode.lo -MD -MP -MF .deps/tif_dumpmode.Tpo -c tif_dumpmode.c  -fPIC -DPIC -o .libs/tif_dumpmode.o
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_dumpmode.lo -MD -MP -MF .deps/tif_dumpmode.Tpo -c tif_dumpmode.c -o tif_dumpmode.o >/dev/null 2>&1
+if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_error.lo -MD -MP -MF ".deps/tif_error.Tpo" -c -o tif_error.lo tif_error.c; \
+	then mv -f ".deps/tif_error.Tpo" ".deps/tif_error.Plo"; else rm -f ".deps/tif_error.Tpo"; exit 1; fi
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_error.lo -MD -MP -MF .deps/tif_error.Tpo -c tif_error.c  -fPIC -DPIC -o .libs/tif_error.o
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_error.lo -MD -MP -MF .deps/tif_error.Tpo -c tif_error.c -o tif_error.o >/dev/null 2>&1
+if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_extension.lo -MD -MP -MF ".deps/tif_extension.Tpo" -c -o tif_extension.lo tif_extension.c; \
+	then mv -f ".deps/tif_extension.Tpo" ".deps/tif_extension.Plo"; else rm -f ".deps/tif_extension.Tpo"; exit 1; fi
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_extension.lo -MD -MP -MF .deps/tif_extension.Tpo -c tif_extension.c  -fPIC -DPIC -o .libs/tif_extension.o
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_extension.lo -MD -MP -MF .deps/tif_extension.Tpo -c tif_extension.c -o tif_extension.o >/dev/null 2>&1
+if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_fax3.lo -MD -MP -MF ".deps/tif_fax3.Tpo" -c -o tif_fax3.lo tif_fax3.c; \
+	then mv -f ".deps/tif_fax3.Tpo" ".deps/tif_fax3.Plo"; else rm -f ".deps/tif_fax3.Tpo"; exit 1; fi
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_fax3.lo -MD -MP -MF .deps/tif_fax3.Tpo -c tif_fax3.c  -fPIC -DPIC -o .libs/tif_fax3.o
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_fax3.lo -MD -MP -MF .deps/tif_fax3.Tpo -c tif_fax3.c -o tif_fax3.o >/dev/null 2>&1
+if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_fax3sm.lo -MD -MP -MF ".deps/tif_fax3sm.Tpo" -c -o tif_fax3sm.lo tif_fax3sm.c; \
+	then mv -f ".deps/tif_fax3sm.Tpo" ".deps/tif_fax3sm.Plo"; else rm -f ".deps/tif_fax3sm.Tpo"; exit 1; fi
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_fax3sm.lo -MD -MP -MF .deps/tif_fax3sm.Tpo -c tif_fax3sm.c  -fPIC -DPIC -o .libs/tif_fax3sm.o
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_fax3sm.lo -MD -MP -MF .deps/tif_fax3sm.Tpo -c tif_fax3sm.c -o tif_fax3sm.o >/dev/null 2>&1
+if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_flush.lo -MD -MP -MF ".deps/tif_flush.Tpo" -c -o tif_flush.lo tif_flush.c; \
+	then mv -f ".deps/tif_flush.Tpo" ".deps/tif_flush.Plo"; else rm -f ".deps/tif_flush.Tpo"; exit 1; fi
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_flush.lo -MD -MP -MF .deps/tif_flush.Tpo -c tif_flush.c  -fPIC -DPIC -o .libs/tif_flush.o
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_flush.lo -MD -MP -MF .deps/tif_flush.Tpo -c tif_flush.c -o tif_flush.o >/dev/null 2>&1
+if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_getimage.lo -MD -MP -MF ".deps/tif_getimage.Tpo" -c -o tif_getimage.lo tif_getimage.c; \
+	then mv -f ".deps/tif_getimage.Tpo" ".deps/tif_getimage.Plo"; else rm -f ".deps/tif_getimage.Tpo"; exit 1; fi
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_getimage.lo -MD -MP -MF .deps/tif_getimage.Tpo -c tif_getimage.c  -fPIC -DPIC -o .libs/tif_getimage.o
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_getimage.lo -MD -MP -MF .deps/tif_getimage.Tpo -c tif_getimage.c -o tif_getimage.o >/dev/null 2>&1
+if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_jpeg.lo -MD -MP -MF ".deps/tif_jpeg.Tpo" -c -o tif_jpeg.lo tif_jpeg.c; \
+	then mv -f ".deps/tif_jpeg.Tpo" ".deps/tif_jpeg.Plo"; else rm -f ".deps/tif_jpeg.Tpo"; exit 1; fi
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_jpeg.lo -MD -MP -MF .deps/tif_jpeg.Tpo -c tif_jpeg.c  -fPIC -DPIC -o .libs/tif_jpeg.o
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_jpeg.lo -MD -MP -MF .deps/tif_jpeg.Tpo -c tif_jpeg.c -o tif_jpeg.o >/dev/null 2>&1
+if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_luv.lo -MD -MP -MF ".deps/tif_luv.Tpo" -c -o tif_luv.lo tif_luv.c; \
+	then mv -f ".deps/tif_luv.Tpo" ".deps/tif_luv.Plo"; else rm -f ".deps/tif_luv.Tpo"; exit 1; fi
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_luv.lo -MD -MP -MF .deps/tif_luv.Tpo -c tif_luv.c  -fPIC -DPIC -o .libs/tif_luv.o
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_luv.lo -MD -MP -MF .deps/tif_luv.Tpo -c tif_luv.c -o tif_luv.o >/dev/null 2>&1
+if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_lzw.lo -MD -MP -MF ".deps/tif_lzw.Tpo" -c -o tif_lzw.lo tif_lzw.c; \
+	then mv -f ".deps/tif_lzw.Tpo" ".deps/tif_lzw.Plo"; else rm -f ".deps/tif_lzw.Tpo"; exit 1; fi
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_lzw.lo -MD -MP -MF .deps/tif_lzw.Tpo -c tif_lzw.c  -fPIC -DPIC -o .libs/tif_lzw.o
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_lzw.lo -MD -MP -MF .deps/tif_lzw.Tpo -c tif_lzw.c -o tif_lzw.o >/dev/null 2>&1
+if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_next.lo -MD -MP -MF ".deps/tif_next.Tpo" -c -o tif_next.lo tif_next.c; \
+	then mv -f ".deps/tif_next.Tpo" ".deps/tif_next.Plo"; else rm -f ".deps/tif_next.Tpo"; exit 1; fi
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_next.lo -MD -MP -MF .deps/tif_next.Tpo -c tif_next.c  -fPIC -DPIC -o .libs/tif_next.o
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_next.lo -MD -MP -MF .deps/tif_next.Tpo -c tif_next.c -o tif_next.o >/dev/null 2>&1
+if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_ojpeg.lo -MD -MP -MF ".deps/tif_ojpeg.Tpo" -c -o tif_ojpeg.lo tif_ojpeg.c; \
+	then mv -f ".deps/tif_ojpeg.Tpo" ".deps/tif_ojpeg.Plo"; else rm -f ".deps/tif_ojpeg.Tpo"; exit 1; fi
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_ojpeg.lo -MD -MP -MF .deps/tif_ojpeg.Tpo -c tif_ojpeg.c  -fPIC -DPIC -o .libs/tif_ojpeg.o
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_ojpeg.lo -MD -MP -MF .deps/tif_ojpeg.Tpo -c tif_ojpeg.c -o tif_ojpeg.o >/dev/null 2>&1
+if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_open.lo -MD -MP -MF ".deps/tif_open.Tpo" -c -o tif_open.lo tif_open.c; \
+	then mv -f ".deps/tif_open.Tpo" ".deps/tif_open.Plo"; else rm -f ".deps/tif_open.Tpo"; exit 1; fi
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_open.lo -MD -MP -MF .deps/tif_open.Tpo -c tif_open.c  -fPIC -DPIC -o .libs/tif_open.o
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_open.lo -MD -MP -MF .deps/tif_open.Tpo -c tif_open.c -o tif_open.o >/dev/null 2>&1
+if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_packbits.lo -MD -MP -MF ".deps/tif_packbits.Tpo" -c -o tif_packbits.lo tif_packbits.c; \
+	then mv -f ".deps/tif_packbits.Tpo" ".deps/tif_packbits.Plo"; else rm -f ".deps/tif_packbits.Tpo"; exit 1; fi
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_packbits.lo -MD -MP -MF .deps/tif_packbits.Tpo -c tif_packbits.c  -fPIC -DPIC -o .libs/tif_packbits.o
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_packbits.lo -MD -MP -MF .deps/tif_packbits.Tpo -c tif_packbits.c -o tif_packbits.o >/dev/null 2>&1
+if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_pixarlog.lo -MD -MP -MF ".deps/tif_pixarlog.Tpo" -c -o tif_pixarlog.lo tif_pixarlog.c; \
+	then mv -f ".deps/tif_pixarlog.Tpo" ".deps/tif_pixarlog.Plo"; else rm -f ".deps/tif_pixarlog.Tpo"; exit 1; fi
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_pixarlog.lo -MD -MP -MF .deps/tif_pixarlog.Tpo -c tif_pixarlog.c  -fPIC -DPIC -o .libs/tif_pixarlog.o
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_pixarlog.lo -MD -MP -MF .deps/tif_pixarlog.Tpo -c tif_pixarlog.c -o tif_pixarlog.o >/dev/null 2>&1
+if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_predict.lo -MD -MP -MF ".deps/tif_predict.Tpo" -c -o tif_predict.lo tif_predict.c; \
+	then mv -f ".deps/tif_predict.Tpo" ".deps/tif_predict.Plo"; else rm -f ".deps/tif_predict.Tpo"; exit 1; fi
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_predict.lo -MD -MP -MF .deps/tif_predict.Tpo -c tif_predict.c  -fPIC -DPIC -o .libs/tif_predict.o
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_predict.lo -MD -MP -MF .deps/tif_predict.Tpo -c tif_predict.c -o tif_predict.o >/dev/null 2>&1
+if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_print.lo -MD -MP -MF ".deps/tif_print.Tpo" -c -o tif_print.lo tif_print.c; \
+	then mv -f ".deps/tif_print.Tpo" ".deps/tif_print.Plo"; else rm -f ".deps/tif_print.Tpo"; exit 1; fi
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_print.lo -MD -MP -MF .deps/tif_print.Tpo -c tif_print.c  -fPIC -DPIC -o .libs/tif_print.o
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_print.lo -MD -MP -MF .deps/tif_print.Tpo -c tif_print.c -o tif_print.o >/dev/null 2>&1
+if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_read.lo -MD -MP -MF ".deps/tif_read.Tpo" -c -o tif_read.lo tif_read.c; \
+	then mv -f ".deps/tif_read.Tpo" ".deps/tif_read.Plo"; else rm -f ".deps/tif_read.Tpo"; exit 1; fi
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_read.lo -MD -MP -MF .deps/tif_read.Tpo -c tif_read.c  -fPIC -DPIC -o .libs/tif_read.o
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_read.lo -MD -MP -MF .deps/tif_read.Tpo -c tif_read.c -o tif_read.o >/dev/null 2>&1
+if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_strip.lo -MD -MP -MF ".deps/tif_strip.Tpo" -c -o tif_strip.lo tif_strip.c; \
+	then mv -f ".deps/tif_strip.Tpo" ".deps/tif_strip.Plo"; else rm -f ".deps/tif_strip.Tpo"; exit 1; fi
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_strip.lo -MD -MP -MF .deps/tif_strip.Tpo -c tif_strip.c  -fPIC -DPIC -o .libs/tif_strip.o
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_strip.lo -MD -MP -MF .deps/tif_strip.Tpo -c tif_strip.c -o tif_strip.o >/dev/null 2>&1
+if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_swab.lo -MD -MP -MF ".deps/tif_swab.Tpo" -c -o tif_swab.lo tif_swab.c; \
+	then mv -f ".deps/tif_swab.Tpo" ".deps/tif_swab.Plo"; else rm -f ".deps/tif_swab.Tpo"; exit 1; fi
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_swab.lo -MD -MP -MF .deps/tif_swab.Tpo -c tif_swab.c  -fPIC -DPIC -o .libs/tif_swab.o
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_swab.lo -MD -MP -MF .deps/tif_swab.Tpo -c tif_swab.c -o tif_swab.o >/dev/null 2>&1
+if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_thunder.lo -MD -MP -MF ".deps/tif_thunder.Tpo" -c -o tif_thunder.lo tif_thunder.c; \
+	then mv -f ".deps/tif_thunder.Tpo" ".deps/tif_thunder.Plo"; else rm -f ".deps/tif_thunder.Tpo"; exit 1; fi
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_thunder.lo -MD -MP -MF .deps/tif_thunder.Tpo -c tif_thunder.c  -fPIC -DPIC -o .libs/tif_thunder.o
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_thunder.lo -MD -MP -MF .deps/tif_thunder.Tpo -c tif_thunder.c -o tif_thunder.o >/dev/null 2>&1
+if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_tile.lo -MD -MP -MF ".deps/tif_tile.Tpo" -c -o tif_tile.lo tif_tile.c; \
+	then mv -f ".deps/tif_tile.Tpo" ".deps/tif_tile.Plo"; else rm -f ".deps/tif_tile.Tpo"; exit 1; fi
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_tile.lo -MD -MP -MF .deps/tif_tile.Tpo -c tif_tile.c  -fPIC -DPIC -o .libs/tif_tile.o
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_tile.lo -MD -MP -MF .deps/tif_tile.Tpo -c tif_tile.c -o tif_tile.o >/dev/null 2>&1
+if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_unix.lo -MD -MP -MF ".deps/tif_unix.Tpo" -c -o tif_unix.lo tif_unix.c; \
+	then mv -f ".deps/tif_unix.Tpo" ".deps/tif_unix.Plo"; else rm -f ".deps/tif_unix.Tpo"; exit 1; fi
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_unix.lo -MD -MP -MF .deps/tif_unix.Tpo -c tif_unix.c  -fPIC -DPIC -o .libs/tif_unix.o
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_unix.lo -MD -MP -MF .deps/tif_unix.Tpo -c tif_unix.c -o tif_unix.o >/dev/null 2>&1
+if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_version.lo -MD -MP -MF ".deps/tif_version.Tpo" -c -o tif_version.lo tif_version.c; \
+	then mv -f ".deps/tif_version.Tpo" ".deps/tif_version.Plo"; else rm -f ".deps/tif_version.Tpo"; exit 1; fi
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_version.lo -MD -MP -MF .deps/tif_version.Tpo -c tif_version.c  -fPIC -DPIC -o .libs/tif_version.o
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_version.lo -MD -MP -MF .deps/tif_version.Tpo -c tif_version.c -o tif_version.o >/dev/null 2>&1
+if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_warning.lo -MD -MP -MF ".deps/tif_warning.Tpo" -c -o tif_warning.lo tif_warning.c; \
+	then mv -f ".deps/tif_warning.Tpo" ".deps/tif_warning.Plo"; else rm -f ".deps/tif_warning.Tpo"; exit 1; fi
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_warning.lo -MD -MP -MF .deps/tif_warning.Tpo -c tif_warning.c  -fPIC -DPIC -o .libs/tif_warning.o
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_warning.lo -MD -MP -MF .deps/tif_warning.Tpo -c tif_warning.c -o tif_warning.o >/dev/null 2>&1
+if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_write.lo -MD -MP -MF ".deps/tif_write.Tpo" -c -o tif_write.lo tif_write.c; \
+	then mv -f ".deps/tif_write.Tpo" ".deps/tif_write.Plo"; else rm -f ".deps/tif_write.Tpo"; exit 1; fi
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_write.lo -MD -MP -MF .deps/tif_write.Tpo -c tif_write.c  -fPIC -DPIC -o .libs/tif_write.o
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_write.lo -MD -MP -MF .deps/tif_write.Tpo -c tif_write.c -o tif_write.o >/dev/null 2>&1
+if /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT tif_zip.lo -MD -MP -MF ".deps/tif_zip.Tpo" -c -o tif_zip.lo tif_zip.c; \
+	then mv -f ".deps/tif_zip.Tpo" ".deps/tif_zip.Plo"; else rm -f ".deps/tif_zip.Tpo"; exit 1; fi
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_zip.lo -MD -MP -MF .deps/tif_zip.Tpo -c tif_zip.c  -fPIC -DPIC -o .libs/tif_zip.o
+ gcc -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -Wall -MT tif_zip.lo -MD -MP -MF .deps/tif_zip.Tpo -c tif_zip.c -o tif_zip.o >/dev/null 2>&1
+/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o libtiff.la -rpath /usr/local/lib -no-undefined -version-number 3:7:4  tif_aux.lo tif_close.lo tif_codec.lo tif_color.lo tif_compress.lo tif_dir.lo tif_dirinfo.lo tif_dirread.lo tif_dirwrite.lo tif_dumpmode.lo tif_error.lo tif_extension.lo tif_fax3.lo tif_fax3sm.lo tif_flush.lo tif_getimage.lo tif_jpeg.lo tif_luv.lo tif_lzw.lo tif_next.lo tif_ojpeg.lo tif_open.lo tif_packbits.lo tif_pixarlog.lo tif_predict.lo tif_print.lo tif_read.lo tif_strip.lo tif_swab.lo tif_thunder.lo tif_tile.lo tif_unix.lo tif_version.lo tif_warning.lo tif_write.lo tif_zip.lo ../port/libport.la -lm -lc 
+gcc -shared  .libs/tif_aux.o .libs/tif_close.o .libs/tif_codec.o .libs/tif_color.o .libs/tif_compress.o .libs/tif_dir.o .libs/tif_dirinfo.o .libs/tif_dirread.o .libs/tif_dirwrite.o .libs/tif_dumpmode.o .libs/tif_error.o .libs/tif_extension.o .libs/tif_fax3.o .libs/tif_fax3sm.o .libs/tif_flush.o .libs/tif_getimage.o .libs/tif_jpeg.o .libs/tif_luv.o .libs/tif_lzw.o .libs/tif_next.o .libs/tif_ojpeg.o .libs/tif_open.o .libs/tif_packbits.o .libs/tif_pixarlog.o .libs/tif_predict.o .libs/tif_print.o .libs/tif_read.o .libs/tif_strip.o .libs/tif_swab.o .libs/tif_thunder.o .libs/tif_tile.o .libs/tif_unix.o .libs/tif_version.o .libs/tif_warning.o .libs/tif_write.o .libs/tif_zip.o -Wl,--whole-archive ../port/.libs/libport.a -Wl,--no-whole-archive  -lm -lc  -m32 -m32 -Wl,-soname -Wl,libtiff.so.3 -o .libs/libtiff.so.3.7.4
+(cd .libs && rm -f libtiff.so.3 && ln -s libtiff.so.3.7.4 libtiff.so.3)
+(cd .libs && rm -f libtiff.so && ln -s libtiff.so.3.7.4 libtiff.so)
+rm -fr .libs/libtiff.lax
+mkdir .libs/libtiff.lax
+rm -fr .libs/libtiff.lax/libport.a
+mkdir .libs/libtiff.lax/libport.a
+(cd .libs/libtiff.lax/libport.a && ar x /experiment/src/libtiff/../port/.libs/libport.a)
+ar cru .libs/libtiff.a  tif_aux.o tif_close.o tif_codec.o tif_color.o tif_compress.o tif_dir.o tif_dirinfo.o tif_dirread.o tif_dirwrite.o tif_dumpmode.o tif_error.o tif_extension.o tif_fax3.o tif_fax3sm.o tif_flush.o tif_getimage.o tif_jpeg.o tif_luv.o tif_lzw.o tif_next.o tif_ojpeg.o tif_open.o tif_packbits.o tif_pixarlog.o tif_predict.o tif_print.o tif_read.o tif_strip.o tif_swab.o tif_thunder.o tif_tile.o tif_unix.o tif_version.o tif_warning.o tif_write.o tif_zip.o  .libs/libtiff.lax/libport.a/dummy.o 
+ranlib .libs/libtiff.a
+rm -fr .libs/libtiff.lax
+creating libtiff.la
+(cd .libs && rm -f libtiff.la && ln -s ../libtiff.la libtiff.la)
+if /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -MT tif_stream.lo -MD -MP -MF ".deps/tif_stream.Tpo" -c -o tif_stream.lo tif_stream.cxx; \
+	then mv -f ".deps/tif_stream.Tpo" ".deps/tif_stream.Plo"; else rm -f ".deps/tif_stream.Tpo"; exit 1; fi
+ g++ -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -MT tif_stream.lo -MD -MP -MF .deps/tif_stream.Tpo -c tif_stream.cxx  -fPIC -DPIC -o .libs/tif_stream.o
+In file included from tiffiop.h:61:0,
+                 from tif_stream.cxx:30:
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+ };
+ ^
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:533:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+ };
+ ^
+tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+tif_dir.h:602:1: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
+ g++ -DHAVE_CONFIG_H -I. -I. -I. -I. -m32 -MT tif_stream.lo -MD -MP -MF .deps/tif_stream.Tpo -c tif_stream.cxx -o tif_stream.o >/dev/null 2>&1
+/bin/sh ../libtool --tag=CXX --mode=link g++  -m32  -m32 -o libtiffxx.la -rpath /usr/local/lib -no-undefined -version-number 3:7:4  tif_stream.lo ../libtiff/libtiff.la ../port/libport.la -lm -lc 
+g++ -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib32/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.8/32/crtbeginS.o  .libs/tif_stream.o -Wl,--whole-archive ../port/.libs/libport.a -Wl,--no-whole-archive  -Wl,--rpath -Wl,/experiment/src/libtiff/.libs ../libtiff/.libs/libtiff.so -L/usr/lib/gcc/x86_64-linux-gnu/4.8/32 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib32 -L/lib/../lib32 -L/usr/lib/../lib32 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.8/32/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib32/crtn.o  -m32 -m32 -Wl,-soname -Wl,libtiffxx.so.3 -o .libs/libtiffxx.so.3.7.4
+(cd .libs && rm -f libtiffxx.so.3 && ln -s libtiffxx.so.3.7.4 libtiffxx.so.3)
+(cd .libs && rm -f libtiffxx.so && ln -s libtiffxx.so.3.7.4 libtiffxx.so)
+rm -fr .libs/libtiffxx.lax
+mkdir .libs/libtiffxx.lax
+rm -fr .libs/libtiffxx.lax/libport.a
+mkdir .libs/libtiffxx.lax/libport.a
+(cd .libs/libtiffxx.lax/libport.a && ar x /experiment/src/libtiff/../port/.libs/libport.a)
+ar cru .libs/libtiffxx.a  tif_stream.o  .libs/libtiffxx.lax/libport.a/dummy.o 
+ranlib .libs/libtiffxx.a
+rm -fr .libs/libtiffxx.lax
+creating libtiffxx.la
+(cd .libs && rm -f libtiffxx.la && ln -s ../libtiffxx.la libtiffxx.la)
+if gcc -DHAVE_CONFIG_H -I. -I. -I. -I.     -m32 -Wall -MT mkg3states.o -MD -MP -MF ".deps/mkg3states.Tpo" -c -o mkg3states.o mkg3states.c; \
+	then mv -f ".deps/mkg3states.Tpo" ".deps/mkg3states.Po"; else rm -f ".deps/mkg3states.Tpo"; exit 1; fi
+/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o mkg3states  mkg3states.o ../port/libport.la -lm -lc 
+gcc -m32 -Wall -m32 -o mkg3states mkg3states.o  ../port/.libs/libport.a -lm -lc
+make[2]: Leaving directory `/experiment/src/libtiff'
+make[1]: Leaving directory `/experiment/src/libtiff'
+Making all in tools
+make[1]: Entering directory `/experiment/src/tools'
+if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT bmp2tiff.o -MD -MP -MF ".deps/bmp2tiff.Tpo" -c -o bmp2tiff.o bmp2tiff.c; \
+	then mv -f ".deps/bmp2tiff.Tpo" ".deps/bmp2tiff.Po"; else rm -f ".deps/bmp2tiff.Tpo"; exit 1; fi
+/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o bmp2tiff  bmp2tiff.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
+mkdir .libs
+gcc -m32 -Wall -m32 -o .libs/bmp2tiff bmp2tiff.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
+creating bmp2tiff
+if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT fax2ps.o -MD -MP -MF ".deps/fax2ps.Tpo" -c -o fax2ps.o fax2ps.c; \
+	then mv -f ".deps/fax2ps.Tpo" ".deps/fax2ps.Po"; else rm -f ".deps/fax2ps.Tpo"; exit 1; fi
+/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o fax2ps  fax2ps.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
+gcc -m32 -Wall -m32 -o .libs/fax2ps fax2ps.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
+creating fax2ps
+if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT fax2tiff.o -MD -MP -MF ".deps/fax2tiff.Tpo" -c -o fax2tiff.o fax2tiff.c; \
+	then mv -f ".deps/fax2tiff.Tpo" ".deps/fax2tiff.Po"; else rm -f ".deps/fax2tiff.Tpo"; exit 1; fi
+/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o fax2tiff  fax2tiff.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
+gcc -m32 -Wall -m32 -o .libs/fax2tiff fax2tiff.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
+creating fax2tiff
+if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT gif2tiff.o -MD -MP -MF ".deps/gif2tiff.Tpo" -c -o gif2tiff.o gif2tiff.c; \
+	then mv -f ".deps/gif2tiff.Tpo" ".deps/gif2tiff.Po"; else rm -f ".deps/gif2tiff.Tpo"; exit 1; fi
+/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o gif2tiff  gif2tiff.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
+gcc -m32 -Wall -m32 -o .libs/gif2tiff gif2tiff.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
+creating gif2tiff
+if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT pal2rgb.o -MD -MP -MF ".deps/pal2rgb.Tpo" -c -o pal2rgb.o pal2rgb.c; \
+	then mv -f ".deps/pal2rgb.Tpo" ".deps/pal2rgb.Po"; else rm -f ".deps/pal2rgb.Tpo"; exit 1; fi
+/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o pal2rgb  pal2rgb.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
+gcc -m32 -Wall -m32 -o .libs/pal2rgb pal2rgb.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
+creating pal2rgb
+if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT ppm2tiff.o -MD -MP -MF ".deps/ppm2tiff.Tpo" -c -o ppm2tiff.o ppm2tiff.c; \
+	then mv -f ".deps/ppm2tiff.Tpo" ".deps/ppm2tiff.Po"; else rm -f ".deps/ppm2tiff.Tpo"; exit 1; fi
+/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o ppm2tiff  ppm2tiff.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
+gcc -m32 -Wall -m32 -o .libs/ppm2tiff ppm2tiff.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
+creating ppm2tiff
+if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT ras2tiff.o -MD -MP -MF ".deps/ras2tiff.Tpo" -c -o ras2tiff.o ras2tiff.c; \
+	then mv -f ".deps/ras2tiff.Tpo" ".deps/ras2tiff.Po"; else rm -f ".deps/ras2tiff.Tpo"; exit 1; fi
+/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o ras2tiff  ras2tiff.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
+gcc -m32 -Wall -m32 -o .libs/ras2tiff ras2tiff.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
+creating ras2tiff
+if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT raw2tiff.o -MD -MP -MF ".deps/raw2tiff.Tpo" -c -o raw2tiff.o raw2tiff.c; \
+	then mv -f ".deps/raw2tiff.Tpo" ".deps/raw2tiff.Po"; else rm -f ".deps/raw2tiff.Tpo"; exit 1; fi
+/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o raw2tiff  raw2tiff.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
+gcc -m32 -Wall -m32 -o .libs/raw2tiff raw2tiff.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
+creating raw2tiff
+if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT rgb2ycbcr.o -MD -MP -MF ".deps/rgb2ycbcr.Tpo" -c -o rgb2ycbcr.o rgb2ycbcr.c; \
+	then mv -f ".deps/rgb2ycbcr.Tpo" ".deps/rgb2ycbcr.Po"; else rm -f ".deps/rgb2ycbcr.Tpo"; exit 1; fi
+/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o rgb2ycbcr  rgb2ycbcr.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
+gcc -m32 -Wall -m32 -o .libs/rgb2ycbcr rgb2ycbcr.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
+creating rgb2ycbcr
+if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT thumbnail.o -MD -MP -MF ".deps/thumbnail.Tpo" -c -o thumbnail.o thumbnail.c; \
+	then mv -f ".deps/thumbnail.Tpo" ".deps/thumbnail.Po"; else rm -f ".deps/thumbnail.Tpo"; exit 1; fi
+/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o thumbnail  thumbnail.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
+gcc -m32 -Wall -m32 -o .libs/thumbnail thumbnail.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
+creating thumbnail
+if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT tiff2bw.o -MD -MP -MF ".deps/tiff2bw.Tpo" -c -o tiff2bw.o tiff2bw.c; \
+	then mv -f ".deps/tiff2bw.Tpo" ".deps/tiff2bw.Po"; else rm -f ".deps/tiff2bw.Tpo"; exit 1; fi
+/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o tiff2bw  tiff2bw.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
+gcc -m32 -Wall -m32 -o .libs/tiff2bw tiff2bw.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
+creating tiff2bw
+if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT tiff2pdf.o -MD -MP -MF ".deps/tiff2pdf.Tpo" -c -o tiff2pdf.o tiff2pdf.c; \
+	then mv -f ".deps/tiff2pdf.Tpo" ".deps/tiff2pdf.Po"; else rm -f ".deps/tiff2pdf.Tpo"; exit 1; fi
+tiff2pdf.c: In function 'main':
+tiff2pdf.c:528:10: warning: variable 'written' set but not used [-Wunused-but-set-variable]
+  tsize_t written=0;
+          ^
+tiff2pdf.c: In function 't2p_readwrite_pdf_image_tile':
+tiff2pdf.c:2675:10: warning: variable 'tilesize' set but not used [-Wunused-but-set-variable]
+  tsize_t tilesize=0;
+          ^
+tiff2pdf.c: In function 't2p_write_pdf_info':
+tiff2pdf.c:3947:6: warning: variable 'buflen' set but not used [-Wunused-but-set-variable]
+  int buflen=0;
+      ^
+/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o tiff2pdf  tiff2pdf.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
+gcc -m32 -Wall -m32 -o .libs/tiff2pdf tiff2pdf.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
+creating tiff2pdf
+if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT tiff2ps.o -MD -MP -MF ".deps/tiff2ps.Tpo" -c -o tiff2ps.o tiff2ps.c; \
+	then mv -f ".deps/tiff2ps.Tpo" ".deps/tiff2ps.Po"; else rm -f ".deps/tiff2ps.Tpo"; exit 1; fi
+/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o tiff2ps  tiff2ps.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
+gcc -m32 -Wall -m32 -o .libs/tiff2ps tiff2ps.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
+creating tiff2ps
+if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT tiff2rgba.o -MD -MP -MF ".deps/tiff2rgba.Tpo" -c -o tiff2rgba.o tiff2rgba.c; \
+	then mv -f ".deps/tiff2rgba.Tpo" ".deps/tiff2rgba.Po"; else rm -f ".deps/tiff2rgba.Tpo"; exit 1; fi
+/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o tiff2rgba  tiff2rgba.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
+gcc -m32 -Wall -m32 -o .libs/tiff2rgba tiff2rgba.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
+creating tiff2rgba
+if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT tiffcmp.o -MD -MP -MF ".deps/tiffcmp.Tpo" -c -o tiffcmp.o tiffcmp.c; \
+	then mv -f ".deps/tiffcmp.Tpo" ".deps/tiffcmp.Po"; else rm -f ".deps/tiffcmp.Tpo"; exit 1; fi
+tiffcmp.c: In function 'CheckLongTag':
+tiffcmp.c:605:2: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'uint32' [-Wformat=]
+  CHECK(v1 == v2, "%s: %lu %lu\n");
+  ^
+tiffcmp.c:605:2: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'uint32' [-Wformat=]
+/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o tiffcmp  tiffcmp.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
+gcc -m32 -Wall -m32 -o .libs/tiffcmp tiffcmp.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
+creating tiffcmp
+if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT tiffcp.o -MD -MP -MF ".deps/tiffcp.Tpo" -c -o tiffcp.o tiffcp.c; \
+	then mv -f ".deps/tiffcp.Tpo" ".deps/tiffcp.Po"; else rm -f ".deps/tiffcp.Tpo"; exit 1; fi
+/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o tiffcp  tiffcp.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
+gcc -m32 -Wall -m32 -o .libs/tiffcp tiffcp.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
+creating tiffcp
+if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT tiffdither.o -MD -MP -MF ".deps/tiffdither.Tpo" -c -o tiffdither.o tiffdither.c; \
+	then mv -f ".deps/tiffdither.Tpo" ".deps/tiffdither.Po"; else rm -f ".deps/tiffdither.Tpo"; exit 1; fi
+/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o tiffdither  tiffdither.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
+gcc -m32 -Wall -m32 -o .libs/tiffdither tiffdither.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
+creating tiffdither
+if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT tiffdump.o -MD -MP -MF ".deps/tiffdump.Tpo" -c -o tiffdump.o tiffdump.c; \
+	then mv -f ".deps/tiffdump.Tpo" ".deps/tiffdump.Po"; else rm -f ".deps/tiffdump.Tpo"; exit 1; fi
+/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o tiffdump  tiffdump.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
+gcc -m32 -Wall -m32 -o .libs/tiffdump tiffdump.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
+creating tiffdump
+if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT tiffinfo.o -MD -MP -MF ".deps/tiffinfo.Tpo" -c -o tiffinfo.o tiffinfo.c; \
+	then mv -f ".deps/tiffinfo.Tpo" ".deps/tiffinfo.Po"; else rm -f ".deps/tiffinfo.Tpo"; exit 1; fi
+/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o tiffinfo  tiffinfo.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
+gcc -m32 -Wall -m32 -o .libs/tiffinfo tiffinfo.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
+creating tiffinfo
+if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT tiffmedian.o -MD -MP -MF ".deps/tiffmedian.Tpo" -c -o tiffmedian.o tiffmedian.c; \
+	then mv -f ".deps/tiffmedian.Tpo" ".deps/tiffmedian.Po"; else rm -f ".deps/tiffmedian.Tpo"; exit 1; fi
+/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o tiffmedian  tiffmedian.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
+gcc -m32 -Wall -m32 -o .libs/tiffmedian tiffmedian.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
+creating tiffmedian
+if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT tiffset.o -MD -MP -MF ".deps/tiffset.Tpo" -c -o tiffset.o tiffset.c; \
+	then mv -f ".deps/tiffset.Tpo" ".deps/tiffset.Po"; else rm -f ".deps/tiffset.Tpo"; exit 1; fi
+/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o tiffset  tiffset.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
+gcc -m32 -Wall -m32 -o .libs/tiffset tiffset.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
+creating tiffset
+if gcc -DHAVE_CONFIG_H -I. -I. -I../libtiff -I../libtiff -I../libtiff    -m32 -Wall -MT tiffsplit.o -MD -MP -MF ".deps/tiffsplit.Tpo" -c -o tiffsplit.o tiffsplit.c; \
+	then mv -f ".deps/tiffsplit.Tpo" ".deps/tiffsplit.Po"; else rm -f ".deps/tiffsplit.Tpo"; exit 1; fi
+/bin/sh ../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o tiffsplit  tiffsplit.o ../libtiff/libtiff.la ../port/libport.la -lm -lc 
+gcc -m32 -Wall -m32 -o .libs/tiffsplit tiffsplit.o  ../libtiff/.libs/libtiff.so ../port/.libs/libport.a -lm -lc
+creating tiffsplit
+make[1]: Leaving directory `/experiment/src/tools'
+Making all in contrib
+make[1]: Entering directory `/experiment/src/contrib'
+Making all in acorn
+make[2]: Entering directory `/experiment/src/contrib/acorn'
+make[2]: Nothing to be done for `all'.
+make[2]: Leaving directory `/experiment/src/contrib/acorn'
+Making all in addtiffo
+make[2]: Entering directory `/experiment/src/contrib/addtiffo'
+if gcc -DHAVE_CONFIG_H -I. -I. -I../../libtiff -I../../libtiff -I../../libtiff    -m32 -Wall -MT addtiffo.o -MD -MP -MF ".deps/addtiffo.Tpo" -c -o addtiffo.o addtiffo.c; \
+	then mv -f ".deps/addtiffo.Tpo" ".deps/addtiffo.Po"; else rm -f ".deps/addtiffo.Tpo"; exit 1; fi
+if gcc -DHAVE_CONFIG_H -I. -I. -I../../libtiff -I../../libtiff -I../../libtiff    -m32 -Wall -MT tif_overview.o -MD -MP -MF ".deps/tif_overview.Tpo" -c -o tif_overview.o tif_overview.c; \
+	then mv -f ".deps/tif_overview.Tpo" ".deps/tif_overview.Po"; else rm -f ".deps/tif_overview.Tpo"; exit 1; fi
+if gcc -DHAVE_CONFIG_H -I. -I. -I../../libtiff -I../../libtiff -I../../libtiff    -m32 -Wall -MT tif_ovrcache.o -MD -MP -MF ".deps/tif_ovrcache.Tpo" -c -o tif_ovrcache.o tif_ovrcache.c; \
+	then mv -f ".deps/tif_ovrcache.Tpo" ".deps/tif_ovrcache.Po"; else rm -f ".deps/tif_ovrcache.Tpo"; exit 1; fi
+/bin/sh ../../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o addtiffo  addtiffo.o tif_overview.o tif_ovrcache.o ../../libtiff/libtiff.la -lm -lc 
+mkdir .libs
+gcc -m32 -Wall -m32 -o .libs/addtiffo addtiffo.o tif_overview.o tif_ovrcache.o  ../../libtiff/.libs/libtiff.so -lm -lc
+creating addtiffo
+make[2]: Leaving directory `/experiment/src/contrib/addtiffo'
+Making all in dbs
+make[2]: Entering directory `/experiment/src/contrib/dbs'
+Making all in xtiff
+make[3]: Entering directory `/experiment/src/contrib/dbs/xtiff'
+make[3]: Nothing to be done for `all'.
+make[3]: Leaving directory `/experiment/src/contrib/dbs/xtiff'
+make[3]: Entering directory `/experiment/src/contrib/dbs'
+if gcc -DHAVE_CONFIG_H -I. -I. -I../../libtiff -I../../libtiff -I../../libtiff    -m32 -Wall -MT tiff-bi.o -MD -MP -MF ".deps/tiff-bi.Tpo" -c -o tiff-bi.o tiff-bi.c; \
+	then mv -f ".deps/tiff-bi.Tpo" ".deps/tiff-bi.Po"; else rm -f ".deps/tiff-bi.Tpo"; exit 1; fi
+/bin/sh ../../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o tiff-bi  tiff-bi.o ../../libtiff/libtiff.la -lm -lc 
+mkdir .libs
+gcc -m32 -Wall -m32 -o .libs/tiff-bi tiff-bi.o  ../../libtiff/.libs/libtiff.so -lm -lc
+creating tiff-bi
+if gcc -DHAVE_CONFIG_H -I. -I. -I../../libtiff -I../../libtiff -I../../libtiff    -m32 -Wall -MT tiff-grayscale.o -MD -MP -MF ".deps/tiff-grayscale.Tpo" -c -o tiff-grayscale.o tiff-grayscale.c; \
+	then mv -f ".deps/tiff-grayscale.Tpo" ".deps/tiff-grayscale.Po"; else rm -f ".deps/tiff-grayscale.Tpo"; exit 1; fi
+/bin/sh ../../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o tiff-grayscale  tiff-grayscale.o ../../libtiff/libtiff.la -lm -lc 
+gcc -m32 -Wall -m32 -o .libs/tiff-grayscale tiff-grayscale.o  ../../libtiff/.libs/libtiff.so -lm -lc
+creating tiff-grayscale
+if gcc -DHAVE_CONFIG_H -I. -I. -I../../libtiff -I../../libtiff -I../../libtiff    -m32 -Wall -MT tiff-palette.o -MD -MP -MF ".deps/tiff-palette.Tpo" -c -o tiff-palette.o tiff-palette.c; \
+	then mv -f ".deps/tiff-palette.Tpo" ".deps/tiff-palette.Po"; else rm -f ".deps/tiff-palette.Tpo"; exit 1; fi
+/bin/sh ../../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o tiff-palette  tiff-palette.o ../../libtiff/libtiff.la -lm -lc 
+gcc -m32 -Wall -m32 -o .libs/tiff-palette tiff-palette.o  ../../libtiff/.libs/libtiff.so -lm -lc
+creating tiff-palette
+if gcc -DHAVE_CONFIG_H -I. -I. -I../../libtiff -I../../libtiff -I../../libtiff    -m32 -Wall -MT tiff-rgb.o -MD -MP -MF ".deps/tiff-rgb.Tpo" -c -o tiff-rgb.o tiff-rgb.c; \
+	then mv -f ".deps/tiff-rgb.Tpo" ".deps/tiff-rgb.Po"; else rm -f ".deps/tiff-rgb.Tpo"; exit 1; fi
+/bin/sh ../../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o tiff-rgb  tiff-rgb.o ../../libtiff/libtiff.la -lm -lc 
+gcc -m32 -Wall -m32 -o .libs/tiff-rgb tiff-rgb.o  ../../libtiff/.libs/libtiff.so -lm -lc
+creating tiff-rgb
+make[3]: Leaving directory `/experiment/src/contrib/dbs'
+make[2]: Leaving directory `/experiment/src/contrib/dbs'
+Making all in iptcutil
+make[2]: Entering directory `/experiment/src/contrib/iptcutil'
+if gcc -DHAVE_CONFIG_H -I. -I. -I../../libtiff -I../../libtiff -I../../libtiff    -m32 -Wall -MT iptcutil.o -MD -MP -MF ".deps/iptcutil.Tpo" -c -o iptcutil.o iptcutil.c; \
+	then mv -f ".deps/iptcutil.Tpo" ".deps/iptcutil.Po"; else rm -f ".deps/iptcutil.Tpo"; exit 1; fi
+iptcutil.c: In function 'main':
+iptcutil.c:388:7: warning: format not a string literal and no format arguments [-Wformat-security]
+       printf(usage);
+       ^
+iptcutil.c:447:9: warning: format not a string literal and no format arguments [-Wformat-security]
+         printf(usage);
+         ^
+iptcutil.c:372:6: warning: variable 'buffer' set but not used [-Wunused-but-set-variable]
+     *buffer;
+      ^
+iptcutil.c:369:5: warning: variable 'length' set but not used [-Wunused-but-set-variable]
+     length;
+     ^
+/bin/sh ../../libtool --tag=CC --mode=link gcc  -m32 -Wall  -m32 -o iptcutil  iptcutil.o ../../libtiff/libtiff.la -lm -lc 
+mkdir .libs
+gcc -m32 -Wall -m32 -o .libs/iptcutil iptcutil.o  ../../libtiff/.libs/libtiff.so -lm -lc
+creating iptcutil
+make[2]: Leaving directory `/experiment/src/contrib/iptcutil'
+Making all in mac-cw
+make[2]: Entering directory `/experiment/src/contrib/mac-cw'
+make[2]: Nothing to be done for `all'.
+make[2]: Leaving directory `/experiment/src/contrib/mac-cw'
+Making all in mac-mpw
+make[2]: Entering directory `/experiment/src/contrib/mac-mpw'
+make[2]: Nothing to be done for `all'.
+make[2]: Leaving directory `/experiment/src/contrib/mac-mpw'
+Making all in mfs
+make[2]: Entering directory `/experiment/src/contrib/mfs'
+make[2]: Nothing to be done for `all'.
+make[2]: Leaving directory `/experiment/src/contrib/mfs'
+Making all in ojpeg
+make[2]: Entering directory `/experiment/src/contrib/ojpeg'
+make[2]: Nothing to be done for `all'.
+make[2]: Leaving directory `/experiment/src/contrib/ojpeg'
+Making all in pds
+make[2]: Entering directory `/experiment/src/contrib/pds'
+make[2]: Nothing to be done for `all'.
+make[2]: Leaving directory `/experiment/src/contrib/pds'
+Making all in ras
+make[2]: Entering directory `/experiment/src/contrib/ras'
+make[2]: Nothing to be done for `all'.
+make[2]: Leaving directory `/experiment/src/contrib/ras'
+Making all in stream
+make[2]: Entering directory `/experiment/src/contrib/stream'
+make[2]: Nothing to be done for `all'.
+make[2]: Leaving directory `/experiment/src/contrib/stream'
+Making all in tags
+make[2]: Entering directory `/experiment/src/contrib/tags'
+make[2]: Nothing to be done for `all'.
+make[2]: Leaving directory `/experiment/src/contrib/tags'
+Making all in win_dib
+make[2]: Entering directory `/experiment/src/contrib/win_dib'
+make[2]: Nothing to be done for `all'.
+make[2]: Leaving directory `/experiment/src/contrib/win_dib'
+make[2]: Entering directory `/experiment/src/contrib'
+make[2]: Nothing to be done for `all-am'.
+make[2]: Leaving directory `/experiment/src/contrib'
+make[1]: Leaving directory `/experiment/src/contrib'
+Making all in test
+make[1]: Entering directory `/experiment/src/test'
+make[1]: Nothing to be done for `all'.
+make[1]: Leaving directory `/experiment/src/test'
+Making all in man
+make[1]: Entering directory `/experiment/src/man'
+make[1]: Nothing to be done for `all'.
+make[1]: Leaving directory `/experiment/src/man'
+Making all in html
+make[1]: Entering directory `/experiment/src/html'
+Making all in images
+make[2]: Entering directory `/experiment/src/html/images'
+make[2]: Nothing to be done for `all'.
+make[2]: Leaving directory `/experiment/src/html/images'
+Making all in man
+make[2]: Entering directory `/experiment/src/html/man'
+make[2]: Nothing to be done for `all'.
+make[2]: Leaving directory `/experiment/src/html/man'
+make[2]: Entering directory `/experiment/src/html'
+make[2]: Nothing to be done for `all-am'.
+make[2]: Leaving directory `/experiment/src/html'
+make[1]: Leaving directory `/experiment/src/html'
+make[1]: Entering directory `/experiment/src'
+make[1]: Nothing to be done for `all-am'.
+make[1]: Leaving directory `/experiment/src'

python/data/tests-list/lighttpd/README.md

@@ -0,0 +1,27 @@
+## Running `lighttpd` bugs
+
+After running the container you need to follow the following
+steps to prepare `SOSRepair` for running:
+
+1. Copy `makeout`, `compile.sh`, `test.sh` and `tests-list` to
+the container's `/experiment/`.
+2. Copy `settings.py` to the container's `/opt/sosrepair/sosrepair`.
+3. In the container, reconfigure the project with coverage flags:
+```
+cd /experiment/src
+./configure "CFLAGS=-fprofile-arcs -ftest-coverage" "CXXFLAGS=-fprofile-arcs -ftest-coverage" "LDFLAGS=-lgcov" --with-ldap --with-bzip2 --with-openssl --with-gdbm --with-memcache --with-webdav-props --with-webdav-locks
+make clean
+make
+```
+4. Run `/opt/sosrepair/prepare/setup.sh`.
+5. Set proper permissions by running `sudo chmod -R 777 /opt/sosrepair/sosrepair`.
+6. Setup environment variables:
+```
+export PYTHONPATH="/opt/sosrepair/bindings:${PYTHONPATH}"
+export CPATH=":/opt/sosrepair/include"
+export PATH="/opt/sosrepair/bin:$PATH"
+```
+
+Pay attention that `lighttpd` tests occupy a single port. Therefore, you can only
+run on a single bug at a time if you're sharing ports. Otherwise, the tests will
+fail.

python/data/tests-list/lighttpd/compile.sh

@@ -0,0 +1,8 @@
+#!/bin/bash
+DIR=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
+
+cd $DIR/src
+#make clean
+(make && exit 0)|| exit 1
+
+

python/data/tests-list/lighttpd/copy.sh

@@ -0,0 +1,10 @@
+#!/bin/bash
+
+
+CONTAINER=$1
+BUG=$2
+
+docker cp compile.sh $CONTAINER:/experiment/
+docker cp $BUG/test.sh $CONTAINER:/experiment/
+docker cp $BUG/tests-list.txt $CONTAINER:/experiment/
+docker cp $BUG/settings.py $CONTAINER:/opt/sosrepair/sosrepair/

python/data/tests-list/lighttpd/lighttpd-bug-1913-1914/settings.py

@@ -0,0 +1,86 @@
+"""
+This file includes all the settings that could be modified for running SearchRepair/SOSRepair
+
+* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
+* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
+ DB
+* Z3_COMMAND: The z3 command on this machine.
+* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
+* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
+* DATABASE: Information about the database.
+* LOGGING: Settings for logging.
+* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
+* VALID_TYPES: The variable types that are right now supported by SR.
+------ Settings related to file under repair -------
+* TESTS_LIST: The path to a list of the tests that could be run on the file
+* TEST_SCRIPT: The path to a script that will run the test
+* COMPILE_SCRIPT: The path to a script that will compile the code
+* FAULTY_CODE: The path to the faulty code (a C file)
+* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
+* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
+automatically)
+* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
+* SOSREPAIR: If set to False it will only run SearchRepair features
+* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
+* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
+"""
+__author__ = 'Afsoon Afzal'
+
+import logging
+
+
+LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
+
+GENERATE_DB_PATH = '/experiment/src'
+
+Z3_COMMAND = '/opt/sosrepair/bin/z3'
+
+LARGEST_SNIPPET = 7
+SMALLEST_SNIPPET = 3
+
+DATABASE = {
+    'db_name': 'testdocker',
+    'user': 'docker',
+    'password': '1234',
+}
+
+LOGGING = {
+    'filename': 'logs/repair.log',
+    'level': logging.DEBUG
+}
+
+logging.basicConfig(**LOGGING)
+
+MAX_SUSPICIOUS_LINES = 10
+
+VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
+
+TESTS_LIST = "/experiment/tests-list.txt"
+TEST_SCRIPT = "/experiment/test.sh"
+TEST_SCRIPT_TYPE = "/bin/bash"
+COMPILE_SCRIPT = "/experiment/compile.sh"
+FAULTY_CODE = "/experiment/src/src/mod_cgi.c"
+
+
+COMPILE_EXTRA_ARGS = [
+                    "-I/experiment/src",
+#                    "-I/usr/include",
+                    "-I/usr/include/glib-2.0",
+                    "-I/usr/lib/x86_64-linux-gnu/glib-2.0/include",
+                    "-I/opt/sosrepair/llvm/lib/clang/5.0.2/include"
+]
+
+MAKE_OUTPUT = "/experiment/makeout"
+
+METHOD_RANGE = (584, 918)
+# IF SOS+
+# METHOD_RANGE = (747, 749)
+
+SOSREPAIR = True
+
+NUMBER_OF_TIMES_RERUNNING_TESTS = 1
+EXCLUDE_SCANF = False
+
+BULK_RUN_PATH = ""
+
+GCOV_OBJECTS = "/experiment/src/src/.libs"

python/data/tests-list/lighttpd/lighttpd-bug-1913-1914/test.sh

@@ -0,0 +1,52 @@
+#!/bin/bash
+bugrev=1913
+dir=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd ) 
+
+#Check if coverage is being run. If so, don't use time limit.
+#if [ `basename $2` = "coverage" ] ; then
+#    cov=0
+#else
+cov=0
+#fi
+
+run_test()
+{
+    cd $dir/src/tests
+    if [ $cov -eq 0 ] ; then
+        perl /experiment/lighttpd-run-tests.pl $1
+    else
+        timeout 5 perl /experiment/lighttpd-run-tests.pl $1
+    fi
+    RESULT=$?
+    if [ $RESULT = 0 ] ; then 
+	echo ""
+	echo "PASS"
+    else
+	echo ""
+	echo "FAIL"
+    fi
+    killall -9 lighttpd &> /dev/null
+    cd ../../
+    return 0
+}
+case $1 in
+    p1) run_test 1 && exit 0 ;; 
+    p2) run_test 2 && exit 0 ;; 
+    p3) run_test 3 && exit 0 ;; 
+    p4) run_test 4 && exit 0 ;; 
+    p5) run_test 6 && exit 0 ;; 
+    p6) run_test 7 && exit 0 ;; 
+    p7) run_test 8 && exit 0 ;; 
+    p8) run_test 10 && exit 0 ;; 
+    p9) run_test 11 && exit 0 ;; 
+    p10) run_test 12 && exit 0 ;; 
+    p11) run_test 14 && exit 0 ;; 
+    p12) run_test 15 && exit 0 ;; 
+    p13) run_test 16 && exit 0 ;; 
+    p14) run_test 17 && exit 0 ;; 
+    p15) run_test 18 && exit 0 ;; 
+    p16) run_test 20 && exit 0 ;; 
+    p17) run_test 21 && exit 0 ;; 
+    n1) run_test 9 && exit 0 ;; 
+esac
+exit 1

python/data/tests-list/lighttpd/lighttpd-bug-1913-1914/tests-list.txt

@@ -0,0 +1,17 @@
+n1
+p1
+p2
+p3
+p4
+p5
+p6
+p7
+p8
+p9
+p10
+p12
+p13
+p14
+p15
+p16
+p17

python/data/tests-list/lighttpd/lighttpd-bug-1948-1949/settings.py

@@ -0,0 +1,82 @@
+"""
+This file includes all the settings that could be modified for running SearchRepair/SOSRepair
+
+* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
+* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
+ DB
+* Z3_COMMAND: The z3 command on this machine.
+* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
+* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
+* DATABASE: Information about the database.
+* LOGGING: Settings for logging.
+* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
+* VALID_TYPES: The variable types that are right now supported by SR.
+------ Settings related to file under repair -------
+* TESTS_LIST: The path to a list of the tests that could be run on the file
+* TEST_SCRIPT: The path to a script that will run the test
+* COMPILE_SCRIPT: The path to a script that will compile the code
+* FAULTY_CODE: The path to the faulty code (a C file)
+* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
+* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
+automatically)
+* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
+* SOSREPAIR: If set to False it will only run SearchRepair features
+* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
+* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
+"""
+__author__ = 'Afsoon Afzal'
+
+import logging
+
+
+LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
+
+GENERATE_DB_PATH = '/experiment/src'
+
+Z3_COMMAND = '/opt/sosrepair/bin/z3'
+
+LARGEST_SNIPPET = 7
+SMALLEST_SNIPPET = 3
+
+DATABASE = {
+    'db_name': 'testdocker',
+    'user': 'docker',
+    'password': '1234'
+}
+
+LOGGING = {
+    'filename': 'logs/repair.log',
+    'level': logging.DEBUG
+}
+
+logging.basicConfig(**LOGGING)
+
+MAX_SUSPICIOUS_LINES = 10
+
+VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
+
+TESTS_LIST = "/experiment/tests-list.txt"
+TEST_SCRIPT = "/experiment/test.sh"
+TEST_SCRIPT_TYPE = "/bin/bash"
+COMPILE_SCRIPT = "/experiment/compile.sh"
+FAULTY_CODE = "/experiment/src/src/response.c"
+
+
+COMPILE_EXTRA_ARGS = [
+                    "-I/experiment/src",
+#                    "-I/usr/include",
+                    "-I/usr/include/glib-2.0",
+                    "-I/usr/lib/x86_64-linux-gnu/glib-2.0/include",
+                    "-I/opt/sosrepair/llvm/lib/clang/5.0.2/include"
+]
+
+MAKE_OUTPUT = "/experiment/makeout"
+
+METHOD_RANGE = (32, 134)
+
+SOSREPAIR = True
+
+NUMBER_OF_TIMES_RERUNNING_TESTS = 1
+EXCLUDE_SCANF = False
+
+BULK_RUN_PATH = ""

python/data/tests-list/lighttpd/lighttpd-bug-1948-1949/test.sh

@@ -0,0 +1,39 @@
+#!/bin/bash
+bugrev=1948
+dir=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
+run_test()
+{
+    cd $dir/src/tests
+    perl ../../lighttpd-run-tests.pl $1
+    if [ $? = 0 ] ; then
+        echo ""
+        echo "PASS"
+    else
+        echo ""
+        echo "FAIL"
+    fi
+    popd > /dev/null
+    killall -9 lighttpd &> /dev/null
+    return 0
+}
+case $1 in
+    p1) run_test 1 && exit 0 ;; 
+    p2) run_test 2 && exit 0 ;; 
+    p3) run_test 3 && exit 0 ;; 
+    p4) run_test 4 && exit 0 ;; 
+    p5) run_test 6 && exit 0 ;; 
+    p6) run_test 7 && exit 0 ;; 
+    p7) run_test 8 && exit 0 ;; 
+    p8) run_test 10 && exit 0 ;; 
+    p9) run_test 11 && exit 0 ;; 
+    p10) run_test 12 && exit 0 ;; 
+    p11) run_test 14 && exit 0 ;; 
+    p12) run_test 15 && exit 0 ;; 
+    p13) run_test 16 && exit 0 ;; 
+    p14) run_test 17 && exit 0 ;; 
+    p15) run_test 18 && exit 0 ;; 
+    p16) run_test 20 && exit 0 ;; 
+    p17) run_test 21 && exit 0 ;; 
+    n1) run_test 19 && exit 0 ;; 
+esac
+exit 1

python/data/tests-list/lighttpd/lighttpd-bug-1948-1949/tests-list.txt

@@ -0,0 +1,14 @@
+n1
+p1
+p2
+p3
+p4
+p5
+p6
+p7
+p8
+p10
+p11
+p13
+p14
+p15

python/data/tests-list/lighttpd/lighttpd-bug-2254-2259/settings.py

@@ -0,0 +1,86 @@
+"""
+This file includes all the settings that could be modified for running SearchRepair/SOSRepair
+
+* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
+* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
+ DB
+* Z3_COMMAND: The z3 command on this machine.
+* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
+* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
+* DATABASE: Information about the database.
+* LOGGING: Settings for logging.
+* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
+* VALID_TYPES: The variable types that are right now supported by SR.
+------ Settings related to file under repair -------
+* TESTS_LIST: The path to a list of the tests that could be run on the file
+* TEST_SCRIPT: The path to a script that will run the test
+* COMPILE_SCRIPT: The path to a script that will compile the code
+* FAULTY_CODE: The path to the faulty code (a C file)
+* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
+* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
+automatically)
+* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
+* SOSREPAIR: If set to False it will only run SearchRepair features
+* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
+* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
+"""
+__author__ = 'Afsoon Afzal'
+
+import logging
+
+
+LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
+
+GENERATE_DB_PATH = '/experiment/src'
+
+Z3_COMMAND = '/opt/sosrepair/bin/z3'
+
+LARGEST_SNIPPET = 7
+SMALLEST_SNIPPET = 3
+
+DATABASE = {
+    'db_name': 'testdocker',
+    'user': 'docker',
+    'password': '1234'
+}
+
+LOGGING = {
+    'filename': 'logs/repair.log',
+    'level': logging.DEBUG
+}
+
+logging.basicConfig(**LOGGING)
+
+MAX_SUSPICIOUS_LINES = 10
+
+VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
+
+TESTS_LIST = "/experiment/tests-list.txt"
+TEST_SCRIPT = "/experiment/test.sh"
+TEST_SCRIPT_TYPE = "/bin/bash"
+COMPILE_SCRIPT = "/experiment/compile.sh"
+FAULTY_CODE = "/experiment/src/src/mod_secure_download.c"
+
+
+COMPILE_EXTRA_ARGS = [ 
+                    "-I/experiment/src",
+#                    "-I/usr/include",
+                    "-I/usr/include/glib-2.0",
+                    "-I/usr/lib/x86_64-linux-gnu/glib-2.0/include",
+                    "-I/opt/sosrepair/llvm/lib/clang/5.0.2/include"
+]
+
+MAKE_OUTPUT = "/experiment/makeout"
+
+METHOD_RANGE = (198, 328)
+# IF SOS+
+# METHOD_RANGE = (278, 280)
+
+SOSREPAIR = True
+
+NUMBER_OF_TIMES_RERUNNING_TESTS = 1
+EXCLUDE_SCANF = False
+
+BULK_RUN_PATH = ""
+
+GCOV_OBJECTS = "/experiment/src/src/.libs"

python/data/tests-list/lighttpd/lighttpd-bug-2254-2259/test.sh

@@ -0,0 +1,40 @@
+#!/bin/bash
+bugrev=2254
+dir=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
+run_test()
+{
+    cd $dir/src/tests
+    perl ../../lighttpd-run-tests.pl $1
+    if [ $? = 0 ] ; then
+        echo ""
+        echo "PASS"
+    else
+        echo ""
+        echo "FAIL"
+    fi
+    popd > /dev/null
+    killall -9 lighttpd &> /dev/null
+    return 0
+}
+case $1 in
+    p1) run_test 1 && exit 0 ;; 
+    p2) run_test 2 && exit 0 ;; 
+    p3) run_test 3 && exit 0 ;; 
+    p4) run_test 4 && exit 0 ;; 
+    p5) run_test 6 && exit 0 ;; 
+    p6) run_test 7 && exit 0 ;; 
+    p7) run_test 8 && exit 0 ;; 
+    p8) run_test 9 && exit 0 ;; 
+    p9) run_test 10 && exit 0 ;; 
+    p10) run_test 11 && exit 0 ;; 
+    p11) run_test 12 && exit 0 ;; 
+    p12) run_test 14 && exit 0 ;; 
+    p13) run_test 15 && exit 0 ;; 
+    p14) run_test 16 && exit 0 ;; 
+    p15) run_test 17 && exit 0 ;; 
+    p16) run_test 18 && exit 0 ;; 
+    p17) run_test 20 && exit 0 ;; 
+    p18) run_test 21 && exit 0 ;; 
+    n1) run_test 5 && exit 0 ;; 
+esac
+exit 1

python/data/tests-list/lighttpd/lighttpd-bug-2254-2259/tests-list.txt

@@ -0,0 +1,16 @@
+n1
+p1
+p2
+p3
+p4
+p5
+p6
+p7
+p9
+p11
+p12
+p13
+p14
+p15
+p16
+p17

python/data/tests-list/lighttpd/lighttpd-bug-2661-2662/notes.md

@@ -0,0 +1,3 @@
+For this bug both SOS and SOS+ can generate perfect patch
+but they won't if you return the first patch. If
+`--all_patches` is used the perfect patch will be generated.

python/data/tests-list/lighttpd/lighttpd-bug-2661-2662/test.sh

@@ -0,0 +1,54 @@
+#!/bin/bash
+bugrev=1913
+dir=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd ) 
+
+#Check if coverage is being run. If so, don't use time limit.
+#if [ `basename $2` = "coverage" ] ; then
+#    cov=0
+#else
+cov=0
+#fi
+
+run_test()
+{
+    cd $dir/src/tests
+    if [ $cov -eq 0 ] ; then
+        perl /experiment/lighttpd-run-tests.pl $1
+    else
+        timeout 5 perl /experiment/lighttpd-run-tests.pl $1
+    fi
+    RESULT=$?
+    if [ $RESULT = 0 ] ; then 
+	echo ""
+	echo "PASS"
+    else
+	echo ""
+	echo "FAIL"
+    fi
+    killall -9 lighttpd &> /dev/null
+    cd ../../
+    return 0
+}
+case $1 in
+    p1) run_test 1 && exit 0 ;;
+    p2) run_test 2 && exit 0 ;;
+    p3) run_test 3 && exit 0 ;;
+    p4) run_test 4 && exit 0 ;;
+    p5) run_test 5 && exit 0 ;;
+    p6) run_test 6 && exit 0 ;;
+    p7) run_test 7 && exit 0 ;;
+    p8) run_test 8 && exit 0 ;;
+    p9) run_test 9 && exit 0 ;;
+    p10) run_test 12 && exit 0 ;;
+    p11) run_test 13 && exit 0 ;;
+    p12) run_test 14 && exit 0 ;;
+    p13) run_test 15 && exit 0 ;;
+    p14) run_test 16 && exit 0 ;;
+    p15) run_test 17 && exit 0 ;;
+    p16) run_test 18 && exit 0 ;;
+    p17) run_test 20 && exit 0 ;;
+    p18) run_test 21 && exit 0 ;;
+    n1) run_test 10 && exit 0 ;;
+    n2) run_test 11 && exit 0 ;;
+esac
+exit 1

python/data/tests-list/lighttpd/lighttpd-bug-2661-2662/tests-list.txt

@@ -0,0 +1,19 @@
+n1
+n2
+p1
+p2
+p3
+p4
+p5
+p6
+p7
+p8
+p9
+p10
+p12
+p13
+p14
+p15
+p16
+p17
+p18

python/data/tests-list/lighttpd/lighttpd-bug-2785-2786/test.sh

@@ -0,0 +1,45 @@
+#!/bin/bash
+bugrev=1913
+dir=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd ) 
+
+
+run_test()
+{
+    cd $dir/src/tests
+    timeout 20 perl /experiment/lighttpd-run-tests.pl $1
+    RESULT=$?
+    if [ $RESULT = 0 ] ; then 
+	echo ""
+	echo "PASS"
+    else
+	echo ""
+	echo "FAIL"
+    fi
+    killall -9 lighttpd &> /dev/null
+    cd ../../
+    return 0
+}
+case $1 in
+    p1) run_test 1 && exit 0 ;;
+    p2) run_test 2 && exit 0 ;;
+    p3) run_test 3 && exit 0 ;;
+    p4) run_test 4 && exit 0 ;;
+    p5) run_test 5 && exit 0 ;;
+    p6) run_test 6 && exit 0 ;;
+    p7) run_test 7 && exit 0 ;;
+    p8) run_test 8 && exit 0 ;;
+    p9) run_test 9 && exit 0 ;;
+    p10) run_test 10 && exit 0 ;;
+    p11) run_test 11 && exit 0 ;;
+    p12) run_test 12 && exit 0 ;;
+    p13) run_test 13 && exit 0 ;;
+    p14) run_test 14 && exit 0 ;;
+    p15) run_test 15 && exit 0 ;;
+    p16) run_test 16 && exit 0 ;;
+    p17) run_test 17 && exit 0 ;;
+    p18) run_test 18 && exit 0 ;;
+    p19) run_test 20 && exit 0 ;;
+    p20) run_test 21 && exit 0 ;;
+    n1) run_test 19 && exit 0 ;;
+esac
+exit 1

python/data/tests-list/lighttpd/lighttpd-bug-2785-2786/tests-list.txt

@@ -0,0 +1,18 @@
+n1
+p2
+p4
+p5
+p6
+p7
+p8
+p9
+p10
+p12
+p13
+p14
+p15
+p16
+p17
+p18
+p19
+p20

python/data/tests-list/php/README.md

@@ -0,0 +1,23 @@
+## Running `php` bugs
+
+After running the container you need to follow the following
+steps to prepare `SOSRepair` for running:
+
+1. Copy `makeout`, `compile.sh` and `tests-list` to
+the container's `/experiment/`.
+2. Copy `settings.py` to the container's `/opt/sosrepair/sosrepair`.
+3. In the container, reconfigure the project with coverage flags:
+```
+cd /experiment/src
+./configure "CFLAGS=-fprofile-arcs -ftest-coverage" "CXXFLAGS=-fprofile-arcs -ftest-coverage" "LDFLAGS=-lgcov"
+make clean
+make
+```
+4. Run `/opt/sosrepair/prepare/setup.sh`.
+5. Set proper permissions by running `sudo chmod -R 777 /opt/sosrepair/sosrepair`.
+6. Setup environment variables:
+```
+export PYTHONPATH="/opt/sosrepair/bindings:${PYTHONPATH}"
+export CPATH=":/opt/sosrepair/include"
+export PATH="/opt/sosrepair/bin:$PATH"
+```

python/data/tests-list/php/compile.sh

@@ -0,0 +1,8 @@
+#!/bin/bash
+DIR=$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )
+
+cd $DIR/src
+#make clean
+(make && exit 0)|| exit 1
+
+

python/data/tests-list/php/copy.sh

@@ -0,0 +1,10 @@
+#!/bin/bash
+
+
+CONTAINER=$1
+BUG=$2
+
+docker cp compile.sh $CONTAINER:/experiment/
+#docker cp $BUG/test.sh $CONTAINER:/experiment/
+docker cp $BUG/tests-list.txt $CONTAINER:/experiment/
+docker cp $BUG/settings.py $CONTAINER:/opt/sosrepair/sosrepair/

python/data/tests-list/php/php-bug-2011-01-30-5bb0a44e06-1e91069eb4/settings.py

@@ -0,0 +1,84 @@
+"""
+This file includes all the settings that could be modified for running SearchRepair/SOSRepair
+
+* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
+* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
+ DB
+* Z3_COMMAND: The z3 command on this machine.
+* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
+* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
+* DATABASE: Information about the database.
+* LOGGING: Settings for logging.
+* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
+* VALID_TYPES: The variable types that are right now supported by SR.
+------ Settings related to file under repair -------
+* TESTS_LIST: The path to a list of the tests that could be run on the file
+* TEST_SCRIPT: The path to a script that will run the test
+* COMPILE_SCRIPT: The path to a script that will compile the code
+* FAULTY_CODE: The path to the faulty code (a C file)
+* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
+* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
+automatically)
+* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
+* SOSREPAIR: If set to False it will only run SearchRepair features
+* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
+* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
+"""
+__author__ = 'Afsoon Afzal'
+
+import logging
+
+
+LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
+
+GENERATE_DB_PATH = '/experiment/src'
+
+Z3_COMMAND = '/opt/sosrepair/bin/z3'
+
+LARGEST_SNIPPET = 7
+SMALLEST_SNIPPET = 3
+
+DATABASE = {
+    'db_name': 'testdocker',
+    'user': 'docker',
+    'password': '1234'
+}
+
+LOGGING = {
+    'filename': 'logs/repair.log',
+    'level': logging.DEBUG
+}
+
+logging.basicConfig(**LOGGING)
+
+MAX_SUSPICIOUS_LINES = 10
+
+VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
+
+TESTS_LIST = "/experiment/tests-list.txt"
+TEST_SCRIPT = "/experiment/test.sh"
+TEST_SCRIPT_TYPE = "/bin/bash"
+COMPILE_SCRIPT = "/experiment/compile.sh"
+FAULTY_CODE = "/experiment/src/ext/date/php_date.c"
+
+
+COMPILE_EXTRA_ARGS = [
+                    "-I/experiment/src",
+                    "-I/experiment/src/include",
+                    "-I/experiment/src/main",
+                    "-I/experiment/src/ext",
+                    "-I/usr/include",
+]
+
+MAKE_OUTPUT = "/experiment/makeout"
+
+METHOD_RANGE = (3076, 3095)
+# IF SOS+
+# METHOD_RANGE = (3088, 3088)
+
+SOSREPAIR = True
+
+NUMBER_OF_TIMES_RERUNNING_TESTS = 1
+EXCLUDE_SCANF = False
+
+BULK_RUN_PATH = ""

python/data/tests-list/php/php-bug-2011-01-30-5bb0a44e06-1e91069eb4/tests-list.txt

@@ -0,0 +1,13 @@
+n1
+p2414
+p2378
+p2327
+p2315
+p2298
+p2256
+p2156
+p2102
+p2087
+p2054
+p2042
+p2031

python/data/tests-list/php/php-bug-2011-02-01-01745fa657-1f49902999/settings.py

@@ -0,0 +1,84 @@
+"""
+This file includes all the settings that could be modified for running SearchRepair/SOSRepair
+
+* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
+* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
+ DB
+* Z3_COMMAND: The z3 command on this machine.
+* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
+* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
+* DATABASE: Information about the database.
+* LOGGING: Settings for logging.
+* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
+* VALID_TYPES: The variable types that are right now supported by SR.
+------ Settings related to file under repair -------
+* TESTS_LIST: The path to a list of the tests that could be run on the file
+* TEST_SCRIPT: The path to a script that will run the test
+* COMPILE_SCRIPT: The path to a script that will compile the code
+* FAULTY_CODE: The path to the faulty code (a C file)
+* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
+* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
+automatically)
+* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
+* SOSREPAIR: If set to False it will only run SearchRepair features
+* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
+* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
+"""
+__author__ = 'Afsoon Afzal'
+
+import logging
+
+
+LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
+
+GENERATE_DB_PATH = '/experiment/src'
+
+Z3_COMMAND = '/opt/sosrepair/bin/z3'
+
+LARGEST_SNIPPET = 7
+SMALLEST_SNIPPET = 3
+
+DATABASE = {
+    'db_name': 'testdocker',
+    'user': 'docker',
+    'password': '1234'
+}
+
+LOGGING = {
+    'filename': 'logs/repair.log',
+    'level': logging.DEBUG
+}
+
+logging.basicConfig(**LOGGING)
+
+MAX_SUSPICIOUS_LINES = 10
+
+VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
+
+TESTS_LIST = "/experiment/tests-list.txt"
+TEST_SCRIPT = "/experiment/test.sh"
+TEST_SCRIPT_TYPE = "/bin/bash"
+COMPILE_SCRIPT = "/experiment/compile.sh"
+FAULTY_CODE = "/experiment/src/main/streams/userspace.c"
+
+
+COMPILE_EXTRA_ARGS = [
+                    "-I/experiment/src",
+                    "-I/experiment/src/include",
+                    "-I/experiment/src/main",
+                    "-I/experiment/src/ext",
+                    "-I/usr/include",
+]
+
+MAKE_OUTPUT = "/experiment/makeout"
+
+METHOD_RANGE = (854, 893)
+# IF SOS+
+# METHOD_RANGE = (858, 859)
+
+SOSREPAIR = True
+
+NUMBER_OF_TIMES_RERUNNING_TESTS = 1
+EXCLUDE_SCANF = False
+
+BULK_RUN_PATH = ""

python/data/tests-list/php/php-bug-2011-02-01-01745fa657-1f49902999/tests-list.txt

@@ -0,0 +1,6 @@
+n1
+p7273
+p1845
+p1609
+p1298
+p59

python/data/tests-list/php/php-bug-2011-02-01-fefe9fc5c7-0927309852/settings.py

@@ -0,0 +1,84 @@
+"""
+This file includes all the settings that could be modified for running SearchRepair/SOSRepair
+
+* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
+* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
+ DB
+* Z3_COMMAND: The z3 command on this machine.
+* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
+* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
+* DATABASE: Information about the database.
+* LOGGING: Settings for logging.
+* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
+* VALID_TYPES: The variable types that are right now supported by SR.
+------ Settings related to file under repair -------
+* TESTS_LIST: The path to a list of the tests that could be run on the file
+* TEST_SCRIPT: The path to a script that will run the test
+* COMPILE_SCRIPT: The path to a script that will compile the code
+* FAULTY_CODE: The path to the faulty code (a C file)
+* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
+* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
+automatically)
+* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
+* SOSREPAIR: If set to False it will only run SearchRepair features
+* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
+* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
+"""
+__author__ = 'Afsoon Afzal'
+
+import logging
+
+
+LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
+
+GENERATE_DB_PATH = '/experiment/src'
+
+Z3_COMMAND = '/opt/sosrepair/bin/z3'
+
+LARGEST_SNIPPET = 7
+SMALLEST_SNIPPET = 3
+
+DATABASE = {
+    'db_name': 'testdocker',
+    'user': 'docker',
+    'password': '1234'
+}
+
+LOGGING = {
+    'filename': 'logs/repair.log',
+    'level': logging.DEBUG
+}
+
+logging.basicConfig(**LOGGING)
+
+MAX_SUSPICIOUS_LINES = 10
+
+VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
+
+TESTS_LIST = "/experiment/tests-list.txt"
+TEST_SCRIPT = "/experiment/test.sh"
+TEST_SCRIPT_TYPE = "/bin/bash"
+COMPILE_SCRIPT = "/experiment/compile.sh"
+FAULTY_CODE = "/experiment/src/ext/phar/phar.c"
+
+
+COMPILE_EXTRA_ARGS = [
+                    "-I/experiment/src",
+                    "-I/experiment/src/include",
+                    "-I/experiment/src/main",
+                    "-I/experiment/src/ext",
+                    "-I/usr/include",
+]
+
+MAKE_OUTPUT = "/experiment/makeout"
+
+METHOD_RANGE = (1246, 1318)
+# IF SOS+
+# METHOD_RANGE = (1268, 1268)
+
+SOSREPAIR = True
+
+NUMBER_OF_TIMES_RERUNNING_TESTS = 1
+EXCLUDE_SCANF = False
+
+BULK_RUN_PATH = ""

python/data/tests-list/php/php-bug-2011-02-01-fefe9fc5c7-0927309852/tests-list.txt

@@ -0,0 +1,230 @@
+n2
+n1
+p2559
+p2558
+p2557
+p2556
+p2555
+p2554
+p2553
+p2552
+p2551
+p2550
+p2549
+p2548
+p2547
+p2546
+p2545
+p2544
+p2543
+p2542
+p2541
+p2540
+p2539
+p2538
+p2537
+p2536
+p2535
+p2534
+p2532
+p2531
+p2530
+p2526
+p2525
+p2524
+p2523
+p2522
+p2521
+p2519
+p2518
+p2517
+p2516
+p2515
+p2514
+p2513
+p2512
+p2511
+p2510
+p2509
+p2508
+p2507
+p2506
+p2502
+p2501
+p2500
+p2499
+p2496
+p2495
+p2494
+p2493
+p2492
+p2491
+p2490
+p2489
+p2488
+p2487
+p2486
+p2485
+p2484
+p2483
+p2482
+p2481
+p2480
+p2479
+p2478
+p2477
+p2476
+p2475
+p2474
+p2473
+p2472
+p2471
+p2470
+p2469
+p2467
+p2466
+p2465
+p2464
+p2463
+p2442
+p2441
+p2440
+p2439
+p2438
+p2437
+p2435
+p2434
+p2433
+p2432
+p2431
+p2430
+p2429
+p2428
+p2427
+p2426
+p2425
+p2424
+p2423
+p2422
+p2421
+p2420
+p2419
+p2418
+p2416
+p2415
+p2414
+p2413
+p2412
+p2411
+p2410
+p2409
+p2408
+p2407
+p2406
+p2405
+p2404
+p2403
+p2402
+p2401
+p2400
+p2399
+p2398
+p2397
+p2396
+p2395
+p2394
+p2393
+p2392
+p2390
+p2389
+p2388
+p2387
+p2386
+p2385
+p2384
+p2383
+p2382
+p2380
+p2377
+p2376
+p2375
+p2374
+p2373
+p2371
+p2370
+p2369
+p2368
+p2367
+p2366
+p2365
+p2364
+p2363
+p2362
+p2361
+p2360
+p2359
+p2358
+p2357
+p2356
+p2355
+p2354
+p2353
+p2352
+p2351
+p2350
+p2349
+p2348
+p2345
+p2342
+p2341
+p2340
+p2339
+p2338
+p2337
+p2336
+p2335
+p2331
+p2296
+p2295
+p2294
+p2293
+p2292
+p2290
+p2286
+p2285
+p2284
+p2282
+p2281
+p2280
+p2246
+p2245
+p2244
+p2243
+p2242
+p2239
+p2238
+p2237
+p2236
+p2235
+p2234
+p2233
+p2232
+p2231
+p2230
+p2229
+p2228
+p2227
+p2226
+p2225
+p2224
+p2223
+p2222
+p2221
+p2220
+p2219
+p2218
+p2217
+p2216
+p2215
+p2212
+p2211

python/data/tests-list/php/php-bug-2011-02-27-e65d361fde-1d984a7ffd/settings.py

@@ -0,0 +1,84 @@
+"""
+This file includes all the settings that could be modified for running SearchRepair/SOSRepair
+
+* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
+* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
+ DB
+* Z3_COMMAND: The z3 command on this machine.
+* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
+* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
+* DATABASE: Information about the database.
+* LOGGING: Settings for logging.
+* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
+* VALID_TYPES: The variable types that are right now supported by SR.
+------ Settings related to file under repair -------
+* TESTS_LIST: The path to a list of the tests that could be run on the file
+* TEST_SCRIPT: The path to a script that will run the test
+* COMPILE_SCRIPT: The path to a script that will compile the code
+* FAULTY_CODE: The path to the faulty code (a C file)
+* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
+* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
+automatically)
+* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
+* SOSREPAIR: If set to False it will only run SearchRepair features
+* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
+* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
+"""
+__author__ = 'Afsoon Afzal'
+
+import logging
+
+
+LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
+
+GENERATE_DB_PATH = '/experiment/src'
+
+Z3_COMMAND = '/opt/sosrepair/bin/z3'
+
+LARGEST_SNIPPET = 7
+SMALLEST_SNIPPET = 3
+
+DATABASE = {
+    'db_name': 'testdocker',
+    'user': 'docker',
+    'password': '1234'
+}
+
+LOGGING = {
+    'filename': 'logs/repair.log',
+    'level': logging.DEBUG
+}
+
+logging.basicConfig(**LOGGING)
+
+MAX_SUSPICIOUS_LINES = 10
+
+VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
+
+TESTS_LIST = "/experiment/tests-list.txt"
+TEST_SCRIPT = "/experiment/test.sh"
+TEST_SCRIPT_TYPE = "/bin/bash"
+COMPILE_SCRIPT = "/experiment/compile.sh"
+FAULTY_CODE = "/experiment/src/ext/tokenizer/tokenizer.c"
+
+
+COMPILE_EXTRA_ARGS = [
+                    "-I/experiment/src",
+                    "-I/experiment/src/include",
+                    "-I/experiment/src/main",
+                    "-I/experiment/src/ext",
+                    "-I/usr/include",
+]
+
+MAKE_OUTPUT = "/experiment/makeout"
+
+METHOD_RANGE = (104, 158)
+# IF SOS+
+# METHOD_RANGE = (154, 154)
+
+SOSREPAIR = True
+
+NUMBER_OF_TIMES_RERUNNING_TESTS = 1
+EXCLUDE_SCANF = False
+
+BULK_RUN_PATH = ""

python/data/tests-list/php/php-bug-2011-02-27-e65d361fde-1d984a7ffd/tests-list.txt

@@ -0,0 +1,24 @@
+n2
+n1
+p5596
+p5595
+p5594
+p5593
+p5592
+p5591
+p5590
+p5589
+p5588
+p5586
+p5585
+p5584
+p5583
+p5581
+p5580
+p5579
+p5578
+p5577
+p5576
+p5575
+p5574
+p5573

python/data/tests-list/php/php-bug-2011-03-11-d890ece3fc-6e74d95f34/notes.md

@@ -0,0 +1,2 @@
+For running SOS+ you need to limit the variables to the set of
+`s`, `pp`, and `ret` for it to be able to find the perfect repair.

python/data/tests-list/php/php-bug-2011-03-11-d890ece3fc-6e74d95f34/settings.py

@@ -0,0 +1,84 @@
+"""
+This file includes all the settings that could be modified for running SearchRepair/SOSRepair
+
+* LIBCLANG_PATH: The path to libclang build. It should be either a .so or .dylib file.
+* GENERATE_DB_PATH: The path where the DB should be built from. SR will enumerate all C files in this path to build the
+ DB
+* Z3_COMMAND: The z3 command on this machine.
+* LARGEST_SNIPPET: The maximum number of lines that is considered as a snippet.
+* SMALLEST_SNIPPET: The minimum number of lines that is considered as a snippet.
+* DATABASE: Information about the database.
+* LOGGING: Settings for logging.
+* MAX_SUSPICIOUS_LINES: The number of suspicious lines tried before giving up.
+* VALID_TYPES: The variable types that are right now supported by SR.
+------ Settings related to file under repair -------
+* TESTS_LIST: The path to a list of the tests that could be run on the file
+* TEST_SCRIPT: The path to a script that will run the test
+* COMPILE_SCRIPT: The path to a script that will compile the code
+* FAULTY_CODE: The path to the faulty code (a C file)
+* COMPILE_EXTRA_ARGS: The list of necessary arguments that should be passed to clang to properly parse the code
+* MAKE_OUTPUT: The output of running `make` stored in a file (for the purpose of finding necessary arguments for compilation
+automatically)
+* METHOD_RANGE: The tuple of beginning and end of method with the fault (limits the search to the area)
+* SOSREPAIR: If set to False it will only run SearchRepair features
+* NUMBER_OF_TIMES_RERUNNING_TESTS: The number of times that the tests should be run to assure patch's correctness
+* EXCLUDE_SCANF: If removing/replacing scanf in buggy code is going to be a problem, set this to True
+"""
+__author__ = 'Afsoon Afzal'
+
+import logging
+
+
+LIBCLANG_PATH = '/opt/sosrepair/llvm/lib/libclang.so'
+
+GENERATE_DB_PATH = '/experiment/src'
+
+Z3_COMMAND = '/opt/sosrepair/bin/z3'
+
+LARGEST_SNIPPET = 7
+SMALLEST_SNIPPET = 3
+
+DATABASE = {
+    'db_name': 'testdocker',
+    'user': 'docker',
+    'password': '1234'
+}
+
+LOGGING = {
+    'filename': 'logs/repair.log',
+    'level': logging.DEBUG
+}
+
+logging.basicConfig(**LOGGING)
+
+MAX_SUSPICIOUS_LINES = 10
+
+VALID_TYPES = ['int', 'short', 'long', 'char', 'float', 'double', 'long long', 'size_t']
+
+TESTS_LIST = "/experiment/tests-list.txt"
+TEST_SCRIPT = "/experiment/test.sh"
+TEST_SCRIPT_TYPE = "/bin/bash"
+COMPILE_SCRIPT = "/experiment/compile.sh"
+FAULTY_CODE = "/experiment/src/ext/standard/url.c"
+
+
+COMPILE_EXTRA_ARGS = [
+                    "-I/experiment/src",
+                    "-I/experiment/src/include",
+                    "-I/experiment/src/main",
+                    "-I/experiment/src/ext",
+                    "-I/usr/include",
+]
+
+MAKE_OUTPUT = "/experiment/makeout"
+
+METHOD_RANGE = (99, 364)
+# IF SOS+
+# METHOD_RANGE = (319, 320)
+
+SOSREPAIR = True
+
+NUMBER_OF_TIMES_RERUNNING_TESTS = 1
+EXCLUDE_SCANF = False
+
+BULK_RUN_PATH = ""