diff --git a/Dataset/a.txt b/Dataset/a.txt
new file mode 100644
index 0000000..3f5e8ad
--- /dev/null
+++ b/Dataset/a.txt
@@ -0,0 +1,2518 @@
+vi renepickhardt-generalized-language-modeling-toolkit_501d3c_b72164src#main#java#de#glmtk#options#QueryModeFilesOption.txt   
+ :    37   :   39
+vi forcedotcom-phoenix_7f2b08_df0a4dsrc#main#java#com#salesforce#phoenix#flume#serializer#RegexEventSerializer.txt   
+ :    82   :   155
+vi forcedotcom-phoenix_7f2b08_df0a4dsrc#main#java#com#salesforce#phoenix#flume#serializer#RegexEventSerializer.txt   
+ :    82   :   155
+vi forcedotcom-phoenix_7f2b08_df0a4dsrc#main#java#com#salesforce#phoenix#flume#serializer#RegexEventSerializer.txt   
+ :    82   :   155
+vi code4craft-webmagic_b21e20_8c33bewebmagic-core#src#main#java#us#codecraft#webmagic#downloader#HttpClientDownloader.txt   
+ :    134   :   144
+vi LEDS-sincap-entities_b0bc66_50e599src#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    37   :   66
+vi LEDS-sincap-entities_b0bc66_50e599src#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    37   :   66
+vi LEDS-sincap-entities_b0bc66_50e599src#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    32   :   66
+vi LEDS-sincap-entities_b0bc66_50e599src#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    32   :   66
+vi LEDS-sincap-entities_b0bc66_50e599src#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    30   :   66
+vi LEDS-sincap-entities_b0bc66_50e599src#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    30   :   66
+vi perfectsense-dari_443eec_1133bcutil#src#main#java#com#psddev#dari#util#HtmlGrid.txt   
+ :    68   :   119
+vi arjovanramshorst-bubble-bobble-sem_aaa245_8b5cb3core#src#main#java#sem#group15#bubblebobble#core#objects#PlayerObject.txt   
+ :    41   :   46
+vi simon-eastwood-DependencyCheckCM_804e48_240ab0src#main#java#org#codesecure#dependencycheck#data#cpe#Index.txt   
+ :    271   :   287
+vi simon-eastwood-DependencyCheckCM_804e48_240ab0src#main#java#org#codesecure#dependencycheck#data#cpe#Index.txt   
+ :    271   :   287
+vi apache-commons-codec_114830_1a3a1bsrc#main#java#org#apache#commons#codec#binary#Base64.txt   
+ :    337   :   391
+vi apache-commons-codec_114830_1a3a1bsrc#main#java#org#apache#commons#codec#binary#Base64.txt   
+ :    337   :   391
+vi jcabi-jcabi-github_b0b882_f8f107src#main#java#com#jcabi#github#mock#MkOrganizations.txt   
+ :    116   :   141
+vi Bukkit-Bukkit_98d6a3_d5fdc4src#main#java#org#bukkit#plugin#java#JavaPluginLoader.txt   
+ :    122   :   184
+vi Bukkit-Bukkit_98d6a3_d5fdc4src#main#java#org#bukkit#plugin#java#JavaPluginLoader.txt   
+ :    122   :   184
+vi greese-dasein-cloud-core_043c84_a491a6src#main#java#org#dasein#cloud#network#NetworkInterface.txt   
+ :    53   :   58
+vi greese-dasein-cloud-core_043c84_a491a6src#main#java#org#dasein#cloud#network#NetworkInterface.txt   
+ :    52   :   58
+vi greese-dasein-cloud-core_043c84_a491a6src#main#java#org#dasein#cloud#network#NetworkInterface.txt   
+ :    52   :   58
+vi greese-dasein-cloud-core_043c84_a491a6src#main#java#org#dasein#cloud#network#NetworkInterface.txt   
+ :    53   :   58
+vi relayrides-pushy_219812_9747d7src#main#java#com#relayrides#pushy#apns#ApnsConnection.txt   
+ :    135   :   139
+vi EngineHub-CommandHelper_1fc018_2ed314src#main#java#com#laytonsmith#core#functions#BasicLogic.txt   
+ :    2514   :   2515
+vi perfectsense-dari_ddc6eb_6233bfutil#src#main#java#com#psddev#dari#util#HtmlGrid.txt   
+ :    68   :   119
+vi karamelchef-karamel_d8c349_8b52f3karamel-core#src#main#java#se#kth#karamel#backend#ClusterManager.txt   
+ :    209   :   235
+vi forcedotcom-phoenix_170471_21ed44src#main#java#com#salesforce#phoenix#util#CSVLoader.txt   
+ :    99   :   148
+vi forcedotcom-phoenix_170471_21ed44src#main#java#com#salesforce#phoenix#util#CSVLoader.txt   
+ :    99   :   148
+vi jbossas-jboss-ejb-client_fd7126_7a8879src#main#java#org#jboss#ejb#client#remoting#ConfigBasedEJBClientContextSelector.txt   
+ :    100   :   125
+vi jbossas-jboss-ejb-client_fd7126_7a8879src#main#java#org#jboss#ejb#client#remoting#ConfigBasedEJBClientContextSelector.txt   
+ :    100   :   125
+vi jcabi-jcabi-github_0d7f85_99e19csrc#main#java#com#jcabi#github#mock#MkOrganizations.txt   
+ :    116   :   141
+vi karamelchef-karamel_d0c86a_53de33karamel-core#src#main#java#se#kth#karamel#backend#ClusterManager.txt   
+ :    209   :   235
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_420a44_5856desrc#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    242   :   331
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_420a44_5856desrc#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    242   :   331
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_420a44_5856desrc#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    242   :   331
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_420a44_5856desrc#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    241   :   331
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_420a44_5856desrc#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    241   :   331
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_420a44_5856desrc#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    241   :   331
+vi apache-pdfbox_279203_ca50b4examples#src#main#java#org#apache#pdfbox#examples#fdf#PrintFields.txt   
+ :    69   :   124
+vi apache-pdfbox_279203_ca50b4examples#src#main#java#org#apache#pdfbox#examples#fdf#PrintFields.txt   
+ :    69   :   124
+vi apache-pdfbox_279203_ca50b4examples#src#main#java#org#apache#pdfbox#examples#fdf#PrintFields.txt   
+ :    69   :   124
+vi LEDS-sincap-entities_44ba50_a6fb94src#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    37   :   80
+vi LEDS-sincap-entities_44ba50_a6fb94src#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    37   :   80
+vi LEDS-sincap-entities_303892_7d6de9src#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    42   :   80
+vi LEDS-sincap-entities_303892_7d6de9src#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    44   :   80
+vi LEDS-sincap-entities_303892_7d6de9src#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    41   :   80
+vi aherbert-GDSC-SMLM_5519e2_ffe4f8src#main#java#gdsc#smlm#ij#plugins#PSFDrift.txt   
+ :    479   :   623
+vi aherbert-GDSC-SMLM_5519e2_ffe4f8src#main#java#gdsc#smlm#ij#plugins#PSFDrift.txt   
+ :    479   :   623
+vi aherbert-GDSC-SMLM_5519e2_ffe4f8src#main#java#gdsc#smlm#ij#plugins#PSFDrift.txt   
+ :    479   :   623
+vi ClemsonRSRG-RESOLVE_104e7c_98e349src#main#java#edu#clemson#cs#r2jt#congruenceclassprover#VerificationConditionCongruenceClosureImpl.txt   
+ :    52   :   65
+vi openmicroscopy-bioformats_bc8114_3f0b2bcomponents#bio-formats#src#loci#formats#in#ImagicReader.txt   
+ :    157   :   330
+vi ClemsonRSRG-RESOLVE_d41ac9_a7cb0bsrc#main#java#edu#clemson#cs#r2jt#congruenceclassprover#ConjunctionOfNormalizedAtomicExpressions.txt   
+ :    716   :   753
+vi ClemsonRSRG-RESOLVE_d41ac9_a7cb0bsrc#main#java#edu#clemson#cs#r2jt#congruenceclassprover#ConjunctionOfNormalizedAtomicExpressions.txt   
+ :    716   :   753
+vi jankotek-MapDB_806eb8_6c9fa8src#main#java#org#mapdb#DB.txt   
+ :    787   :   823
+vi jankotek-MapDB_806eb8_6c9fa8src#main#java#org#mapdb#DB.txt   
+ :    660   :   693
+vi ClemsonRSRG-RESOLVE_e8fde6_132c70src#main#java#edu#clemson#cs#r2jt#vcgeneration#VCGenerator.txt   
+ :    2822   :   3054
+vi ClemsonRSRG-RESOLVE_9887a7_542234src#main#java#edu#clemson#cs#r2jt#congruenceclassprover#CongruenceClassProver.txt   
+ :    329   :   338
+vi ClemsonRSRG-RESOLVE_9887a7_542234src#main#java#edu#clemson#cs#r2jt#congruenceclassprover#CongruenceClassProver.txt   
+ :    329   :   338
+vi ClemsonRSRG-RESOLVE_9887a7_542234src#main#java#edu#clemson#cs#r2jt#congruenceclassprover#CongruenceClassProver.txt   
+ :    329   :   338
+vi belaban-JGroups_8797b1_db28afsrc#org#jgroups#demos#Draw.txt   
+ :    300   :   308
+vi ClemsonRSRG-RESOLVE_cd708a_b8f789src#main#java#edu#clemson#cs#r2jt#congruenceclassprover#CongruenceClassProver.txt   
+ :    196   :   204
+vi ClemsonRSRG-RESOLVE_d17ca5_646cdcsrc#main#java#edu#clemson#cs#r2jt#rewriteprover#absyn#PSymbol.txt   
+ :    737   :   770
+vi ClemsonRSRG-RESOLVE_d17ca5_646cdcsrc#main#java#edu#clemson#cs#r2jt#rewriteprover#absyn#PSymbol.txt   
+ :    737   :   770
+vi ClemsonRSRG-RESOLVE_d17ca5_646cdcsrc#main#java#edu#clemson#cs#r2jt#rewriteprover#absyn#PSymbol.txt   
+ :    741   :   770
+vi ClemsonRSRG-RESOLVE_d17ca5_646cdcsrc#main#java#edu#clemson#cs#r2jt#rewriteprover#absyn#PSymbol.txt   
+ :    741   :   770
+vi mebigfatguy-fb-contrib_1f77c9_da2207src#com#mebigfatguy#fbcontrib#detect#SuspiciousUninitializedArray.txt   
+ :    108   :   270
+vi Studentmediene-Momus_0782ff_df9f0dsrc#main#java#no#dusken#momus#controller#DevController.txt   
+ :    103   :   131
+vi PerfCake-PerfCake_a197a4_3406f5src#main#java#org#perfcake#message#sender#CommandSender.txt   
+ :    141   :   142
+vi PerfCake-PerfCake_a197a4_3406f5src#main#java#org#perfcake#message#sender#CommandSender.txt   
+ :    140   :   142
+vi ArcBees-gwtquery_9b5ecd_5485f3gwtquery-core#src#main#java#com#google#gwt#query#client#plugins#Effects.txt   
+ :    121   :   178
+vi simon-eastwood-DependencyCheckCM_c04702_669fedsrc#main#java#org#codesecure#dependencycheck#utils#Downloader.txt   
+ :    127   :   160
+vi tengstrand-Laja_bdf680_d33074src#main#java#net#sf#laja#parser#cdd#state#StateParser.txt   
+ :    396   :   648
+vi oboformat-oboformat_286cec_8866aasrc#main#java#org#obolibrary#oboformat#parser#XrefExpander.txt   
+ :    58   :   131
+vi oboformat-oboformat_286cec_8866aasrc#main#java#org#obolibrary#oboformat#parser#XrefExpander.txt   
+ :    58   :   131
+vi FIWARE-Middleware-KIARA_7de970_1f3c50src#main#java#org#fiware#kiara#ps#rtps#builtin#data#ParticipantProxyData.txt   
+ :    89   :   104
+vi FIWARE-Middleware-KIARA_7de970_1f3c50src#main#java#org#fiware#kiara#ps#rtps#builtin#data#ParticipantProxyData.txt   
+ :    93   :   104
+vi FIWARE-Middleware-KIARA_7de970_1f3c50src#main#java#org#fiware#kiara#ps#rtps#builtin#data#ParticipantProxyData.txt   
+ :    92   :   104
+vi FIWARE-Middleware-KIARA_7de970_1f3c50src#main#java#org#fiware#kiara#ps#rtps#builtin#data#ParticipantProxyData.txt   
+ :    97   :   104
+vi named-data-jndn_9fefba_5e170csrc#net#named_data#jndn#util#Blob.txt   
+ :    249   :   253
+vi perfectsense-dari_97ef7c_4d7401util#src#main#java#com#psddev#dari#util#HtmlGrid.txt   
+ :    68   :   119
+vi SomMeri-less4j_ba7b05_6e1ecdsrc#main#java#com#github#sommeri#less4j#utils#CssPrinter.txt   
+ :    126   :   301
+vi plutext-docx4j_5f2a57_dd79cfsrc#main#java#org#docx4j#utils#JarCheck.txt   
+ :    205   :   249
+vi LEDS-sincap-entities_b21c8b_e711e4src#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    45   :   66
+vi LEDS-sincap-entities_b21c8b_e711e4src#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    45   :   66
+vi AtlasOfLivingAustralia-spatial-portal_492d6c_da1fe0src#main#java#org#ala#layers#util#Bil2diva.txt   
+ :    164   :   178
+vi perfectsense-dari_109e21_19c5adutil#src#main#java#com#psddev#dari#util#StringUtils.txt   
+ :    276   :   284
+vi renepickhardt-generalized-language-modeling-toolkit_c1ddd0_f1ee89src#de#typology#splitter#Aggregator.txt   
+ :    52   :   154
+vi renepickhardt-generalized-language-modeling-toolkit_c1ddd0_f1ee89src#de#typology#splitter#Aggregator.txt   
+ :    52   :   154
+vi Activiti-Activiti_90446c_2d592dmodules#activiti-engine#src#main#java#org#activiti#engine#impl#persistence#entity#ExecutionEntity.txt   
+ :    821   :   825
+vi vmi-selenese-runner-java_85cc14_08887dsrc#main#java#jp#vmi#selenium#selenese#RunFileInterceptor.txt   
+ :    22   :   36
+vi perfectsense-dari_674489_17da2eutil#src#main#java#com#psddev#dari#util#HtmlGrid.txt   
+ :    68   :   119
+vi keeps-db-preservation-toolkit_4b77dc_adf795src#main#java#pt#gov#dgarq#roda#common#convert#db#modules#siard#in#SIARDImportModule.txt   
+ :    784   :   821
+vi keeps-db-preservation-toolkit_4b77dc_adf795src#main#java#pt#gov#dgarq#roda#common#convert#db#modules#siard#in#SIARDImportModule.txt   
+ :    784   :   821
+vi keeps-db-preservation-toolkit_4b77dc_adf795src#main#java#pt#gov#dgarq#roda#common#convert#db#modules#siard#in#SIARDImportModule.txt   
+ :    784   :   821
+vi GenomicParisCentre-eoulsan_da0a29_689ad1src#main#java#fr#ens#transcriptome#eoulsan#steps#MergerStep.txt   
+ :    258   :   308
+vi GenomicParisCentre-eoulsan_da0a29_689ad1src#main#java#fr#ens#transcriptome#eoulsan#steps#MergerStep.txt   
+ :    258   :   308
+vi GenomicParisCentre-eoulsan_da0a29_689ad1src#main#java#fr#ens#transcriptome#eoulsan#steps#MergerStep.txt   
+ :    115   :   160
+vi Activiti-Activiti_459b79_b7f70dmodules#activiti-bpmn-converter#src#main#java#org#activiti#bpmn#converter#UserTaskXMLConverter.txt   
+ :    274   :   279
+vi jbossas-jboss-ejb-client_ce6280_8a3430src#main#java#org#jboss#ejb#client#remoting#ConfigBasedEJBClientContextSelector.txt   
+ :    100   :   125
+vi jbossas-jboss-ejb-client_ce6280_8a3430src#main#java#org#jboss#ejb#client#remoting#ConfigBasedEJBClientContextSelector.txt   
+ :    100   :   125
+vi marschraner-svm_719c5d_01789esrc#main#java#ch#metzenthin#svm#domain#commands#CommandInvokerImpl.txt   
+ :    63   :   71
+vi xetorthio-jedis_f065b8_833065src#main#java#redis#clients#jedis#Connection.txt   
+ :    55   :   61
+vi xetorthio-jedis_a041cf_8d0bb9src#main#java#redis#clients#jedis#Connection.txt   
+ :    165   :   174
+vi xetorthio-jedis_a041cf_8d0bb9src#main#java#redis#clients#jedis#Connection.txt   
+ :    164   :   174
+vi xetorthio-jedis_a041cf_8d0bb9src#main#java#redis#clients#jedis#Connection.txt   
+ :    166   :   174
+vi karamelchef-karamel_d78fa5_acf89fkaramel-core#src#main#java#se#kth#karamel#backend#ClusterManager.txt   
+ :    209   :   235
+vi rasto-lcmc_d001f9_914faasrc#main#java#lcmc#vm#ui#resource#DomainInfo.txt   
+ :    1640   :   1786
+vi altran-Whydah-UserIdentityBackend_650f82_c75185src#main#java#net#whydah#identity#user#resource#UserAdminHelper.txt   
+ :    120   :   139
+vi GenomicParisCentre-eoulsan_414e96_16c7c6src#main#java#fr#ens#transcriptome#eoulsan#bio#readsmappers#GSNAPReadsMapper.txt   
+ :    152   :   196
+vi UniTime-unitime_3ff5c2_a7fecbJavaSource#org#unitime#timetable#gwt#client#sectioning#DegreePlanTable.txt   
+ :    486   :   501
+vi UniTime-unitime_3ff5c2_a7fecbJavaSource#org#unitime#timetable#gwt#client#sectioning#DegreePlanTable.txt   
+ :    461   :   480
+vi UniTime-unitime_3ff5c2_a7fecbJavaSource#org#unitime#timetable#gwt#client#sectioning#DegreePlanTable.txt   
+ :    507   :   531
+vi jensnerche-plantuml_c4d2ad_8cd0c3src#net#sourceforge#plantuml#hector#CucaDiagramFileMakerHectorB2.txt   
+ :    136   :   161
+vi jensnerche-plantuml_c4d2ad_8cd0c3src#net#sourceforge#plantuml#hector#CucaDiagramFileMakerHectorB2.txt   
+ :    136   :   161
+vi grzegorz2047-OpenGuild2047_69a254_3e4b5asrc#main#java#pl#grzegorz2047#openguild2047#managers#TagManager.txt   
+ :    114   :   128
+vi LEDS-sincap-entities_2eb901_ced803src#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    36   :   80
+vi LEDS-sincap-entities_2eb901_ced803src#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    36   :   80
+vi mbosecke-pebble_0d8db7_a24e89src#main#java#com#mitchellbosecke#pebble#parser#ParserImpl.txt   
+ :    158   :   224
+vi mbosecke-pebble_0d8db7_a24e89src#main#java#com#mitchellbosecke#pebble#parser#ParserImpl.txt   
+ :    132   :   224
+vi mebigfatguy-fb-contrib_cc0d6b_ccf104src#com#mebigfatguy#fbcontrib#detect#SuspiciousCloneAlgorithm.txt   
+ :    123   :   185
+vi apache-pdfbox_e19f1e_13bb6eexamples#src#main#java#org#apache#pdfbox#examples#signature#CreateVisibleSignature.txt   
+ :    120   :   175
+vi apache-pdfbox_e19f1e_13bb6eexamples#src#main#java#org#apache#pdfbox#examples#signature#CreateVisibleSignature.txt   
+ :    120   :   175
+vi rapla-rapla_4b515e_a7bb20src#main#java#org#rapla#framework#ServiceListCreator.txt   
+ :    124   :   194
+vi droolsjbpm-optaplanner_a15eb6_0a29cedrools-planner-core#src#main#java#org#drools#planner#core#localsearch#decider#acceptor#tabu#AbstractTabuAcceptor.txt   
+ :    96   :   143
+vi droolsjbpm-optaplanner_a15eb6_0a29cedrools-planner-core#src#main#java#org#drools#planner#core#localsearch#decider#acceptor#tabu#AbstractTabuAcceptor.txt   
+ :    96   :   143
+vi ClemsonRSRG-RESOLVE_9887a7_542234src#main#java#edu#clemson#cs#r2jt#congruenceclassprover#TheoremCongruenceClosureImpl.txt   
+ :    113   :   143
+vi rasto-lcmc_cade3f_25d18asrc#main#java#lcmc#gui#resources#DrbdResourceInfo.txt   
+ :    1099   :   1143
+vi minusone13-InvoicingSystem_9e3432_111dbfsrc#main#java#presentation#managerui#JPBill.txt   
+ :    1104   :   1117
+vi minusone13-InvoicingSystem_9e3432_111dbfsrc#main#java#presentation#managerui#JPBill.txt   
+ :    1105   :   1117
+vi minusone13-InvoicingSystem_9e3432_111dbfsrc#main#java#presentation#managerui#JPBill.txt   
+ :    1108   :   1117
+vi minusone13-InvoicingSystem_9e3432_111dbfsrc#main#java#presentation#managerui#JPBill.txt   
+ :    1107   :   1117
+vi minusone13-InvoicingSystem_9e3432_111dbfsrc#main#java#presentation#managerui#JPBill.txt   
+ :    1106   :   1117
+vi renepickhardt-generalized-language-modeling-toolkit_c5e8c8_684562src#de#typology#splitter#Sequencer.txt   
+ :    26   :   30
+vi renepickhardt-generalized-language-modeling-toolkit_c5e8c8_684562src#de#typology#splitter#Sequencer.txt   
+ :    28   :   30
+vi renepickhardt-generalized-language-modeling-toolkit_c5e8c8_684562src#de#typology#splitter#Sequencer.txt   
+ :    27   :   30
+vi GenomicParisCentre-eoulsan_68e564_4ecf5esrc#main#java#fr#ens#transcriptome#eoulsan#steps#expression#hadoop#ExpressionHadoopStep.txt   
+ :    496   :   558
+vi ArcBees-gwtquery_6f8ccb_f0949bgwtquery-core#src#main#java#com#google#gwt#query#client#plugins#deferred#PromiseReqBuilder.txt   
+ :    71   :   149
+vi ArcBees-gwtquery_6f8ccb_f0949bgwtquery-core#src#main#java#com#google#gwt#query#client#plugins#deferred#PromiseReqBuilder.txt   
+ :    71   :   149
+vi karamelchef-karamel_69405a_40a3f1karamel-core#src#main#java#se#kth#karamel#client#api#KaramelApiImpl.txt   
+ :    325   :   341
+vi nuxeo-nuxeo-platform-document-routing_b34c01_048749nuxeo-platform-document-routing-core#src#main#java#org#nuxeo#ecm#platform#routing#core#impl#DocumentRoutingServiceImpl.txt   
+ :    456   :   475
+vi xetorthio-jedis_d71059_35a117src#main#java#redis#clients#jedis#HostAndPort.txt   
+ :    24   :   34
+vi Activiti-Activiti_bb99d5_9f596dmodules#activiti-engine#src#main#java#org#activiti#engine#impl#cmd#StartProcessInstanceCmd.txt   
+ :    105   :   177
+vi Activiti-Activiti_bb99d5_9f596dmodules#activiti-engine#src#main#java#org#activiti#engine#impl#cmd#StartProcessInstanceCmd.txt   
+ :    91   :   177
+vi mulesoft-mule-common_fa5994_063889src#main#java#org#mule#common#metadata#builder#DefaultMetaDataFieldBuilder.txt   
+ :    109   :   129
+vi mebigfatguy-fb-contrib_cc0d6b_ccf104src#com#mebigfatguy#fbcontrib#detect#ReflectionOnObjectMethods.txt   
+ :    130   :   267
+vi tomp2p-TomP2P_b24c4d_a08de3core#src#main#java#net#tomp2p#p2p#builder#SynchronizationBuilder.txt   
+ :    186   :   258
+vi tomp2p-TomP2P_b24c4d_a08de3core#src#main#java#net#tomp2p#p2p#builder#SynchronizationBuilder.txt   
+ :    186   :   258
+vi perfectsense-dari_7bd889_9f62acutil#src#main#java#com#psddev#dari#util#HtmlGrid.txt   
+ :    68   :   119
+vi biojava-biojava_af0388_37c190biojava3-structure-gui#src#main#java#org#biojava#bio#structure#gui#ScaleableMatrixPanel.txt   
+ :    95   :   159
+vi belaban-JGroups_17cf10_1f330dsrc#org#jgroups#protocols#Locking.txt   
+ :    137   :   153
+vi mkovatsc-Californium_484cf7_7b4f54californium#src#main#java#ch#ethz#inf#vs#californium#coap#Option.txt   
+ :    353   :   378
+vi mkovatsc-Californium_484cf7_7b4f54californium#src#main#java#ch#ethz#inf#vs#californium#coap#Option.txt   
+ :    359   :   378
+vi FIWARE-Middleware-KIARA_3b0a4a_c970c4src#main#java#org#fiware#kiara#ps#rtps#messages#MessageReceiver.txt   
+ :    578   :   623
+vi FIWARE-Middleware-KIARA_3b0a4a_c970c4src#main#java#org#fiware#kiara#ps#rtps#messages#MessageReceiver.txt   
+ :    578   :   623
+vi FIWARE-Middleware-KIARA_3b0a4a_c970c4src#main#java#org#fiware#kiara#ps#rtps#messages#MessageReceiver.txt   
+ :    578   :   623
+vi FIWARE-Middleware-KIARA_3b0a4a_c970c4src#main#java#org#fiware#kiara#ps#rtps#messages#MessageReceiver.txt   
+ :    578   :   623
+vi svn2github-forge_8dff23_3a4fa1src#main#java#forge#model#FModel.txt   
+ :    125   :   172
+vi thinkofdeath-ThinkMap_835e77_7cf7e2client#src#main#java#uk#co#thinkofdeath#mapviewer#client#render#Renderer.txt   
+ :    74   :   84
+vi GenomicParisCentre-eoulsan_1bd7b5_8e3192src#main#java#fr#ens#transcriptome#eoulsan#bio#expressioncounters#HTSeqUtils.txt   
+ :    313   :   340
+vi paul-hammant-qdox_5496ab_bbd273src#java#com#thoughtworks#qdox#library#SourceLibrary.txt   
+ :    70   :   79
+vi paul-hammant-qdox_5496ab_bbd273src#java#com#thoughtworks#qdox#library#SourceLibrary.txt   
+ :    70   :   79
+vi datasift-datasift-java_5feafa_e811fbsrc#org#datasift#streamconsumer#HttpMultiThread.txt   
+ :    132   :   199
+vi datasift-datasift-java_5feafa_e811fbsrc#org#datasift#streamconsumer#HttpMultiThread.txt   
+ :    132   :   199
+vi mebigfatguy-fb-contrib_cc0d6b_ccf104src#com#mebigfatguy#fbcontrib#detect#NonOwnedSynchronization.txt   
+ :    122   :   220
+vi niyue-coding_557f95_9d7bc1src#main#java#com#niyue#coding#leetcode#sortedarraytobst#Solution.txt   
+ :    15   :   20
+vi niyue-coding_557f95_9d7bc1src#main#java#com#niyue#coding#leetcode#sortedarraytobst#Solution.txt   
+ :    16   :   20
+vi jcabi-jcabi-github_5e3ae4_be8582src#main#java#com#jcabi#github#mock#MkOrganizations.txt   
+ :    116   :   141
+vi LEDS-sincap-entities_f60b3e_3a4a84src#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    45   :   66
+vi LEDS-sincap-entities_f60b3e_3a4a84src#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    45   :   66
+vi gertvv-addis_f3097a_f0ff35src#main#java#org#drugis#addis#presentation#NetworkMetaAnalysisPresentation.txt   
+ :    56   :   59
+vi mebigfatguy-fb-contrib_ba6525_3e56b6src#com#mebigfatguy#fbcontrib#detect#PossibleConstantAllocationInLoop.txt   
+ :    103   :   268
+vi cjdev-versions-maven-plugin_339909_e35f9fsrc#main#java#org#codehaus#mojo#versions#AbstractVersionsDependencyUpdaterMojo.txt   
+ :    103   :   104
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_82c169_aeb6a1src#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    104   :   174
+vi cojen-Tupl_3abea5_757fabsrc#main#java#org#cojen#tupl#RedoWriter.txt   
+ :    356   :   363
+vi ClemsonRSRG-RESOLVE_e47f7f_6745c0src#main#java#edu#clemson#cs#r2jt#congruenceclassprover#CongruenceClassProver.txt   
+ :    329   :   338
+vi ClemsonRSRG-RESOLVE_e47f7f_6745c0src#main#java#edu#clemson#cs#r2jt#congruenceclassprover#CongruenceClassProver.txt   
+ :    329   :   338
+vi ClemsonRSRG-RESOLVE_e47f7f_6745c0src#main#java#edu#clemson#cs#r2jt#congruenceclassprover#CongruenceClassProver.txt   
+ :    329   :   338
+vi digipost-digipost-api-client-java_d713e2_5897a7src#main#java#no#digipost#api#client#representations#Message.txt   
+ :    176   :   181
+vi digipost-digipost-api-client-java_d713e2_5897a7src#main#java#no#digipost#api#client#representations#Message.txt   
+ :    175   :   181
+vi jcabi-jcabi-github_75c9a7_841a00src#main#java#com#jcabi#github#mock#MkOrganizations.txt   
+ :    116   :   141
+vi xetorthio-jedis_fa63e8_f76e9esrc#main#java#redis#clients#jedis#Connection.txt   
+ :    56   :   62
+vi Activiti-Activiti_fb4b88_1edb7fmodules#activiti-engine#src#main#java#org#activiti#engine#impl#event#AbstractEventHandler.txt   
+ :    98   :   109
+vi mebigfatguy-fb-contrib_da3f9f_b5a904src#com#mebigfatguy#fbcontrib#detect#InheritanceTypeChecking.txt   
+ :    89   :   105
+vi ovgu-ccd-jchess_5ff121_48818bjchess#gui#GUIConnector.txt   
+ :    53   :   57
+vi buddycloud-buddycloud-server-java_d1d377_d312cfsrc#main#java#org#buddycloud#channelserver#packetprocessor#iq#namespace#pubsub#get#RepliesGet.txt   
+ :    105   :   133
+vi ClemsonRSRG-RESOLVE_6adf7f_573169src#main#java#edu#clemson#cs#r2jt#congruenceclassprover#TheoremCongruenceClosureImpl.txt   
+ :    117   :   157
+vi ClemsonRSRG-RESOLVE_546b3f_c91dbesrc#main#java#edu#clemson#cs#r2jt#congruenceclassprover#SMTProver.txt   
+ :    394   :   398
+vi ClemsonRSRG-RESOLVE_546b3f_c91dbesrc#main#java#edu#clemson#cs#r2jt#congruenceclassprover#SMTProver.txt   
+ :    394   :   398
+vi ClemsonRSRG-RESOLVE_546b3f_c91dbesrc#main#java#edu#clemson#cs#r2jt#congruenceclassprover#SMTProver.txt   
+ :    394   :   398
+vi xetorthio-jedis_f77892_b2fcbesrc#main#java#redis#clients#jedis#HostAndPort.txt   
+ :    24   :   34
+vi OpenTreeOfLife-taxomachine_75ab8c_16020fsrc#main#java#opentree#MainRunner.txt   
+ :    130   :   155
+vi apache-creadur-rat_fdfd5b_d104b6apache-rat-plugin#src#main#java#org#apache#rat#mp#RatCheckMojo.txt   
+ :    147   :   151
+vi mebigfatguy-fb-contrib_1f77c9_da2207src#com#mebigfatguy#fbcontrib#detect#SuspiciousCloneAlgorithm.txt   
+ :    123   :   185
+vi ClemsonRSRG-RESOLVE_0d5705_40468bsrc#main#java#edu#clemson#cs#r2jt#translation#PrettyCTranslation.txt   
+ :    51   :   56
+vi biojava-biojava_f017c0_e8234fbiojava3-modfinder#src#main#java#org#biojava#phosphosite#Site.txt   
+ :    24   :   101
+vi buddycloud-buddycloud-server-java_d889a2_a2b959src#main#java#org#buddycloud#channelserver#packetprocessor#iq#namespace#pubsub#set#SubscriptionEvent.txt   
+ :    166   :   174
+vi marklogic-java-client-api_118cc9_dec540src#main#java#com#marklogic#client#io#SearchHandle.txt   
+ :    400   :   401
+vi hector-client-hector_890814_c80f80src#main#java#me#prettyprint#cassandra#service#CassandraClientPoolImpl.txt   
+ :    167   :   175
+vi hector-client-hector_890814_c80f80src#main#java#me#prettyprint#cassandra#service#CassandraClientPoolImpl.txt   
+ :    154   :   175
+vi mysticfall-pivot4j_cc9b1c_64585dsrc#main#java#com#eyeq#pivot4j#transform#impl#PlaceMembersOnAxesImpl.txt   
+ :    61   :   75
+vi aherbert-GDSC-SMLM_1b5d35_c4be9esrc#main#java#gdsc#smlm#ij#plugins#PSFDrift.txt   
+ :    479   :   623
+vi apache-hadoop-common_47fe31_c80200src#main#java#org#apache#hadoop#hbase#ipc#WritableRpcEngine.txt   
+ :    136   :   148
+vi mebigfatguy-fb-contrib_cc0d6b_ccf104src#com#mebigfatguy#fbcontrib#detect#PossibleConstantAllocationInLoop.txt   
+ :    103   :   268
+vi ClemsonRSRG-RESOLVE_fb5773_9ed777src#main#java#edu#clemson#cs#r2jt#rewriteprover#absyn#PSymbol.txt   
+ :    741   :   770
+vi ClemsonRSRG-RESOLVE_fb5773_9ed777src#main#java#edu#clemson#cs#r2jt#rewriteprover#absyn#PSymbol.txt   
+ :    741   :   770
+vi ClemsonRSRG-RESOLVE_fb5773_9ed777src#main#java#edu#clemson#cs#r2jt#rewriteprover#absyn#PSymbol.txt   
+ :    737   :   770
+vi ClemsonRSRG-RESOLVE_fb5773_9ed777src#main#java#edu#clemson#cs#r2jt#rewriteprover#absyn#PSymbol.txt   
+ :    737   :   770
+vi mebigfatguy-fb-contrib_cd441f_d9c646src#com#mebigfatguy#fbcontrib#detect#NeedlessMemberCollectionSynchronization.txt   
+ :    271   :   342
+vi shabbies-clockwork_74e185_6cd619src#main#java#servlet#FacebookLoginServlet.txt   
+ :    88   :   120
+vi bpiwowar-experimaestro_fa637a_4a346asrc#main#java#sf#net#experimaestro#scheduler#TokenResource.txt   
+ :    87   :   88
+vi named-data-jndn_b4086e_db9ccdsrc#net#named_data#jndn#util#Blob.txt   
+ :    249   :   253
+vi EngineHub-CommandHelper_2ed314_af92d8src#main#java#com#laytonsmith#core#functions#ExecutionQueue.txt   
+ :    313   :   314
+vi WorldCretornica-PlotMe-Core_ce44ef_34930esrc#bukkit#java#com#worldcretornica#plotme_core#bukkit#api#BukkitLocation.txt   
+ :    82   :   88
+vi jcabi-jcabi-github_649ab5_5f5a4csrc#main#java#com#jcabi#github#mock#MkOrganizations.txt   
+ :    116   :   141
+vi LEDS-sincap-entities_cbbc45_6190c0src#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    45   :   66
+vi Bombe-Sone_cb0161_76ed63src#main#java#net#pterodactylus#sone#core#SoneParser.txt   
+ :    150   :   342
+vi LEDS-sincap-entities_ea2c97_b21c8bsrc#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    33   :   66
+vi LEDS-sincap-entities_ea2c97_b21c8bsrc#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    33   :   66
+vi mebigfatguy-fb-contrib_1f77c9_da2207src#com#mebigfatguy#fbcontrib#detect#PossibleConstantAllocationInLoop.txt   
+ :    103   :   268
+vi ClemsonRSRG-RESOLVE_19f744_a8b76csrc#main#java#edu#clemson#cs#r2jt#proving2#AlgebraicProver.txt   
+ :    295   :   397
+vi ClemsonRSRG-RESOLVE_19f744_a8b76csrc#main#java#edu#clemson#cs#r2jt#proving2#AlgebraicProver.txt   
+ :    295   :   397
+vi ClemsonRSRG-RESOLVE_19f744_a8b76csrc#main#java#edu#clemson#cs#r2jt#proving2#AlgebraicProver.txt   
+ :    295   :   397
+vi ClemsonRSRG-RESOLVE_19f744_a8b76csrc#main#java#edu#clemson#cs#r2jt#proving2#AlgebraicProver.txt   
+ :    295   :   397
+vi ClemsonRSRG-RESOLVE_19f744_a8b76csrc#main#java#edu#clemson#cs#r2jt#proving2#AlgebraicProver.txt   
+ :    295   :   397
+vi ClemsonRSRG-RESOLVE_19f744_a8b76csrc#main#java#edu#clemson#cs#r2jt#proving2#AlgebraicProver.txt   
+ :    295   :   397
+vi ClemsonRSRG-RESOLVE_19f744_a8b76csrc#main#java#edu#clemson#cs#r2jt#proving2#AlgebraicProver.txt   
+ :    295   :   397
+vi ClemsonRSRG-RESOLVE_19f744_a8b76csrc#main#java#edu#clemson#cs#r2jt#proving2#AlgebraicProver.txt   
+ :    295   :   397
+vi ClemsonRSRG-RESOLVE_19f744_a8b76csrc#main#java#edu#clemson#cs#r2jt#proving2#AlgebraicProver.txt   
+ :    295   :   397
+vi ClemsonRSRG-RESOLVE_19f744_a8b76csrc#main#java#edu#clemson#cs#r2jt#proving2#AlgebraicProver.txt   
+ :    295   :   397
+vi mebigfatguy-fb-contrib_cc0d6b_ccf104src#com#mebigfatguy#fbcontrib#detect#UnusedParameter.txt   
+ :    161   :   232
+vi jhpoelen-eol-globi-data_8b9375_cff6b3src#main#java#org#trophic#graph#data#StudyImporterImpl.txt   
+ :    155   :   164
+vi jcabi-jcabi-github_3d7fa7_5288d8src#main#java#com#jcabi#github#mock#MkOrganizations.txt   
+ :    116   :   141
+vi ClemsonRSRG-RESOLVE_f51acf_11dbb6src#main#java#edu#clemson#cs#r2jt#absynnew#ResolveCompiler.txt   
+ :    146   :   176
+vi digipost-digipost-api-client-java_ee2aa3_7b5e7dsrc#main#java#no#digipost#api#client#swing#DigipostSwingClient.txt   
+ :    444   :   632
+vi digipost-digipost-api-client-java_ee2aa3_7b5e7dsrc#main#java#no#digipost#api#client#swing#DigipostSwingClient.txt   
+ :    444   :   632
+vi paul-hammant-qdox_982857_b33a7asrc#java#com#thoughtworks#qdox#builder#ModelBuilder.txt   
+ :    190   :   201
+vi mebigfatguy-fb-contrib_cd441f_d9c646src#com#mebigfatguy#fbcontrib#detect#ModifyingUnmodifiableCollection.txt   
+ :    116   :   160
+vi ClemsonRSRG-RESOLVE_6a59d3_f2823esrc#main#java#edu#clemson#cs#r2jt#init#Controller.txt   
+ :    1853   :   1862
+vi ClemsonRSRG-RESOLVE_6a59d3_f2823esrc#main#java#edu#clemson#cs#r2jt#init#Controller.txt   
+ :    1812   :   1822
+vi ClemsonRSRG-RESOLVE_6a59d3_f2823esrc#main#java#edu#clemson#cs#r2jt#init#Controller.txt   
+ :    1852   :   1862
+vi ClemsonRSRG-RESOLVE_6a59d3_f2823esrc#main#java#edu#clemson#cs#r2jt#init#Controller.txt   
+ :    1813   :   1822
+vi datanucleus-datanucleus-core_2e3757_f31561src#main#java#org#datanucleus#metadata#AbstractMemberMetaData.txt   
+ :    2380   :   2382
+vi ClemsonRSRG-RESOLVE_c41658_cfcc0fsrc#main#java#edu#clemson#cs#r2jt#translation#PrettyJavaTranslation.txt   
+ :    56   :   64
+vi karamelchef-karamel_6fd4ec_a33dcfkaramel-core#src#main#java#se#kth#karamel#backend#ClusterManager.txt   
+ :    209   :   235
+vi Activiti-Activiti_90446c_2d592dmodules#activiti-bpmn-converter#src#main#java#org#activiti#bpmn#converter#UserTaskXMLConverter.txt   
+ :    274   :   279
+vi kuujo-vertigo_32f077_0c4769src#main#java#net#kuujo#vertigo#component#ComponentBase.txt   
+ :    206   :   212
+vi OpenRock-OpenIG_33a085_b4ffbeopenig-oauth2#src#main#java#org#forgerock#openig#filter#oauth2#client#OAuth2Provider.txt   
+ :    237   :   243
+vi belaban-JGroups_7ac81b_2e43basrc#org#jgroups#protocols#Locking.txt   
+ :    137   :   153
+vi jankotek-MapDB_e12cdf_c14bd7src#main#java#org#mapdb#SerializerPojo.txt   
+ :    245   :   270
+vi jankotek-MapDB_e12cdf_c14bd7src#main#java#org#mapdb#SerializerPojo.txt   
+ :    244   :   270
+vi openpnp-openpnp_190e8c_cd5d59src#main#java#org#openpnp#spi#JobPlanner.txt   
+ :    33   :   37
+vi mebigfatguy-fb-contrib_cd441f_d9c646src#com#mebigfatguy#fbcontrib#detect#LingeringGraphicsObjects.txt   
+ :    92   :   159
+vi perfectsense-dari_99b1d8_59385eutil#src#main#java#com#psddev#dari#util#HtmlGrid.txt   
+ :    68   :   119
+vi airlift-airlift_d97ba5_501905src#main#java#com#facebook#presto#UncompressedLongCursor.txt   
+ :    91   :   92
+vi plutext-docx4j_98ef1e_06c2bdsrc#main#java#org#opendope#conditions#Condition.txt   
+ :    127   :   129
+vi rasto-lcmc_973516_57efddsrc#main#java#lcmc#gui#resources#VMSVirtualDomainInfo.txt   
+ :    1870   :   1907
+vi rhuss-docker-maven-plugin_790092_42511bsrc#main#java#org#jolokia#docker#maven#config#handler#PropertyConfigHandler.txt   
+ :    119   :   143
+vi rhuss-docker-maven-plugin_790092_42511bsrc#main#java#org#jolokia#docker#maven#config#handler#PropertyConfigHandler.txt   
+ :    119   :   143
+vi sboesebeck-morphium_e8244f_7da86fsrc#de#caluga#morphium#ObjectMapperImpl.txt   
+ :    540   :   549
+vi GenomicParisCentre-eoulsan_dde9b7_3cf6cfsrc#main#java#fr#ens#transcriptome#eoulsan#ui#BasicUI.txt   
+ :    79   :   100
+vi grzegorz2047-OpenGuild2047_006db5_4ab0f3src#main#java#pl#grzegorz2047#openguild2047#cuboidmanagement#CuboidStuff.txt   
+ :    157   :   167
+vi deeplearning4j-deeplearning4j_38695e_e3f9a8deeplearning4j-core#src#main#java#org#deeplearning4j#nn#BaseMultiLayerNetwork.txt   
+ :    768   :   802
+vi ArcBees-gwtquery_7a5db3_2dee8fgwtquery-core#src#main#java#com#google#gwt#query#client#plugins#deferred#PromiseReqBuilder.txt   
+ :    71   :   149
+vi ArcBees-gwtquery_7a5db3_2dee8fgwtquery-core#src#main#java#com#google#gwt#query#client#plugins#deferred#PromiseReqBuilder.txt   
+ :    71   :   149
+vi mrniko-netty-socketio_a0d2b1_8f6b55src#main#java#com#corundumstudio#socketio#transport#WebSocketTransport.txt   
+ :    172   :   196
+vi mrniko-netty-socketio_a0d2b1_8f6b55src#main#java#com#corundumstudio#socketio#transport#WebSocketTransport.txt   
+ :    172   :   196
+vi mebigfatguy-fb-contrib_1f77c9_da2207src#com#mebigfatguy#fbcontrib#detect#NonOwnedSynchronization.txt   
+ :    122   :   220
+vi tastybento-askyblock_e87ba1_5f5642src#com#wasteofplastic#askyblock#Locale.txt   
+ :    792   :   1046
+vi GenomicParisCentre-eoulsan_414e96_16c7c6src#main#java#fr#ens#transcriptome#eoulsan#bio#readsmappers#Bowtie2ReadsMapper.txt   
+ :    199   :   236
+vi OpenTreeOfLife-treemachine_f2fbbe_783285src#main#java#opentree#PhylografterConnector.txt   
+ :    204   :   280
+vi OpenTreeOfLife-treemachine_f2fbbe_783285src#main#java#opentree#PhylografterConnector.txt   
+ :    204   :   280
+vi minusone13-InvoicingSystem_998405_f90c25src#main#java#presentation#managerui#JPBill.txt   
+ :    1057   :   1067
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+vi jcabi-jcabi-github_56d80f_6967ffsrc#main#java#com#jcabi#github#mock#MkOrganizations.txt   
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+vi minusone13-InvoicingSystem_53ffb6_11c3e2src#main#java#presentation#managerui#JPBill.txt   
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+vi kuujo-vertigo_5479bc_22be52src#main#java#net#kuujo#vertigo#component#impl#AbstractComponent.txt   
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+vi pendelhaven3-magic_7b4d7e_7678ebsrc#main#java#com#pj#magic#gui#panels#ReceivingReceiptPanel.txt   
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+vi pendelhaven3-magic_7b4d7e_7678ebsrc#main#java#com#pj#magic#gui#panels#ReceivingReceiptPanel.txt   
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+vi pendelhaven3-magic_7b4d7e_7678ebsrc#main#java#com#pj#magic#gui#panels#ReceivingReceiptPanel.txt   
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+vi Activiti-Activiti_e57bd9_bc87a6modules#activiti-engine#src#main#java#org#activiti#engine#impl#persistence#entity#ExecutionEntity.txt   
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+vi GenomicParisCentre-eoulsan_0cd9ac_786ab4src#main#java#fr#ens#transcriptome#eoulsan#steps#expression#hadoop#ExpressionHadoopStep.txt   
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+vi Activiti-Activiti_ad0c9e_36f30cmodules#activiti-bpmn-converter#src#main#java#org#activiti#bpmn#converter#UserTaskXMLConverter.txt   
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+vi GenomicParisCentre-eoulsan_d54204_191f98src#main#java#fr#ens#transcriptome#eoulsan#steps#expression#hadoop#ExpressionHadoopStep.txt   
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+vi tastybento-askyblock_cfba6a_f72b35src#com#wasteofplastic#askyblock#Locale.txt   
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+vi rasto-lcmc_20bd68_74631dsrc#main#java#lcmc#gui#ResourceGraph.txt   
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+vi shilad-wikibrain_375473_b7453dwikibrain-spatial#src#main#java#org#wikibrain#spatial#loader#GADMConverter.txt   
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+vi shilad-wikibrain_375473_b7453dwikibrain-spatial#src#main#java#org#wikibrain#spatial#loader#GADMConverter.txt   
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+vi bitcoinj-bitcoinj_ba2255_42b5a0src#com#google#bitcoin#core#PeerAddress.txt   
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+vi perfectsense-dari_954c97_897019util#src#main#java#com#psddev#dari#util#HtmlGrid.txt   
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+vi FIWARE-Middleware-KIARA_f7f53e_c7a8dbsrc#main#java#org#fiware#kiara#ps#rtps#participant#RTPSParticipant.txt   
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+vi FIWARE-Middleware-KIARA_f7f53e_c7a8dbsrc#main#java#org#fiware#kiara#ps#rtps#participant#RTPSParticipant.txt   
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+vi paulhoule-infovore_738dc2_c2d27dharuhi#src#main#java#com#ontology2#haruhi#FlowApp.txt   
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+vi paulhoule-infovore_738dc2_c2d27dharuhi#src#main#java#com#ontology2#haruhi#FlowApp.txt   
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+vi Activiti-Activiti_bb99d5_028907modules#activiti-engine#src#main#java#org#activiti#engine#impl#cmd#StartProcessInstanceCmd.txt   
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+vi FasterXML-jackson-databind_70d961_386e9fsrc#main#java#com#fasterxml#jackson#databind#node#MissingNode.txt   
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+vi cismet-cismet-gui-commons_b5f030_968a7asrc#main#java#de#cismet#tools#gui#downloadmanager#DownloadManager.txt   
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+vi perfectsense-dari_b1dd68_38e97autil#src#main#java#com#psddev#dari#util#HtmlGrid.txt   
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+vi GenomicParisCentre-eoulsan_6c1e13_48e0e6src#main#java#fr#ens#transcriptome#eoulsan#bio#expressioncounters#HTSeqUtils.txt   
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+vi Xephi-AuthMeReloaded_638374_81de64src#main#java#fr#xephi#authme#cache#backup#JsonCache.txt   
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+vi apache-jackrabbit_a4dea6_3dcb77jackrabbit-spi-commons#src#main#java#org#apache#jackrabbit#spi#commons#EventImpl.txt   
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+vi owlcs-owlapi_d02ad0_de7eb1api#src#main#java#org#semanticweb#owlapi#util#AutoIRIMapper.txt   
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+vi owlcs-owlapi_d02ad0_de7eb1api#src#main#java#org#semanticweb#owlapi#util#AutoIRIMapper.txt   
+ :    245   :   277
+vi marschraner-svm_3d88e0_d7c818src#main#java#ch#metzenthin#svm#ui#control#DispensationenController.txt   
+ :    91   :   92
+vi marschraner-svm_3d88e0_d7c818src#main#java#ch#metzenthin#svm#ui#control#DispensationenController.txt   
+ :    110   :   111
+vi forcedotcom-phoenix_bd4571_400451src#main#java#com#salesforce#phoenix#util#CSVLoader.txt   
+ :    99   :   140
+vi maxymania-jxta-jxse_e946de_837e2fsrc#main#java#net#jxta#impl#endpoint#tcp#TcpTransport.txt   
+ :    383   :   646
+vi ClemsonRSRG-RESOLVE_7d3e7b_c17b16src#main#java#edu#clemson#cs#r2jt#congruenceclassprover#TheoremCongruenceClosureImpl.txt   
+ :    113   :   143
+vi GenomicParisCentre-eoulsan_a35877_3ab32bsrc#main#java#fr#ens#transcriptome#eoulsan#MainHadoop.txt   
+ :    97   :   117
+vi tastybento-askyblock_14bc00_2074a1src#com#wasteofplastic#askyblock#Locale.txt   
+ :    1032   :   1036
+vi mebigfatguy-fb-contrib_1f77c9_da2207src#com#mebigfatguy#fbcontrib#detect#NeedlessMemberCollectionSynchronization.txt   
+ :    271   :   342
+vi apache-pdfbox_1c4cc8_a4b86epdfbox#src#main#java#org#apache#pdfbox#pdmodel#PDDocument.txt   
+ :    1153   :   1177
+vi hector-client-hector_432b0a_68350dsrc#main#java#me#prettyprint#cassandra#service#CassandraClientPoolImpl.txt   
+ :    154   :   175
+vi hector-client-hector_432b0a_68350dsrc#main#java#me#prettyprint#cassandra#service#CassandraClientPoolImpl.txt   
+ :    167   :   175
+vi ClemsonRSRG-RESOLVE_d17ca5_fb5773src#main#java#edu#clemson#cs#r2jt#congruenceclassprover#SMTProver.txt   
+ :    373   :   384
+vi ClemsonRSRG-RESOLVE_d17ca5_fb5773src#main#java#edu#clemson#cs#r2jt#congruenceclassprover#SMTProver.txt   
+ :    373   :   384
+vi ClemsonRSRG-RESOLVE_0bd15c_9b1922src#main#java#edu#clemson#cs#r2jt#vcgeneration#VCGenerator.txt   
+ :    100   :   106
+vi ClemsonRSRG-RESOLVE_0bd15c_9b1922src#main#java#edu#clemson#cs#r2jt#vcgeneration#VCGenerator.txt   
+ :    98   :   106
+vi jeremylong-DependencyCheck_96bdd8_8315d4src#main#java#org#codesecure#dependencycheck#utils#Downloader.txt   
+ :    127   :   160
+vi Activiti-Activiti_f6c242_fc85e3modules#activiti-engine#src#main#java#org#activiti#engine#impl#persistence#entity#ExecutionEntity.txt   
+ :    821   :   825
+vi sugarcrm-candybean_f4f44f_c2f96csrc#main#java#com#sugarcrm#candybean#automation#webdriver#WebDriverInterface.txt   
+ :    88   :   96
+vi mebigfatguy-fb-contrib_1f77c9_da2207src#com#mebigfatguy#fbcontrib#detect#UnusedParameter.txt   
+ :    162   :   233
+vi diirt-graphene_ce2290_3e772cgraphene#src#main#java#org#epics#graphene#IntensityGraph2DRenderer.txt   
+ :    635   :   695
+vi diirt-graphene_ce2290_3e772cgraphene#src#main#java#org#epics#graphene#IntensityGraph2DRenderer.txt   
+ :    600   :   695
+vi imCodePartnerAB-imcms_1efea3_723088server#src#imcode#server#user#saml2#SAMLSPFilter.txt   
+ :    35   :   108
+vi imCodePartnerAB-imcms_1efea3_723088server#src#imcode#server#user#saml2#SAMLSPFilter.txt   
+ :    35   :   108
+vi perfectsense-dari_a85606_97d787util#src#main#java#com#psddev#dari#util#HtmlGrid.txt   
+ :    68   :   119
+vi ClemsonRSRG-RESOLVE_d17ca5_646cdcsrc#main#java#edu#clemson#cs#r2jt#congruenceclassprover#SMTProver.txt   
+ :    373   :   384
+vi UniTime-unitime_1e3653_df4b93JavaSource#org#unitime#timetable#action#InstructionalOfferingConfigEditAction.txt   
+ :    873   :   967
+vi UniTime-unitime_1e3653_df4b93JavaSource#org#unitime#timetable#action#InstructionalOfferingConfigEditAction.txt   
+ :    873   :   967
+vi square-dagger_c1c7d6_a081fbsrc#main#java#com#squareup#injector#internal#AtInjectBinding.txt   
+ :    105   :   113
+vi soluvas-soluvas-framework_9167f1_36af25image#src#main#java#org#soluvas#image#impl#BlitlineTransformerImpl.txt   
+ :    342   :   421
+vi soluvas-soluvas-framework_9167f1_36af25image#src#main#java#org#soluvas#image#impl#BlitlineTransformerImpl.txt   
+ :    342   :   421
+vi soluvas-soluvas-framework_9167f1_36af25image#src#main#java#org#soluvas#image#impl#BlitlineTransformerImpl.txt   
+ :    342   :   421
+vi ClemsonRSRG-RESOLVE_8b61ff_2ec633src#main#java#edu#clemson#cs#r2jt#absyn#DotExp.txt   
+ :    342   :   441
+vi ClemsonRSRG-RESOLVE_8b61ff_2ec633src#main#java#edu#clemson#cs#r2jt#absyn#DotExp.txt   
+ :    342   :   441
+vi openpnp-openpnp_4f063f_572f23src#main#java#org#openpnp#model#Configuration.txt   
+ :    462   :   483
+vi perfectsense-dari_5f098c_641bc2util#src#main#java#com#psddev#dari#util#StringUtils.txt   
+ :    276   :   284
+vi tastybento-askyblock_14fc49_07c17esrc#com#wasteofplastic#askyblock#Locale.txt   
+ :    1032   :   1036
+vi Bukkit-Bukkit_5d1835_89cba4src#main#java#org#bukkit#plugin#java#JavaPluginLoader.txt   
+ :    122   :   184
+vi greese-dasein-cloud-azure_855860_ab16f5src#main#java#org#dasein#cloud#azure#compute#image#AzureOSImage.txt   
+ :    396   :   441
+vi greese-dasein-cloud-azure_855860_ab16f5src#main#java#org#dasein#cloud#azure#compute#image#AzureOSImage.txt   
+ :    209   :   276
+vi davidmoten-rtree_61b499_2f6936src#main#java#com#github#davidmoten#rtree#SelectorMinimalAreaIncrease.txt   
+ :    32   :   40
+vi shabbies-clockwork_f76471_4e3ac8src#main#java#servlet#FacebookLoginServlet.txt   
+ :    88   :   120
+vi SomMeri-less4j_c50b68_198ea1src#main#java#com#github#sommeri#less4j#core#compiler#expressions#ExpressionEvaluator.txt   
+ :    182   :   225
+vi mebigfatguy-fb-contrib_532550_02ebfbsrc#com#mebigfatguy#fbcontrib#detect#CommonsStringBuilderToString.txt   
+ :    88   :   166
+vi jankotek-MapDB_5bcbe5_6d6e69src#main#java#org#mapdb#WriteAheadLog.txt   
+ :    610   :   625
+vi simoc-csvjdbc_ac0ec3_3afaf4src#main#java#org#relique#jdbc#csv#BinaryOperation.txt   
+ :    100   :   243
+vi mojohaus-nbm-maven-plugin_7f3122_864467src#main#java#org#codehaus#mojo#nbm#CreateWebstartAppMojo.txt   
+ :    107   :   360
+vi mojohaus-nbm-maven-plugin_7f3122_864467src#main#java#org#codehaus#mojo#nbm#CreateWebstartAppMojo.txt   
+ :    107   :   360
+vi mojohaus-nbm-maven-plugin_7f3122_864467src#main#java#org#codehaus#mojo#nbm#CreateWebstartAppMojo.txt   
+ :    107   :   360
+vi mojohaus-nbm-maven-plugin_7f3122_864467src#main#java#org#codehaus#mojo#nbm#CreateWebstartAppMojo.txt   
+ :    107   :   360
+vi mojohaus-nbm-maven-plugin_7f3122_864467src#main#java#org#codehaus#mojo#nbm#CreateWebstartAppMojo.txt   
+ :    107   :   360
+vi mojohaus-nbm-maven-plugin_7f3122_864467src#main#java#org#codehaus#mojo#nbm#CreateWebstartAppMojo.txt   
+ :    107   :   360
+vi mojohaus-nbm-maven-plugin_7f3122_864467src#main#java#org#codehaus#mojo#nbm#CreateWebstartAppMojo.txt   
+ :    107   :   360
+vi mojohaus-nbm-maven-plugin_7f3122_864467src#main#java#org#codehaus#mojo#nbm#CreateWebstartAppMojo.txt   
+ :    107   :   360
+vi mojohaus-nbm-maven-plugin_7f3122_864467src#main#java#org#codehaus#mojo#nbm#CreateWebstartAppMojo.txt   
+ :    107   :   360
+vi mojohaus-nbm-maven-plugin_7f3122_864467src#main#java#org#codehaus#mojo#nbm#CreateWebstartAppMojo.txt   
+ :    107   :   360
+vi graphhopper-graphhopper_66910e_4002edsrc#main#java#de#jetsli#graph#routing#util#RoutingAlgorithmIntegrationTests.txt   
+ :    115   :   153
+vi minusone13-InvoicingSystem_528e6e_de3693src#main#java#businesslogic#financialbillbl#StubReceiptBill.txt   
+ :    46   :   50
+vi sboesebeck-morphium_721c29_2b6fd8src#de#caluga#morphium#writer#WriterImpl.txt   
+ :    885   :   910
+vi sboesebeck-morphium_721c29_2b6fd8src#de#caluga#morphium#writer#WriterImpl.txt   
+ :    896   :   910
+vi sboesebeck-morphium_721c29_2b6fd8src#de#caluga#morphium#writer#WriterImpl.txt   
+ :    674   :   715
+vi rapla-rapla_5f89ec_40e4b2src#main#java#org#rapla#server#internal#ServerServiceImpl.txt   
+ :    571   :   674
+vi rapla-rapla_5f89ec_40e4b2src#main#java#org#rapla#server#internal#ServerServiceImpl.txt   
+ :    669   :   674
+vi minusone13-InvoicingSystem_570e3b_ef6002src#main#java#presentation#managerui#JPBill.txt   
+ :    1057   :   1067
+vi minusone13-InvoicingSystem_570e3b_ef6002src#main#java#presentation#managerui#JPBill.txt   
+ :    1058   :   1067
+vi minusone13-InvoicingSystem_570e3b_ef6002src#main#java#presentation#managerui#JPBill.txt   
+ :    1056   :   1067
+vi GenomicParisCentre-eoulsan_a77179_52f15csrc#main#java#fr#ens#transcriptome#eoulsan#bio#expressioncounters#HTSeqUtils.txt   
+ :    313   :   340
+vi Eluinhost-pluginframework_a9e436_802979src#main#java#com#publicuhc#pluginframework#commands#routing#DefaultRouter.txt   
+ :    189   :   206
+vi ClemsonRSRG-RESOLVE_edf379_deefd5src#main#java#edu#clemson#cs#r2jt#vcgeneration#VCGenerator.txt   
+ :    2372   :   2561
+vi ClemsonRSRG-RESOLVE_edf379_deefd5src#main#java#edu#clemson#cs#r2jt#vcgeneration#VCGenerator.txt   
+ :    2372   :   2561
+vi ClemsonRSRG-RESOLVE_edf379_deefd5src#main#java#edu#clemson#cs#r2jt#vcgeneration#VCGenerator.txt   
+ :    2372   :   2561
+vi ClemsonRSRG-RESOLVE_edf379_deefd5src#main#java#edu#clemson#cs#r2jt#vcgeneration#VCGenerator.txt   
+ :    2372   :   2561
+vi ClemsonRSRG-RESOLVE_edf379_deefd5src#main#java#edu#clemson#cs#r2jt#vcgeneration#VCGenerator.txt   
+ :    2372   :   2561
+vi ClemsonRSRG-RESOLVE_edf379_deefd5src#main#java#edu#clemson#cs#r2jt#vcgeneration#VCGenerator.txt   
+ :    2372   :   2561
+vi soluvas-soluvas-framework_d4781b_bc4308push#src#main#java#org#soluvas#push#QueuedPushListener.txt   
+ :    34   :   45
+vi renepickhardt-generalized-language-modeling-toolkit_501d3c_b72164src#main#java#de#glmtk#options#QueryModeOption.txt   
+ :    26   :   27
+vi sboesebeck-morphium_0bfd47_2e91c9src#de#caluga#morphium#query#QueryImpl.txt   
+ :    255   :   282
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_ae39ca_57821esrc#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    216   :   272
+vi hector-client-hector_848f3a_893460src#main#java#me#prettyprint#cassandra#service#CassandraClientPoolImpl.txt   
+ :    167   :   175
+vi hector-client-hector_848f3a_893460src#main#java#me#prettyprint#cassandra#service#CassandraClientPoolImpl.txt   
+ :    154   :   175
+vi GrizzlyNIO-grizzly-mirror_c2cb0b_77da91modules#http-server#src#main#java#org#glassfish#grizzly#http#server#Request.txt   
+ :    490   :   528
+vi GenomicParisCentre-eoulsan_dde9b7_3cf6cfsrc#main#java#fr#ens#transcriptome#eoulsan#bio#expressioncounters#HTSeqUtils.txt   
+ :    313   :   340
+vi rage-tmc-cli_bac400_314ee2src#main#java#hy#tmc#cli#frontend#communication#commands#SendFeedback.txt   
+ :    33   :   45
+vi rage-tmc-cli_bac400_314ee2src#main#java#hy#tmc#cli#frontend#communication#commands#SendFeedback.txt   
+ :    33   :   45
+vi lrozenblyum-chess_cb85d7_b33057src#main#java#com#leokom#chess#player#legalMover#LegalPlayer.txt   
+ :    37   :   47
+vi perfectsense-dari_e1af9d_e5295dutil#src#main#java#com#psddev#dari#util#HtmlGrid.txt   
+ :    68   :   119
+vi mebigfatguy-fb-contrib_cd441f_d9c646src#com#mebigfatguy#fbcontrib#detect#PossibleConstantAllocationInLoop.txt   
+ :    103   :   268
+vi mebigfatguy-fb-contrib_ba6525_3e56b6src#com#mebigfatguy#fbcontrib#detect#NeedlessMemberCollectionSynchronization.txt   
+ :    271   :   342
+vi minusone13-InvoicingSystem_4ad210_4cf727src#main#java#businesslogic#examinebl#StubBillPool.txt   
+ :    41   :   48
+vi minusone13-InvoicingSystem_4ad210_4cf727src#main#java#businesslogic#examinebl#StubBillPool.txt   
+ :    42   :   48
+vi valis-vclang_e07cca_41f929src#main#java#com#jetbrains#jetpad#vclang#term#expr#visitor#ReplaceDefCallVisitor.txt   
+ :    68   :   83
+vi SophieKoonin-JavaDecaf_66b271_6ac0c2src#main#java#parser#JavaDecafCompiler.txt   
+ :    111   :   135
+vi graphhopper-graphhopper_79f05c_fbfffbsrc#main#java#com#graphhopper#routing#DijkstraBidirection.txt   
+ :    178   :   190
+vi slipcor-pvparena_e62289_bcee22src#net#slipcor#pvparena#commands#PAA_Install.txt   
+ :    187   :   206
+vi slipcor-pvparena_e62289_bcee22src#net#slipcor#pvparena#commands#PAA_Install.txt   
+ :    187   :   206
+vi rapla-rapla_9b1a3d_fd1511src#main#java#org#rapla#server#internal#ServerServiceImpl.txt   
+ :    669   :   674
+vi rapla-rapla_9b1a3d_fd1511src#main#java#org#rapla#server#internal#ServerServiceImpl.txt   
+ :    571   :   674
+vi PEXPlugins-PermissionsEx_17405a_2fe5a1src#main#java#ru#tehkode#permissions#backends#file#FileBackend.txt   
+ :    195   :   201
+vi openmicroscopy-bioformats_bc8114_3f0b2bcomponents#bio-formats#src#loci#formats#in#ZeissLSMReader.txt   
+ :    1491   :   1857
+vi openmicroscopy-bioformats_bc8114_3f0b2bcomponents#bio-formats#src#loci#formats#in#ZeissLSMReader.txt   
+ :    1491   :   1857
+vi openmicroscopy-bioformats_bc8114_3f0b2bcomponents#bio-formats#src#loci#formats#in#ZeissLSMReader.txt   
+ :    1491   :   1857
+vi openmicroscopy-bioformats_bc8114_3f0b2bcomponents#bio-formats#src#loci#formats#in#ZeissLSMReader.txt   
+ :    1491   :   1857
+vi openmicroscopy-bioformats_bc8114_3f0b2bcomponents#bio-formats#src#loci#formats#in#ZeissLSMReader.txt   
+ :    1491   :   1857
+vi openmicroscopy-bioformats_bc8114_3f0b2bcomponents#bio-formats#src#loci#formats#in#ZeissLSMReader.txt   
+ :    1491   :   1857
+vi openmicroscopy-bioformats_bc8114_3f0b2bcomponents#bio-formats#src#loci#formats#in#ZeissLSMReader.txt   
+ :    1491   :   1857
+vi openmicroscopy-bioformats_bc8114_3f0b2bcomponents#bio-formats#src#loci#formats#in#ZeissLSMReader.txt   
+ :    1491   :   1857
+vi openmicroscopy-bioformats_bc8114_3f0b2bcomponents#bio-formats#src#loci#formats#in#ZeissLSMReader.txt   
+ :    1491   :   1857
+vi openmicroscopy-bioformats_bc8114_3f0b2bcomponents#bio-formats#src#loci#formats#in#ZeissLSMReader.txt   
+ :    1491   :   1857
+vi openmicroscopy-bioformats_bc8114_3f0b2bcomponents#bio-formats#src#loci#formats#in#ZeissLSMReader.txt   
+ :    1489   :   1857
+vi openmicroscopy-bioformats_bc8114_3f0b2bcomponents#bio-formats#src#loci#formats#in#ZeissLSMReader.txt   
+ :    1489   :   1857
+vi openmicroscopy-bioformats_bc8114_3f0b2bcomponents#bio-formats#src#loci#formats#in#ZeissLSMReader.txt   
+ :    1489   :   1857
+vi openmicroscopy-bioformats_bc8114_3f0b2bcomponents#bio-formats#src#loci#formats#in#ZeissLSMReader.txt   
+ :    1489   :   1857
+vi openmicroscopy-bioformats_bc8114_3f0b2bcomponents#bio-formats#src#loci#formats#in#ZeissLSMReader.txt   
+ :    1489   :   1857
+vi openmicroscopy-bioformats_bc8114_3f0b2bcomponents#bio-formats#src#loci#formats#in#ZeissLSMReader.txt   
+ :    1489   :   1857
+vi openmicroscopy-bioformats_bc8114_3f0b2bcomponents#bio-formats#src#loci#formats#in#ZeissLSMReader.txt   
+ :    1489   :   1857
+vi openmicroscopy-bioformats_bc8114_3f0b2bcomponents#bio-formats#src#loci#formats#in#ZeissLSMReader.txt   
+ :    1489   :   1857
+vi openmicroscopy-bioformats_bc8114_3f0b2bcomponents#bio-formats#src#loci#formats#in#ZeissLSMReader.txt   
+ :    1489   :   1857
+vi openmicroscopy-bioformats_bc8114_3f0b2bcomponents#bio-formats#src#loci#formats#in#ZeissLSMReader.txt   
+ :    1489   :   1857
+vi openmicroscopy-bioformats_bc8114_3f0b2bcomponents#bio-formats#src#loci#formats#in#ZeissLSMReader.txt   
+ :    1490   :   1857
+vi openmicroscopy-bioformats_bc8114_3f0b2bcomponents#bio-formats#src#loci#formats#in#ZeissLSMReader.txt   
+ :    1490   :   1857
+vi openmicroscopy-bioformats_bc8114_3f0b2bcomponents#bio-formats#src#loci#formats#in#ZeissLSMReader.txt   
+ :    1490   :   1857
+vi openmicroscopy-bioformats_bc8114_3f0b2bcomponents#bio-formats#src#loci#formats#in#ZeissLSMReader.txt   
+ :    1490   :   1857
+vi openmicroscopy-bioformats_bc8114_3f0b2bcomponents#bio-formats#src#loci#formats#in#ZeissLSMReader.txt   
+ :    1490   :   1857
+vi openmicroscopy-bioformats_bc8114_3f0b2bcomponents#bio-formats#src#loci#formats#in#ZeissLSMReader.txt   
+ :    1490   :   1857
+vi openmicroscopy-bioformats_bc8114_3f0b2bcomponents#bio-formats#src#loci#formats#in#ZeissLSMReader.txt   
+ :    1490   :   1857
+vi openmicroscopy-bioformats_bc8114_3f0b2bcomponents#bio-formats#src#loci#formats#in#ZeissLSMReader.txt   
+ :    1490   :   1857
+vi openmicroscopy-bioformats_bc8114_3f0b2bcomponents#bio-formats#src#loci#formats#in#ZeissLSMReader.txt   
+ :    1490   :   1857
+vi openmicroscopy-bioformats_bc8114_3f0b2bcomponents#bio-formats#src#loci#formats#in#ZeissLSMReader.txt   
+ :    1490   :   1857
+vi imagej-imagej-legacy_1b7293_c441b8src#main#java#net#imagej#legacy#DefaultLegacyHooks.txt   
+ :    474   :   512
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_0a9718_d81496src#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    377   :   439
+vi svn2github-forge_a48f1b_540c47src#main#java#forge#card#ability#AbilityUtils.txt   
+ :    520   :   568
+vi telefonicaid-fiware-cygnus_ac005b_b18a77src#main#java#com#telefonica#iot#cygnus#backends#orion#OrionStats.txt   
+ :    84   :   149
+vi apache-pdfbox_bfa7a6_77a858pdfbox#src#main#java#org#apache#pdfbox#pdmodel#fdf#FDFAnnotationInk.txt   
+ :    91   :   112
+vi minusone13-InvoicingSystem_88cbd6_4d2fb8src#main#java#presentation#managerui#JPBill.txt   
+ :    1107   :   1117
+vi minusone13-InvoicingSystem_88cbd6_4d2fb8src#main#java#presentation#managerui#JPBill.txt   
+ :    1105   :   1117
+vi minusone13-InvoicingSystem_88cbd6_4d2fb8src#main#java#presentation#managerui#JPBill.txt   
+ :    1104   :   1117
+vi minusone13-InvoicingSystem_88cbd6_4d2fb8src#main#java#presentation#managerui#JPBill.txt   
+ :    1106   :   1117
+vi minusone13-InvoicingSystem_88cbd6_4d2fb8src#main#java#presentation#managerui#JPBill.txt   
+ :    1108   :   1117
+vi perfectsense-dari_0d13d0_bbe905util#src#main#java#com#psddev#dari#util#HtmlGrid.txt   
+ :    68   :   119
+vi OpenTreeOfLife-treemachine_832013_74421fsrc#main#java#opentree#MainRunner.txt   
+ :    1034   :   1101
+vi OpenTreeOfLife-treemachine_832013_74421fsrc#main#java#opentree#MainRunner.txt   
+ :    1859   :   1940
+vi OpenTreeOfLife-treemachine_832013_74421fsrc#main#java#opentree#MainRunner.txt   
+ :    1887   :   1940
+vi FIWARE-Middleware-KIARA_b53d0e_8c3a0fsrc#main#java#org#fiware#kiara#ps#rtps#builtin#data#ParticipantProxyData.txt   
+ :    75   :   88
+vi FIWARE-Middleware-KIARA_b53d0e_8c3a0fsrc#main#java#org#fiware#kiara#ps#rtps#builtin#data#ParticipantProxyData.txt   
+ :    75   :   88
+vi openpnp-openpnp_6cda9f_971cf6src#main#java#org#openpnp#spi#JobPlanner.txt   
+ :    33   :   37
+vi AMOSTeam3-amos-ss15-proj3_2a352f_d18ea2src#main#java#de#fau#osr#app#PostTraceabilityApp.txt   
+ :    69   :   116
+vi jcabi-jcabi-github_b12a7c_26cda5src#main#java#com#jcabi#github#mock#MkOrganizations.txt   
+ :    116   :   141
+vi minusone13-InvoicingSystem_2bbbeb_cb476fsrc#main#java#userui#TestFrame.txt   
+ :    28   :   41
+vi Activiti-Activiti_724655_206c08modules#activiti-bpmn-converter#src#main#java#org#activiti#bpmn#converter#UserTaskXMLConverter.txt   
+ :    274   :   279
+vi Activiti-Activiti_ad0c9e_36f30cmodules#activiti-engine#src#main#java#org#activiti#engine#impl#persistence#entity#ExecutionEntity.txt   
+ :    821   :   825
+vi gertvv-addis_ce0333_2cc9e7src#main#java#org#drugis#addis#entities#DomainData.txt   
+ :    166   :   206
+vi karamelchef-karamel_83be23_00acaakaramel-core#src#main#java#se#kth#karamel#backend#machines#MachinesMonitor.txt   
+ :    93   :   125
+vi karamelchef-karamel_83be23_00acaakaramel-core#src#main#java#se#kth#karamel#backend#machines#MachinesMonitor.txt   
+ :    93   :   125
+vi instance01-MinigamesAPI_58d73c_34d534API#src#main#java#com#comze_instancelabs#minigamesapi#achievements#ArenaAchievements.txt   
+ :    27   :   33
+vi FIWARE-Middleware-KIARA_de120e_734ddfsrc#main#java#org#fiware#kiara#ps#rtps#participant#RTPSParticipant.txt   
+ :    114   :   158
+vi FIWARE-Middleware-KIARA_de120e_734ddfsrc#main#java#org#fiware#kiara#ps#rtps#participant#RTPSParticipant.txt   
+ :    114   :   158
+vi apache-pdfbox_bd2126_59dad3fontbox#src#main#java#org#apache#fontbox#ttf#NamingTable.txt   
+ :    60   :   155
+vi redpen-cc-redpen_9d74f9_337c0fsrc#main#java#org#unigram#docvalidator#util#CharacterTable.txt   
+ :    50   :   55
+vi minusone13-InvoicingSystem_b5cb78_388304src#main#java#businesslogic#iquirybl#Inquiry.txt   
+ :    96   :   312
+vi minusone13-InvoicingSystem_b5cb78_388304src#main#java#businesslogic#iquirybl#Inquiry.txt   
+ :    96   :   312
+vi minusone13-InvoicingSystem_b5cb78_388304src#main#java#businesslogic#iquirybl#Inquiry.txt   
+ :    96   :   312
+vi minusone13-InvoicingSystem_b5cb78_388304src#main#java#businesslogic#iquirybl#Inquiry.txt   
+ :    96   :   312
+vi dcm4che-dcm4che_6df6f5_2688c4dcm4che-core#src#main#java#org#dcm4che#data#Group.txt   
+ :    106   :   128
+vi marklogic-java-client-api_f41a0e_0de5d3src#main#java#com#marklogic#client#config#QueryOptions.txt   
+ :    3193   :   3194
+vi ColoradoSchoolOfMines-interface_sdk_1355b3_79bcc8src#main#java#edu#mines#acmX#exhibit#stdlib#scoring#ScoreSaver.txt   
+ :    112   :   142
+vi Activiti-Activiti_bb99d5_9f596dmodules#activiti-engine#src#main#java#org#activiti#engine#impl#cmd#StartProcessInstanceByMessageCmd.txt   
+ :    87   :   110
+vi Xephi-AuthMeReloaded_aae78f_6089d4src#main#java#fr#xephi#authme#SendMailSSL.txt   
+ :    94   :   123
+vi 0xCopy-RelaxFactory_0aed13_2f571brxf-server#src#main#java#rxf#server#gen#CouchDriver.txt   
+ :    715   :   767
+vi 0xCopy-RelaxFactory_0aed13_2f571brxf-server#src#main#java#rxf#server#gen#CouchDriver.txt   
+ :    715   :   767
+vi 0xCopy-RelaxFactory_0aed13_2f571brxf-server#src#main#java#rxf#server#gen#CouchDriver.txt   
+ :    823   :   887
+vi 0xCopy-RelaxFactory_0aed13_2f571brxf-server#src#main#java#rxf#server#gen#CouchDriver.txt   
+ :    823   :   887
+vi 0xCopy-RelaxFactory_0aed13_2f571brxf-server#src#main#java#rxf#server#gen#CouchDriver.txt   
+ :    263   :   315
+vi 0xCopy-RelaxFactory_0aed13_2f571brxf-server#src#main#java#rxf#server#gen#CouchDriver.txt   
+ :    263   :   315
+vi 0xCopy-RelaxFactory_0aed13_2f571brxf-server#src#main#java#rxf#server#gen#CouchDriver.txt   
+ :    368   :   411
+vi 0xCopy-RelaxFactory_0aed13_2f571brxf-server#src#main#java#rxf#server#gen#CouchDriver.txt   
+ :    368   :   411
+vi arjovanramshorst-bubble-bobble-sem_aaa245_8b5cb3core#src#main#java#sem#group15#bubblebobble#core#BubbleBobble.txt   
+ :    68   :   73
+vi arjovanramshorst-bubble-bobble-sem_aaa245_8b5cb3core#src#main#java#sem#group15#bubblebobble#core#BubbleBobble.txt   
+ :    65   :   73
+vi arjovanramshorst-bubble-bobble-sem_aaa245_8b5cb3core#src#main#java#sem#group15#bubblebobble#core#BubbleBobble.txt   
+ :    66   :   73
+vi perfectsense-dari_7317b7_72698eutil#src#main#java#com#psddev#dari#util#HtmlGrid.txt   
+ :    67   :   118
+vi digipost-digipost-api-client-java_0fc290_183e80src#main#java#no#digipost#api#client#filters#LoggingFilter.txt   
+ :    229   :   235
+vi jenkinsci-remoting_3cf42c_d5ebbesrc#main#java#hudson#remoting#Channel.txt   
+ :    998   :   1003
+vi droolsjbpm-optaplanner_15f1a4_4def4cdrools-planner-core#src#main#java#org#drools#planner#core#move#generic#GenericChainedSwapMoveFactory.txt   
+ :    53   :   68
+vi droolsjbpm-optaplanner_15f1a4_4def4cdrools-planner-core#src#main#java#org#drools#planner#core#move#generic#GenericChainedSwapMoveFactory.txt   
+ :    56   :   68
+vi shilad-wikibrain_962b07_7602fdwikibrain-spatial#src#main#java#org#wikibrain#spatial#loader#GADMConverter.txt   
+ :    72   :   94
+vi shilad-wikibrain_962b07_7602fdwikibrain-spatial#src#main#java#org#wikibrain#spatial#loader#GADMConverter.txt   
+ :    63   :   94
+vi finmath-finmath-lib_c30dbe_0f31a0src#main#java6#net#finmath#montecarlo#interestrate#modelplugins#AbstractLIBORCovarianceModelParametric.txt   
+ :    101   :   198
+vi rapla-rapla_2b21c1_8e108fsrc#main#java#org#rapla#server#internal#ServerServiceImpl.txt   
+ :    669   :   674
+vi rapla-rapla_2b21c1_8e108fsrc#main#java#org#rapla#server#internal#ServerServiceImpl.txt   
+ :    571   :   674
+vi mebigfatguy-fb-contrib_cc0d6b_ccf104src#com#mebigfatguy#fbcontrib#detect#SuspiciousUninitializedArray.txt   
+ :    108   :   270
+vi PEXPlugins-PermissionsEx_a2cb99_74edc7src#main#java#ru#tehkode#permissions#bukkit#PermissionsEx.txt   
+ :    80   :   107
+vi ClemsonRSRG-RESOLVE_4bdbdd_fbc3cbsrc#main#java#edu#clemson#cs#r2jt#vcgeneration#VCGenerator.txt   
+ :    2514   :   2668
+vi SpigotMC-Spigot-API_63e6ef_fc8d08src#main#java#org#bukkit#event#block#SignChangeEvent.txt   
+ :    17   :   19
+vi mebigfatguy-fb-contrib_ba6525_3e56b6src#com#mebigfatguy#fbcontrib#detect#LingeringGraphicsObjects.txt   
+ :    92   :   159
+vi Activiti-Activiti_768522_2e111emodules#activiti-engine#src#main#java#org#activiti#engine#impl#bpmn#DataOutputAssociation.txt   
+ :    31   :   32
+vi Activiti-Activiti_768522_2e111emodules#activiti-engine#src#main#java#org#activiti#engine#impl#bpmn#DataOutputAssociation.txt   
+ :    30   :   32
+vi JolantaWojcik-biojavaOwn_4bf282_65926cbiojava3-core#src#main#java#org#biojava3#core#sequence#loader#UniprotProxySequenceReader.txt   
+ :    385   :   410
+vi Activiti-Activiti_724655_206c08modules#activiti-engine#src#main#java#org#activiti#engine#impl#persistence#entity#ExecutionEntity.txt   
+ :    821   :   825
+vi maxymania-jxta-jxse_e946de_837e2fsrc#main#java#net#jxta#impl#cm#Srdi.txt   
+ :    118   :   125
+vi ClemsonRSRG-RESOLVE_b589d8_15f21fsrc#main#java#edu#clemson#cs#r2jt#translation#PrettyJavaTranslation.txt   
+ :    56   :   64
+vi mebigfatguy-fb-contrib_ba6525_3e56b6src#com#mebigfatguy#fbcontrib#detect#SuspiciousUninitializedArray.txt   
+ :    108   :   270
+vi apache-archiva_5e6fb5_398db2maven-repository-indexer#src#main#java#org#apache#maven#repository#indexing#AbstractRepositoryIndexer.txt   
+ :    118   :   125
+vi ClemsonRSRG-RESOLVE_55d892_017bb2src#main#java#edu#clemson#cs#r2jt#congruenceclassprover#SMTProver.txt   
+ :    291   :   329
+vi niyue-coding_557f95_9d7bc1src#main#java#com#niyue#coding#leetcode#sortedlisttobst#Solution.txt   
+ :    32   :   38
+vi niyue-coding_557f95_9d7bc1src#main#java#com#niyue#coding#leetcode#sortedlisttobst#Solution.txt   
+ :    33   :   38
+vi GenomicParisCentre-eoulsan_4f3009_571523src#main#java#fr#ens#transcriptome#eoulsan#bio#expressioncounters#HTSeqUtils.txt   
+ :    313   :   340
+vi valis-vclang_71198b_56e899src#main#java#com#jetbrains#jetpad#vclang#parser#BuildVisitor.txt   
+ :    568   :   576
+vi Activiti-Activiti_fce83e_08c2b8modules#activiti-engine#src#main#java#org#activiti#engine#impl#persistence#entity#ExecutionEntity.txt   
+ :    821   :   825
+vi perfectsense-dari_f56822_6f3e52util#src#main#java#com#psddev#dari#util#HtmlGrid.txt   
+ :    68   :   119
+vi digipost-digipost-api-client-java_0d2d59_008c9asrc#main#java#no#digipost#api#client#representations#Message.txt   
+ :    175   :   181
+vi digipost-digipost-api-client-java_0d2d59_008c9asrc#main#java#no#digipost#api#client#representations#Message.txt   
+ :    176   :   181
+vi mebigfatguy-fb-contrib_cc0d6b_ccf104src#com#mebigfatguy#fbcontrib#detect#LingeringGraphicsObjects.txt   
+ :    92   :   159
+vi perfectsense-dari_b37d2f_d3fa3autil#src#main#java#com#psddev#dari#util#HtmlGrid.txt   
+ :    67   :   118
+vi ansell-owlapi_d02ad0_de7eb1api#src#main#java#org#semanticweb#owlapi#util#AutoIRIMapper.txt   
+ :    245   :   277
+vi ansell-owlapi_d02ad0_de7eb1api#src#main#java#org#semanticweb#owlapi#util#AutoIRIMapper.txt   
+ :    245   :   277
+vi OpenTreeOfLife-treemachine_805970_7ad1e3src#main#java#opentree#AncestorUtil.txt   
+ :    214   :   242
+vi ClemsonRSRG-RESOLVE_1747e0_cd282asrc#main#java#edu#clemson#cs#r2jt#congruenceclassprover#CongruenceClassProver.txt   
+ :    403   :   412
+vi ClemsonRSRG-RESOLVE_1747e0_cd282asrc#main#java#edu#clemson#cs#r2jt#congruenceclassprover#CongruenceClassProver.txt   
+ :    403   :   412
+vi ClemsonRSRG-RESOLVE_1747e0_cd282asrc#main#java#edu#clemson#cs#r2jt#congruenceclassprover#CongruenceClassProver.txt   
+ :    403   :   412
+vi maxymania-jxta-jxse_dcfde4_379efcsrc#main#java#net#jxta#impl#peergroup#StdPeerGroup.txt   
+ :    209   :   236
+vi apache-maven-shared_8df6c8_f5cdabsrc#main#java#org#apache#maven#shared#model#fileset#mappers#MapperUtil.txt   
+ :    50   :   81
+vi apache-wss4j_39f1ef_845738src#main#java#org#apache#ws#security#message#token#SecurityTokenReference.txt   
+ :    264   :   274
+vi lennartj-jaxb2-maven-plugin_1c78d5_99642asrc#main#java#org#codehaus#mojo#jaxb2#AbstractXjcMojo.txt   
+ :    825   :   832
+vi ClemsonRSRG-RESOLVE_6745c0_c5a4a5src#main#java#edu#clemson#cs#r2jt#congruenceclassprover#ConjunctionOfNormalizedAtomicExpressions.txt   
+ :    135   :   164
+vi mebigfatguy-fb-contrib_cc0d6b_ccf104src#com#mebigfatguy#fbcontrib#detect#ConstantListIndex.txt   
+ :    138   :   202
+vi ansell-owlapi_37893a_b9052etools#src#main#java#com#clarkparsia#owlapi#explanation#BlackBoxExplanation.txt   
+ :    121   :   132
+vi ansell-owlapi_37893a_b9052etools#src#main#java#com#clarkparsia#owlapi#explanation#BlackBoxExplanation.txt   
+ :    123   :   132
+vi JensBee-QueryClarity_2f8a49_bab509src#main#java#de#unihildesheim#iw#lucene#scoring#clarity#AbstractClarityScoreCalculationBuilder.txt   
+ :    103   :   105
+vi tomp2p-TomP2P_64d188_d371edsrc#main#java#net#tomp2p#rpc#RequestHandlerTCP.txt   
+ :    257   :   264
+vi sbwhitecap-Phex-trunk_073c01_a6a4b3src#main#java#phex#gwebcache#GWebCacheManager.txt   
+ :    177   :   179
+vi fiji-TrackMate3_e08396_8b80bbsrc#main#java#net#trackmate#trackscheme#GraphLayoutOverlay.txt   
+ :    71   :   123
+vi mkovatsc-Californium_79ffc2_b9e772cf-benchmark#src#main#java#ch#ethz#inf#vs#californium#benchmark#WorkQueueExecutor.txt   
+ :    47   :   54
+vi perfectsense-dari_e16902_c6ca78util#src#main#java#com#psddev#dari#util#HtmlGrid.txt   
+ :    68   :   119
+vi cismet-cids-server_f67656_65673dsrc#main#java#Sirius#server#middleware#impls#domainserver#DomainServerImpl.txt   
+ :    1087   :   1106
+vi ClemsonRSRG-RESOLVE_1e7b82_4498c4src#main#java#edu#clemson#cs#r2jt#init2#ResolveCompiler.txt   
+ :    90   :   121
+vi ClemsonRSRG-RESOLVE_1e7b82_4498c4src#main#java#edu#clemson#cs#r2jt#init2#ResolveCompiler.txt   
+ :    90   :   121
+vi roundrop-facebook4j_0ccdfe_297d1ffacebook4j-core#src#main#java#facebook4j#FacebookImpl.txt   
+ :    2332   :   2333
+vi perfectsense-dari_3b5950_fff36autil#src#main#java#com#psddev#dari#util#HtmlGrid.txt   
+ :    68   :   119
+vi SpoutDev-Spout_155178_0528a4src#main#java#org#getspout#api#command#SimpleCommand.txt   
+ :    148   :   181
+vi perfectsense-dari_407b5b_1e7f6futil#src#main#java#com#psddev#dari#util#HtmlGrid.txt   
+ :    68   :   119
+vi mebigfatguy-fb-contrib_1f77c9_da2207src#com#mebigfatguy#fbcontrib#detect#ConstantListIndex.txt   
+ :    138   :   202
+vi google-closure-templates_b3c481_f7492ajava#src#com#google#template#soy#pysrc#internal#GenPyExprsVisitor.txt   
+ :    196   :   199
+vi belaban-JGroups_8797b1_db28afsrc#org#jgroups#stack#RouterStub.txt   
+ :    221   :   222
+vi Activiti-Activiti_7dce14_94b753modules#activiti-engine#src#main#java#org#activiti#engine#impl#persistence#entity#ExecutionEntity.txt   
+ :    821   :   825
+vi aherbert-GDSC-SMLM_c27c0d_2d976bsrc#main#java#gdsc#smlm#ij#plugins#BenchmarkSpotFit.txt   
+ :    280   :   317
+vi aherbert-GDSC-SMLM_c27c0d_2d976bsrc#main#java#gdsc#smlm#ij#plugins#BenchmarkSpotFit.txt   
+ :    280   :   317
+vi finmath-finmath-lib_9eb3ab_326d15src#main#java6#net#finmath#timeseries#models#parametric#DisplacedLognormalARMAGARCH.txt   
+ :    208   :   339
+vi FasterXML-jackson-databind_cecd40_7ed2d0src#main#java#com#fasterxml#jackson#databind#node#MissingNode.txt   
+ :    89   :   90
+vi mebigfatguy-fb-contrib_ba6525_3e56b6src#com#mebigfatguy#fbcontrib#detect#UnusedParameter.txt   
+ :    161   :   232
+vi ClemsonRSRG-RESOLVE_bc3acc_90abbbsrc#main#java#edu#clemson#cs#r2jt#congruenceclassprover#CongruenceClassProver.txt   
+ :    329   :   338
+vi ClemsonRSRG-RESOLVE_bc3acc_90abbbsrc#main#java#edu#clemson#cs#r2jt#congruenceclassprover#CongruenceClassProver.txt   
+ :    329   :   338
+vi ClemsonRSRG-RESOLVE_bc3acc_90abbbsrc#main#java#edu#clemson#cs#r2jt#congruenceclassprover#CongruenceClassProver.txt   
+ :    329   :   338
+vi shilad-wikibrain_97b328_7cca12wikibrain-spatial#src#main#java#org#wikibrain#spatial#cookbook#tflevaluate#TopoEvaluator.txt   
+ :    248   :   291
+vi shilad-wikibrain_97b328_7cca12wikibrain-spatial#src#main#java#org#wikibrain#spatial#cookbook#tflevaluate#TopoEvaluator.txt   
+ :    247   :   291
+vi LEDS-sincap-entities_1e1ffc_426fe6src#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    45   :   66
+vi LEDS-sincap-entities_1e1ffc_426fe6src#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    45   :   66
+vi LEDS-sincap-entities_e711e4_b075c7src#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    28   :   66
+vi LEDS-sincap-entities_e711e4_b075c7src#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    28   :   66
+vi lkroesen-BubbleBobble_701094_3c292dsrc#main#java#website#frontrow#level#Level.txt   
+ :    18   :   20
+vi Poweruser-MinetickMod_2d93aa_95d238src#main#java#net#minecraft#server#RegionFile.txt   
+ :    27   :   88
+vi shilad-wikibrain_d76f8d_2a3796wikibrain-spatial#src#main#java#org#wikibrain#spatial#loader#OSMLayerLoader.txt   
+ :    65   :   103
+vi msokolov-lux_7ca3d3_b7d3b7src#main#java#lux#CachingDocReader.txt   
+ :    110   :   120
+vi perfectsense-dari_d1d982_f87574util#src#main#java#com#psddev#dari#util#HtmlGrid.txt   
+ :    68   :   119
+vi valis-vclang_f6ea6c_dbe85dsrc#main#java#com#jetbrains#jetpad#vclang#module#ModuleLoader.txt   
+ :    130   :   131
+vi maxymania-jxta-jxse_e946de_837e2fsrc#main#java#net#jxta#impl#endpoint#tcp#TcpMessenger.txt   
+ :    219   :   280
+vi apache-uima-ducc_84e25a_57bc13uima-ducc-user#src#main#java#org#apache#uima#ducc#user#jp#UimaProcessContainer.txt   
+ :    449   :   472
+vi antoine-tran-Hedera_f829ae_ddca7cjava#main#org#hedera#mapreduce#io#wikipedia#WikiRevisionRecordReader.txt   
+ :    218   :   291
+vi antoine-tran-Hedera_f829ae_ddca7cjava#main#org#hedera#mapreduce#io#wikipedia#WikiRevisionRecordReader.txt   
+ :    218   :   291
+vi antoine-tran-Hedera_f829ae_ddca7cjava#main#org#hedera#mapreduce#io#wikipedia#WikiRevisionRecordReader.txt   
+ :    218   :   291
+vi tuwiendsg-rSYBL_1dd0e8_4ab925rSYBL-control-service-pom#rSYBL-planning-engine#src#main#java#at#ac#tuwien#dsg#rSybl#planningEngine#adviseEffects#PlanningGreedyWithADVISE.txt   
+ :    161   :   216
+vi GenomicParisCentre-aozan_c3bf6c_76ff05src#main#java#fr#ens#biologie#genomique#aozan#collectors#ReadXMLCollector.txt   
+ :    98   :   121
+vi GenomicParisCentre-aozan_c3bf6c_76ff05src#main#java#fr#ens#biologie#genomique#aozan#collectors#ReadXMLCollector.txt   
+ :    98   :   121
+vi Activiti-Activiti_0ea44a_749e0fmodules#activiti-engine#src#main#java#org#activiti#engine#impl#persistence#entity#ExecutionEntity.txt   
+ :    821   :   825
+vi alibaba-druid_9b8d16_10accbsrc#main#java#com#alibaba#druid#wall#spi#MySqlWallVisitor.txt   
+ :    455   :   472
+vi groovy-GMavenPlus_56c640_881010src#main#java#org#codehaus#gmavenplus#mojo#AbstractToolsMojo.txt   
+ :    67   :   100
+vi anba-es6draft_ed7538_e434ddsrc#main#java#com#github#anba#es6draft#runtime#internal#NativeCalls.txt   
+ :    538   :   548
+vi xetorthio-jedis_c29dd8_226ed2src#main#java#redis#clients#jedis#HostAndPort.txt   
+ :    24   :   34
+vi The-Dream-Team-Tardis_9dc9b2_1098bbsrc#main#java#me#dreamteam#tardis#Database.txt   
+ :    101   :   123
+vi The-Dream-Team-Tardis_9dc9b2_1098bbsrc#main#java#me#dreamteam#tardis#Database.txt   
+ :    101   :   123
+vi apache-hadoop-common_45fd02_64f6fbsrc#main#java#org#apache#hadoop#hbase#ipc#HBaseServer.txt   
+ :    801   :   857
+vi mtedone-podam_8fb31d_9c0d1esrc#main#java#uk#co#jemos#podam#api#PodamFactoryImpl.txt   
+ :    3048   :   3128
+vi mebigfatguy-fb-contrib_ba6525_3e56b6src#com#mebigfatguy#fbcontrib#detect#SuspiciousCloneAlgorithm.txt   
+ :    123   :   185
+vi FasterXML-jackson-core_60f0b5_cfe32dsrc#main#java#com#fasterxml#jackson#core#filter#FilteringParserDelegate.txt   
+ :    503   :   534
+vi FIWARE-Middleware-KIARA_f6d2aa_460980src#main#java#org#fiware#kiara#ps#rtps#builtin#data#ParticipantProxyData.txt   
+ :    75   :   88
+vi FIWARE-Middleware-KIARA_f6d2aa_460980src#main#java#org#fiware#kiara#ps#rtps#builtin#data#ParticipantProxyData.txt   
+ :    75   :   88
+vi elki-project-elki_06e2bb_a38aa4elki#src#main#java#de#lmu#ifi#dbs#elki#evaluation#scores#adapter#VectorOverThreshold.txt   
+ :    62   :   70
+vi apache-directory-fortress-core_d0922c_4fde4asrc#main#java#org#apache#directory#fortress#core#rbac#Permission.txt   
+ :    734   :   745
+vi alibaba-druid_5d365b_3b481fsrc#main#java#com#alibaba#druid#wall#WallFilter.txt   
+ :    97   :   151
+vi altran-Whydah-UserIdentityBackend_a5376e_404679src#main#java#net#whydah#identity#user#UserAggregateService.txt   
+ :    66   :   90
+vi apache-hadoop-common_60d7a8_5cff07src#main#java#org#apache#hadoop#hbase#mapreduce#TableSplit.txt   
+ :    178   :   185
+vi 0xCopy-RelaxFactory_d8e031_93fc9frxf-server#src#main#java#rxf#server#driver#CouchMetaDriver.txt   
+ :    1254   :   1261
+vi mebigfatguy-fb-contrib_cd441f_d9c646src#com#mebigfatguy#fbcontrib#detect#ReflectionOnObjectMethods.txt   
+ :    130   :   267
+vi mebigfatguy-fb-contrib_ba6525_3e56b6src#com#mebigfatguy#fbcontrib#detect#ReflectionOnObjectMethods.txt   
+ :    130   :   267
+vi tastybento-askyblock_e8d208_c07717src#com#wasteofplastic#askyblock#Locale.txt   
+ :    796   :   1046
+vi Activiti-Activiti_bb99d5_9f596dmodules#activiti-engine#src#main#java#org#activiti#engine#impl#event#SignalEventHandler.txt   
+ :    53   :   83
+vi jenkinsci-git-client-plugin_25c14e_4d4b78src#main#java#hudson#plugins#git#GitTool.txt   
+ :    52   :   59
+vi mafagafogigante-dungeon_b72953_1c00ddsrc#main#java#org#dungeon#wiki#Article.txt   
+ :    31   :   33
+vi GenomicParisCentre-eoulsan_1f4a24_9bac55src#main#java#fr#ens#transcriptome#eoulsan#steps#expression#hadoop#ExpressionHadoopStep.txt   
+ :    496   :   558
+vi graphhopper-graphhopper_c191a7_5a8373src#main#java#de#jetsli#graph#routing#util#RoutingAlgorithmIntegrationTests.txt   
+ :    127   :   165
+vi mebigfatguy-fb-contrib_cc0d6b_ccf104src#com#mebigfatguy#fbcontrib#detect#ArrayWrappedCallByReference.txt   
+ :    124   :   292
+vi mebigfatguy-fb-contrib_1f77c9_da2207src#com#mebigfatguy#fbcontrib#detect#BackportReusePublicIdentifiers.txt   
+ :    57   :   75
+vi aeshell-aesh_7e0fe3_680fc6src#main#java#org#jboss#aesh#console#Config.txt   
+ :    100   :   151
+vi sboesebeck-morphium_16f557_661613src#de#caluga#morphium#messaging#Messaging.txt   
+ :    75   :   117
+vi airlift-airlift_d97ba5_501905src#main#java#com#facebook#presto#UncompressedSliceCursor.txt   
+ :    95   :   96
+vi datanucleus-datanucleus-core_47f1a0_08655csrc#main#java#org#datanucleus#metadata#AbstractMemberMetaData.txt   
+ :    2380   :   2382
+vi LEDS-sincap-entities_3e4515_06531fsrc#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    37   :   80
+vi LEDS-sincap-entities_3e4515_06531fsrc#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    37   :   80
+vi valis-vclang_75baea_b863desrc#main#java#com#jetbrains#jetpad#vclang#parser#BuildVisitor.txt   
+ :    1200   :   1219
+vi hector-client-hector_ecd04a_e9c340src#main#java#me#prettyprint#cassandra#service#CassandraClientPoolImpl.txt   
+ :    183   :   204
+vi hector-client-hector_ecd04a_e9c340src#main#java#me#prettyprint#cassandra#service#CassandraClientPoolImpl.txt   
+ :    196   :   204
+vi perfectsense-dari_9d26db_d0badeutil#src#main#java#com#psddev#dari#util#HtmlGrid.txt   
+ :    68   :   119
+vi mebigfatguy-fb-contrib_cc0d6b_ccf104src#com#mebigfatguy#fbcontrib#detect#StutteredMethodArguments.txt   
+ :    111   :   179
+vi GenomicParisCentre-eoulsan_def15a_7905e7src#main#java#fr#ens#transcriptome#eoulsan#steps#expression#hadoop#ExpressionHadoopStep.txt   
+ :    496   :   558
+vi ansell-owlapi_37893a_b9052etools#src#main#java#org#semanticweb#owlapi#debugging#BlackBoxOWLDebugger.txt   
+ :    115   :   125
+vi ansell-owlapi_37893a_b9052etools#src#main#java#org#semanticweb#owlapi#debugging#BlackBoxOWLDebugger.txt   
+ :    116   :   125
+vi ARUP-NGS-Pipeline_04450b_71eae0src#main#java#alnGenerator#VCFReader.txt   
+ :    37   :   53
+vi ARUP-NGS-Pipeline_04450b_71eae0src#main#java#alnGenerator#VCFReader.txt   
+ :    37   :   53
+vi ARUP-NGS-Pipeline_04450b_71eae0src#main#java#alnGenerator#VCFReader.txt   
+ :    123   :   190
+vi kohsuke-github-api_eb9551_cb2248src#main#java#org#kohsuke#github#Requester.txt   
+ :    295   :   311
+vi kohsuke-github-api_eb9551_cb2248src#main#java#org#kohsuke#github#Requester.txt   
+ :    295   :   311
+vi SINTEF-9012-ThingML_711aa7_27ce14compilers#c#src#main#java#org#thingml#compilers#c#arduino#plugin#ArduinoSerial.txt   
+ :    52   :   201
+vi apache-maven-shared_23ae54_181d06src#main#java#org#apache#maven#shared#filtering#DefaultMavenResourcesFiltering.txt   
+ :    155   :   299
+vi apache-maven-shared_23ae54_181d06src#main#java#org#apache#maven#shared#filtering#DefaultMavenResourcesFiltering.txt   
+ :    155   :   299
+vi apache-maven-shared_23ae54_181d06src#main#java#org#apache#maven#shared#filtering#DefaultMavenResourcesFiltering.txt   
+ :    155   :   299
+vi hector-client-hector_00d927_38b1acsrc#main#java#me#prettyprint#cassandra#service#CassandraClientPoolImpl.txt   
+ :    154   :   175
+vi hector-client-hector_00d927_38b1acsrc#main#java#me#prettyprint#cassandra#service#CassandraClientPoolImpl.txt   
+ :    167   :   175
+vi altran-Whydah-UserIdentityBackend_5601dc_0cad0bsrc#main#java#net#whydah#identity#user#authentication#UserAuthenticationEndpoint.txt   
+ :    309   :   336
+vi roundrop-facebook4j_380da6_addc2cfacebook4j-core#src#main#java#facebook4j#FacebookImpl.txt   
+ :    2332   :   2333
+vi cismet-cismet-gui-commons_558be1_ed1715src#main#java#de#cismet#tools#gui#downloadmanager#DownloadManager.txt   
+ :    341   :   381
+vi maxymania-jxta-jxse_e946de_837e2fsrc#main#java#net#jxta#impl#endpoint#mcast#McastTransport.txt   
+ :    286   :   469
+vi plutext-docx4j_c97f7f_d7750dsrc#main#java#org#docx4j#openpackaging#parts#WordprocessingML#BinaryPartAbstractImage.txt   
+ :    100   :   108
+vi mebigfatguy-fb-contrib_1f77c9_da2207src#com#mebigfatguy#fbcontrib#detect#ArrayWrappedCallByReference.txt   
+ :    124   :   292
+vi marschraner-svm_c702f6_cc2d29src#main#java#ch#metzenthin#svm#SwingExceptionHandler.txt   
+ :    59   :   79
+vi Razz0991-Minigames_1f7dd2_e95171Minigames#src#au#com#mineauz#minigames#backend#both#SQLExport.txt   
+ :    90   :   100
+vi mebigfatguy-fb-contrib_cd441f_d9c646src#com#mebigfatguy#fbcontrib#detect#SuspiciousCloneAlgorithm.txt   
+ :    123   :   185
+vi mulesoft-mule-common_db7171_8ade70src#main#java#org#mule#common#query#expression#UnaryLogicalExpression.txt   
+ :    14   :   17
+vi LEDS-sincap-entities_50e599_3390d9src#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    35   :   74
+vi LEDS-sincap-entities_50e599_3390d9src#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    35   :   74
+vi LEDS-sincap-entities_50e599_3390d9src#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    40   :   74
+vi LEDS-sincap-entities_50e599_3390d9src#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    40   :   74
+vi LEDS-sincap-entities_50e599_3390d9src#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    45   :   74
+vi LEDS-sincap-entities_50e599_3390d9src#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    45   :   74
+vi xetorthio-jedis_fb7ebc_87e439src#main#java#redis#clients#jedis#HostAndPort.txt   
+ :    24   :   34
+vi ClemsonRSRG-RESOLVE_921c13_372a93src#main#java#edu#clemson#cs#r2jt#vcgeneration#VCGenerator.txt   
+ :    3572   :   3613
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_cc0720_2f82absrc#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    391   :   439
+vi belaban-JGroups_641d37_92ac0bsrc#org#jgroups#stack#NakReceiverWindow.txt   
+ :    241   :   267
+vi ClemsonRSRG-RESOLVE_90abbb_ed3e37src#main#java#edu#clemson#cs#r2jt#congruenceclassprover#TheoremCongruenceClosureImpl.txt   
+ :    141   :   155
+vi ClemsonRSRG-RESOLVE_90abbb_ed3e37src#main#java#edu#clemson#cs#r2jt#congruenceclassprover#TheoremCongruenceClosureImpl.txt   
+ :    117   :   155
+vi cismet-cismet-gui-commons_5a3c29_09757fsrc#main#java#de#cismet#tools#gui#downloadmanager#DownloadManager.txt   
+ :    353   :   404
+vi ClemsonRSRG-RESOLVE_02981f_5cb2d4src#main#java#edu#clemson#cs#r2jt#absynnew#ResolveCompiler.txt   
+ :    146   :   177
+vi GenomicParisCentre-eoulsan_6b7546_44b24csrc#main#java#fr#ens#transcriptome#eoulsan#core#HadoopInfo.txt   
+ :    81   :   101
+vi maartentbm-ContextPL1_8dda41_366966src#main#java#nl#tudelft#ti2806#pl1#graphWriter#GraphWriter.txt   
+ :    48   :   83
+vi maartentbm-ContextPL1_8dda41_366966src#main#java#nl#tudelft#ti2806#pl1#graphWriter#GraphWriter.txt   
+ :    48   :   83
+vi google-guava_cf718c_c8d9b9guava#src#com#google#common#collect#CustomConcurrentHashMap.txt   
+ :    2754   :   2785
+vi google-guava_cf718c_c8d9b9guava#src#com#google#common#collect#CustomConcurrentHashMap.txt   
+ :    2715   :   2746
+vi marschraner-svm_b9adbf_e89404src#main#java#ch#metzenthin#svm#ui#control#DispensationenController.txt   
+ :    110   :   111
+vi marschraner-svm_b9adbf_e89404src#main#java#ch#metzenthin#svm#ui#control#DispensationenController.txt   
+ :    91   :   92
+vi sesuncedu-htmlparser_ba965b_e1cb69src#nu#validator#htmlparser#impl#TreeBuilder.txt   
+ :    826   :   1149
+vi ClemsonRSRG-RESOLVE_e4d6ec_c8cf58src#main#java#edu#clemson#cs#r2jt#vcgeneration#VCGenerator.txt   
+ :    997   :   1100
+vi ClemsonRSRG-RESOLVE_e4d6ec_c8cf58src#main#java#edu#clemson#cs#r2jt#vcgeneration#VCGenerator.txt   
+ :    997   :   1100
+vi ClemsonRSRG-RESOLVE_e4d6ec_c8cf58src#main#java#edu#clemson#cs#r2jt#vcgeneration#VCGenerator.txt   
+ :    997   :   1100
+vi ClemsonRSRG-RESOLVE_e4d6ec_c8cf58src#main#java#edu#clemson#cs#r2jt#vcgeneration#VCGenerator.txt   
+ :    997   :   1100
+vi apache-wss4j_fff954_037c90src#main#java#org#apache#ws#security#WSDocInfo.txt   
+ :    245   :   257
+vi mebigfatguy-fb-contrib_cd441f_d9c646src#com#mebigfatguy#fbcontrib#detect#BackportReusePublicIdentifiers.txt   
+ :    57   :   75
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_11b6ae_b6019asrc#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    115   :   174
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_11b6ae_b6019asrc#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    117   :   174
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_11b6ae_b6019asrc#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    116   :   174
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_11b6ae_b6019asrc#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    114   :   174
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_11b6ae_b6019asrc#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    106   :   174
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_11b6ae_b6019asrc#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    113   :   174
+vi LEDS-sincap-entities_8c6771_ee2deasrc#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    45   :   66
+vi mebigfatguy-fb-contrib_5f064e_fe3de2src#com#mebigfatguy#fbcontrib#detect#CommonsStringBuilderToString.txt   
+ :    88   :   166
+vi mebigfatguy-fb-contrib_ba6525_3e56b6src#com#mebigfatguy#fbcontrib#detect#ModifyingUnmodifiableCollection.txt   
+ :    116   :   160
+vi ClemsonRSRG-RESOLVE_d84c34_64c586src#main#java#edu#clemson#cs#r2jt#congruenceclassprover#CongruenceClassProver.txt   
+ :    431   :   495
+vi ClemsonRSRG-RESOLVE_d84c34_64c586src#main#java#edu#clemson#cs#r2jt#congruenceclassprover#CongruenceClassProver.txt   
+ :    431   :   495
+vi ClemsonRSRG-RESOLVE_d84c34_64c586src#main#java#edu#clemson#cs#r2jt#congruenceclassprover#CongruenceClassProver.txt   
+ :    431   :   495
+vi rasto-lcmc_ebf333_4c7069src#main#java#lcmc#crm#ui#resource#IPaddrInfo.txt   
+ :    99   :   128
+vi xetorthio-jedis_670e01_6f8d46src#main#java#redis#clients#jedis#JedisCluster.txt   
+ :    1477   :   1483
+vi apache-pdfbox_e9b0bb_c47faepdfbox#src#main#java#org#apache#pdfbox#pdmodel#interactive#form#PDAppearanceString.txt   
+ :    251   :   312
+vi mebigfatguy-fb-contrib_1f77c9_da2207src#com#mebigfatguy#fbcontrib#detect#ModifyingUnmodifiableCollection.txt   
+ :    116   :   160
+vi jcabi-jcabi-github_f8d395_03770fsrc#main#java#com#jcabi#github#mock#MkOrganizations.txt   
+ :    116   :   141
+vi lightblue-platform-lightblue-core_cbe2fa_36b12dcrud#src#main#java#com#redhat#lightblue#eval#ArrayProjector.txt   
+ :    88   :   92
+vi UniTime-unitime_19f78e_2f4681JavaSource#org#unitime#timetable#server#lookup#PeopleLookupBackend.txt   
+ :    279   :   301
+vi mebigfatguy-fb-contrib_cd441f_d9c646src#com#mebigfatguy#fbcontrib#detect#ArrayWrappedCallByReference.txt   
+ :    124   :   292
+vi Bombe-Sone_66f7a0_4bcc65src#main#java#net#pterodactylus#sone#core#SoneParser.txt   
+ :    150   :   342
+vi Xephi-AuthMeReloaded_140a80_8d8ce1src#main#java#fr#xephi#authme#datasource#MySQLThread.txt   
+ :    530   :   551
+vi Xephi-AuthMeReloaded_140a80_8d8ce1src#main#java#fr#xephi#authme#datasource#MySQLThread.txt   
+ :    438   :   475
+vi omnifaces-omnifaces_dcb40e_5a0c9esrc#main#java#org#omnifaces#taghandler#ValidateBean.txt   
+ :    109   :   167
+vi alibaba-druid_bf60f9_f8b191src#main#java#com#alibaba#druid#wall#WallFilter.txt   
+ :    89   :   134
+vi ClemsonRSRG-RESOLVE_e4041a_320648src#main#java#edu#clemson#cs#r2jt#congruenceclassprover#CongruenceClassProver.txt   
+ :    329   :   338
+vi ClemsonRSRG-RESOLVE_e4041a_320648src#main#java#edu#clemson#cs#r2jt#congruenceclassprover#CongruenceClassProver.txt   
+ :    329   :   338
+vi ClemsonRSRG-RESOLVE_e4041a_320648src#main#java#edu#clemson#cs#r2jt#congruenceclassprover#CongruenceClassProver.txt   
+ :    329   :   338
+vi OpenTreeOfLife-treemachine_297c5c_91821csrc#main#java#opentree#PhylografterConnector.txt   
+ :    204   :   280
+vi OpenTreeOfLife-treemachine_297c5c_91821csrc#main#java#opentree#PhylografterConnector.txt   
+ :    204   :   280
+vi OpenTreeOfLife-treemachine_297c5c_91821csrc#main#java#opentree#PhylografterConnector.txt   
+ :    204   :   280
+vi biojava-biojava_78e3e0_20e475biojava-structure#src#main#java#org#biojava#nbio#structure#symmetry#internal#CeSymm.txt   
+ :    192   :   355
+vi biojava-biojava_78e3e0_20e475biojava-structure#src#main#java#org#biojava#nbio#structure#symmetry#internal#CeSymm.txt   
+ :    192   :   355
+vi biojava-biojava_78e3e0_20e475biojava-structure#src#main#java#org#biojava#nbio#structure#symmetry#internal#CeSymm.txt   
+ :    192   :   355
+vi mebigfatguy-fb-contrib_cc0d6b_ccf104src#com#mebigfatguy#fbcontrib#detect#NeedlessMemberCollectionSynchronization.txt   
+ :    271   :   342
+vi RolecraftDev-RolecraftCore_c66d9c_83938esrc#main#java#com#github#rolecraftdev#data#storage#SQLiteDataStore.txt   
+ :    64   :   77
+vi RolecraftDev-RolecraftCore_c66d9c_83938esrc#main#java#com#github#rolecraftdev#data#storage#SQLiteDataStore.txt   
+ :    64   :   77
+vi perfectsense-dari_743d6d_cdfb1dutil#src#main#java#com#psddev#dari#util#HtmlGrid.txt   
+ :    68   :   119
+vi GenomicParisCentre-eoulsan_d5f5bd_66bdfbsrc#main#java#fr#ens#transcriptome#eoulsan#steps#expression#hadoop#ExpressionHadoopStep.txt   
+ :    496   :   558
+vi shilad-wikibrain_b21424_563a2ewikibrain-spatial#src#main#java#org#wikibrain#spatial#loader#GADMConverter.txt   
+ :    70   :   97
+vi graphhopper-graphhopper_fe0912_f6aaabsrc#main#java#com#graphhopper#routing#util#RoutingAlgorithmIntegrationTests.txt   
+ :    99   :   107
+vi GenomicParisCentre-eoulsan_414e96_16c7c6src#main#java#fr#ens#transcriptome#eoulsan#bio#readsmappers#BowtieReadsMapper.txt   
+ :    197   :   235
+vi GenomicParisCentre-eoulsan_414e96_16c7c6src#main#java#fr#ens#transcriptome#eoulsan#bio#readsmappers#BowtieReadsMapper.txt   
+ :    197   :   235
+vi aherbert-GDSC-SMLM_07c8f9_c27c0dsrc#main#java#gdsc#smlm#ij#plugins#BenchmarkSpotFilter.txt   
+ :    415   :   500
+vi kuujo-vertigo_37e11f_088630src#main#java#net#kuujo#vertigo#coordinator#AbstractCoordinator.txt   
+ :    182   :   202
+vi Activiti-Activiti_edec53_33ff3fmodules#activiti-engine#src#main#java#org#activiti#engine#impl#persistence#entity#ExecutionEntity.txt   
+ :    821   :   825
+vi perfectsense-dari_70dbb9_ee4b75util#src#main#java#com#psddev#dari#util#HtmlGrid.txt   
+ :    68   :   119
+vi kohsuke-github-api_e239ef_4660c6src#main#java#org#kohsuke#github#Requester.txt   
+ :    295   :   311
+vi kohsuke-github-api_e239ef_4660c6src#main#java#org#kohsuke#github#Requester.txt   
+ :    295   :   311
+vi minusone13-InvoicingSystem_741b5f_dcb548src#main#java#data#commoditydata#StubCommodityList.txt   
+ :    42   :   49
+vi perfectsense-dari_7a9e20_d5deebutil#src#main#java#com#psddev#dari#util#HtmlGrid.txt   
+ :    67   :   118
+vi forcedotcom-phoenix_290d62_ed5d41src#main#java#com#salesforce#phoenix#util#CSVLoader.txt   
+ :    99   :   148
+vi forcedotcom-phoenix_290d62_ed5d41src#main#java#com#salesforce#phoenix#util#CSVLoader.txt   
+ :    99   :   148
+vi mebigfatguy-fb-contrib_49624f_ba55f3src#com#mebigfatguy#fbcontrib#detect#CommonsStringBuilderToString.txt   
+ :    88   :   166
+vi perfectsense-dari_3feda7_e2fe7butil#src#main#java#com#psddev#dari#util#HtmlGrid.txt   
+ :    68   :   119
+vi DerPavlov-Cannons_ff59c9_eefb4esrc#main#java#at#pavlov#cannons#Aiming.txt   
+ :    506   :   520
+vi ClemsonRSRG-RESOLVE_4a059c_c77ef7src#main#java#edu#clemson#cs#r2jt#congruenceclassprover#CongruenceClassProver.txt   
+ :    329   :   338
+vi ClemsonRSRG-RESOLVE_4a059c_c77ef7src#main#java#edu#clemson#cs#r2jt#congruenceclassprover#CongruenceClassProver.txt   
+ :    329   :   338
+vi ClemsonRSRG-RESOLVE_4a059c_c77ef7src#main#java#edu#clemson#cs#r2jt#congruenceclassprover#CongruenceClassProver.txt   
+ :    329   :   338
+vi ClemsonRSRG-RESOLVE_115f93_769dc8src#main#java#edu#clemson#cs#r2jt#congruenceclassprover#SMTProver.txt   
+ :    373   :   384
+vi ClemsonRSRG-RESOLVE_115f93_769dc8src#main#java#edu#clemson#cs#r2jt#congruenceclassprover#SMTProver.txt   
+ :    373   :   384
+vi ClemsonRSRG-RESOLVE_115f93_769dc8src#main#java#edu#clemson#cs#r2jt#congruenceclassprover#SMTProver.txt   
+ :    373   :   384
+vi marschraner-svm_84c97e_148b80src#main#java#ch#metzenthin#svm#domain#commands#CreateWordTableCommand.txt   
+ :    149   :   151
+vi julianhyde-optiq_f9d398_89db7fsrc#main#java#net#hydromatic#optiq#prepare#OptiqPrepareImpl.txt   
+ :    184   :   225
+vi PEXPlugins-PermissionsEx_4f752f_0ccbbfsrc#main#java#ru#tehkode#permissions#backends#file#FileBackend.txt   
+ :    195   :   201
+vi greese-dasein-cloud-azure_ab16f5_db2633src#main#java#org#dasein#cloud#azure#network#AzureVlanSupport.txt   
+ :    187   :   256
+vi greese-dasein-cloud-azure_ab16f5_db2633src#main#java#org#dasein#cloud#azure#network#AzureVlanSupport.txt   
+ :    1001   :   1025
+vi GenomicParisCentre-eoulsan_237a78_4a4f27src#main#java#fr#ens#transcriptome#eoulsan#Globals.txt   
+ :    242   :   252
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_b0274b_94fc93src#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    349   :   439
+vi mebigfatguy-fb-contrib_7ae3eb_173c3dsrc#com#mebigfatguy#fbcontrib#detect#ConflictingTimeUnits.txt   
+ :    130   :   199
+vi stapler-stapler_6db6e7_3ea4c8src#org#kohsuke#stapler#framework#io#LargeText.txt   
+ :    87   :   104
+vi thinkofdeath-ThinkMap_a9ba1b_ea8eecclient#src#main#java#uk#co#thinkofdeath#mapviewer#client#MapViewer.txt   
+ :    84   :   91
+vi OpenTreeOfLife-taxomachine_044e39_244f89src#main#java#opentree#Taxon.txt   
+ :    235   :   369
+vi minusone13-InvoicingSystem_3838b2_f33e79src#main#java#presentation#managerui#JPBill.txt   
+ :    999   :   1010
+vi minusone13-InvoicingSystem_3838b2_f33e79src#main#java#presentation#managerui#JPBill.txt   
+ :    1001   :   1010
+vi minusone13-InvoicingSystem_3838b2_f33e79src#main#java#presentation#managerui#JPBill.txt   
+ :    1000   :   1010
+vi dankurka-mgwt_9bb682_bdc678src#main#java#com#googlecode#mgwt#ui#client#widget#buttonbar#ButtonBarButtonBase.txt   
+ :    105   :   134
+vi shilad-wikibrain_6c54d5_a5c400wikibrain-spatial#src#main#java#org#wikibrain#spatial#cookbook#tflevaluate#InstanceOfExtractor.txt   
+ :    109   :   136
+vi shilad-wikibrain_6c54d5_a5c400wikibrain-spatial#src#main#java#org#wikibrain#spatial#cookbook#tflevaluate#InstanceOfExtractor.txt   
+ :    109   :   136
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_6c9235_dc65a9src#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    118   :   179
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_6c9235_dc65a9src#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    121   :   179
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_6c9235_dc65a9src#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    120   :   179
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_6c9235_dc65a9src#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    119   :   179
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_6c9235_dc65a9src#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    122   :   179
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_6c9235_dc65a9src#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    124   :   179
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_6c9235_dc65a9src#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    123   :   179
+vi xetorthio-jedis_67a1d3_4c6d83src#main#java#redis#clients#jedis#HostAndPort.txt   
+ :    24   :   34
+vi wnameless-rubycollect4j_3ab283_a4dcfdsrc#main#java#cleanzephyr#rubycollect4j#RubyIO.txt   
+ :    82   :   109
+vi ClemsonRSRG-RESOLVE_35d9f9_56ce4bsrc#main#java#edu#clemson#cs#r2jt#translation#PrettyCTranslation.txt   
+ :    51   :   56
+vi apache-wss4j_4f9421_74a923src#org#apache#ws#security#message#WSSecSignature.txt   
+ :    393   :   474
+vi ClemsonRSRG-RESOLVE_1fbc27_ff7390src#main#java#edu#clemson#cs#r2jt#vcgeneration#VCGenerator.txt   
+ :    86   :   101
+vi lexicalscope-svm_61ebce_50d351src#main#java#com#lexicalscope#symb#vm#Stack.txt   
+ :    40   :   42
+vi mebigfatguy-fb-contrib_d28181_e732aesrc#com#mebigfatguy#fbcontrib#detect#LiteralStringComparison.txt   
+ :    115   :   202
+vi WorldCretornica-PlotMe-Core_8a4f6f_06d315src#bukkit#java#com#worldcretornica#plotme_core#bukkit#BukkitCommand.txt   
+ :    24   :   42
+vi sanity-quickml_ca649e_35941csrc#main#java#quickml#supervised#tree#TreeBuilderHelper.txt   
+ :    38   :   39
+vi ClemsonRSRG-RESOLVE_80b1dc_1bbf27src#main#java#edu#clemson#cs#r2jt#verification#PrintAssertions.txt   
+ :    934   :   979
+vi instance01-MinigamesAPI_c4a98c_316d4cAPI#src#main#java#com#comze_instancelabs#minigamesapi#Shop.txt   
+ :    42   :   72
+vi kohsuke-github-api_90d104_698d64src#main#java#org#kohsuke#github#Requester.txt   
+ :    295   :   311
+vi kohsuke-github-api_90d104_698d64src#main#java#org#kohsuke#github#Requester.txt   
+ :    295   :   311
+vi tengstrand-Laja_e80754_f3590csrc#main#java#net#sf#laja#parser#cdd#MessageFormatter.txt   
+ :    34   :   44
+vi mebigfatguy-fb-contrib_10ca28_145130src#com#mebigfatguy#fbcontrib#detect#PoorMansEnum.txt   
+ :    100   :   120
+vi mebigfatguy-fb-contrib_10ca28_145130src#com#mebigfatguy#fbcontrib#detect#PoorMansEnum.txt   
+ :    99   :   120
+vi LEDS-sincap-entities_0adbdc_8929d5src#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    41   :   80
+vi LEDS-sincap-entities_0adbdc_8929d5src#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    42   :   80
+vi LEDS-sincap-entities_0adbdc_8929d5src#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    44   :   80
+vi Activiti-Activiti_f6c242_fc85e3modules#activiti-bpmn-converter#src#main#java#org#activiti#bpmn#converter#UserTaskXMLConverter.txt   
+ :    274   :   279
+vi libetl-soundtransform_cb8748_3f4bb5src#main#java#org#toilelibre#libe#soundtransform#infrastructure#service#transforms#SpeedUpSoundTransformation.txt   
+ :    42   :   56
+vi msokolov-lux_63efc7_d7d3adsrc#main#java#lux#xpath#NodeTest.txt   
+ :    59   :   76
+vi bcdev-coastcolour_dbee39_1efb0ecoastcolour-processing#src#main#java#org#esa#beam#coastcolour#processing#L2WOp.txt   
+ :    466   :   558
+vi bcdev-coastcolour_dbee39_1efb0ecoastcolour-processing#src#main#java#org#esa#beam#coastcolour#processing#L2WOp.txt   
+ :    467   :   558
+vi bcdev-coastcolour_dbee39_1efb0ecoastcolour-processing#src#main#java#org#esa#beam#coastcolour#processing#L2WOp.txt   
+ :    468   :   558
+vi elBukkit-MagicLib_b9c07a_9e2b43src#main#java#com#elmakers#mine#bukkit#block#MaterialAndData.txt   
+ :    161   :   205
+vi elBukkit-MagicLib_b9c07a_9e2b43src#main#java#com#elmakers#mine#bukkit#block#MaterialAndData.txt   
+ :    161   :   205
+vi elBukkit-MagicLib_b9c07a_9e2b43src#main#java#com#elmakers#mine#bukkit#block#MaterialAndData.txt   
+ :    161   :   205
+vi elBukkit-MagicLib_b9c07a_9e2b43src#main#java#com#elmakers#mine#bukkit#block#MaterialAndData.txt   
+ :    137   :   205
+vi elBukkit-MagicLib_b9c07a_9e2b43src#main#java#com#elmakers#mine#bukkit#block#MaterialAndData.txt   
+ :    137   :   205
+vi elBukkit-MagicLib_b9c07a_9e2b43src#main#java#com#elmakers#mine#bukkit#block#MaterialAndData.txt   
+ :    137   :   205
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_f7e8ba_60ec0asrc#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    254   :   385
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_f7e8ba_60ec0asrc#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    254   :   385
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_f7e8ba_60ec0asrc#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    254   :   385
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_f7e8ba_60ec0asrc#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    253   :   385
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_f7e8ba_60ec0asrc#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    253   :   385
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_f7e8ba_60ec0asrc#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    253   :   385
+vi simon-eastwood-DependencyCheckCM_78ff88_f64192src#main#java#org#codesecure#dependencycheck#utils#Downloader.txt   
+ :    127   :   160
+vi aherbert-GDSC-SMLM_9f7caa_022d2fsrc#main#java#gdsc#smlm#ij#plugins#DriftCalculator.txt   
+ :    168   :   189
+vi buddycloud-buddycloud-server-java_60f095_a25169src#main#java#org#buddycloud#channelserver#packetprocessor#iq#namespace#pubsub#set#SubscriptionEvent.txt   
+ :    179   :   185
+vi buddycloud-buddycloud-server-java_60f095_a25169src#main#java#org#buddycloud#channelserver#packetprocessor#iq#namespace#pubsub#set#SubscriptionEvent.txt   
+ :    178   :   185
+vi buddycloud-buddycloud-server-java_60f095_a25169src#main#java#org#buddycloud#channelserver#packetprocessor#iq#namespace#pubsub#set#SubscriptionEvent.txt   
+ :    177   :   185
+vi tehbeard-BeardStat_cf6296_c9e6adsrc#main#java#com#tehbeard#BeardStat#listeners#MetaDataCapture.txt   
+ :    47   :   55
+vi tehbeard-BeardStat_cf6296_c9e6adsrc#main#java#com#tehbeard#BeardStat#listeners#MetaDataCapture.txt   
+ :    46   :   55
+vi arjovanramshorst-bubble-bobble-sem_e7546b_daaeafcore#src#main#java#sem#group15#bubblebobble#core#BubbleBobble.txt   
+ :    67   :   74
+vi arjovanramshorst-bubble-bobble-sem_e7546b_daaeafcore#src#main#java#sem#group15#bubblebobble#core#BubbleBobble.txt   
+ :    69   :   74
+vi arjovanramshorst-bubble-bobble-sem_e7546b_daaeafcore#src#main#java#sem#group15#bubblebobble#core#BubbleBobble.txt   
+ :    66   :   74
+vi GenomicParisCentre-eoulsan_dde9b7_3cf6cfsrc#main#java#fr#ens#transcriptome#eoulsan#bio#readsmappers#AbstractSequenceReadsMapper.txt   
+ :    771   :   802
+vi GenomicParisCentre-eoulsan_de3287_da8a01src#main#java#fr#ens#transcriptome#eoulsan#steps#MergerStep.txt   
+ :    199   :   201
+vi GenomicParisCentre-eoulsan_de3287_da8a01src#main#java#fr#ens#transcriptome#eoulsan#steps#MergerStep.txt   
+ :    109   :   154
+vi mebigfatguy-fb-contrib_cd441f_d9c646src#com#mebigfatguy#fbcontrib#detect#StutteredMethodArguments.txt   
+ :    111   :   179
+vi msokolov-lux_96e484_0ae1b9src#main#java#lux#solr#SolrIndexConfig.txt   
+ :    153   :   164
+vi basho-riak-java-client_302582_076305src#main#java#com#basho#riak#client#raw#pbc#PBClientConfig.txt   
+ :    196   :   205
+vi gertvv-addis_71c8eb_975683src#main#java#org#drugis#addis#presentation#NetworkMetaAnalysisPresentation.txt   
+ :    57   :   60
+vi GenomicParisCentre-eoulsan_46cfa3_b0c06dsrc#main#java#fr#ens#transcriptome#eoulsan#steps#expression#hadoop#ExpressionHadoopStep.txt   
+ :    496   :   558
+vi msokolov-lux_1a7ed5_69f085src#main#java#lux#CachingDocReader.txt   
+ :    110   :   120
+vi digipost-digipost-api-client-java_3023db_43a152src#main#java#no#digipost#api#client#representations#NameAndAddress.txt   
+ :    77   :   80
+vi GenomicParisCentre-aozan_c3bf6c_76ff05src#main#java#fr#ens#biologie#genomique#aozan#fastqc#OverrepresentedSequencesBlast.txt   
+ :    365   :   383
+vi apache-maven-shared_0c2f7e_3851c3src#main#java#org#apache#maven#shared#filtering#DefaultMavenResourcesFiltering.txt   
+ :    161   :   295
+vi Activiti-Activiti_d626cc_0014d1modules#activiti-engine#src#main#java#org#activiti#engine#impl#persistence#entity#ExecutionEntity.txt   
+ :    821   :   825
+vi WorldCretornica-PlotMe-Core_3f3ca9_95f5afsrc#main#java#com#worldcretornica#plotme_core#commands#CmdPlotList.txt   
+ :    48   :   124
+vi WorldCretornica-PlotMe-Core_3f3ca9_95f5afsrc#main#java#com#worldcretornica#plotme_core#commands#CmdPlotList.txt   
+ :    48   :   124
+vi WorldCretornica-PlotMe-Core_3f3ca9_95f5afsrc#main#java#com#worldcretornica#plotme_core#commands#CmdPlotList.txt   
+ :    48   :   124
+vi WorldCretornica-PlotMe-Core_3f3ca9_95f5afsrc#main#java#com#worldcretornica#plotme_core#commands#CmdPlotList.txt   
+ :    48   :   124
+vi apache-directory-fortress-core_078018_ec0e81src#main#java#org#apache#directory#fortress#core#rbac#Permission.txt   
+ :    734   :   745
+vi konsoletyper-teavm_344591_4e4d0cteavm-core#src#main#java#org#teavm#javascript#MethodDecompiler.txt   
+ :    158   :   202
+vi konsoletyper-teavm_344591_4e4d0cteavm-core#src#main#java#org#teavm#javascript#MethodDecompiler.txt   
+ :    165   :   202
+vi FIWARE-Middleware-KIARA_ebd148_76d504src#main#java#org#fiware#kiara#ps#rtps#builtin#data#ParticipantProxyData.txt   
+ :    92   :   104
+vi FIWARE-Middleware-KIARA_ebd148_76d504src#main#java#org#fiware#kiara#ps#rtps#builtin#data#ParticipantProxyData.txt   
+ :    97   :   104
+vi FIWARE-Middleware-KIARA_ebd148_76d504src#main#java#org#fiware#kiara#ps#rtps#builtin#data#ParticipantProxyData.txt   
+ :    89   :   104
+vi FIWARE-Middleware-KIARA_ebd148_76d504src#main#java#org#fiware#kiara#ps#rtps#builtin#data#ParticipantProxyData.txt   
+ :    93   :   104
+vi marschraner-svm_3e75c2_337bcdsrc#main#java#ch#metzenthin#svm#ui#control#MaercheneinteilungenController.txt   
+ :    142   :   177
+vi Xephi-AuthMeReloaded_6dc406_bb22dasrc#main#java#fr#xephi#authme#permission#PermissionsManager.txt   
+ :    516   :   531
+vi Xephi-AuthMeReloaded_6dc406_bb22dasrc#main#java#fr#xephi#authme#permission#PermissionsManager.txt   
+ :    463   :   477
+vi Xephi-AuthMeReloaded_6dc406_bb22dasrc#main#java#fr#xephi#authme#permission#PermissionsManager.txt   
+ :    456   :   477
+vi julianhyde-optiq_026ff5_aeb9bfsrc#main#java#net#hydromatic#optiq#impl#clone#ArrayTable.txt   
+ :    471   :   475
+vi Activiti-Activiti_93c36a_459b79modules#activiti-engine#src#main#java#org#activiti#engine#impl#event#AbstractEventHandler.txt   
+ :    98   :   109
+vi mkovatsc-Californium_fde074_96384bcf-client#src#main#java#ch#ethz#inf#vs#californium#examples#ExampleClient.txt   
+ :    119   :   236
+vi mkovatsc-Californium_fde074_96384bcf-client#src#main#java#ch#ethz#inf#vs#californium#examples#ExampleClient.txt   
+ :    91   :   236
+vi mkovatsc-Californium_f09efe_40eac2cf-benchmark#src#main#java#ch#ethz#inf#vs#californium#benchmark#WorkQueueExecutor.txt   
+ :    47   :   54
+vi jankotek-MapDB_663c39_1c750esrc#main#java#org#mapdb#StoreDirect.txt   
+ :    828   :   901
+vi junkdog-artemis-odb_fbba4c_f86220artemis#src#main#java#com#artemis#EntitySystem.txt   
+ :    40   :   47
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_376a95_d054d2src#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    260   :   455
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_376a95_d054d2src#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    260   :   455
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_376a95_d054d2src#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    260   :   455
+vi renepickhardt-generalized-language-modeling-toolkit_2af63e_6ff0dcsrc#main#java#de#glmtk#executables#GlmtkNew.txt   
+ :    103   :   167
+vi renepickhardt-generalized-language-modeling-toolkit_2af63e_6ff0dcsrc#main#java#de#glmtk#executables#GlmtkNew.txt   
+ :    103   :   167
+vi renepickhardt-generalized-language-modeling-toolkit_2af63e_6ff0dcsrc#main#java#de#glmtk#executables#GlmtkNew.txt   
+ :    103   :   167
+vi renepickhardt-generalized-language-modeling-toolkit_2af63e_6ff0dcsrc#main#java#de#glmtk#executables#GlmtkNew.txt   
+ :    103   :   167
+vi valis-vclang_e9c273_01d032src#main#java#com#jetbrains#jetpad#vclang#ConsoleMain.txt   
+ :    118   :   163
+vi Activiti-Activiti_fc9627_2bfa9dmodules#activiti-engine#src#main#java#org#activiti#engine#impl#event#AbstractEventHandler.txt   
+ :    98   :   109
+vi graphhopper-graphhopper_44d61f_a08f10src#main#java#com#graphhopper#GraphHopper.txt   
+ :    126   :   136
+vi renepickhardt-generalized-language-modeling-toolkit_501d3c_b72164src#main#java#de#glmtk#options#EstimatorsOption.txt   
+ :    30   :   31
+vi mebigfatguy-fb-contrib_cd441f_d9c646src#com#mebigfatguy#fbcontrib#detect#ConstantListIndex.txt   
+ :    138   :   202
+vi minusone13-InvoicingSystem_045187_743313src#main#java#businesslogic#examinebl#StubBillPool.txt   
+ :    41   :   48
+vi minusone13-InvoicingSystem_045187_743313src#main#java#businesslogic#examinebl#StubBillPool.txt   
+ :    42   :   48
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_bb8e7a_829683src#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    406   :   441
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_bb8e7a_829683src#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    406   :   441
+vi apache-commons-configuration_42f43a_5dce7bsrc#main#java#org#apache#commons#configuration#io#FileLocatorUtils.txt   
+ :    458   :   471
+vi SophieKoonin-JavaDecaf_cf3fa7_18d909src#main#java#parser#JDCParser.txt   
+ :    5885   :   5892
+vi SophieKoonin-JavaDecaf_cf3fa7_18d909src#main#java#parser#JDCParser.txt   
+ :    5886   :   5892
+vi SophieKoonin-JavaDecaf_cf3fa7_18d909src#main#java#parser#JDCParser.txt   
+ :    5887   :   5892
+vi SophieKoonin-JavaDecaf_cf3fa7_18d909src#main#java#parser#JDCParser.txt   
+ :    5889   :   5892
+vi GenomicParisCentre-eoulsan_588287_4283bdsrc#main#java#fr#ens#transcriptome#eoulsan#steps#galaxytool#GalaxyToolStep.txt   
+ :    110   :   126
+vi paul-hammant-qdox_b9faef_8e4ce2src#main#java#com#thoughtworks#qdox#model#expression#FieldRef.txt   
+ :    125   :   158
+vi jankotek-MapDB_7f8421_c85ebesrc#main#java#org#mapdb#StoreDirect.txt   
+ :    80   :   95
+vi xetorthio-jedis_7845dc_b2fcbesrc#main#java#redis#clients#jedis#Connection.txt   
+ :    55   :   61
+vi perfectsense-dari_0650ca_bae484util#src#main#java#com#psddev#dari#util#HtmlGrid.txt   
+ :    68   :   119
+vi cismet-cismet-gui-commons_62c8c1_e4a273src#main#java#de#cismet#tools#gui#downloadmanager#DownloadManager.txt   
+ :    353   :   404
+vi paul-hammant-qdox_8b22fa_d81e14src#java#com#thoughtworks#qdox#parser#structs#AnnoDef.txt   
+ :    45   :   57
+vi LEDS-sincap-entities_6190c0_bed22csrc#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    40   :   66
+vi LEDS-sincap-entities_6190c0_bed22csrc#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    40   :   66
+vi LEDS-sincap-entities_6190c0_bed22csrc#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    34   :   66
+vi LEDS-sincap-entities_6190c0_bed22csrc#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    34   :   66
+vi LEDS-sincap-entities_6190c0_bed22csrc#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    28   :   66
+vi LEDS-sincap-entities_6190c0_bed22csrc#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    28   :   66
+vi LEDS-sincap-entities_6190c0_bed22csrc#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    33   :   66
+vi LEDS-sincap-entities_6190c0_bed22csrc#main#java#br#ifes#leds#sincap#gerenciaNotificacao#cln#util#dataFactory#DataFactoryMain.txt   
+ :    33   :   66
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_30b2a4_c3a0e2src#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    232   :   304
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_30b2a4_c3a0e2src#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    232   :   304
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_30b2a4_c3a0e2src#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    232   :   304
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_30b2a4_c3a0e2src#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    232   :   304
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_30b2a4_c3a0e2src#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    232   :   304
+vi owlcs-owlapi_37893a_b9052etools#src#main#java#org#semanticweb#owlapi#debugging#BlackBoxOWLDebugger.txt   
+ :    116   :   125
+vi owlcs-owlapi_37893a_b9052etools#src#main#java#org#semanticweb#owlapi#debugging#BlackBoxOWLDebugger.txt   
+ :    115   :   125
+vi apache-directory-shared_428670_58d90dldap#src#main#java#org#apache#directory#shared#ldap#schema#syntaxCheckers#AttributeTypeUsageSyntaxChecker.txt   
+ :    114   :   128
+vi tengstrand-Laja_e245ce_ac50f6src#main#java#net#sf#laja#parser#cdd#state#StateParser.txt   
+ :    466   :   776
+vi ClemsonRSRG-RESOLVE_c1dd60_6782d0src#main#java#edu#clemson#cs#r2jt#vcgeneration#VCGenerator.txt   
+ :    4280   :   4370
+vi ClemsonRSRG-RESOLVE_c1dd60_6782d0src#main#java#edu#clemson#cs#r2jt#vcgeneration#VCGenerator.txt   
+ :    4280   :   4370
+vi cismet-cids-server_3dde9b_605c6bsrc#main#java#de#cismet#cids#server#search#builtin#CidsLayerSearchStatement.txt   
+ :    47   :   48
+vi antoine-tran-Hedera_9dce20_cafd7cjava#main#org#hedera#io#input#WikiRevisionPageInputFormat.txt   
+ :    169   :   426
+vi Activiti-Activiti_16e877_a6698bmodules#activiti-engine#src#main#java#org#activiti#engine#impl#persistence#entity#ExecutionEntity.txt   
+ :    821   :   825
+vi phillipsic-SeleniumDriverFramework_1aff2f_9aec08src#main#java#com#comverse#css#common#Common.txt   
+ :    418   :   424
+vi ClemsonRSRG-RESOLVE_84220c_70e2basrc#main#java#edu#clemson#cs#r2jt#congruenceclassprover#CongruenceClassProver.txt   
+ :    313   :   345
+vi notthebees-languagegames_136a88_a2359fsrc#main#java#simulation#conceptualspaces#Observation.txt   
+ :    14   :   16
+vi apache-pdfbox_156907_be90depdfbox#src#main#java#org#apache#pdfbox#pdmodel#font#FileSystemFontProvider.txt   
+ :    375   :   433
+vi jeremylong-DependencyCheck_566f36_283dcasrc#main#java#org#codesecure#dependencycheck#data#cpe#Index.txt   
+ :    271   :   287
+vi jeremylong-DependencyCheck_566f36_283dcasrc#main#java#org#codesecure#dependencycheck#data#cpe#Index.txt   
+ :    271   :   287
+vi minusone13-InvoicingSystem_360e0e_32caeasrc#main#java#data#billdata#CommodityBillSaver.txt   
+ :    83   :   93
+vi tengstrand-Laja_72c76d_b2cffasrc#main#java#net#sf#laja#parser#cdd#creator#CreatorParser.txt   
+ :    299   :   464
+vi twizmwazin-CardinalPGM_243df7_8c361bsrc#main#java#in#twizmwaz#cardinal#command#ChatCommands.txt   
+ :    26   :   45
+vi shilad-wikibrain_5d1f9f_df7c9cwikibrain-spatial#src#main#java#org#wikibrain#spatial#loader#GADMConverter.txt   
+ :    69   :   97
+vi shilad-wikibrain_5d1f9f_df7c9cwikibrain-spatial#src#main#java#org#wikibrain#spatial#loader#GADMConverter.txt   
+ :    69   :   97
+vi xetorthio-jedis_3ebc25_f7995asrc#main#java#redis#clients#jedis#HostAndPort.txt   
+ :    24   :   34
+vi openmicroscopy-bioformats_bc8114_3f0b2bcomponents#forks#mdbtools#src#mdbtools#libmdb#Data.txt   
+ :    684   :   812
+vi valis-vclang_b863de_0b981esrc#main#java#com#jetbrains#jetpad#vclang#term#definition#visitor#TypeChecking.txt   
+ :    110   :   185
+vi cojen-Tupl_bc5f7b_2b5084src#main#java#org#cojen#tupl#RedoWriter.txt   
+ :    345   :   352
+vi rapla-rapla_d0072f_e3aa9fsrc#main#java#org#rapla#framework#ServiceListCreator.txt   
+ :    123   :   186
+vi digipost-digipost-api-client-java_95dfe4_d8abbdsrc#main#java#no#digipost#api#client#filters#LoggingFilter.txt   
+ :    229   :   235
+vi xetorthio-jedis_9c2960_7845dcsrc#main#java#redis#clients#jedis#HostAndPort.txt   
+ :    24   :   34
+vi svn2github-forge_0029f2_cb1f0asrc#main#java#forge#gui#toolbox#itemmanager#table#ManaCostRenderer.txt   
+ :    101   :   133
+vi svn2github-forge_0029f2_cb1f0asrc#main#java#forge#gui#toolbox#itemmanager#table#ManaCostRenderer.txt   
+ :    101   :   133
+vi svn2github-forge_0029f2_cb1f0asrc#main#java#forge#gui#toolbox#itemmanager#table#ManaCostRenderer.txt   
+ :    101   :   133
+vi perfectsense-dari_d2c826_cd65e6util#src#main#java#com#psddev#dari#util#HtmlGrid.txt   
+ :    68   :   119
+vi OpenTreeOfLife-treemachine_2d287d_64d915src#main#java#opentree#plugins#GoLS.txt   
+ :    92   :   106
+vi perfectsense-dari_eda3de_3bbe51util#src#main#java#com#psddev#dari#util#HtmlGrid.txt   
+ :    68   :   119
+vi GenomicParisCentre-eoulsan_b0fcdf_ad8431src#main#java#fr#ens#transcriptome#eoulsan#bio#expressioncounters#HTSeqUtils.txt   
+ :    313   :   340
+vi GenomicParisCentre-eoulsan_927389_7c517bsrc#main#java#fr#ens#transcriptome#eoulsan#steps#MergerStep.txt   
+ :    109   :   154
+vi GenomicParisCentre-eoulsan_927389_7c517bsrc#main#java#fr#ens#transcriptome#eoulsan#steps#MergerStep.txt   
+ :    199   :   201
+vi valis-vclang_2f00c1_586bc4src#main#java#com#jetbrains#jetpad#vclang#parser#BuildVisitor.txt   
+ :    231   :   276
+vi valis-vclang_2f00c1_586bc4src#main#java#com#jetbrains#jetpad#vclang#parser#BuildVisitor.txt   
+ :    231   :   276
+vi valis-vclang_2f00c1_586bc4src#main#java#com#jetbrains#jetpad#vclang#parser#BuildVisitor.txt   
+ :    231   :   276
+vi valis-vclang_2f00c1_586bc4src#main#java#com#jetbrains#jetpad#vclang#parser#BuildVisitor.txt   
+ :    154   :   180
+vi valis-vclang_2f00c1_586bc4src#main#java#com#jetbrains#jetpad#vclang#parser#BuildVisitor.txt   
+ :    154   :   180
+vi johan-martenson-settlers_ab5310_37e527src#main#java#org#appland#settlers#model#GameLogic.txt   
+ :    52   :   69
+vi johan-martenson-settlers_ab5310_37e527src#main#java#org#appland#settlers#model#GameLogic.txt   
+ :    59   :   69
+vi msokolov-lux_5a7f6f_70e28dsrc#main#java#lux#saxon#SaxonTranslator.txt   
+ :    786   :   851
+vi msokolov-lux_5a7f6f_70e28dsrc#main#java#lux#saxon#SaxonTranslator.txt   
+ :    798   :   851
+vi msokolov-lux_5a7f6f_70e28dsrc#main#java#lux#saxon#SaxonTranslator.txt   
+ :    794   :   851
+vi msokolov-lux_5a7f6f_70e28dsrc#main#java#lux#saxon#SaxonTranslator.txt   
+ :    802   :   851
+vi msokolov-lux_5a7f6f_70e28dsrc#main#java#lux#saxon#SaxonTranslator.txt   
+ :    788   :   851
+vi msokolov-lux_5a7f6f_70e28dsrc#main#java#lux#saxon#SaxonTranslator.txt   
+ :    806   :   851
+vi mebigfatguy-fb-contrib_cc0d6b_ccf104src#com#mebigfatguy#fbcontrib#detect#BackportReusePublicIdentifiers.txt   
+ :    57   :   75
+vi ClemsonRSRG-RESOLVE_84220c_70e2basrc#main#java#edu#clemson#cs#r2jt#congruenceclassprover#ConjunctionOfNormalizedAtomicExpressions.txt   
+ :    445   :   448
+vi biojava-biojava_20e475_285587biojava-structure#src#main#java#org#biojava#nbio#structure#symmetry#internal#CeSymmResult.txt   
+ :    49   :   71
+vi biojava-biojava_20e475_285587biojava-structure#src#main#java#org#biojava#nbio#structure#symmetry#internal#CeSymmResult.txt   
+ :    49   :   71
+vi xetorthio-jedis_783653_653d6csrc#main#java#redis#clients#jedis#HostAndPort.txt   
+ :    24   :   34
+vi mebigfatguy-fb-contrib_ba6525_3e56b6src#com#mebigfatguy#fbcontrib#detect#BackportReusePublicIdentifiers.txt   
+ :    57   :   75
+vi mebigfatguy-fb-contrib_cd441f_d9c646src#com#mebigfatguy#fbcontrib#detect#SuspiciousUninitializedArray.txt   
+ :    108   :   270
+vi instance01-MinigamesAPI_be0fe3_779699API#src#main#java#com#comze_instancelabs#minigamesapi#util#Util.txt   
+ :    286   :   360
+vi instance01-MinigamesAPI_be0fe3_779699API#src#main#java#com#comze_instancelabs#minigamesapi#util#Util.txt   
+ :    286   :   360
+vi Bukkit-Bukkit_63e6ef_fc8d08src#main#java#org#bukkit#event#block#SignChangeEvent.txt   
+ :    17   :   19
+vi spotify-cassandra-reaper_021b69_ce19e1src#main#java#com#spotify#reaper#resources#TableResource.txt   
+ :    89   :   210
+vi spotify-cassandra-reaper_021b69_ce19e1src#main#java#com#spotify#reaper#resources#TableResource.txt   
+ :    89   :   210
+vi ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_778503_010490src#main#java#io#seqware#pancancer#CgpCnIndelSnvStrWorkflow.txt   
+ :    178   :   190
+vi marschraner-svm_7e5c9d_1d84acsrc#main#java#ch#metzenthin#svm#domain#commands#CreateWordTableCommand.txt   
+ :    149   :   151
+vi apache-struts_13955f_0ea3fccore#src#main#java#org#apache#struts2#dispatcher#FilterDispatcher.txt   
+ :    194   :   255
+vi AMOSTeam3-amos-ss15-proj3_5a49ff_cd9c21src#main#java#de#fau#osr#gui#GUITrackerToModelAdapter.txt   
+ :    222   :   227
+vi TeamExodus-external_gson_91581a_97e848src#main#java#com#google#gson#Gson.txt   
+ :    166   :   185
+vi rhuss-docker-maven-plugin_0a4933_2cb42dsrc#main#java#org#jolokia#docker#maven#BuildMojo.txt   
+ :    63   :   68
+vi rhuss-docker-maven-plugin_0a4933_2cb42dsrc#main#java#org#jolokia#docker#maven#BuildMojo.txt   
+ :    64   :   68
+vi ARUP-NGS-Pipeline_3ff81b_578114src#main#java#alnGenerator#VCFReader.txt   
+ :    37   :   53
+vi ARUP-NGS-Pipeline_3ff81b_578114src#main#java#alnGenerator#VCFReader.txt   
+ :    37   :   53
+vi ARUP-NGS-Pipeline_3ff81b_578114src#main#java#alnGenerator#VCFReader.txt   
+ :    123   :   190
+vi apache-pdfbox_0562b2_1eda29fontbox#src#main#java#org#apache#fontbox#ttf#CmapSubtable.txt   
+ :    369   :   435
+vi minusone13-InvoicingSystem_bbb1b9_52a09esrc#main#java#presentation#managerui#JPBill.txt   
+ :    1009   :   1018
+vi msokolov-lux_34e12a_424fa0src#main#java#lux#saxon#SaxonTranslator.txt   
+ :    765   :   828
+vi msokolov-lux_34e12a_424fa0src#main#java#lux#saxon#SaxonTranslator.txt   
+ :    783   :   828
+vi msokolov-lux_34e12a_424fa0src#main#java#lux#saxon#SaxonTranslator.txt   
+ :    769   :   828
+vi msokolov-lux_34e12a_424fa0src#main#java#lux#saxon#SaxonTranslator.txt   
+ :    771   :   828
+vi diirt-graphene_5f5915_5056d8graphene#src#main#java#org#epics#graphene#IntensityGraph2DRenderer.txt   
+ :    600   :   695
+vi diirt-graphene_5f5915_5056d8graphene#src#main#java#org#epics#graphene#IntensityGraph2DRenderer.txt   
+ :    635   :   695
+vi mebigfatguy-fb-contrib_1f77c9_da2207src#com#mebigfatguy#fbcontrib#detect#ReflectionOnObjectMethods.txt   
+ :    130   :   267
+vi The-Dream-Team-Tardis_239499_b34977src#main#java#me#dreamteam#tardis#Database.txt   
+ :    101   :   123
+vi The-Dream-Team-Tardis_239499_b34977src#main#java#me#dreamteam#tardis#Database.txt   
+ :    101   :   123
+vi rasto-lcmc_085f91_c05d83src#main#java#lcmc#data#Host.txt   
+ :    845   :   883
+vi rasto-lcmc_085f91_c05d83src#main#java#lcmc#data#Host.txt   
+ :    845   :   883
+vi forcedotcom-phoenix_1a087b_1c66dbsrc#main#java#com#salesforce#phoenix#util#CSVLoader.txt   
+ :    104   :   153
+vi forcedotcom-phoenix_1a087b_1c66dbsrc#main#java#com#salesforce#phoenix#util#CSVLoader.txt   
+ :    104   :   153
+vi shabbies-clockwork_964632_327a6asrc#main#java#servlet#FacebookLoginServlet.txt   
+ :    88   :   120
+vi xetorthio-jedis_6301ff_af309bsrc#main#java#redis#clients#jedis#HostAndPort.txt   
+ :    24   :   34
+vi antoine-tran-Hedera_c2c642_e40c6bjava#main#org#hedera#io#input#WikiRevisionPageInputFormat.txt   
+ :    248   :   469
+vi antoine-tran-Hedera_c2c642_e40c6bjava#main#org#hedera#io#input#WikiRevisionPageInputFormat.txt   
+ :    248   :   469
+vi antoine-tran-Hedera_c2c642_e40c6bjava#main#org#hedera#io#input#WikiRevisionPageInputFormat.txt   
+ :    248   :   469
+vi antoine-tran-Hedera_c2c642_e40c6bjava#main#org#hedera#io#input#WikiRevisionPageInputFormat.txt   
+ :    248   :   469
+vi ARUP-NGS-Pipeline_7e0fff_d57559src#main#java#alnGenerator#VCFReader.txt   
+ :    37   :   53
+vi ARUP-NGS-Pipeline_7e0fff_d57559src#main#java#alnGenerator#VCFReader.txt   
+ :    37   :   53
+vi ARUP-NGS-Pipeline_7e0fff_d57559src#main#java#alnGenerator#VCFReader.txt   
+ :    122   :   190
+vi minusone13-InvoicingSystem_7ee49f_f260afsrc#main#java#userui#TestFrame.txt   
+ :    28   :   41
+vi xetorthio-jedis_b24853_c331bfsrc#main#java#redis#clients#jedis#Connection.txt   
+ :    168   :   177
+vi xetorthio-jedis_b24853_c331bfsrc#main#java#redis#clients#jedis#Connection.txt   
+ :    169   :   177
+vi xetorthio-jedis_b24853_c331bfsrc#main#java#redis#clients#jedis#Connection.txt   
+ :    167   :   177
+vi ansell-owlapi_efe155_926263api#src#main#java#org#semanticweb#owlapi#util#OWLObjectWalker.txt   
+ :    63   :   69
+vi notthebees-languagegames_e953c3_d0a6fdsrc#main#java#paddy#analysis#CommunicationAssertion.txt   
+ :    13   :   14
+vi msokolov-lux_11ea41_0c818esrc#main#java#lux#solr#SolrIndexConfig.txt   
+ :    153   :   164
+vi ClemsonRSRG-RESOLVE_c15b01_cd708asrc#main#java#edu#clemson#cs#r2jt#init#Controller.txt   
+ :    1719   :   1742
+vi ClemsonRSRG-RESOLVE_c15b01_cd708asrc#main#java#edu#clemson#cs#r2jt#init#Controller.txt   
+ :    1718   :   1742
+vi EngineHub-CommandHelper_e03772_dc085bsrc#main#java#com#laytonsmith#aliasengine#Static.txt   
+ :    314   :   322
+vi GenomicParisCentre-eoulsan_1ef41f_76be2asrc#main#java#fr#ens#transcriptome#eoulsan#steps#MergerStep.txt   
+ :    199   :   201
+vi GenomicParisCentre-eoulsan_1ef41f_76be2asrc#main#java#fr#ens#transcriptome#eoulsan#steps#MergerStep.txt   
+ :    109   :   154
+vi simon-eastwood-DependencyCheckCM_83d109_2266d8src#main#java#org#codesecure#dependencycheck#data#cpe#Index.txt   
+ :    271   :   287
+vi simon-eastwood-DependencyCheckCM_83d109_2266d8src#main#java#org#codesecure#dependencycheck#data#cpe#Index.txt   
+ :    271   :   287
+vi cismet-cismet-gui-commons_d70bb9_40c578src#main#java#de#cismet#tools#gui#downloadmanager#DownloadManager.txt   
+ :    341   :   381
+vi karamelchef-karamel_92b9b2_00fd79karamel-core#src#main#java#se#kth#karamel#client#api#KaramelApiImpl.txt   
+ :    317   :   338
+vi karamelchef-karamel_92b9b2_00fd79karamel-core#src#main#java#se#kth#karamel#client#api#KaramelApiImpl.txt   
+ :    318   :   338
+vi kohsuke-github-api_23c56f_efa48asrc#main#java#org#kohsuke#github#Requester.txt   
+ :    295   :   311
+vi kohsuke-github-api_23c56f_efa48asrc#main#java#org#kohsuke#github#Requester.txt   
+ :    295   :   311
+vi minusone13-InvoicingSystem_d3b908_987e53src#main#java#data#commoditydata#StubCategoryData.txt   
+ :    45   :   56
+vi minusone13-InvoicingSystem_d3b908_987e53src#main#java#data#commoditydata#StubCategoryData.txt   
+ :    37   :   56
+vi minusone13-InvoicingSystem_d3b908_987e53src#main#java#data#commoditydata#StubCategoryData.txt   
+ :    96   :   101
+vi aherbert-GDSC-SMLM_400bd5_01c69asrc#main#java#gdsc#smlm#ij#results#IJTablePeakResults.txt   
+ :    304   :   321
+vi roundrop-facebook4j_331fb4_661f46facebook4j-core#src#main#java#facebook4j#FacebookImpl.txt   
+ :    2332   :   2333
+vi grzegorz2047-OpenGuild2047_b09e51_fd8e33src#main#java#pl#grzegorz2047#openguild2047#managers#TagManager.txt   
+ :    114   :   128
+vi Activiti-Activiti_b0fc18_f88c09modules#activiti-engine#src#main#java#org#activiti#engine#impl#event#AbstractEventHandler.txt   
+ :    98   :   109
+vi ClemsonRSRG-RESOLVE_015188_1b3745src#main#java#edu#clemson#cs#r2jt#verification#PrintAssertions.txt   
+ :    934   :   979
+vi owlcs-owlapi_37893a_b9052etools#src#main#java#com#clarkparsia#owlapi#explanation#BlackBoxExplanation.txt   
+ :    123   :   132
+vi owlcs-owlapi_37893a_b9052etools#src#main#java#com#clarkparsia#owlapi#explanation#BlackBoxExplanation.txt   
+ :    121   :   132
+vi mojohaus-nbm-maven-plugin_4e1121_74f7b1src#main#java#org#codehaus#mojo#nbm#AbstractNbmMojo.txt   
+ :    288   :   298
+vi sesuncedu-htmlparser_93be3f_e6edb3src#nu#validator#htmlparser#impl#TreeBuilder.txt   
+ :    538   :   557
+vi pendelhaven3-magic_ae161f_bc4b1bsrc#main#java#com#pj#magic#gui#panels#LoginPanel.txt   
+ :    55   :   64
+vi antoine-tran-Hedera_c2c642_e40c6bjava#main#org#hedera#io#input#WikiRevisionDiffInputFormat.txt   
+ :    266   :   487
+vi antoine-tran-Hedera_c2c642_e40c6bjava#main#org#hedera#io#input#WikiRevisionDiffInputFormat.txt   
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+vi ClemsonRSRG-RESOLVE_80b1dc_0392e4src#main#java#edu#clemson#cs#r2jt#verification#Verifier.txt   
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+vi ClemsonRSRG-RESOLVE_80b1dc_0392e4src#main#java#edu#clemson#cs#r2jt#verification#Verifier.txt   
+ :    6300   :   6801
+vi ClemsonRSRG-RESOLVE_80b1dc_0392e4src#main#java#edu#clemson#cs#r2jt#verification#Verifier.txt   
+ :    6300   :   6801
+vi ClemsonRSRG-RESOLVE_80b1dc_0392e4src#main#java#edu#clemson#cs#r2jt#verification#Verifier.txt   
+ :    6300   :   6801
+vi ClemsonRSRG-RESOLVE_80b1dc_0392e4src#main#java#edu#clemson#cs#r2jt#verification#Verifier.txt   
+ :    6300   :   6801
+vi ClemsonRSRG-RESOLVE_80b1dc_0392e4src#main#java#edu#clemson#cs#r2jt#verification#Verifier.txt   
+ :    6300   :   6801
+vi ClemsonRSRG-RESOLVE_80b1dc_0392e4src#main#java#edu#clemson#cs#r2jt#verification#Verifier.txt   
+ :    6300   :   6801
+vi ClemsonRSRG-RESOLVE_80b1dc_0392e4src#main#java#edu#clemson#cs#r2jt#verification#Verifier.txt   
+ :    6300   :   6801
diff --git a/logs/2017-09-16.log b/logs/2017-09-16.log
new file mode 100644
index 0000000..e69de29
diff --git a/logs/2017-09-17.log b/logs/2017-09-17.log
new file mode 100644
index 0000000..e69de29
diff --git a/logs/2017-09-18.log b/logs/2017-09-18.log
new file mode 100644
index 0000000..e69de29
diff --git a/logs/2017-09-19.log b/logs/2017-09-19.log
new file mode 100644
index 0000000..e69de29
diff --git a/logs/HaveSourceCode.txt b/logs/HaveSourceCode.txt
new file mode 100644
index 0000000..7ec0ed2
--- /dev/null
+++ b/logs/HaveSourceCode.txt
@@ -0,0 +1,87622 @@
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diff --git a/logs/MultiMethodsOrFieldOrInnerClasses.txt b/logs/MultiMethodsOrFieldOrInnerClasses.txt
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+prev_SpigotMC-Spigot-API_5c8bc6_e35037src#main#java#org#bukkit#event#player#PlayerBedEnterEvent.java : 13 : 35
+prev_SpigotMC-Spigot-API_5c8bc6_e35037src#main#java#org#bukkit#event#player#PlayerBedLeaveEvent.java : 15 : 25
+prev_SpigotMC-Spigot-API_5c8bc6_e35037src#main#java#org#bukkit#event#player#PlayerChangedWorldEvent.java : 12 : 17
+prev_SpigotMC-Spigot-API_5c8bc6_e35037src#main#java#org#bukkit#event#player#PlayerGameModeChangeEvent.java : 14 : 27
+prev_SpigotMC-Spigot-API_5c8bc6_e35037src#main#java#org#bukkit#event#player#PlayerInteractEntityEvent.java : 13 : 34
+prev_SpigotMC-Spigot-API_5c8bc6_e35037src#main#java#org#bukkit#event#player#PlayerInteractEvent.java : 25 : 175
+prev_SpigotMC-Spigot-API_5c8bc6_e35037src#main#java#org#bukkit#event#player#PlayerInventoryEvent.java : 14 : 24
+prev_SpigotMC-Spigot-API_5c8bc6_e35037src#main#java#org#bukkit#event#player#PlayerItemHeldEvent.java : 14 : 34
+prev_SpigotMC-Spigot-API_5c8bc6_e35037src#main#java#org#bukkit#event#player#PlayerJoinEvent.java : 13 : 33
+prev_SpigotMC-Spigot-API_5c8bc6_e35037src#main#java#org#bukkit#event#player#PlayerPreLoginEvent.java : 17 : 94
+prev_SpigotMC-Spigot-API_5c8bc6_e35037src#main#java#org#bukkit#event#player#PlayerQuitEvent.java : 14 : 34
+prev_SpigotMC-Spigot-API_5c8bc6_e35037src#main#java#org#bukkit#event#player#PlayerRespawnEvent.java : 12 : 41
+prev_SpigotMC-Spigot-API_5c8bc6_e35037src#main#java#org#bukkit#event#player#PlayerTeleportEvent.java : 12 : 40
+prev_SpigotMC-Spigot-API_5c8bc6_e35037src#main#java#org#bukkit#event#server#MapInitializeEvent.java : 14 : 24
+prev_SpigotMC-Spigot-API_5c8bc6_e35037src#main#java#org#bukkit#event#server#PluginEvent.java : 13 : 24
+prev_SpigotMC-Spigot-API_5c8bc6_e35037src#main#java#org#bukkit#event#server#ServerCommandEvent.java : 16 : 49
+prev_SpigotMC-Spigot-API_5c8bc6_e35037src#main#java#org#bukkit#event#vehicle#VehicleBlockCollisionEvent.java : 14 : 24
+prev_SpigotMC-Spigot-API_5c8bc6_e35037src#main#java#org#bukkit#event#vehicle#VehicleDestroyEvent.java : 18 : 37
+prev_SpigotMC-Spigot-API_5c8bc6_e35037src#main#java#org#bukkit#event#vehicle#VehicleEnterEvent.java : 16 : 35
+prev_SpigotMC-Spigot-API_5c8bc6_e35037src#main#java#org#bukkit#event#vehicle#VehicleEntityCollisionEvent.java : 13 : 48
+prev_SpigotMC-Spigot-API_5c8bc6_e35037src#main#java#org#bukkit#event#vehicle#VehicleEvent.java : 14 : 24
+prev_SpigotMC-Spigot-API_5c8bc6_e35037src#main#java#org#bukkit#event#vehicle#VehicleExitEvent.java : 16 : 35
+prev_SpigotMC-Spigot-API_5c8bc6_e35037src#main#java#org#bukkit#event#vehicle#VehicleMoveEvent.java : 15 : 36
+prev_SpigotMC-Spigot-API_5c8bc6_e35037src#main#java#org#bukkit#event#weather#LightningStrikeEvent.java : 17 : 35
+prev_SpigotMC-Spigot-API_5c8bc6_e35037src#main#java#org#bukkit#event#weather#ThunderChangeEvent.java : 16 : 34
+prev_SpigotMC-Spigot-API_5c8bc6_e35037src#main#java#org#bukkit#event#weather#WeatherChangeEvent.java : 16 : 34
+prev_SpigotMC-Spigot-API_5c8bc6_e35037src#main#java#org#bukkit#event#weather#WeatherEvent.java : 14 : 24
+prev_SpigotMC-Spigot-API_5c8bc6_e35037src#main#java#org#bukkit#event#world#ChunkEvent.java : 13 : 23
+prev_SpigotMC-Spigot-API_5c8bc6_e35037src#main#java#org#bukkit#event#world#ChunkLoadEvent.java : 13 : 24
+prev_SpigotMC-Spigot-API_5c8bc6_e35037src#main#java#org#bukkit#event#world#SpawnChangeEvent.java : 15 : 25
+prev_SpigotMC-Spigot-API_5c8bc6_e35037src#main#java#org#bukkit#event#world#WorldUnloadEvent.java : 14 : 23
+prev_SpigotMC-Spigot-API_66e70b_00c797src#main#java#org#bukkit#event#player#PlayerAnimationEvent.java : 18 : 30
+prev_SpigotMC-Spigot-API_778852_158906src#main#java#org#bukkit#event#block#BlockBreakEvent.java : 18 : 38
+prev_SpigotMC-Spigot-API_778852_158906src#main#java#org#bukkit#event#block#BlockFromToEvent.java : 17 : 49
+prev_SpigotMC-Spigot-API_778852_158906src#main#java#org#bukkit#event#entity#EntityDamageByBlockEvent.java : 17 : 27
+prev_SpigotMC-Spigot-API_778852_158906src#main#java#org#bukkit#event#entity#EntityDamageByEntityEvent.java : 16 : 32
+prev_SpigotMC-Spigot-API_778852_158906src#main#java#org#bukkit#event#entity#EntityDamageByProjectileEvent.java : 14 : 33
+prev_SpigotMC-Spigot-API_778852_158906src#main#java#org#bukkit#event#vehicle#VehicleExitEvent.java : 17 : 37
+prev_SpigotMC-Spigot-API_778852_158906src#main#java#org#bukkit#event#vehicle#VehicleMoveEvent.java : 17 : 38
+prev_SpigotMC-Spigot-API_778852_158906src#main#java#org#bukkit#event#world#ChunkLoadEvent.java : 13 : 24
+prev_SpigotMC-Spigot-API_902fb0_75d550src#main#java#org#bukkit#event#player#PlayerBucketEmptyEvent.java : 15 : 54
+prev_SpigotMC-Spigot-API_902fb0_75d550src#main#java#org#bukkit#event#player#PlayerBucketFillEvent.java : 15 : 54
+prev_SpigotMC-Spigot-API_9ca268_c54ec0src#main#java#org#bukkit#event#entity#EntityPortalEnterEvent.java : 15 : 24
+prev_SpigotMC-Spigot-API_9ca268_c54ec0src#main#java#org#bukkit#event#player#PlayerPortalEvent.java : 11 : 20
+prev_SpigotMC-Spigot-API_9ca268_c54ec0src#main#java#org#bukkit#event#world#PortalCreateEvent.java : 12 : 42
+prev_SpigotMC-Spigot-API_b1451f_4155a4src#main#java#org#bukkit#event#block#BlockPistonExtendEvent.java : 14 : 41
+prev_SpigotMC-Spigot-API_b1451f_4155a4src#main#java#org#bukkit#event#block#BlockPistonRetractEvent.java : 8 : 18
+prev_SpigotMC-Spigot-API_bcc738_f2b19esrc#main#java#org#bukkit#event#server#ServerCommandEvent.java : 13 : 41
+prev_SpigotMC-Spigot-API_d9c22b_dce83bsrc#main#java#org#bukkit#event#server#MapInitializeEvent.java : 13 : 23
+prev_SpigotMC-Spigot-API_ef124b_d1f1b2src#main#java#org#bukkit#event#entity#EntityDeathEvent.java : 14 : 24
+prev_SpigotMC-Spigot-API_f4a2e8_31964bsrc#main#java#org#bukkit#event#player#PlayerPortalEvent.java : 13 : 23
+prev_SpigotMC-Spigot-API_fb79a3_7cab3dsrc#main#java#org#bukkit#event#entity#EntityDamageByProjectileEvent.java : 13 : 33
+prev_SpoutDev-Spout_3bec58_035cd9src#main#java#org#getspout#api#inventory#Inventory.java : 9 : 32
+prev_SpoutDev-Spout_4e46cc_ce20acsrc#main#java#org#spout#math#Matrix2.java : 321 : 329
+prev_SpoutDev-Spout_4e46cc_ce20acsrc#main#java#org#spout#math#Matrix3.java : 444 : 452
+prev_SpoutDev-Spout_7af7c1_7cd2c9src#main#java#org#spout#math#matrix#Matrix.java : 600 : 612
+prev_Studentmediene-Momus_491bb0_e45c39src#main#java#no#dusken#momus#authentication#Token.java : 8 : 17
+prev_TeamExodus-external_gson_0bd701_000a58src#main#java#com#google#gson#internal#LinkedHashTreeMap.java : 41 : 846
+prev_TeamExodus-external_gson_24d67a_cc7708src#test#java#com#google#gson#internal#LinkedHashTreeMap.java : 40 : 876
+prev_TeamExodus-external_gson_63c611_8a5405src#main#java#com#google#gson#internal#LazilyParsedNumber.java : 29 : 67
+prev_TeamExodus-external_gson_f8104a_bf08a0src#main#java#com#google#gson#internal#LazilyParsedNumber.java : 29 : 67
+prev_tengstrand-Laja_dd37e3_21eb52src#test#java#net#sf#laja#cdd#testgen#state#AddressState.java : 17 : 273
+prev_tengstrand-Laja_dd37e3_21eb52src#test#java#net#sf#laja#cdd#testgen#state#AddressState.java : 126 : 264
+prev_tengstrand-Laja_dd37e3_21eb52src#test#java#net#sf#laja#cdd#testgen#state#PersonState.java : 32 : 498
+prev_tengstrand-Laja_dd37e3_21eb52src#test#java#net#sf#laja#cdd#testgen#state#PersonState.java : 229 : 481
+prev_tengstrand-Laja_ec9e70_15dfcdsrc#main#java#net#sf#laja#cdd#testgen#state#AddressState.java : 230 : 260
+prev_tengstrand-Laja_ec9e70_15dfcdsrc#main#java#net#sf#laja#cdd#testgen#state#PersonState.java : 427 : 502
+prev_thinkaurelius-titan_02f228_22ccebsrc#main#java#com#thinkaurelius#faunus#hdfs#GraphFilter.java : 15 : 25
+prev_thinkaurelius-titan_104742_6723c0src#main#java#com#thinkaurelius#faunus#hdfs#OnlyGraphFilter.java : 15 : 25
+prev_thinkaurelius-titan_b696b7_730e9fsrc#main#java#com#thinkaurelius#faunus#hdfs#NoSideEffectFilter.java : 15 : 25
+prev_thinkaurelius-titan_c28673_c311d3src#main#java#com#thinkaurelius#faunus#mapreduce#FaunusCompiler.java : 637 : 647
+prev_thinkaurelius-titan_c311d3_57a932src#main#java#com#thinkaurelius#faunus#hdfs#HDFSTools.java : 100 : 110
+prev_threerings-depot_730f4c_b42ec3src#main#java#com#samskivert#depot#Tuple2.java : 36 : 44
+prev_UnifiedViews-Plugin-DevEnv_1dcc53_d951eduv-dpu-helpers#src#main#java#eu#unifiedviews#helpers#dpu#vaadin#validator#UrlValidator.java : 21 : 65
+prev_UnifiedViews-Plugin-DevEnv_6b5c02_1a23dduv-dpu-helpers#src#main#java#eu#unifiedviews#helpers#dpu#vaadin#dialog#AboutTab.java : 30 : 209
+prev_UnifiedViews-Plugin-DevEnv_8152a4_785800uv-dpu-helpers#src#main#java#eu#unifiedviews#helpers#dpu#vaadin#validator#UrlValidator.java : 21 : 65
+prev_UnifiedViews-Plugin-DevEnv_878992_bcf189uv-dpu-helpers#src#main#java#eu#unifiedviews#helpers#dpu#vaadin#dialog#AboutTab.java : 30 : 209
+prev_UnifiedViews-Plugin-DevEnv_b164b1_a715c0uv-dpu-helpers#src#main#java#eu#unifiedviews#helpers#dpu#vaadin#validator#UrlValidator.java : 16 : 45
+prev_VincSch-Photoplatform_Angular_Spring_3d2c04_80158dsrc#main#java#de#htw#sdf#photoplatform#persistence#models#image#SysCategory.java : 22 : 76
+prev_VincSch-Photoplatform_Angular_Spring_5c90df_2547f2src#main#java#de#htw#sdf#photoplatform#webservice#dto#UserData.java : 51 : 297
+prev_VincSch-Photoplatform_Angular_Spring_9a7764_15560bsrc#main#java#de#htw#sdf#photoplatform#webservice#dto#PurchaseData.java : 27 : 82
+prev_VincSch-Photoplatform_Angular_Spring_f98c9b_4e7165src#main#java#de#htw#sdf#photoplatform#webservice#dto#PurchaseData.java : 27 : 82
+prev_wildfly-security-wildfly-elytron_db2858_dd2ef6src#main#java#org#wildfly#security#password#impl#UnixSHACryptPasswordImpl.java : 40 : 108
+prev_zanata-zanata-api_649efa_615e32zanata-common-api#src#main#java#org#zanata#common#TranslationStatistics.java : 46 : 214
+prev_zanata-zanata-api_649efa_615e32zanata-common-api#src#main#java#org#zanata#common#TranslationStatistics.java : 46 : 214
+prev_zanata-zanata-api_649efa_615e32zanata-common-api#src#main#java#org#zanata#common#TranslationStatistics.java : 46 : 214
+prev_zanata-zanata-api_649efa_615e32zanata-common-api#src#main#java#org#zanata#common#TranslationStatistics.java : 46 : 214
+prev_zanata-zanata-api_649efa_615e32zanata-common-api#src#main#java#org#zanata#common#TranslationStatistics.java : 46 : 214
+prev_zanata-zanata-api_649efa_615e32zanata-common-api#src#main#java#org#zanata#common#TranslationStatistics.java : 46 : 214
+prev_zanata-zanata-api_649efa_615e32zanata-common-api#src#main#java#org#zanata#common#TranslationStatistics.java : 46 : 214
+prev_zanata-zanata-api_649efa_615e32zanata-common-api#src#main#java#org#zanata#common#TranslationStatistics.java : 46 : 214
+prev_zanata-zanata-api_8d4828_aeeb97zanata-common-api#src#main#java#org#zanata#rest#dto#stats#contribution#ContributionStatistics.java : 13 : 94
+prev_zanata-zanata-api_e377f3_b5c470zanata-common-api#src#main#java#org#zanata#common#TranslationStatistics.java : 60 : 259
+prev_zendesk-maxwell_23869d_024cf8src#main#java#com#zendesk#maxwell#RowMap.java : 16 : 135
+prev_zendesk-maxwell_2c9ae7_a203bdsrc#main#java#com#zendesk#maxwell#RowMap.java : 16 : 135
+prev_zendesk-maxwell_3fdf2a_23869dsrc#main#java#com#zendesk#maxwell#RowMap.java : 9 : 47
+prev_zendesk-maxwell_71a288_f50122src#main#java#com#zendesk#maxwell#MaxwellAbstractRowsEvent.java : 200 : 237
+prev_zendesk-maxwell_739033_e6c89bsrc#main#java#com#zendesk#maxwell#MaxwellAbstractRowsEvent.java : 199 : 233
+prev_zendesk-maxwell_8aec1e_534cf7src#main#java#com#zendesk#maxwell#RowMap.java : 9 : 47
+prev_zendesk-maxwell_9bb17d_2272b2src#main#java#com#zendesk#maxwell#MaxwellAbstractRowsEvent.java : 200 : 237
+prev_zendesk-maxwell_d9b984_d0f921src#main#java#com#zendesk#maxwell#RowMap.java : 9 : 47
+prev_zendesk-maxwell_e6c89b_8f1f0fsrc#main#java#com#zendesk#maxwell#MaxwellAbstractRowsEvent.java : 200 : 237
+prev_zendesk-maxwell_f50122_2c9ae7src#main#java#com#zendesk#maxwell#RowMap.java : 9 : 47
+CN_IMPLEMENTS_CLONE_BUT_NOT_CLONEABLE
+prev_ClemsonRSRG-RESOLVE_9ee405_202d6dsrc#main#java#edu#clemson#cs#r2jt#absyn#FunctionArgList.java : 100 : 109
diff --git a/logs/Null.txt b/logs/Null.txt
new file mode 100644
index 0000000..3b1b8cd
--- /dev/null
+++ b/logs/Null.txt
@@ -0,0 +1,124 @@
+1
+    BC_VACUOUS_INSTANCEOF   Ignore it.  no source code, no source code change
+    CN_IDIOM_NO_SUPER_CALL  Ignore it. no source code, no source code change
+    CN_IMPLEMENTS_CLONE_BUT_NOT_CLONEABLE  Ignore it. no source code, no source code change
+    DLS_DEAD_LOCAL_STORE Ignore it. no source code, no source code change
+    DM_DEFAULT_ENCODING
+    DM_NUMBER_CTOR
+    DM_STRING_CTOR
+    DM_STRING_VOID_CTOR
+    DP_DO_INSIDE_DO_PRIVILEGED
+    EI_EXPOSE_REP
+    EQ_COMPARETO_USE_OBJECT_EQUALS
+    EQ_DOESNT_OVERRIDE_EQUALS
+    EQ_SELF_USE_OBJECT
+    HE_EQUALS_USE_HASHCODE
+    HE_HASHCODE_USE_OBJECT_EQUALS
+    HE_INHERITS_EQUALS_USE_HASHCODE
+    IS2_INCONSISTENT_SYNC
+    MS_CANNOT_BE_FINAL
+    MS_MUTABLE_ARRAY
+    MS_PKGPROTECT
+    MS_SHOULD_BE_FINAL
+    NM_CLASS_NAMING_CONVENTION
+    NM_CLASS_NOT_EXCEPTION
+    NM_SAME_SIMPLE_NAME_AS_SUPERCLASS
+    OBL_UNSATISFIED_OBLIGATION_EXCEPTION_EDGE
+    OS_OPEN_STREAM
+    OS_OPEN_STREAM_EXCEPTION_PATH
+    RI_REDUNDANT_INTERFACES
+    SA_FIELD_DOUBLE_ASSIGNMENT
+    SE_COMPARATOR_SHOULD_BE_SERIALIZABLE
+    SE_NO_SERIALVERSIONID
+    SIO_SUPERFLUOUS_INSTANCEOF
+    UCF_USELESS_CONTROL_FLOW
+    UG_SYNC_SET_UNSYNC_GET
+    UPM_UNCALLED_PRIVATE_METHOD
+    URF_UNREAD_FIELD
+    URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD
+    UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR
+    UWF_UNWRITTEN_FIELD
+    UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD
+    WMI_WRONG_MAP_ITERATOR
+-1
+    CI_CONFUSED_INHERITANCE
+    CO_ABSTRACT_SELF
+    DMI_COLLECTION_OF_URLS
+    EQ_ABSTRACT_SELF
+    HE_SIGNATURE_DECLARES_HASHING_OF_UNHASHABLE_CLASS
+    JCIP_FIELD_ISNT_FINAL_IN_IMMUTABLE_CLASS
+    ME_MUTABLE_ENUM_FIELD
+    MF_CLASS_MASKS_FIELD
+    MS_CANNOT_BE_FINAL
+    MS_PKGPROTECT
+    MS_SHOULD_BE_FINAL
+    NM_FIELD_NAMING_CONVENTION
+    NM_SAME_SIMPLE_NAME_AS_INTERFACE
+    SE_BAD_FIELD
+    SE_TRANSIENT_FIELD_NOT_RESTORED
+    STCAL_STATIC_SIMPLE_DATE_FORMAT_INSTANCE
+    UPM_UNCALLED_PRIVATE_METHOD
+    UUF_UNUSED_FIELD
+    UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD
+    UWF_NULL_FIELD
+    UWF_UNWRITTEN_FIELD
+    UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD
+    VO_VOLATILE_REFERENCE_TO_ARRAY
+
+    
+    
+    CI_CONFUSED_INHERITANCE  change modifier of fields from protected to private or public, or remove final of class.
+	CO_ABSTRACT_SELF    Interface, remove compareTo() method.
+    
+    SE_NO_SERIALVERSIONID  add a field: serialVersionUID
+    EQ_ABSTRACT_SELF    Interface, remove compareTo() method.
+    EQ_COMPARETO_USE_OBJECT_EQUALS:    Update or Delete compareTo(), Add equals()
+	EQ_DOESNT_OVERRIDE_EQUALS override equals()
+	HE_SIGNATURE_DECLARES_HASHING_OF_UNHASHABLE_CLASS  remove equals()  only one instance
+	ME_MUTABLE_ENUM_FIELD  enum, field add final.
+    MF_CLASS_MASKS_FIELD, change super class or delete the field with a same name in super class.
+    MS_SHOULD_BE_FINAL  Add final key word
+	STCAL_STATIC_SIMPLE_DATE_FORMAT_INSTANCE  remove public static final DateFormat DATE_FORMAT....  or SimpleDateFormat
+    UUF_UNUSED_FIELD  remove unused fields.  not sure
+	UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD  field
+	UWF_NULL_FIELD  update field, remove field
+	UWF_UNWRITTEN_FIELD  field
+	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD remove field
+	VO_VOLATILE_REFERENCE_TO_ARRAY  field
+	
+	all GumTree results. class, field, method, //statements.
+	     
+NM_SAME_SIMPLE_NAME_AS_INTERFACE  rename class name or remove super class
+NM_SAME_SIMPLE_NAME_AS_SUPERCLASS,   class name
+NM_METHOD_NAMING_CONVENTION
+NM_CLASS_NAMING_CONVENTION  class name
+NM_CLASS_NOT_EXCEPTION  class name
+RI_REDUNDANT_INTERFACES  class implemented interface
+SE_NO_SUITABLE_CONSTRUCTOR  Serializable  Class level  remove Serializable interface and serialVersionUID
+
+SIC_INNER_SHOULD_BE_STATIC  add static to inner class, not sure, delete it,   如果是匿名内部类，该如何处理？ ，其他的直接内部类的范围。
+SIC_INNER_SHOULD_BE_STATIC_NEEDS_THIS  同上
+===
+CO_ABSTRACT_SELF  inner class
+SE_INNER_CLASS  inner class
+SE_COMPARATOR_SHOULD_BE_SERIALIZABLE, inner class, 读definition
+SE_BAD_FIELD_INNER_CLASS inner class
+SIC_INNER_SHOULD_BE_STATIC_ANON  inner class
+
+HE_INHERITS_EQUALS_USE_HASHCODE inner class or class
+CN_IDIOM  add clone method. or update clone method
+
+DM_NUMBER_CTOR  multi v multi patches
+EQ_COMPARETO_USE_OBJECT_EQUALS,    the same as before
+IC_INIT_CIRCULARITY, multi V, multi patches>
+
+
+
+SE_NO_SUITABLE_CONSTRUCTOR_FOR_EXTERNALIZATION, add a constructor or add public to old constructor, 
+
+
+
+NP_NONNULL_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR
+
+SE_NO_SERIALVERSIONID   change superclass or interface, add field or remove @SuppressWarnings("serial"),   some are inner class
+    
\ No newline at end of file
diff --git a/logs/NullSourceCode.txt b/logs/NullSourceCode.txt
new file mode 100644
index 0000000..75e1853
--- /dev/null
+++ b/logs/NullSourceCode.txt
@@ -0,0 +1,1305 @@
+UUF_UNUSED_FIELD : prev_0xCopy-RelaxFactory_aa9d34_931213rxf-couch#src#main#java#rxf#couch#driver#CouchMetaDriver.java : -1 : -1
+NM_FIELD_NAMING_CONVENTION : prev_aaron-santos-lanterna_4eac0e_33c490src#main#java#com#googlecode#lanterna#gui#component#TextGrid.java : -1 : -1
+NM_FIELD_NAMING_CONVENTION : prev_aaron-santos-lanterna_4eac0e_33c490src#main#java#com#googlecode#lanterna#gui#component#TextGrid.java : -1 : -1
+NM_FIELD_NAMING_CONVENTION : prev_aaron-santos-lanterna_5385e9_6e7be4src#main#java#com#googlecode#lanterna#gui#component#TextGrid.java : -1 : -1
+MF_CLASS_MASKS_FIELD : prev_Activiti-Activiti_0ea44a_749e0fmodules#activiti-engine#src#main#java#org#activiti#engine#impl#cmd#SubmitTaskFormCmd.java : -1 : -1
+UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR : prev_Activiti-Activiti_11bc1d_6c37a5modules#activiti-engine#src#main#java#org#activiti#engine#ProcessEngineConfiguration.java : 390 : 390
+MF_CLASS_MASKS_FIELD : prev_Activiti-Activiti_16e877_a6698bmodules#activiti-engine#src#main#java#org#activiti#engine#impl#cmd#SubmitTaskFormCmd.java : -1 : -1
+UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD : prev_Activiti-Activiti_2744c6_dcc190modules#activiti-engine#src#main#java#org#activiti#engine#impl#test#PluggableActivitiTestCase.java : -1 : -1
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+MF_CLASS_MASKS_FIELD : prev_Activiti-Activiti_542d1e_88f123modules#activiti-engine#src#main#java#org#activiti#engine#impl#bpmn#parser#BpmnParse.java : -1 : -1
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diff --git a/logs/NullV.txt b/logs/NullV.txt
new file mode 100644
index 0000000..e17bba4
--- /dev/null
+++ b/logs/NullV.txt
@@ -0,0 +1,3130 @@
+1
+    BC_VACUOUS_INSTANCEOF
+prev_ClemsonRSRG-RESOLVE_9ee405_202d6dsrc#main#java#edu#clemson#cs#r2jt#population#OldPopulator.java
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+prev_ClemsonRSRG-RESOLVE_9ee405_202d6dsrc#main#java#edu#clemson#cs#r2jt#absyn#VarExp.java
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+    CN_IMPLEMENTS_CLONE_BUT_NOT_CLONEABLE
+prev_ClemsonRSRG-RESOLVE_9ee405_202d6dsrc#main#java#edu#clemson#cs#r2jt#data#Location.java
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+    DLS_DEAD_LOCAL_STORE
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+prev_ClemsonRSRG-RESOLVE_9ee405_202d6dsrc#main#java#edu#clemson#cs#r2jt#verification#Verifier.java
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+    DM_DEFAULT_ENCODING
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+prev_ClemsonRSRG-RESOLVE_6adf7f_573169src#main#java#edu#clemson#cs#r2jt#congruenceclassprover#CongruenceClassProver.java
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+    UWF_UNWRITTEN_FIELD
+prev_SpigotMC-BungeeCord_e12bc1_4fb857proxy#src#main#java#net#md_5#bungee#UserConnection.java
+-1 : -1
+    UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD
+prev_junkdog-artemis-odb_723347_7f3576artemis-matrix#src#main#java#com#artemis#model#scan#ArtemisConfigurationData.java
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+-1 : -1
+prev_junkdog-artemis-odb_e9b4a7_bf4978artemis-weaver#src#main#java#com#artemis#meta#ClassMetadata.java
+-1 : -1
+    VO_VOLATILE_REFERENCE_TO_ARRAY
+prev_basho-riak-java-client_3c9bca_95c964src#main#java#com#basho#riak#pbc#RiakConnection.java
+-1 : -1
+prev_basho-riak-java-client_734fb7_9a398bsrc#main#java#com#basho#riak#client#DefaultRiakObject.java
+-1 : -1
+prev_basho-riak-java-client_c2dabe_b862e7src#main#java#com#basho#riak#client#util#BranchableInputStream.java
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diff --git a/logs/fixedTypes.txt b/logs/fixedTypes.txt
new file mode 100644
index 0000000..ce5c925
--- /dev/null
+++ b/logs/fixedTypes.txt
@@ -0,0 +1,339 @@
+SIC_INNER_SHOULD_BE_STATIC_ANON
+DLS_DEAD_LOCAL_STORE
+DM_CONVERT_CASE
+DM_DEFAULT_ENCODING
+UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR
+RCN_REDUNDANT_NULLCHECK_OF_NONNULL_VALUE
+NM_METHOD_NAMING_CONVENTION
+URF_UNREAD_FIELD
+BC_UNCONFIRMED_CAST
+REC_CATCH_EXCEPTION
+BC_UNCONFIRMED_CAST_OF_RETURN_VALUE
+SE_NO_SERIALVERSIONID
+UPM_UNCALLED_PRIVATE_METHOD
+VA_FORMAT_STRING_USES_NEWLINE
+MS_SHOULD_BE_FINAL
+RV_RETURN_VALUE_IGNORED_BAD_PRACTICE
+ST_WRITE_TO_STATIC_FROM_INSTANCE_METHOD
+EI_EXPOSE_REP2
+URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD
+WMI_WRONG_MAP_ITERATOR
+OBL_UNSATISFIED_OBLIGATION
+EI_EXPOSE_REP
+NP_LOAD_OF_KNOWN_NULL_VALUE
+DM_NUMBER_CTOR
+SIC_INNER_SHOULD_BE_STATIC
+SBSC_USE_STRINGBUFFER_CONCATENATION
+OS_OPEN_STREAM_EXCEPTION_PATH
+NP_NONNULL_RETURN_VIOLATION
+SF_SWITCH_NO_DEFAULT
+UWF_UNWRITTEN_FIELD
+DE_MIGHT_IGNORE
+IS2_INCONSISTENT_SYNC
+DM_BOXED_PRIMITIVE_FOR_PARSING
+RV_RETURN_VALUE_IGNORED_NO_SIDE_EFFECT
+ODR_OPEN_DATABASE_RESOURCE
+PZLA_PREFER_ZERO_LENGTH_ARRAYS
+RI_REDUNDANT_INTERFACES
+NP_NULL_ON_SOME_PATH_FROM_RETURN_VALUE
+UCF_USELESS_CONTROL_FLOW
+UC_USELESS_CONDITION
+NP_NULL_ON_SOME_PATH
+UC_USELESS_OBJECT
+DM_FP_NUMBER_CTOR
+MS_PKGPROTECT
+SQL_PREPARED_STATEMENT_GENERATED_FROM_NONCONSTANT_STRING
+OBL_UNSATISFIED_OBLIGATION_EXCEPTION_EDGE
+ES_COMPARING_STRINGS_WITH_EQ
+OS_OPEN_STREAM
+RCN_REDUNDANT_NULLCHECK_WOULD_HAVE_BEEN_A_NPE
+NP_PARAMETER_MUST_BE_NONNULL_BUT_MARKED_AS_NULLABLE
+SS_SHOULD_BE_STATIC
+FE_FLOATING_POINT_EQUALITY
+HE_EQUALS_USE_HASHCODE
+DM_EXIT
+NM_CONFUSING
+LI_LAZY_INIT_STATIC
+BX_UNBOXING_IMMEDIATELY_REBOXED
+EQ_COMPARETO_USE_OBJECT_EQUALS
+SQL_NONCONSTANT_STRING_PASSED_TO_EXECUTE
+NP_NULL_ON_SOME_PATH_EXCEPTION
+NP_UNWRITTEN_FIELD
+MS_MUTABLE_COLLECTION_PKGPROTECT
+UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD
+CN_IMPLEMENTS_CLONE_BUT_NOT_CLONEABLE
+DMI_HARDCODED_ABSOLUTE_FILENAME
+SE_BAD_FIELD
+DM_STRING_TOSTRING
+UUF_UNUSED_FIELD
+ICAST_INTEGER_MULTIPLY_CAST_TO_LONG
+EC_UNRELATED_TYPES
+BC_VACUOUS_INSTANCEOF
+ICAST_IDIV_CAST_TO_DOUBLE
+RCN_REDUNDANT_NULLCHECK_OF_NULL_VALUE
+ES_COMPARING_PARAMETER_STRING_WITH_EQ
+RV_RETURN_VALUE_IGNORED
+CI_CONFUSED_INHERITANCE
+DB_DUPLICATE_SWITCH_CLAUSES
+ODR_OPEN_DATABASE_RESOURCE_EXCEPTION_PATH
+NP_ALWAYS_NULL
+RpC_REPEATED_CONDITIONAL_TEST
+SE_BAD_FIELD_STORE
+NP_NULL_PARAM_DEREF
+GC_UNRELATED_TYPES
+DLS_DEAD_LOCAL_STORE_OF_NULL
+RC_REF_COMPARISON_BAD_PRACTICE
+MS_MUTABLE_ARRAY
+SE_INNER_CLASS
+UL_UNRELEASED_LOCK_EXCEPTION_PATH
+SE_COMPARATOR_SHOULD_BE_SERIALIZABLE
+CN_IDIOM_NO_SUPER_CALL
+NP_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD
+UC_USELESS_VOID_METHOD
+NP_NONNULL_PARAM_VIOLATION
+DMI_INVOKING_TOSTRING_ON_ARRAY
+DP_DO_INSIDE_DO_PRIVILEGED
+SF_SWITCH_FALLTHROUGH
+NP_BOOLEAN_RETURN_NULL
+NM_CLASS_NOT_EXCEPTION
+SIO_SUPERFLUOUS_INSTANCEOF
+NP_GUARANTEED_DEREF
+
+UL_UNRELEASED_LOCK
+IP_PARAMETER_IS_DEAD_BUT_OVERWRITTEN
+HE_INHERITS_EQUALS_USE_HASHCODE
+MS_CANNOT_BE_FINAL
+DB_DUPLICATE_BRANCHES
+STCAL_INVOKE_ON_STATIC_DATE_FORMAT_INSTANCE
+MS_MUTABLE_COLLECTION
+IL_INFINITE_RECURSIVE_LOOP
+VO_VOLATILE_INCREMENT
+JLM_JSR166_UTILCONCURRENT_MONITORENTER
+NP_NULL_PARAM_DEREF_NONVIRTUAL
+DM_STRING_CTOR
+UR_UNINIT_READ
+XFB_XML_FACTORY_BYPASS
+RV_EXCEPTION_NOT_THROWN
+UI_INHERITANCE_UNSAFE_GETRESOURCE
+VA_FORMAT_STRING_EXTRA_ARGUMENTS_PASSED
+IT_NO_SUCH_ELEMENT
+NM_CLASS_NAMING_CONVENTION
+RC_REF_COMPARISON
+RC_REF_COMPARISON_BAD_PRACTICE_BOOLEAN
+DLS_DEAD_LOCAL_STORE_SHADOWS_FIELD
+HE_EQUALS_NO_HASHCODE
+NS_NON_SHORT_CIRCUIT
+NP_DEREFERENCE_OF_READLINE_VALUE
+NP_GUARANTEED_DEREF_ON_EXCEPTION_PATH
+EQ_DOESNT_OVERRIDE_EQUALS
+DM_STRING_VOID_CTOR
+DP_CREATE_CLASSLOADER_INSIDE_DO_PRIVILEGED
+BIT_SIGNED_CHECK
+ME_ENUM_FIELD_SETTER
+BC_EQUALS_METHOD_SHOULD_WORK_FOR_ALL_OBJECTS
+NS_DANGEROUS_NON_SHORT_CIRCUIT
+NP_EQUALS_SHOULD_HANDLE_NULL_ARGUMENT
+SR_NOT_CHECKED
+RR_NOT_CHECKED
+UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD
+VA_FORMAT_STRING_MISSING_ARGUMENT
+EC_BAD_ARRAY_COMPARE
+NP_NONNULL_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR
+DM_BOXED_PRIMITIVE_FOR_COMPARE
+NP_NULL_ON_SOME_PATH_MIGHT_BE_INFEASIBLE
+UMAC_UNCALLABLE_METHOD_OF_ANONYMOUS_CLASS
+UWF_NULL_FIELD
+CO_COMPARETO_INCORRECT_FLOATING
+NP_NULL_PARAM_DEREF_ALL_TARGETS_DANGEROUS
+NO_NOTIFY_NOT_NOTIFYALL
+SC_START_IN_CTOR
+RV_RETURN_VALUE_IGNORED_INFERRED
+UM_UNNECESSARY_MATH
+SA_FIELD_SELF_ASSIGNMENT
+BC_IMPOSSIBLE_CAST
+LI_LAZY_INIT_UPDATE_STATIC
+NP_TOSTRING_COULD_RETURN_NULL
+SIC_INNER_SHOULD_BE_STATIC_NEEDS_THIS
+AT_OPERATION_SEQUENCE_ON_CONCURRENT_ABSTRACTION
+EQ_UNUSUAL
+SE_NO_SUITABLE_CONSTRUCTOR
+UW_UNCOND_WAIT
+MF_CLASS_MASKS_FIELD
+FE_TEST_IF_EQUAL_TO_NOT_A_NUMBER
+IA_AMBIGUOUS_INVOCATION_OF_INHERITED_OR_OUTER_METHOD
+SE_BAD_FIELD_INNER_CLASS
+RV_NEGATING_RESULT_OF_COMPARETO
+ISC_INSTANTIATE_STATIC_CLASS
+HE_HASHCODE_USE_OBJECT_EQUALS
+DM_BOOLEAN_CTOR
+DMI_RANDOM_USED_ONLY_ONCE
+EQ_CHECK_FOR_OPERAND_NOT_COMPATIBLE_WITH_THIS
+DM_GC
+NM_SAME_SIMPLE_NAME_AS_SUPERCLASS
+EC_NULL_ARG
+EQ_SELF_USE_OBJECT
+RV_ABSOLUTE_VALUE_OF_RANDOM_INT
+SE_NO_SUITABLE_CONSTRUCTOR_FOR_EXTERNALIZATION
+MS_EXPOSE_REP
+SE_TRANSIENT_FIELD_NOT_RESTORED
+IM_AVERAGE_COMPUTATION_COULD_OVERFLOW
+NP_METHOD_PARAMETER_TIGHTENS_ANNOTATION
+NP_METHOD_RETURN_RELAXING_ANNOTATION
+UG_SYNC_SET_UNSYNC_GET
+NM_FIELD_NAMING_CONVENTION
+MS_OOI_PKGPROTECT
+UCF_USELESS_CONTROL_FLOW_NEXT_LINE
+VA_FORMAT_STRING_BAD_CONVERSION
+BX_BOXING_IMMEDIATELY_UNBOXED_TO_PERFORM_COERCION
+SA_FIELD_DOUBLE_ASSIGNMENT
+BC_BAD_CAST_TO_CONCRETE_COLLECTION
+SF_DEAD_STORE_DUE_TO_SWITCH_FALLTHROUGH
+MS_FINAL_PKGPROTECT
+DMI_COLLECTION_OF_URLS
+INT_BAD_COMPARISON_WITH_SIGNED_BYTE
+RV_CHECK_FOR_POSITIVE_INDEXOF
+RE_CANT_USE_FILE_SEPARATOR_AS_REGULAR_EXPRESSION
+RU_INVOKE_RUN
+BC_IMPOSSIBLE_DOWNCAST_OF_TOARRAY
+ICAST_BAD_SHIFT_AMOUNT
+ICAST_INT_CAST_TO_FLOAT_PASSED_TO_ROUND
+DM_BOXED_PRIMITIVE_TOSTRING
+UR_UNINIT_READ_CALLED_FROM_SUPER_CONSTRUCTOR
+WA_NOT_IN_LOOP
+CN_IDIOM
+DMI_BLOCKING_METHODS_ON_URL
+EC_UNRELATED_CLASS_AND_INTERFACE
+SWL_SLEEP_WITH_LOCK_HELD
+IM_BAD_CHECK_FOR_ODD
+RE_POSSIBLE_UNINTENDED_PATTERN
+INT_BAD_COMPARISON_WITH_NONNEGATIVE_VALUE
+ICAST_INT_CAST_TO_DOUBLE_PASSED_TO_CEIL
+EQ_OVERRIDING_EQUALS_NOT_SYMMETRIC
+LG_LOST_LOGGER_DUE_TO_WEAK_REFERENCE
+DLS_DEAD_LOCAL_STORE_IN_RETURN
+J2EE_STORE_OF_NON_SERIALIZABLE_OBJECT_INTO_SESSION
+NP_STORE_INTO_NONNULL_FIELD
+RANGE_ARRAY_INDEX
+IL_INFINITE_LOOP
+DC_DOUBLECHECK
+NN_NAKED_NOTIFY
+EC_UNRELATED_TYPES_USING_POINTER_EQUALITY
+SE_PRIVATE_READ_RESOLVE_NOT_INHERITED
+INT_VACUOUS_BIT_OPERATION
+DM_NEXTINT_VIA_NEXTDOUBLE
+VA_FORMAT_STRING_ILLEGAL
+DMI_INVOKING_HASHCODE_ON_ARRAY
+RV_DONT_JUST_NULL_CHECK_READLINE
+RE_BAD_SYNTAX_FOR_REGULAR_EXPRESSION
+SA_LOCAL_SELF_ASSIGNMENT_INSTEAD_OF_FIELD
+NM_VERY_CONFUSING
+MSF_MUTABLE_SERVLET_FIELD
+BC_IMPOSSIBLE_INSTANCEOF
+SA_LOCAL_SELF_COMPARISON
+SA_LOCAL_SELF_ASSIGNMENT
+IC_SUPERCLASS_USES_SUBCLASS_DURING_INITIALIZATION
+CNT_ROUGH_CONSTANT_VALUE
+SI_INSTANCE_BEFORE_FINALS_ASSIGNED
+DLS_DEAD_STORE_OF_CLASS_LITERAL
+RV_ABSOLUTE_VALUE_OF_HASHCODE
+NM_SAME_SIMPLE_NAME_AS_INTERFACE
+HE_HASHCODE_NO_EQUALS
+DM_NEW_FOR_GETCLASS
+SA_FIELD_SELF_COMPARISON
+NM_METHOD_CONSTRUCTOR_CONFUSION
+EQ_COMPARING_CLASS_NAMES
+UC_USELESS_CONDITION_TYPE
+RV_01_TO_INT
+SA_LOCAL_DOUBLE_ASSIGNMENT
+SQL_BAD_RESULTSET_ACCESS
+EQ_GETCLASS_AND_CLASS_CONSTANT
+BSHIFT_WRONG_ADD_PRIORITY
+HRS_REQUEST_PARAMETER_TO_HTTP_HEADER
+DMI_USING_REMOVEALL_TO_CLEAR_COLLECTION
+STCAL_STATIC_SIMPLE_DATE_FORMAT_INSTANCE
+FI_FINALIZER_NULLS_FIELDS
+ML_SYNC_ON_FIELD_TO_GUARD_CHANGING_THAT_FIELD
+JCIP_FIELD_ISNT_FINAL_IN_IMMUTABLE_CLASS
+CO_COMPARETO_RESULTS_MIN_VALUE
+IMSE_DONT_CATCH_IMSE
+QF_QUESTIONABLE_FOR_LOOP
+MWN_MISMATCHED_NOTIFY
+RV_RETURN_VALUE_OF_PUTIFABSENT_IGNORED
+DMI_NONSERIALIZABLE_OBJECT_WRITTEN
+BC_BAD_CAST_TO_ABSTRACT_COLLECTION
+SW_SWING_METHODS_INVOKED_IN_SWING_THREAD
+EC_ARRAY_AND_NONARRAY
+NP_NULL_INSTANCEOF
+MTIA_SUSPECT_SERVLET_INSTANCE_FIELD
+EQ_ALWAYS_FALSE
+INT_BAD_COMPARISON_WITH_INT_VALUE
+NP_OPTIONAL_RETURN_NULL
+BX_BOXING_IMMEDIATELY_UNBOXED
+VA_FORMAT_STRING_EXPECTED_MESSAGE_FORMAT_SUPPLIED
+BIT_IOR
+FI_MISSING_SUPER_CALL
+VO_VOLATILE_REFERENCE_TO_ARRAY
+SF_DEAD_STORE_DUE_TO_SWITCH_FALLTHROUGH_TO_THROW
+DMI_CONSTANT_DB_PASSWORD
+NP_IMMEDIATE_DEREFERENCE_OF_READLINE
+ML_SYNC_ON_UPDATED_FIELD
+HE_USE_OF_UNHASHABLE_CLASS
+FI_PUBLIC_SHOULD_BE_PROTECTED
+DMI_BIGDECIMAL_CONSTRUCTED_FROM_DOUBLE
+TQ_NEVER_VALUE_USED_WHERE_ALWAYS_REQUIRED
+XSS_REQUEST_PARAMETER_TO_SERVLET_WRITER
+NP_ALWAYS_NULL_EXCEPTION
+DM_INVALID_MIN_MAX
+NM_WRONG_PACKAGE
+MS_SHOULD_BE_REFACTORED_TO_BE_FINAL
+DC_PARTIALLY_CONSTRUCTED
+WA_AWAIT_NOT_IN_LOOP
+INT_VACUOUS_COMPARISON
+RV_CHECK_COMPARETO_FOR_SPECIFIC_RETURN_VALUE
+RCN_REDUNDANT_COMPARISON_OF_NULL_AND_NONNULL_VALUE
+DL_SYNCHRONIZATION_ON_SHARED_CONSTANT
+EQ_ALWAYS_TRUE
+DMI_EMPTY_DB_PASSWORD
+DMI_ENTRY_SETS_MAY_REUSE_ENTRY_OBJECTS
+WL_USING_GETCLASS_RATHER_THAN_CLASS_LITERAL
+FI_USELESS
+VA_FORMAT_STRING_BAD_CONVERSION_FROM_ARRAY
+SP_SPIN_ON_FIELD
+BOA_BADLY_OVERRIDDEN_ADAPTER
+MWN_MISMATCHED_WAIT
+NP_CLONE_COULD_RETURN_NULL
+CO_ABSTRACT_SELF
+DMI_COLLECTIONS_SHOULD_NOT_CONTAIN_THEMSELVES
+QBA_QUESTIONABLE_BOOLEAN_ASSIGNMENT
+IC_INIT_CIRCULARITY
+ICAST_INT_2_LONG_AS_INSTANT
+FI_EXPLICIT_INVOCATION
+ME_MUTABLE_ENUM_FIELD
+RCN_REDUNDANT_COMPARISON_TWO_NULL_VALUES
+HE_SIGNATURE_DECLARES_HASHING_OF_UNHASHABLE_CLASS
+RS_READOBJECT_SYNC
+SQL_BAD_PREPARED_STATEMENT_ACCESS
+VA_FORMAT_STRING_BAD_CONVERSION_TO_BOOLEAN
+EQ_ABSTRACT_SELF
+NP_CLOSING_NULL
+RV_REM_OF_HASHCODE
+PT_RELATIVE_PATH_TRAVERSAL
+TLW_TWO_LOCK_WAIT
+INT_BAD_REM_BY_1
+ICAST_QUESTIONABLE_UNSIGNED_RIGHT_SHIFT
+VA_PRIMITIVE_ARRAY_PASSED_TO_OBJECT_VARARG
+DM_USELESS_THREAD
+DMI_DOH
+IJU_ASSERT_METHOD_INVOKED_FROM_RUN_METHOD
+BIT_IOR_OF_SIGNED_BYTE
+DMI_THREAD_PASSED_WHERE_RUNNABLE_EXPECTED
+SA_LOCAL_SELF_COMPUTATION
+	This method performs a nonsensical computation of a local variable with another reference to the same variable (e.g., x&x or x-x). 
+	Because of the nature of the computation, this operation doesn't seem to make sense, and may indicate a typo or a logic error. Double check the computation.
+IM_MULTIPLYING_RESULT_OF_IREM
+	The code multiplies the result of an integer remaining by an integer constant. 
+	Be sure you don't have your operator precedence confused. For example i % 60 * 1000 is (i % 60) * 1000, not i % (60 * 1000).
+MS_MUTABLE_HASHTABLE
+	Field is a mutable Hashtable (MS_MUTABLE_HASHTABLE)
+	A final static field references a Hashtable and can be accessed by malicious code or by accident from another package. 
+	This code can freely modify the contents of the Hashtable.
\ No newline at end of file
diff --git a/logs/test1.txt b/logs/test1.txt
new file mode 100644
index 0000000..6f8a813
--- /dev/null
+++ b/logs/test1.txt
@@ -0,0 +1,4162 @@
+fiji-TrackMate3_6001d1_c64900src/test/java/net/trackmate/graph/algorithm/TreeOutputterExample.java
+julianhyde-optiq_f7c2c5_af5f76src/test/java/net/hydromatic/optiq/test/JdbcTest.java
+rinde-RinSim_37c514_cc4617core/src/test/java/com/github/rinde/rinsim/core/model/time/TimeModelTest.java
+objectos-way_31083a_30eea0src/test/java/br/com/objectos/way/gdrive/GDirectoryTest.java
+objectos-way_31083a_30eea0src/test/java/br/com/objectos/way/gdrive/GDirectoryTest.java
+objectos-way_31083a_30eea0src/test/java/br/com/objectos/way/gdrive/GDirectoryTest.java
+apache-hadoop-common_34ddfc_d8f5besrc/test/java/org/apache/hadoop/hbase/regionserver/wal/TestWALReplay.java
+apache-hadoop-common_34ddfc_d8f5besrc/test/java/org/apache/hadoop/hbase/regionserver/wal/TestWALReplay.java
+apache-hadoop-common_34ddfc_d8f5besrc/test/java/org/apache/hadoop/hbase/regionserver/wal/TestWALReplay.java
+forcedotcom-phoenix_290d62_ed5d41src/test/java/com/salesforce/phoenix/end2end/DefaultParallelIteratorsRegionSplitterTest.java
+forcedotcom-phoenix_290d62_ed5d41src/test/java/com/salesforce/phoenix/end2end/DefaultParallelIteratorsRegionSplitterTest.java
+forcedotcom-phoenix_290d62_ed5d41src/test/java/com/salesforce/phoenix/end2end/DefaultParallelIteratorsRegionSplitterTest.java
+aeshell-aesh_73046a_e66570src/test/java/org/jboss/aesh/console/alias/AliasManagerTest.java
+aeshell-aesh_73046a_e66570src/test/java/org/jboss/aesh/console/alias/AliasManagerTest.java
+aeshell-aesh_73046a_e66570src/test/java/org/jboss/aesh/console/alias/AliasManagerTest.java
+forcedotcom-phoenix_5e4717_0a0ba3src/test/java/com/salesforce/phoenix/arithmetic/ArithmeticOperationTest.java
+forcedotcom-phoenix_5e4717_0a0ba3src/test/java/com/salesforce/phoenix/arithmetic/ArithmeticOperationTest.java
+forcedotcom-phoenix_5e4717_0a0ba3src/test/java/com/salesforce/phoenix/arithmetic/ArithmeticOperationTest.java
+objectos-way_b45e6d_544d03src/test/java/br/com/objectos/way/gdrive/GDirectoryTest.java
+objectos-way_b45e6d_544d03src/test/java/br/com/objectos/way/gdrive/GDirectoryTest.java
+graphhopper-graphhopper_a80f1c_6a62c4core/src/test/java/com/graphhopper/GraphHopperTest.java
+graphhopper-graphhopper_a80f1c_6a62c4core/src/test/java/com/graphhopper/GraphHopperTest.java
+SciGraph-SciGraph_66557c_195172SciGraph-core/src/test/java/edu/sdsc/scigraph/neo4j/Neo4jIndexingTest.java
+SciGraph-SciGraph_66557c_195172SciGraph-core/src/test/java/edu/sdsc/scigraph/neo4j/Neo4jIndexingTest.java
+SciGraph-SciGraph_66557c_195172SciGraph-core/src/test/java/edu/sdsc/scigraph/neo4j/Neo4jIndexingTest.java
+SciGraph-SciGraph_66557c_195172SciGraph-core/src/test/java/edu/sdsc/scigraph/neo4j/Neo4jIndexingTest.java
+locationtech-spatial4j_b0910c_fc5cb3src/test/java/com/spatial4j/core/shape/JtsGeometryTest.java
+apache-commons-codec_0626e9_608a7dsrc/test/org/apache/commons/codec/language/SoundexTest.java
+notthebees-languagegames_3eaefd_a4ef34src/test/java/paddy/conceptual/agent/interpretation/TestInterpretationImpl.java
+google-guava_f001be_4a6844guava-tests/test/com/google/common/collect/ListsTest.java
+google-guava_f001be_4a6844guava-tests/test/com/google/common/collect/ListsTest.java
+google-guava_f001be_4a6844guava-tests/test/com/google/common/collect/ListsTest.java
+google-guava_f001be_4a6844guava-tests/test/com/google/common/collect/ListsTest.java
+optimizationBenchmarking-optimizationBenchmarking_c955e9_2afc34src/test/java/examples/org/optimizationBenchmarking/utils/io/xml/performance/exampleDoc/ExampleDocument.java
+optimizationBenchmarking-optimizationBenchmarking_c955e9_2afc34src/test/java/examples/org/optimizationBenchmarking/utils/io/xml/performance/exampleDoc/ExampleDocument.java
+optimizationBenchmarking-optimizationBenchmarking_c955e9_2afc34src/test/java/examples/org/optimizationBenchmarking/utils/io/xml/performance/exampleDoc/ExampleDocument.java
+forcedotcom-phoenix_f6e6f0_acd57dsrc/test/java/com/salesforce/phoenix/end2end/QueryExecTest.java
+jenkinsci-acceptance-test-harness_fbdc2c_b9bb90src/main/java/org/jenkinsci/test/acceptance/machine/JcloudsMachine.java
+jenkinsci-acceptance-test-harness_fbdc2c_b9bb90src/main/java/org/jenkinsci/test/acceptance/machine/JcloudsMachine.java
+apache-commons-lang_5cf426_c96a70src/test/java/org/apache/commons/lang3/builder/HashCodeBuilderTest.java
+apache-commons-lang_5cf426_c96a70src/test/java/org/apache/commons/lang3/builder/HashCodeBuilderTest.java
+apache-commons-lang_5cf426_c96a70src/test/java/org/apache/commons/lang3/builder/HashCodeBuilderTest.java
+jenkinsci-acceptance-test-harness_a330b0_130405src/main/java/org/jenkinsci/test/acceptance/po/BuildStep.java
+rinde-RinSim_bf0c05_d75869core/src/test/java/com/github/rinde/rinsim/core/model/road/CollisionGraphRoadModelTest.java
+neo4j-neo4j-ogm_21ff60_cd5dd0src/test/java/org/neo4j/ogm/integration/ingredients/IngredientsIntegrationTest.java
+forcedotcom-phoenix_03e39f_35b11asrc/test/java/com/salesforce/phoenix/end2end/DynamicFamilyTest.java
+forcedotcom-phoenix_03e39f_35b11asrc/test/java/com/salesforce/phoenix/end2end/DynamicFamilyTest.java
+jenkinsci-acceptance-test-harness_81d869_f7fd6esrc/main/java/org/jenkinsci/test/acceptance/machine/JcloudsMachine.java
+jenkinsci-acceptance-test-harness_81d869_f7fd6esrc/main/java/org/jenkinsci/test/acceptance/machine/JcloudsMachine.java
+forcedotcom-phoenix_d0fb16_290d62src/test/java/com/salesforce/phoenix/end2end/QueryDatabaseMetaDataTest.java
+objectos-way_27a598_436bd7way-base/src/test/java/br/com/objectos/way/base/util/BusinessDaysTest.java
+objectos-way_27a598_436bd7way-base/src/test/java/br/com/objectos/way/base/util/BusinessDaysTest.java
+objectos-way_27a598_436bd7way-base/src/test/java/br/com/objectos/way/base/util/BusinessDaysTest.java
+notthebees-languagegames_b0ce66_a8267asrc/test/java/paddy/conceptual/TestArgmaxAssertionModel.java
+imglib-imglib2_026267_bf06d4core/src/test/java/net/imglib2/img/cell/CellContainerTest.java
+LiveRamp-hank_90e782_f4d4e3hank-core/src/main/java/com/liveramp/hank/test/ZkTestCase.java
+aaron-santos-lanterna_3b2e9d_58aa13src/test/java/com/googlecode/lanterna/test/gui/MultilevelCloseWindow.java
+jenkinsci-acceptance-test-harness_629e77_e2c9d9src/main/java/org/jenkinsci/test/acceptance/po/Job.java
+forcedotcom-phoenix_7f2b08_df0a4dsrc/test/java/com/salesforce/phoenix/end2end/CreateTableTest.java
+Activiti-Activiti_724655_206c08modules/activiti-engine/src/main/java/org/activiti/engine/impl/test/TestHelper.java
+forcedotcom-phoenix_6e9b6a_e75e70src/test/java/com/salesforce/phoenix/end2end/DefaultParallelIteratorsRegionSplitterTest.java
+forcedotcom-phoenix_6e9b6a_e75e70src/test/java/com/salesforce/phoenix/end2end/DefaultParallelIteratorsRegionSplitterTest.java
+imglib-imglib2_eeab2b_1fb58ccore/src/test/java/net/imglib2/BinningTest.java
+basho-riak-java-client_7ae2ce_49ec58src/test/java/com/basho/riak/client/operations/FetchObjectTest.java
+Gigaspaces-mongo-datasource_53f2b9_3fa466src/test/java/com/gigaspaces/persistency/qa/utest/metadata/DocumentSpacePojoTest.java
+eXistence-TeeTime_1f7802_ee2195src/main/java/util/test/PerformanceCheckProfileRepository.java
+locationtech-spatial4j_4910c7_fcf408src/test/java/com/spatial4j/core/io/GeneralReadWriteShapeTest.java
+locationtech-spatial4j_4910c7_fcf408src/test/java/com/spatial4j/core/io/GeneralReadWriteShapeTest.java
+neo4j-neo4j-ogm_21ff60_cd5dd0src/test/java/org/neo4j/ogm/integration/pets/PetIntegrationTest.java
+apache-commons-lang_35096b_13d7cesrc/test/java/org/apache/commons/lang3/text/WordUtilsTest.java
+checkstyle-checkstyle_3e0159_4d0c11src/test/java/com/puppycrawl/tools/checkstyle/checks/UniquePropertiesCheckTest.java
+neo4j-neo4j-ogm_21ff60_cd5dd0src/test/java/org/neo4j/ogm/integration/friendships/FriendsInLongTransactionTest.java
+imglib-imglib2_5dd86e_062cfbcore/src/test/java/net/imglib2/img/cell/CellContainerTest.java
+forcedotcom-phoenix_33f525_997898src/test/java/com/salesforce/phoenix/compile/QueryCompileTest.java
+forcedotcom-phoenix_33f525_997898src/test/java/com/salesforce/phoenix/compile/QueryCompileTest.java
+forcedotcom-phoenix_33f525_997898src/test/java/com/salesforce/phoenix/compile/QueryCompileTest.java
+forcedotcom-phoenix_33f525_997898src/test/java/com/salesforce/phoenix/compile/QueryCompileTest.java
+imglib-imglib2_755f4e_887d12ops/src/test/java/net/imglib2/ops/pointset/PointSetRegionOfInterestTest.java
+graphhopper-graphhopper_a04820_335fdccore/src/test/java/com/graphhopper/storage/SimpleFSLockFactoryTest.java
+forcedotcom-phoenix_7f2b08_df0a4dsrc/test/java/com/salesforce/phoenix/compile/QueryCompileTest.java
+forcedotcom-phoenix_7f2b08_df0a4dsrc/test/java/com/salesforce/phoenix/compile/QueryCompileTest.java
+aeshell-aesh_fc57c5_5edbfcsrc/test/java/org/jboss/aesh/console/ConsoleTest.java
+aeshell-aesh_fc57c5_5edbfcsrc/test/java/org/jboss/aesh/console/ConsoleTest.java
+aeshell-aesh_fc57c5_5edbfcsrc/test/java/org/jboss/aesh/console/ConsoleTest.java
+imglib-imglib2_15fec0_2e6fb7core/src/test/java/tests/JUnitTestBase.java
+protegeproject-swrlapi_8effe9_73b54csrc/main/java/org/swrlapi/test/SWRLAPIRegressionTester.java
+objectos-way_9a562a_69238fsrc/test/java/br/com/objectos/way/io/TableReaderTest.java
+objectos-way_9a562a_69238fsrc/test/java/br/com/objectos/way/io/TableReaderTest.java
+imglib-imglib2_15fec0_2e6fb7core/src/test/java/net/imglib2/sampler/special/TestConstantRandomAccessible.java
+basho-riak-java-client_4134e5_3bf8cbsrc/test/java/com/basho/riak/client/convert/UsermetaConverterTest.java
+basho-riak-java-client_4134e5_3bf8cbsrc/test/java/com/basho/riak/client/convert/UsermetaConverterTest.java
+Activiti-Activiti_241ed9_f8eb3amodules/activiti-engine/src/main/java/org/activiti/engine/impl/test/PluggableActivitiTestCase.java
+forcedotcom-phoenix_f15fa2_7dadb5src/test/java/com/salesforce/phoenix/end2end/RowValueConstructorTest.java
+forcedotcom-phoenix_f15fa2_7dadb5src/test/java/com/salesforce/phoenix/end2end/RowValueConstructorTest.java
+forcedotcom-phoenix_f15fa2_7dadb5src/test/java/com/salesforce/phoenix/end2end/RowValueConstructorTest.java
+notthebees-languagegames_f66b4b_711793src/test/java/paddy/conceptual/TestInterpretationImpl.java
+notthebees-languagegames_f66b4b_711793src/test/java/paddy/conceptual/TestInterpretationImpl.java
+forcedotcom-phoenix_67bf8c_837310src/test/java/com/salesforce/phoenix/compile/QueryCompileTest.java
+aeshell-aesh_2633a1_299b56src/test/java/org/jboss/aesh/console/aesh/AeshCommandValidatorTest.java
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diff --git a/logs/test2.txt b/logs/test2.txt
new file mode 100644
index 0000000..fb01a9f
--- /dev/null
+++ b/logs/test2.txt
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diff --git a/logs/test3.txt b/logs/test3.txt
new file mode 100644
index 0000000..2f0ede3
--- /dev/null
+++ b/logs/test3.txt
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+aeshell-aesh_b07d65_7f7fb8src/main/java/org/jboss/aesh/terminal/TestTerminal.java
+mkovatsc-Californium_b9e772_e3ce84cf-plugtest-server/src/main/java/ch/ethz/inf/vs/californium/examples/plugtest/ObserveNon.java
+sdl-Testy_ce3277_897be8src/main/java/com/extjs/selenium/grid/GridPanel.java
+PIH-mirebalais-smoke-tests_13aea3_9284a5src/main/java/org/openmrs/module/mirebalais/smoke/pageobjects/IdentificationSteps.java
+PIH-mirebalais-smoke-tests_13aea3_9284a5src/main/java/org/openmrs/module/mirebalais/smoke/pageobjects/IdentificationSteps.java
+mkovatsc-Californium_a50135_1ec0f5cf-plugtest-server/src/main/java/ch/ethz/inf/vs/californium/examples/plugtest/Observe.java
+dakusui-jcunit_2e61d5_5247afsrc/main/java/com/github/dakusui/jcunit/generators/CartesianTestArrayGenerator.java
+dakusui-jcunit_2e61d5_5247afsrc/main/java/com/github/dakusui/jcunit/generators/CartesianTestArrayGenerator.java
diff --git a/src/main/java/edu/lu/uni/serval/FixPatternParser/Tokenizer.java b/src/main/java/edu/lu/uni/serval/FixPatternParser/Tokenizer.java
index daa978a..b9a9030 100644
--- a/src/main/java/edu/lu/uni/serval/FixPatternParser/Tokenizer.java
+++ b/src/main/java/edu/lu/uni/serval/FixPatternParser/Tokenizer.java
@@ -28,6 +28,8 @@ public class Tokenizer {
 				tokens += astNodeType + " arrayInitializer ";
 			} else if ("LambdaExpression".equals(astNodeType)) {
 				tokens += astNodeType + " lambda ";
+			} else if ("NumberLiteral".equals(astNodeType)) {
+				tokens += astNodeType + " numberLiteral ";
 			} else {
 				tokens += astNodeType + " " + simpleTree.getLabel() + " ";
 			}
diff --git a/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/FieldViolation.java b/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/FieldViolation.java
new file mode 100644
index 0000000..a011853
--- /dev/null
+++ b/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/FieldViolation.java
@@ -0,0 +1,121 @@
+package edu.lu.uni.serval.FixPatternParser.violations;
+
+public enum FieldViolation {
+	       UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR,
+	       ST_WRITE_TO_STATIC_FROM_INSTANCE_METHOD,
+	       LI_LAZY_INIT_STATIC,
+	URF_UNREAD_FIELD,
+	MS_SHOULD_BE_FINAL,
+	URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD,
+	UWF_UNWRITTEN_FIELD,
+	MS_PKGPROTECT,
+	SS_SHOULD_BE_STATIC,
+	NP_UNWRITTEN_FIELD,
+	UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD,
+	SE_BAD_FIELD,
+	UUF_UNUSED_FIELD,
+	SE_BAD_FIELD_STORE,
+	MS_MUTABLE_ARRAY,
+	NP_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD,
+}
+
+enum ClassViolation{
+	SIC_INNER_SHOULD_BE_STATIC_ANON, //inner class.  ClassInstanceCreation by overriding some methods.
+	SIC_INNER_SHOULD_BE_STATIC,
+	RI_REDUNDANT_INTERFACES,
+	SE_COMPARATOR_SHOULD_BE_SERIALIZABLE,
+	
+	SE_NO_SERIALVERSIONID,
+		CI_CONFUSED_INHERITANCE,
+		SE_INNER_CLASS,
+
+		NM_CLASS_NOT_EXCEPTION,
+}
+
+enum MethodViolation {
+	NM_METHOD_NAMING_CONVENTION,
+	UPM_UNCALLED_PRIVATE_METHOD,
+		DE_MIGHT_IGNORE,
+	
+		NM_CONFUSING,
+		CN_IMPLEMENTS_CLONE_BUT_NOT_CLONEABLE,
+		UC_USELESS_VOID_METHOD,
+}
+
+enum StmtViolation {
+	DLS_DEAD_LOCAL_STORE, //Assignment statement. false positives may be high.
+	//This instruction assigns a value to a local variable, but the value is not read or used in any subsequent instruction.
+	
+	DM_BOXED_PRIMITIVE_FOR_PARSING,
+	
+	DM_CONVERT_CASE,
+	DM_DEFAULT_ENCODING,
+	IS2_INCONSISTENT_SYNC,
+	
+	NP_GUARANTEED_DEREF,
+	SIO_SUPERFLUOUS_INSTANCEOF,
+	NP_BOOLEAN_RETURN_NULL,
+	SF_SWITCH_FALLTHROUGH,
+	DP_DO_INSIDE_DO_PRIVILEGED,
+	DMI_INVOKING_TOSTRING_ON_ARRAY,
+	NP_NONNULL_PARAM_VIOLATION,
+	CN_IDIOM_NO_SUPER_CALL,
+	UL_UNRELEASED_LOCK_EXCEPTION_PATH,
+	RC_REF_COMPARISON_BAD_PRACTICE,
+	NP_ALWAYS_NULL,
+	NP_NULL_PARAM_DEREF,
+	GC_UNRELATED_TYPES,
+	DLS_DEAD_LOCAL_STORE_OF_NULL,
+	RpC_REPEATED_CONDITIONAL_TEST,
+	ODR_OPEN_DATABASE_RESOURCE_EXCEPTION_PATH,
+	DB_DUPLICATE_SWITCH_CLAUSES,
+	RV_RETURN_VALUE_IGNORED,
+	ES_COMPARING_PARAMETER_STRING_WITH_EQ,
+	RCN_REDUNDANT_NULLCHECK_OF_NULL_VALUE,
+	ICAST_IDIV_CAST_TO_DOUBLE,
+	BC_VACUOUS_INSTANCEOF,
+	EC_UNRELATED_TYPES,
+	ICAST_INTEGER_MULTIPLY_CAST_TO_LONG,
+	DM_STRING_TOSTRING,
+	DMI_HARDCODED_ABSOLUTE_FILENAME,
+	MS_MUTABLE_COLLECTION_PKGPROTECT,
+	NP_NULL_ON_SOME_PATH_EXCEPTION,
+	SQL_NONCONSTANT_STRING_PASSED_TO_EXECUTE,
+	EQ_COMPARETO_USE_OBJECT_EQUALS,
+	BX_UNBOXING_IMMEDIATELY_REBOXED,
+	HE_EQUALS_USE_HASHCODE,
+	DM_EXIT,
+	FE_FLOATING_POINT_EQUALITY,
+	RCN_REDUNDANT_NULLCHECK_OF_NONNULL_VALUE,
+	BC_UNCONFIRMED_CAST,
+	REC_CATCH_EXCEPTION,
+	BC_UNCONFIRMED_CAST_OF_RETURN_VALUE,
+	VA_FORMAT_STRING_USES_NEWLINE,
+	RV_RETURN_VALUE_IGNORED_BAD_PRACTICE,
+	EI_EXPOSE_REP2,
+	WMI_WRONG_MAP_ITERATOR,
+	EI_EXPOSE_REP,
+	NP_LOAD_OF_KNOWN_NULL_VALUE,
+	DM_NUMBER_CTOR,
+	SBSC_USE_STRINGBUFFER_CONCATENATION,
+	OS_OPEN_STREAM_EXCEPTION_PATH,
+	NP_NONNULL_RETURN_VIOLATION, 
+	SF_SWITCH_NO_DEFAULT,
+	RV_RETURN_VALUE_IGNORED_NO_SIDE_EFFECT,
+	ODR_OPEN_DATABASE_RESOURCE,
+	PZLA_PREFER_ZERO_LENGTH_ARRAYS,
+	NP_NULL_ON_SOME_PATH_FROM_RETURN_VALUE,
+	UCF_USELESS_CONTROL_FLOW,
+	UC_USELESS_CONDITION,
+	NP_NULL_ON_SOME_PATH,
+	DM_FP_NUMBER_CTOR,
+	SQL_PREPARED_STATEMENT_GENERATED_FROM_NONCONSTANT_STRING,
+	OBL_UNSATISFIED_OBLIGATION_EXCEPTION_EDGE,
+	ES_COMPARING_STRINGS_WITH_EQ,
+	OS_OPEN_STREAM,
+	RCN_REDUNDANT_NULLCHECK_WOULD_HAVE_BEEN_A_NPE,
+	NP_PARAMETER_MUST_BE_NONNULL_BUT_MARKED_AS_NULLABLE,
+	
+	UC_USELESS_OBJECT,
+	OBL_UNSATISFIED_OBLIGATION,
+}
diff --git a/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/FixedViolationHunkParser.java b/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/FixedViolationHunkParser.java
index a6b759a..ad3260a 100644
--- a/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/FixedViolationHunkParser.java
+++ b/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/FixedViolationHunkParser.java
@@ -7,13 +7,12 @@ import java.io.StringReader;
 import java.util.ArrayList;
 import java.util.List;
 
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
-
 import com.github.gumtreediff.tree.ITree;
 
 import edu.lu.uni.serval.FixPatternParser.Tokenizer;
 import edu.lu.uni.serval.config.Configuration;
+import edu.lu.uni.serval.diffentry.DiffEntryHunk;
+import edu.lu.uni.serval.diffentry.DiffEntryReader;
 import edu.lu.uni.serval.gumtree.GumTreeGenerator;
 import edu.lu.uni.serval.gumtree.GumTreeGenerator.GumTreeType;
 import edu.lu.uni.serval.gumtree.regroup.HierarchicalActionSet;
@@ -29,8 +28,8 @@ import edu.lu.uni.serval.gumtree.regroup.SimplifyTree;
  */
 public class FixedViolationHunkParser extends FixedViolationParser {
 	
-	@SuppressWarnings("unused")
-	private static Logger log = LoggerFactory.getLogger(FixedViolationHunkParser.class);
+	private static final int THRESHOLD_LINE = 3;
+	
 	public String testingInfo = "";
 	
 	public int nullMappingGumTreeResult = 0;
@@ -38,6 +37,7 @@ public class FixedViolationHunkParser extends FixedViolationParser {
 	public int largeHunk = 0;
 	public int nullSourceCode = 0;
 	public int nullMatchedDiffEntry = 0;
+	public int testInfos = 0;
 	
 	public FixedViolationHunkParser() {
 	}
@@ -48,66 +48,30 @@ public class FixedViolationHunkParser extends FixedViolationParser {
 	
 	@Override
 	public void parseFixPatterns(File prevFile, File revFile, File diffentryFile) {
+		List<Violation> allViolations = readViolations(prevFile, revFile);
 		// GumTree results 
-		// TODO remove the modification of variable names or not? FIXME
-		List<HierarchicalActionSet> actionSets = parseChangedSourceCodeWithGumTree2(prevFile, revFile); // only remove non-statement source code, eg. method declaration 
-		List<Violation> violations = readViolations(revFile.getName());
+		List<HierarchicalActionSet> actionSets = parseChangedSourceCodeWithGumTree2(prevFile, revFile); 
 		if (this.resultType != 0) {
 			String type = "";
-			switch (this.resultType) {
-			case 1:
+			if (this.resultType == 1) {
 				type = "#NullGumTreeResult:";
-				break;
-			case 2:
+			} else if (this.resultType == 2) {
 				type = "#NoSourceCodeChange:";
-				break;
-			case 3:
+			} else if (this.resultType == 3) {
 				type = "#NoStatementChange:";
-				break;
 			}
-			for (Violation v : violations) {
-				System.err.println(type + revFile.getName().replace("#", "/") + ":" + v.getStartLineNum() + ":" + v.getEndLineNum() + ":" + v.getAlarmType());				
+			for (Violation v : allViolations) {
+				System.err.println(type + revFile.getName() + ":" + v.getStartLineNum() + ":" + v.getEndLineNum() + ":" + v.getViolationType());				
 			}
-			return;
 		} else {
-			if (violations.size() == 0) {
-				this.resultType = 4;
-				return;
-			}
-//			List<DiffEntryHunk> diffentryHunks1 = new DiffEntryReader().readHunks2(diffentryFile);
-//			// Select hunks by positions of violations.
-//			for (Violation violation : violations) {
-//				int violationStartLineNum = violation.getStartLineNum();
-//				int violationEndLineNum = violation.getEndLineNum();
-//				for (int index = 0, hunkListSize = diffentryHunks1.size(); index < hunkListSize; index ++) {
-//					DiffEntryHunk hunk = diffentryHunks1.get(index);
-//					int startLine = hunk.getBugLineStartNum();
-//					int range = hunk.getBugRange();
-//					if (violationStartLineNum > startLine + range - 1) continue;
-//					if (violationEndLineNum < startLine) break;
-//					
-//					if (violation.getBugStartLineNum() == 0) {
-//						violation.setBugStartLineNum(startLine);
-//						violation.setFixStartLineNum(hunk.getFixLineStartNum());
-//					}
-//					violation.setBugEndLineNum(startLine + range - 1);
-//					violation.setFixEndLineNum(hunk.getFixLineStartNum() + hunk.getFixRange() - 1);
-//					violation.getHunks().add(hunk);
-//				}
-//				if (violation.getBugStartLineNum() == 0 && violation.getBugEndLineNum() == 0) {
-//					// This fixed violation cannot be matched with a DiffEntry, it is difficult to identify related source code change for it.
-//					nullMatchedDiffEntry ++;
-//					log.warn("#Null-DiffEntry: " + revFile.getName().replace("#", "/") + "  :  " +violation.getStartLineNum() + " : " + 
-//							violation.getBugEndLineNum() + " : " + violation.getAlarmType());
-//				}
-//			}
+			List<DiffEntryHunk> diffentryHunks = new DiffEntryReader().readHunks2(diffentryFile);
+			// Identify DiffEntry hunks by positions of violations.
+			List<Violation> violations = identifyFixRangeHeuristically(allViolations, diffentryHunks, revFile);
 			
 			//Filter out the modify actions, which are not in the DiffEntry hunks.
 			HunkActionFilter hunkFilter = new HunkActionFilter();
 			List<Violation> selectedViolations = hunkFilter.filterActionsByModifiedRange2(violations, actionSets, revFile, prevFile);
-			
-			violations.removeAll(selectedViolations);
-			this.nullMappingGumTreeResult += violations.size();
+			this.nullMappingGumTreeResult += violations.size() - selectedViolations.size();
 			
 			for (Violation violation : selectedViolations) {
 				List<HierarchicalActionSet> hunkActionSets = violation.getActionSets();
@@ -193,15 +157,16 @@ public class FixedViolationHunkParser extends FixedViolationParser {
 					}
 				}
 				
-				if (fixStartLine == 0) {
+				if (fixStartLine == 0 && bugStartLine != 0) {
 					// pure delete actions.
 					this.pureDeletions ++;
-					System.err.println("#PureDeletion:" + revFile.getName().replace("#", "/") + ":" + violation.getStartLineNum() 
-					+ ":" + violation.getEndLineNum() + ":" + violation.getAlarmType());
-//					continue;
+					System.err.println("#PureDeletion:" + revFile.getName() + ":" + violation.getStartLineNum() 
+										+ ":" + violation.getEndLineNum() + ":" + violation.getViolationType());
+					// get the exact buggy code by violation's position. TODO later
 				}
 				
 				for (HierarchicalActionSet hunkActionSet : hunkActionSets) {
+					// TODO simplify buggy tree with buggy code.
 					SimplifyTree abstractIdentifier = new SimplifyTree();
 					abstractIdentifier.abstractTree(hunkActionSet, bugEndPosition);
 					SimpleTree simpleT = hunkActionSet.getSimpleTree();
@@ -212,19 +177,17 @@ public class FixedViolationHunkParser extends FixedViolationParser {
 				}
 				
 //				if (children.size() == 0) continue;
-				boolean isInsert = false;
+				boolean isPureInsert = false;
 				if (bugStartLine == 0) {
 					bugStartLine = violation.getStartLineNum();
 					bugEndLine = violation.getEndLineNum();
-					isInsert = true;
+					isPureInsert = true;
 //					continue;
 				}
 				if (bugEndLine - bugStartLine > Configuration.HUNK_SIZE || fixEndLine - fixStartLine > Configuration.HUNK_SIZE) {
-					if (fixStartLine != 0) {
-						this.largeHunk ++;
-						System.err.println("#LargeHunk:" + revFile.getName().replace("#", "/") + ":" + violation.getStartLineNum() 
-						+ ":" + violation.getEndLineNum() + ":" + violation.getAlarmType());
-					}
+					this.largeHunk ++;
+					System.err.println("#LargeHunk:" + revFile.getName() + ":" + violation.getStartLineNum() 
+						+ ":" + violation.getEndLineNum() + ":" + violation.getViolationType());
 					continue;
 				}
 
@@ -232,13 +195,11 @@ public class FixedViolationHunkParser extends FixedViolationParser {
 				simpleTree.setParent(null);
 				
 				// Source Code of patches.
-				String patchSourceCode = getPatchSourceCode(prevFile, revFile, bugStartLine, bugEndLine, fixStartLine, fixEndLine, isInsert);
+				String patchSourceCode = getPatchSourceCode(prevFile, revFile, bugStartLine, bugEndLine, fixStartLine, fixEndLine, isPureInsert);
 				if ("".equals(patchSourceCode)) {
-					if (fixStartLine != 0) {
-						this.nullSourceCode ++;
-						System.err.println("#NullSourceCode:" + revFile.getName().replace("#", "/") + ":" + violation.getStartLineNum() 
-						+ ":" + violation.getEndLineNum() + ":" + violation.getAlarmType());
-					}
+					this.nullSourceCode ++;
+					System.err.println("#NullSourceCode:" + revFile.getName() + ":" + violation.getStartLineNum() 
+						+ ":" + violation.getEndLineNum() + ":" + violation.getViolationType());
 					continue;
 				}
 				
@@ -257,23 +218,24 @@ public class FixedViolationHunkParser extends FixedViolationParser {
 //					this.nullMappingGumTreeResult ++;
 //					continue;
 //				}
-				String alarmType = violation.getAlarmType();
+				String alarmType = violation.getViolationType();
 				
 //				String patchPosition = "\n" + revFile.getName() + "Position: " + violation.getStartLineNum() + " --> "  + violation.getEndLineNum() + "\n@@ -" + bugStartLine + ", " + bugEndLine + " +" + fixStartLine + ", " + fixEndLine + "@@\n";
 //				String patchPosition = "\n" + "Position: " + violation.getStartLineNum() + " --> "  + violation.getEndLineNum() + "\n@@ -" + bugStartLine + ", " + bugEndLine + " +" + fixStartLine + ", " + fixEndLine + "@@\n";
 //				String info = Configuration.PATCH_SIGNAL + "\nAlarm Type :" + violation.getAlarmType() + "\n" + patchPosition + patchSourceCode + "\nAST Diff###:\n" + getAstEditScripts(hunkActionSets, bugEndPosition, fixEndPosition) + "\n";
 				String patchPosition = "\n" + "Position: " + violation.getStartLineNum() + " --> "  + violation.getEndLineNum() + "\n@@ -" + bugStartLine + ", " + bugEndLine + " +" + fixStartLine + ", " + fixEndLine + "@@\n";
-				String info = Configuration.PATCH_SIGNAL + "\nAlarm Type :" + violation.getAlarmType() + "\n" + patchSourceCode + "\n" + patchPosition + revFile.getName() + "\n";
+				String info = Configuration.PATCH_SIGNAL + "\nAlarm Type :" + violation.getViolationType() + "\n" + patchSourceCode + "\n" + patchPosition + revFile.getName() + "\n";
 				if (noUpdate(editScriptTokens)) {
 					
 					if (!"SE_NO_SERIALVERSIONID".equals(alarmType)) {
 						if (containsFiledDeclaration(hunkActionSets)) {
 //							this.nullMappingGumTreeResult ++; //TODO
-							if (fixStartLine != 0) {
-								this.testingInfo += info + revFile.getName() + "\n";
-								this.testingInfo += "#TestingInfo: " + revFile.getName().replace("#", "/") + ":" + violation.getStartLineNum() 
-								+ ":" + violation.getEndLineNum() + ":" + violation.getAlarmType();
-							}
+							this.testingInfo += info + revFile.getName() + "\n";
+							this.testingInfo += "#TestingInfo: " + revFile.getName() + ":" + violation.getStartLineNum() 
+								+ ":" + violation.getEndLineNum() + ":" + violation.getViolationType();
+							System.err.println("#TestingInfo:" + revFile.getName() + ":" + violation.getStartLineNum() 
+								+ ":" + violation.getEndLineNum() + ":" + violation.getViolationType());
+							this.testInfos ++;
 							continue;
 						}
 					}
@@ -292,11 +254,12 @@ public class FixedViolationHunkParser extends FixedViolationParser {
 						
 					} else {
 //						this.nullMappingGumTreeResult ++; // TODO
-						if (fixStartLine != 0) {
-							this.testingInfo += info + revFile.getName() + "\n";
-							this.testingInfo += "#TestingInfo: " + revFile.getName().replace("#", "/") + ":" + violation.getStartLineNum() 
-							+ ":" + violation.getEndLineNum() + ":" + violation.getAlarmType();
-						}
+						this.testingInfo += info + revFile.getName() + "\n";
+						this.testingInfo += "#TestingInfo: " + revFile.getName() + ":" + violation.getStartLineNum() 	
+							+ ":" + violation.getEndLineNum() + ":" + violation.getViolationType();
+						System.err.println("#TestingInfo:" + revFile.getName() + ":" + violation.getStartLineNum() 
+							+ ":" + violation.getEndLineNum() + ":" + violation.getViolationType());
+						this.testInfos ++;
 						continue;
 					}
 				}
@@ -304,7 +267,7 @@ public class FixedViolationHunkParser extends FixedViolationParser {
 				this.patchesSourceCode += info;
 				this.sizes += size + "\n";
 				this.astEditScripts += astEditScripts + "\n";
-				this.alarmTypes += alarmType + "\n";
+				this.violationTypes += alarmType + "\n";
 //				this.buggyTrees += Configuration.BUGGY_TREE_TOKEN + "\n" + simpleTree.toString() + "\n";
 				String tokens = Tokenizer.getTokensDeepFirst(simpleTree).trim();
 				if ("Block Block".equals(tokens)) {
@@ -318,6 +281,149 @@ public class FixedViolationHunkParser extends FixedViolationParser {
 		}
 	}
 
+//	private List<HierarchicalActionSet> getExactActionSets(Violation violation,
+//			List<HierarchicalActionSet> hunkActionSets) {
+//		List<HierarchicalActionSet> deleteActionSets = new ArrayList<>();
+//		for (HierarchicalActionSet hunkActionSet : hunkActionSets) {
+//			int startLine = hunkActionSet.getBugStartLineNum();
+//			int endLine = hunkActionSet.getBugEndLineNum();
+//			if (violation.getStartLineNum() <= startLine && endLine <= violation.getEndLineNum()) {
+//				String astNodeType = hunkActionSet.getAstNodeType();
+//				if (astNodeType.endsWith("Statement") || astNodeType.endsWith("FieldDeclaration")) {
+//					
+//				}
+//			}
+//		}
+//		return deleteActionSets;
+//	}
+
+	private List<Violation> identifyFixRangeHeuristically(List<Violation> violations, List<DiffEntryHunk> diffentryHunks, File revFile) {
+		List<Violation> selectedViolations = new ArrayList<>();
+		for (Violation violation : violations) {
+			int violationStartLineNum = violation.getBugStartLineNum();
+			if (violationStartLineNum > 0) {
+				int violationEndLineNum = violation.getEndLineNum();
+				for (int index = 0, hunkListSize = diffentryHunks.size(); index < hunkListSize; index ++) {
+					DiffEntryHunk hunk = diffentryHunks.get(index);
+					int bugStartLine = hunk.getBugLineStartNum();
+					int bugRange = hunk.getBugRange();
+					if (violationStartLineNum > bugStartLine + bugRange - 1) continue;
+					if (violationEndLineNum < bugStartLine) break;
+					
+					int fixStartLine = hunk.getFixLineStartNum();
+					String diffentry = hunk.getHunk();
+					BufferedReader reader = new BufferedReader(new StringReader(diffentry));
+					String line = null;
+					try {
+						int currentBugLine = bugStartLine - 1;
+						int currentFixLine = fixStartLine - 1;
+						int fixedLines = 0;
+						int bugS = 0;
+						int fixS = 0;
+						int fixE = 0;
+						int bugFixStartLine = 0; // the heuristic inferred fix start line of the corresponding bug
+						int bugFixEndLine = 0;   // the heuristic inferred fix end line of the corresponding bug
+						boolean isFixRange= false;
+						while ((line = reader.readLine()) != null) {
+							if (line.startsWith("+")) {
+								currentFixLine ++;
+								fixedLines++;
+								if ((violationStartLineNum <= currentBugLine && currentBugLine <= violationEndLineNum) ||
+										(violationStartLineNum <= bugS && bugS <= violationEndLineNum)) {
+									if (fixS == 0) fixS = currentFixLine;
+									if (bugFixStartLine == -1) bugFixStartLine = currentFixLine;
+									fixE = currentFixLine;
+									if (isFixRange) bugFixEndLine = currentFixLine;
+								} else {
+									fixedLines = 0;
+									bugS = 0;
+								}
+//								bugS = 0; // fixS = 0;
+							} else if (line.startsWith("-")) {
+								currentBugLine ++;
+								if (bugS == 0 || fixS != 0)	bugS = currentBugLine;// currentBugLine may be larger than the violation end line.
+								
+								// INS combined with DEL, UPD or MOV.
+								// Infer the fix range for a violation heuristically.
+								if (currentBugLine >= violation.getStartLineNum() && currentBugLine <= violation.getEndLineNum()) {
+									bugFixStartLine = -1;
+								}
+								if (currentBugLine <= violation.getEndLineNum() && bugFixStartLine != 0) {
+									isFixRange = true;
+								}
+								if (bugFixEndLine > 0) isFixRange = false;
+								if (bugFixStartLine <= 0) fixS = 0;
+							} else {
+								currentBugLine ++;
+								currentFixLine ++;
+								
+								// pure INS
+								// Infer the fix range for a violation heuristically.
+								if (currentBugLine == violation.getStartLineNum()) {
+									if (bugFixStartLine <= 0) {
+										if (fixedLines != 0) {
+											if (fixedLines > THRESHOLD_LINE) {
+												fixedLines = THRESHOLD_LINE;// insert 3 lines.
+											}
+											bugFixStartLine = currentFixLine - fixedLines;
+											if (bugFixStartLine < violationStartLineNum) {
+												bugFixStartLine = violationStartLineNum;
+											}
+										}
+										else bugFixStartLine = currentFixLine;
+									}
+								}
+								if (currentBugLine == violation.getEndLineNum()) {
+									if (bugFixStartLine != 0 && bugFixEndLine == 0) {
+										bugFixEndLine = currentFixLine + THRESHOLD_LINE;
+										if (bugFixEndLine > violationEndLineNum) {
+											bugFixEndLine = violationEndLineNum;
+										}
+									}
+								}
+								if (bugFixEndLine > 0) isFixRange = false;
+							}
+							
+							if ((violationStartLineNum <= currentBugLine && currentBugLine <= violationEndLineNum)) {
+								if (!violation.getHunks().contains(hunk))
+									violation.getHunks().add(hunk);
+							}
+						}
+						if (violation.getFixStartLineNum() == 0) {
+							violation.setFixStartLineNum(fixS);
+						}
+						violation.setFixEndLineNum(fixE);
+						
+						if (violation.getBugFixStartLineNum() == 0 && bugFixStartLine > 0) {
+							violation.setBugFixStartLineNum(bugFixStartLine);
+						}
+						if (bugFixEndLine > 0) {
+							violation.setBugFixEndLineNum(bugFixEndLine);
+						}
+					} catch (IOException e) {
+						e.printStackTrace();
+					} finally {
+						try {
+							reader.close();
+						} catch (IOException e) {
+							e.printStackTrace();
+						}
+					}
+				}
+
+				if (violation.getHunks().size() == 0) {
+					// This fixed violation cannot be matched with a DiffEntry, it is difficult to identify related source code change for it.
+					this.nullMatchedDiffEntry ++;
+					System.err.println("#NullDiffEntry: " + revFile.getName() + "  :  " +violation.getStartLineNum() + " : " + violation.getEndLineNum() + " : " + violation.getViolationType());
+				} else {
+					selectedViolations.add(violation);
+				}
+			}
+		}
+		
+		return selectedViolations;
+	}
+
 	private boolean containsFiledDeclaration(List<HierarchicalActionSet> hunkActionSets) {
 		for (HierarchicalActionSet hunkActionSet : hunkActionSets) {
 			if (hunkActionSet.getAstNodeType().equals("FieldDeclaration")) {
diff --git a/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/FixedViolationParser.java b/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/FixedViolationParser.java
index 615b80d..123fc5f 100644
--- a/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/FixedViolationParser.java
+++ b/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/FixedViolationParser.java
@@ -15,6 +15,7 @@ import edu.lu.uni.serval.gumtree.regroup.HierarchicalActionSet;
 import edu.lu.uni.serval.gumtree.regroup.HierarchicalRegrouper;
 import edu.lu.uni.serval.utils.FileHelper;
 import edu.lu.uni.serval.utils.ListSorter;
+import edu.lu.uni.serval.violation.code.parser.ViolationSourceCodeTree;
 
 /**
  * Parse fix patterns with GumTree.
@@ -35,8 +36,8 @@ public class FixedViolationParser extends Parser {
 	public int resultType = 0;
 	
 	private File positionFile = null;
-	protected String alarmTypes = "";
-	protected List<Violation> uselessViolations;
+	protected String violationTypes = "";
+//	protected List<Violation> uselessViolations;
 	
 	public void setPositionFile(File positionFile) {
 		this.positionFile = positionFile;
@@ -66,18 +67,18 @@ public class FixedViolationParser extends Parser {
 		} else {
 			// Regroup GumTre results.
 			List<HierarchicalActionSet> allActionSets = new HierarchicalRegrouper().regroupGumTreeResults(gumTreeResults);
-			for (HierarchicalActionSet actionSet : allActionSets) {
-				String astNodeType = actionSet.getAstNodeType();
-				if (astNodeType.endsWith("Statement") || "FieldDeclaration".equals(astNodeType)) {
-					actionSets.add(actionSet);
-				}
-			}
+//			for (HierarchicalActionSet actionSet : allActionSets) {
+//				String astNodeType = actionSet.getAstNodeType();
+//				if (astNodeType.endsWith("Statement") || "FieldDeclaration".equals(astNodeType)) {
+//					actionSets.add(actionSet);
+//				}
+//			}
 			
 			// Filter out modified actions of changing method names, method parameters, variable names and field names in declaration part.
-			// TODO: variable effects range, sub-actions are these kinds of modification?
+			// variable effects range, sub-actions are these kinds of modification?
 //			actionSets.addAll(new ActionFilter().filterOutUselessActions(allActionSets));
 			
-			ListSorter<HierarchicalActionSet> sorter = new ListSorter<>(actionSets);
+			ListSorter<HierarchicalActionSet> sorter = new ListSorter<>(allActionSets);
 			actionSets = sorter.sortAscending();
 			
 			if (actionSets.size() == 0) {
@@ -88,7 +89,8 @@ public class FixedViolationParser extends Parser {
 		}
 	}
 
-	protected List<Violation> readViolations(String fileName) {
+	protected List<Violation> readViolations(File prevFile, File revFile) {
+		String fileName = revFile.getName();
 		List<Violation> violations = new ArrayList<>();
 		String fileContent = FileHelper.readFile(positionFile);
 		BufferedReader reader = null;
@@ -99,12 +101,24 @@ public class FixedViolationParser extends Parser {
 				String[] positionStr = line.split(":");
 				int startLine = Integer.parseInt(positionStr[1]);
 				int endLine = Integer.parseInt(positionStr[2]);
-				String alarmType = positionStr[0];
+				String violationType = positionStr[0];
 				
-				Violation violation = new Violation(startLine, endLine, alarmType);
-				violation.setFileName(fileName.replaceAll("#", "/"));
-				if (uselessViolations.contains(violation)) {
-					continue;
+//				if ("UPM_UNCALLED_PRIVATE_METHOD".equals(violationType)) continue;
+				
+				Violation violation = new Violation(startLine, endLine, violationType);
+				violation.setFileName(fileName);
+
+				/*
+				 *  Get the parent range of a violation.
+				 *  Read DiffEntries with this range to get the start line and end line of a violation.
+				 */
+				ViolationSourceCodeTree alarmTree = new ViolationSourceCodeTree(prevFile, startLine, endLine);
+				alarmTree.locateParentNode(violationType);
+				int violationStartLine = alarmTree.getViolationFinalStartLine();
+				violation.setBugStartLineNum(violationStartLine);
+				if (violationStartLine > 0) {// 0: no source code, -1: range is too large, which contains several inner classes, methods or fields.
+//					FileHelper.outputToFile("logs/testV3.txt", "\n", true);
+					violation.setBugEndLineNum(alarmTree.getViolationFinalEndLine());
 				}
 				violations.add(violation);
 			}
@@ -165,10 +179,10 @@ public class FixedViolationParser extends Parser {
 	}
 
 	public String getAlarmTypes() {
-		return alarmTypes;
+		return violationTypes;
 	}
 	
-	public void setUselessViolations(List<Violation> uselessViolations) {
-		this.uselessViolations = uselessViolations;
-	}
+//	public void setUselessViolations(List<Violation> uselessViolations) {
+//		this.uselessViolations = uselessViolations;
+//	}
 }
diff --git a/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/FixedViolationSingleStatementParser.java b/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/FixedViolationSingleStatementParser.java
index df0f92c..d074206 100644
--- a/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/FixedViolationSingleStatementParser.java
+++ b/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/FixedViolationSingleStatementParser.java
@@ -39,7 +39,7 @@ public class FixedViolationSingleStatementParser extends FixedViolationParser {
 			}
 			
 			// Read the positions of checked violations
-			List<Violation> violations = readViolations(revFile.getName());
+			List<Violation> violations = readViolations(prevFile, revFile);
 			for (HierarchicalActionSet actionSet : actionSets) {
 				// position of buggy statements
 				int startPosition = 0;
@@ -127,7 +127,7 @@ public class FixedViolationSingleStatementParser extends FixedViolationParser {
 				this.patchesSourceCode += Configuration.PATCH_SIGNAL + "\n" + revFile.getName() + "\n" + patchSourceCode + "\n";
 				this.sizes += size + "\n";
 				this.astEditScripts += astEditScripts + "\n";
-				this.alarmTypes += violation.getAlarmType() + "\n";
+				this.violationTypes += violation.getViolationType() + "\n";
 				// 2. source code: raw tokens
 //				String rawTokenEditScripts = getRawTokenEditScripts(actionSet);
 //				// 3. abstract identifiers: 
diff --git a/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/Violation.java b/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/Violation.java
index 4d9ec5a..b22530a 100644
--- a/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/Violation.java
+++ b/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/Violation.java
@@ -13,17 +13,19 @@ public class Violation implements Comparable<Violation> {
 	private int endLineNum;
 	private int bugStartLineNum;
 	private int bugEndLineNum;
-	private int fixStartLineNum;
+	private int fixStartLineNum = 0;
 	private int fixEndLineNum;
-	private String alarmType;
+	private String violationType;
 	private List<DiffEntryHunk> hunks = new ArrayList<>();
 	private List<HierarchicalActionSet> actionSets;
+	private int bugFixStartLineNum = 0; // the heuristic matched fix start line of a violation
+	private int bugFixEndLineNum = 0; // the heuristic matched fix end line of a violation
 
-	public Violation(Integer startLineNum, int endLineNum, String alarmType) {
+	public Violation(Integer startLineNum, int endLineNum, String violationType) {
 		super();
 		this.startLineNum = startLineNum;
 		this.endLineNum = endLineNum;
-		this.alarmType = alarmType;
+		this.violationType = violationType;
 		this.actionSets = new ArrayList<>();
 	}
 
@@ -83,14 +85,30 @@ public class Violation implements Comparable<Violation> {
 		this.hunks = hunks;
 	}
 
-	public String getAlarmType() {
-		return alarmType;
+	public String getViolationType() {
+		return violationType;
 	}
 
 	public List<HierarchicalActionSet> getActionSets() {
 		return actionSets;
 	}
 
+	public int getBugFixStartLineNum() {
+		return bugFixStartLineNum;
+	}
+
+	public void setBugFixStartLineNum(int bugFixStartLineNum) {
+		this.bugFixStartLineNum = bugFixStartLineNum;
+	}
+
+	public int getBugFixEndLineNum() {
+		return bugFixEndLineNum;
+	}
+
+	public void setBugFixEndLineNum(int bugFixEndLineNum) {
+		this.bugFixEndLineNum = bugFixEndLineNum;
+	}
+
 	@Override
 	public int compareTo(Violation v) {
 		return this.startLineNum.compareTo(v.startLineNum);
@@ -98,14 +116,14 @@ public class Violation implements Comparable<Violation> {
 	
 	@Override
 	public String toString() {
-		return this.startLineNum + " : " + this.endLineNum + " : " + this.alarmType;
+		return this.startLineNum + " : " + this.endLineNum + " : " + this.violationType;
 	}
 
 	@Override
 	public boolean equals(Object obj) {
 		if (obj instanceof Violation) {
 			Violation v = (Violation) obj;
-			if (this.fileName.equals(v.fileName) && this.alarmType.equals(v.alarmType) && this.startLineNum == v.startLineNum && this.endLineNum == v.endLineNum) {
+			if (this.fileName.equals(v.fileName) && this.violationType.equals(v.violationType) && this.startLineNum == v.startLineNum && this.endLineNum == v.endLineNum) {
 				return true;
 			}
 		}
diff --git a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser/AkkaParser.java b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser/AkkaParser.java
index 5fe5f9c..4a9a5d4 100644
--- a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser/AkkaParser.java
+++ b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser/AkkaParser.java
@@ -44,7 +44,7 @@ public class AkkaParser {
 
 		ActorSystem system = null;
 		ActorRef parsingActor = null;
-		int numberOfWorkers = 400;
+		int numberOfWorkers = 431;
 		final WorkMessage msg = new WorkMessage(0, msgFiles);
 		try {
 			log.info("Akka begins...");
diff --git a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser/ParseFixPatternActor.java b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser/ParseFixPatternActor.java
index 3f7703a..dc1b5af 100644
--- a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser/ParseFixPatternActor.java
+++ b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser/ParseFixPatternActor.java
@@ -50,7 +50,7 @@ public class ParseFixPatternActor extends UntypedActor {
 		if (message instanceof WorkMessage) {
 			List<MessageFile> files = ((WorkMessage) message).getMsgFiles();
 			int size = files.size();
-			int average = size / numberOfWorkers;
+			int average = (int) Math.round((double) size / numberOfWorkers);
 			
 			for (int i = 0; i < numberOfWorkers; i ++) {
 				int fromIndex = i * average;
diff --git a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser/ParseFixPatternWorker.java b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser/ParseFixPatternWorker.java
index f71205a..2bd9115 100644
--- a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser/ParseFixPatternWorker.java
+++ b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser/ParseFixPatternWorker.java
@@ -4,7 +4,6 @@ import java.io.BufferedReader;
 import java.io.File;
 import java.io.IOException;
 import java.io.StringReader;
-import java.util.ArrayList;
 import java.util.List;
 import java.util.concurrent.ExecutionException;
 import java.util.concurrent.ExecutorService;
@@ -73,27 +72,29 @@ public class ParseFixPatternWorker extends UntypedActor {
 			int id = msg.getId();
 			int counter = 0;
 			
-			int testAlarms = 0;
+			int testViolations = 0;
 			int nullGumTreeResults = 0;
-			int nullMappingGumTreeResults = 0;
 			int noSourceCodeChanges = 0;
 			int noStatementChanges = 0;
+			int nullDiffEntry = 0;
+			int nullMappingGumTreeResults = 0;
 			int pureDeletion = 0;
-			int expNums = 0;
 			int largeHunk = 0;
 			int nullSourceCode = 0;
-			int illegalV = 0;
+			int testInfos = 0;
+			int timeouts = 0;
 
 			// Read violations with Null_Violation_Hunk or Illegal_Line_Position
-			List<Violation> uselessViolations = readUselessViolations("logs/FixedViolationCodeParseResults.log");
+//			List<Violation> uselessViolations = new ArrayList<>();// readUselessViolations("logs/FixedViolationCodeParseResults.log");
 			
 			for (MessageFile msgFile : files) {
 				File revFile = msgFile.getRevFile();
 				File prevFile = msgFile.getPrevFile();
 				File diffentryFile = msgFile.getDiffEntryFile();
 				File positionFile = msgFile.getPositionFile();
-				if (revFile.getName().toLowerCase().contains("/test/")) {
-					testAlarms += countAlarms(positionFile, "#TestViolation:", uselessViolations);
+				if (revFile.getName().toLowerCase().contains("test#") || revFile.getName().toLowerCase().contains("tests#")) {
+//					testViolations += countAlarms(positionFile, "#TestViolation:", uselessViolations);
+					testViolations += countAlarms(positionFile, "#TestViolation:");
 					continue;
 				}
 //				Parser parser = null;
@@ -104,7 +105,7 @@ public class ParseFixPatternWorker extends UntypedActor {
 //					parser = new CommitPatchSingleStatementParser();
 //				}
 				FixedViolationHunkParser parser =  new FixedViolationHunkParser(positionFile);
-				parser.setUselessViolations(uselessViolations);
+//				parser.setUselessViolations(uselessViolations);
 				
 				final ExecutorService executor = Executors.newSingleThreadExecutor();
 				// schedule the work
@@ -112,23 +113,25 @@ public class ParseFixPatternWorker extends UntypedActor {
 				try {
 					// wait for task to complete
 					future.get(Configuration.SECONDS_TO_WAIT, TimeUnit.SECONDS);
-					
+
+					nullDiffEntry += parser.nullMatchedDiffEntry;
 					nullMappingGumTreeResults += parser.nullMappingGumTreeResult;
 					pureDeletion += parser.pureDeletions;
 					largeHunk += parser.largeHunk;
 					nullSourceCode += parser.nullSourceCode;
+					testInfos += parser.testInfos;
 					testingInfo.append(parser.testingInfo);
 					
 					String editScript = parser.getAstEditScripts();
 					if ("".equals(editScript)) {
 						if (parser.resultType == 1) {
-							nullGumTreeResults += countAlarms(positionFile, "", uselessViolations);
+							nullGumTreeResults += countAlarms(positionFile, "");
 //							System.err.println("#NullGumTreeResult:" + revFile.getName());
 						} else if (parser.resultType == 2) {
-							noSourceCodeChanges += countAlarms(positionFile, "", uselessViolations);
+							noSourceCodeChanges += countAlarms(positionFile, "");
 						} else if (parser.resultType == 3) {
-							noStatementChanges += countAlarms(positionFile, "", uselessViolations);
-						} else if (parser.resultType == 4) {
+							noStatementChanges += countAlarms(positionFile, "");
+//						} else if (parser.resultType == 4) {
 //							illegalV += countAlarms(positionFile, "", uselessViolations);
 						}
 					} else {
@@ -159,14 +162,14 @@ public class ParseFixPatternWorker extends UntypedActor {
 				} catch (TimeoutException e) {
 //					err.println("task timed out");
 					future.cancel(true);
-					expNums += countAlarms(positionFile, "#Timeout:", uselessViolations);
+					timeouts += countAlarms(positionFile, "#Timeout:");
 //					System.err.println("#Timeout: " + revFile.getName());
 				} catch (InterruptedException e) {
-					expNums += countAlarms(positionFile, "#TimeInterrupted:", uselessViolations);
+					timeouts += countAlarms(positionFile, "#TimeInterrupted:");
 //					err.println("task interrupted");
 //					System.err.println("#TimeInterrupted: " + revFile.getName());
 				} catch (ExecutionException e) {
-					expNums += countAlarms(positionFile, "#TimeAborted:", uselessViolations);
+					timeouts += countAlarms(positionFile, "#TimeAborted:");
 //					err.println("task aborted");
 //					System.err.println("#TimeAborted: " + revFile.getName());
 				} finally {
@@ -189,9 +192,10 @@ public class ParseFixPatternWorker extends UntypedActor {
 				FileHelper.outputToFile("OUTPUT/testingInfo_" + id + ".list", testingInfo, true);
 				testingInfo.setLength(0);
 			}
-			String statistic = "testAlarms: " + testAlarms + "\nnullGumTreeResults: " + nullGumTreeResults + "\nnullMappingGumTreeResults: " + nullMappingGumTreeResults +
-					"\nnoSourceCodeChanges: " + noSourceCodeChanges + "\npureDeletion: " + pureDeletion + "\nTimeout: " + expNums +
-					"\nlargeHunk: " + largeHunk + "\nnullSourceCode: " + nullSourceCode + "\nnoStatementChanges: " + noStatementChanges + "\nIllegalV: " + illegalV;
+			String statistic = "TestViolations: " + testViolations + "\nNullGumTreeResults: " + nullGumTreeResults + "\nNoSourceCodeChanges: " + noSourceCodeChanges + 
+					"\nNoStatementChanges: " + noStatementChanges + "\nNullDiffEntry: " + nullDiffEntry + "\nNullMatchedGumTreeResults: " + nullMappingGumTreeResults +
+					"\nPureDeletion: " + pureDeletion + "\nLargeHunk: " + largeHunk + "\nNullSourceCode: " + nullSourceCode + 
+					"\nTestingInfo: " + testInfos + "\nTimeout: " + timeouts;// + "\nIllegalV: " + illegalV;
 			FileHelper.outputToFile("OUTPUT/statistic_" + id + ".list", statistic, false);
 
 			log.info("Worker #" + id +"Finish of parsing " + counter + " files...");
@@ -202,39 +206,39 @@ public class ParseFixPatternWorker extends UntypedActor {
 		}
 	}
 
-	private List<Violation> readUselessViolations(String filePath) {
-		List<Violation> uselessViolations = new ArrayList<>();
-		
-		String content = FileHelper.readFile(filePath);
-		BufferedReader reader = new BufferedReader(new StringReader(content));
-		String line = null;
-		try {
-			while ((line = reader.readLine()) != null) {
-				if (line.startsWith("#")) {
-					String[] elements = line.split(":");
-					String fileName = elements[1];
-					int startLine = Integer.parseInt(elements[2]);
-					int endLine = Integer.parseInt(elements[3]);
-					String violationType = elements[4];
-					
-					Violation violation = new Violation(startLine, endLine, violationType);
-					violation.setFileName(fileName);
-					uselessViolations.add(violation);
-				}
-			}
-		} catch (IOException e) {
-			e.printStackTrace();
-		} finally {
-			try {
-				reader.close();
-			} catch (IOException e) {
-				e.printStackTrace();
-			}
-		}
-		return uselessViolations;
-	}
+//	private List<Violation> readUselessViolations(String filePath) {
+//		List<Violation> uselessViolations = new ArrayList<>();
+//		
+//		String content = FileHelper.readFile(filePath);
+//		BufferedReader reader = new BufferedReader(new StringReader(content));
+//		String line = null;
+//		try {
+//			while ((line = reader.readLine()) != null) {
+//				if (line.startsWith("#")) {
+//					String[] elements = line.split(":");
+//					String fileName = elements[1];
+//					int startLine = Integer.parseInt(elements[2]);
+//					int endLine = Integer.parseInt(elements[3]);
+//					String violationType = elements[4];
+//					
+//					Violation violation = new Violation(startLine, endLine, violationType);
+//					violation.setFileName(fileName);
+//					uselessViolations.add(violation);
+//				}
+//			}
+//		} catch (IOException e) {
+//			e.printStackTrace();
+//		} finally {
+//			try {
+//				reader.close();
+//			} catch (IOException e) {
+//				e.printStackTrace();
+//			}
+//		}
+//		return uselessViolations;
+//	}
 
-	private int countAlarms(File positionFile, String type, List<Violation> uselessViolations) {
+	private int countAlarms(File positionFile, String type) {//, List<Violation> uselessViolations) {
 		int counter = 0;
 		String content = FileHelper.readFile(positionFile);
 		BufferedReader reader = new BufferedReader(new StringReader(content));
@@ -243,16 +247,11 @@ public class ParseFixPatternWorker extends UntypedActor {
 			while ((line = reader.readLine()) != null) {
 				String[] elements = line.split(":");
 				Violation v = new Violation(Integer.parseInt(elements[1]), Integer.parseInt(elements[2]), elements[0]);
-				String fileName = positionFile.getName().replaceAll("#", "/").replace(".txt", ".java");
+				String fileName = positionFile.getName().replace(".txt", ".java");
 				v.setFileName(fileName);
-				if (!uselessViolations.contains(v)) {
-					counter ++;
-					
-					if (!"".equals(type)) {
-						if (!uselessViolations.contains(v)) {
-							System.err.println(type + fileName + ":" + elements[1] + ":" + elements[2] + ":" + elements[0]);
-						}
-					}
+				counter ++;
+				if (!"".equals(type)) {
+					System.err.println(type + fileName + ":" + elements[1] + ":" + elements[2] + ":" + elements[0]);
 				}
 			}
 		} catch (IOException e) {
diff --git a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/AkkaMatcher.java b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/AkkaMatcher.java
new file mode 100644
index 0000000..e02b90b
--- /dev/null
+++ b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/AkkaMatcher.java
@@ -0,0 +1,213 @@
+package edu.lu.uni.serval.MultipleThreadsParser2;
+
+import java.io.File;
+import java.io.FileInputStream;
+import java.io.FileNotFoundException;
+import java.io.IOException;
+import java.util.ArrayList;
+import java.util.HashMap;
+import java.util.List;
+import java.util.Map;
+import java.util.Scanner;
+
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import akka.actor.ActorRef;
+import akka.actor.ActorSystem;
+import edu.lu.uni.serval.config.Configuration;
+import edu.lu.uni.serval.utils.FileHelper;
+import edu.lu.uni.serval.utils.MapSorter;
+
+/**
+ * Multi-thread parser of parsing the difference between buggy code file and fixed code file.
+ * 
+ * @author kui.liu
+ *
+ */
+public class AkkaMatcher {
+	
+	private static Logger log = LoggerFactory.getLogger(AkkaMatcher.class);
+
+	public static void main(String[] args) {
+		List<Double[]> extractedFeatures = readStringList(Configuration.ROOT_PATH + "TestData/2_CNNinput.csv");
+		int size = extractedFeatures.size();
+		List<Double[]> trainingFeatures = extractedFeatures.subList(0, size - 178);
+		List<Double[]> bugFeatures = extractedFeatures.subList(size - 178, size);
+		
+		
+		for (int index = 0; index < 178; index ++) {
+//			AkkaMatcher computor = new AkkaMatcher();
+//			computor.matchFixPatterns(bugFeatures.get(index), index, trainingFeatures);
+			Map<Integer, Double> similarities = new HashMap<>();
+			for (int i = 0; i < size - 178; i ++) {
+				Double similarity = Math.abs(computeSimilarity(bugFeatures.get(index), trainingFeatures.get(i)));
+				similarities.put(i + 1, similarity);
+			}
+			
+			MapSorter<Integer, Double> mapSorter = new MapSorter<Integer, Double>();
+			Map<Integer, Double> sortedSimilarities = mapSorter.sortByValueDescending(similarities);
+			
+			List<Integer> similarityList = new ArrayList<>();
+			double similarity = 0;
+			int num = 0;
+			for (Map.Entry<Integer, Double> entry : sortedSimilarities.entrySet()) {
+				if (entry.getValue().equals(Double.NaN)) {
+					continue;
+				}
+				if (entry.getValue() == similarity) {
+					continue;
+				}
+				similarityList.add(entry.getKey());
+				similarity = entry.getValue();
+				if (++ num % 100 == 0) {
+					break;
+				}
+			}
+			outputMatchedPatterns(similarityList, index + 1);
+		}
+		
+	}
+	
+	private static Double computeSimilarity(Double[] feature, Double[] trainingFeature) {
+		Double similarity = DistanceCalculator.cosineSimilarityDistance(trainingFeature, feature);
+		return similarity;
+	}
+	
+	private static void outputMatchedPatterns(List<Integer> similarityList, int bugId) {
+		String outputFile = Configuration.ROOT_PATH + "TestData/MatchedFixPatterns/Bug_" + bugId + ".list";
+		StringBuilder builder = new StringBuilder("BugId: " + bugId + "\n\n\n");
+		
+		for (int i = 0, size = similarityList.size(); i < size; i ++) {
+			int patternPosition = similarityList.get(i);
+			builder.append(readPattern(patternPosition));
+		}
+		
+		FileHelper.outputToFile(outputFile, builder, false);
+	}
+	
+	private static String readPattern(int patternPosition) {
+		String patternInfo = "";
+		FileInputStream fis = null;
+		Scanner scanner = null;
+		try {
+			fis = new FileInputStream(Configuration.SELECTED_PATCHES_SOURE_CODE_FILE);
+			scanner = new Scanner(fis);
+			int index = 0;
+			while (scanner.hasNextLine()) {
+				String line = scanner.nextLine();
+				if (line.equals("PATCH###")) {
+					if (patternPosition == index) {
+						break;
+					}
+					index ++;
+					patternInfo = "";
+				}
+				patternInfo += line + "\n";
+			}
+		} catch (FileNotFoundException e) {
+			e.printStackTrace();
+		} finally {
+			try {
+				scanner.close();
+				fis.close();
+			} catch (IOException e) {
+				e.printStackTrace();
+			}
+		}
+		return patternInfo;
+	}
+
+	@SuppressWarnings("deprecation")
+	public void matchFixPatterns(Double[] bugFeature, int bugIndex, List<Double[]> trainingFeatures) {
+		ActorSystem system = null;
+		ActorRef parsingActor = null;
+		int numberOfWorkers = 100;
+		final WorkMessage msg = new WorkMessage(bugIndex, bugFeature, trainingFeatures);
+		try {
+			log.info("Akka begins...");
+			system = ActorSystem.create("Matching-FixPattern-System");
+			parsingActor = system.actorOf(MatchFixPatternActor.props(numberOfWorkers), "match-fix-pattern-actor");
+			parsingActor.tell(msg, ActorRef.noSender());
+		} catch (Exception e) {
+			system.shutdown();
+			e.printStackTrace();
+		}
+	}
+	
+
+	/**
+	 * Get bug commit-related files.
+	 * 
+	 * @return
+	 */
+	public static List<MessageFile> getMessageFiles() {
+		String inputPath = Configuration.GUM_TREE_INPUT; //DiffEntries  prevFiles  revFiles
+		File inputFileDirector = new File(inputPath);
+		File[] files = inputFileDirector.listFiles();   // project folders
+		log.info("Projects: " + files.length);
+		List<MessageFile> msgFiles = new ArrayList<>();
+		
+		for (File file : files) {
+			if (!file.isDirectory()) continue;
+//			if (!(file.getName().startsWith("k") || file.getName().startsWith("l"))) continue;
+			if (file.getName().startsWith("a") || file.getName().startsWith("b")
+					|| file.getName().startsWith("c") || file.getName().startsWith("d")
+				|| file.getName().startsWith("e") || file.getName().startsWith("f")
+				|| file.getName().startsWith("g") || file.getName().startsWith("h") 
+				||file.getName().startsWith("h") || file.getName().startsWith("i")
+				|| file.getName().startsWith("k") || file.getName().startsWith("l")
+				|| file.getName().startsWith("j") || file.getName().startsWith("t")) continue;
+//			if (!file.getName().startsWith("j")) continue;
+			log.info("Project name: " + file.getName());
+			String projectFolder = file.getPath();
+			File revFileFolder = new File(projectFolder + "/revFiles/");// revised file folder
+			File[] revFiles = revFileFolder.listFiles();
+			for (File revFile : revFiles) {
+				if (revFile.getName().endsWith(".java")) {
+					File prevFile = new File(projectFolder + "/prevFiles/prev_" + revFile.getName());// previous file
+					File diffentryFile = new File(projectFolder + "/DiffEntries/" + revFile.getName().replace(".java", ".txt")); // DiffEntry file
+					MessageFile msgFile = new MessageFile(revFile, prevFile, diffentryFile);
+					msgFiles.add(msgFile);
+				}
+			}
+		}
+		
+		return msgFiles;
+	}
+	
+	public static List<Double[]> readStringList(String inputFile) {
+		List<Double[]> list = new ArrayList<>();
+		FileInputStream fis = null;
+		Scanner scanner = null;
+		try {
+			fis = new FileInputStream(inputFile);
+			scanner = new Scanner(fis);
+			while(scanner.hasNextLine()) {
+				String line = scanner.nextLine();
+				Double[] features = doubleParseFeature(line);
+				list.add(features);
+			}
+		} catch (FileNotFoundException e) {
+			e.printStackTrace();
+		} finally {
+			try {
+				scanner.close();
+				fis.close();
+			} catch (IOException e) {
+				e.printStackTrace();
+			}
+		}
+		return list;
+	}
+	
+	private static Double[] doubleParseFeature(String feature) {
+		String[] features = feature.split(", ");
+		int length = features.length;
+		Double[] doubleFeatures = new Double[length];
+		for (int i = 0; i < length; i ++) {
+			doubleFeatures[i] = Double.parseDouble(features[i]);
+		}
+		return doubleFeatures;
+	}
+}
diff --git a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/DistanceCalculator.java b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/DistanceCalculator.java
new file mode 100644
index 0000000..8ce4a9a
--- /dev/null
+++ b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/DistanceCalculator.java
@@ -0,0 +1,68 @@
+package edu.lu.uni.serval.MultipleThreadsParser2;
+
+public class DistanceCalculator {
+	
+	public static double calculateDistance(DistanceFunction distanceType, Double[] targetPoint, Double[] selfPoint) {
+		double distance = 0;
+		switch (distanceType) {
+		case EUCLIDEAN:
+			distance = DistanceCalculator.euclideanDistance(targetPoint, selfPoint);
+			break;
+		case COSINESIMILARITY:
+			distance = DistanceCalculator.cosineSimilarityDistance(targetPoint, selfPoint);
+			break;
+		case MANHATTAN:
+			distance = DistanceCalculator.manhattanDistance(targetPoint, selfPoint);
+			break;
+		default:
+			distance = DistanceCalculator.euclideanDistance(targetPoint, selfPoint);
+			break;
+		}
+		return distance;
+	}
+
+	public static double euclideanDistance(Double[] targetPoint, Double[] selfPoint) {
+		double sum = 0.0;
+
+		for (int i = 0, length = targetPoint.length; i < length; i++) {
+			double diff = targetPoint[i] - selfPoint[i];
+			sum += diff * diff;
+		}
+		return Math.sqrt(sum);
+	}
+
+	public static Double cosineSimilarityDistance(Double[] targetPoint, Double[] selfPoint) {
+		Double sim = 0.0d;
+		int length = targetPoint.length;
+		double dot = 0.0d;
+		double mag1 = 0.0d;
+		double mag2 = 0.0d;
+
+		for (int i = 0; i < length; i ++) {
+			dot += targetPoint[i] * selfPoint[i];
+			mag1 += Math.pow(targetPoint[i], 2);
+			mag2 += Math.pow(selfPoint[i], 2);
+		}
+
+		sim = dot / (Math.sqrt(mag1) * Math.sqrt(mag2));
+		return sim;
+	}
+
+	public static Double manhattanDistance(Double[] targetPoint, Double[] selfPoint) {
+		double result = 0.0;
+		for (int i = 0; i < targetPoint.length; i++) {
+			result += Math.abs(selfPoint[i] - targetPoint[i]);
+		}
+		return result;
+	}
+
+	public static Double minkowskiDistance(Double[] targetPoint, Double[] selfPoint) {
+		return null;
+	}
+	
+	public static Double jaccardSimilarity(Double[] targetPoint, Double[] selfPoint) {
+		return null;
+	}
+
+}
+
diff --git a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/DistanceFunction.java b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/DistanceFunction.java
new file mode 100644
index 0000000..a54b3a3
--- /dev/null
+++ b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/DistanceFunction.java
@@ -0,0 +1,5 @@
+package edu.lu.uni.serval.MultipleThreadsParser2;
+
+public enum DistanceFunction {
+	EUCLIDEAN, COSINESIMILARITY, MANHATTAN
+}
diff --git a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/MatchFixPatternActor.java b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/MatchFixPatternActor.java
new file mode 100644
index 0000000..754375b
--- /dev/null
+++ b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/MatchFixPatternActor.java
@@ -0,0 +1,172 @@
+package edu.lu.uni.serval.MultipleThreadsParser2;
+
+import java.io.FileInputStream;
+import java.io.FileNotFoundException;
+import java.io.IOException;
+import java.util.ArrayList;
+import java.util.HashMap;
+import java.util.List;
+import java.util.Map;
+import java.util.Scanner;
+
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import akka.actor.ActorRef;
+import akka.actor.Props;
+import akka.actor.UntypedActor;
+import akka.japi.Creator;
+import akka.routing.RoundRobinPool;
+import edu.lu.uni.serval.config.Configuration;
+import edu.lu.uni.serval.utils.FileHelper;
+import edu.lu.uni.serval.utils.ListSorter;
+import edu.lu.uni.serval.utils.MapSorter;
+
+public class MatchFixPatternActor extends UntypedActor {
+	
+	private static Logger logger = LoggerFactory.getLogger(MatchFixPatternActor.class);
+
+	private ActorRef mineRouter;
+	private final int numberOfWorkers;
+	private int counter = 0;
+	
+	public MatchFixPatternActor(int numberOfWorkers) {
+		mineRouter = this.getContext().actorOf(new RoundRobinPool(numberOfWorkers)
+				.props(MatchFixPatternWorker.props()), "match-fix-pattern-router");
+		this.numberOfWorkers = numberOfWorkers;
+	}
+
+	public static Props props(final int numberOfWorkers) {
+		
+		return Props.create(new Creator<MatchFixPatternActor>() {
+
+			private static final long serialVersionUID = 9207427376110704705L;
+
+			@Override
+			public MatchFixPatternActor create() throws Exception {
+				return new MatchFixPatternActor(numberOfWorkers);
+			}
+			
+		});
+	}
+	
+	@SuppressWarnings("deprecation")
+	@Override
+	public void onReceive(Object message) throws Exception {
+		if (message instanceof WorkMessage) {
+			WorkMessage msg = (WorkMessage) message;
+			List<Double[]> trainingFeatures = msg.getTrainingFeatures();
+			int size = trainingFeatures.size();
+			int average = size / numberOfWorkers;
+			this.bugId = msg.getId();
+			Double[] bugFeature = msg.getBugFeature();
+			
+			for (int i = 0; i < numberOfWorkers; i ++) {
+				int fromIndex = i * average;
+				int toIndex = (i + 1) * average;
+				if (i == numberOfWorkers - 1) {
+					toIndex = size;
+				}
+				
+				List<Double[]> subTrainingFeatures = new ArrayList<>();
+				subTrainingFeatures.addAll(trainingFeatures.subList(fromIndex, toIndex));
+				final WorkMessage workMsg = new WorkMessage(bugId, bugFeature, subTrainingFeatures);
+				workMsg.setNum(i + 1);
+				mineRouter.tell(workMsg, getSelf());
+				logger.info("Assign a task to worker #" + (i + 1) + "...");
+			}
+		} else if (message instanceof ReturnMessage) {
+			counter ++;
+			logger.info(counter + " workers finished their work...");
+			ReturnMessage rMsg = (ReturnMessage) message;
+			returnMessages.add(rMsg);
+			
+			if (counter >= numberOfWorkers) {
+				ListSorter<ReturnMessage> sorter = new ListSorter<ReturnMessage>(returnMessages);
+				returnMessages = sorter.sortAscending();
+				
+				Map<Integer, Double> similarities = new HashMap<>();
+				int index = 0;
+				for (int i = 0; i < numberOfWorkers; i ++) {
+					ReturnMessage returnMessage = returnMessages.get(i);
+					List<Double> similarity = returnMessage.getSimilarities();
+					for (int j = 0, size = similarity.size(); j < size; j ++) {
+						index ++;
+						similarities.put(index, similarity.get(j));
+					}
+				}
+				
+				MapSorter<Integer, Double> mapSorter = new MapSorter<Integer, Double>();
+				Map<Integer, Double> sortedSimilarities = mapSorter.sortByValueDescending(similarities);
+				
+				List<Integer> similarityList = new ArrayList<>();
+				double similarity = 0;
+				int num = 0;
+				for (Map.Entry<Integer, Double> entry : sortedSimilarities.entrySet()) {
+					if (entry.getValue() == similarity) {
+						continue;
+					}
+					similarityList.add(entry.getKey());
+					similarity = entry.getValue();
+					if (++ num % 100 == 0) {
+						break;
+					}
+				}
+				outputMatchedPatterns(similarityList);
+				logger.info("All workers finished their work...");
+				this.getContext().stop(mineRouter);
+				this.getContext().stop(getSelf());
+				this.getContext().system().shutdown();
+			}
+		} else {
+			unhandled(message);
+		}
+	}
+	
+	private void outputMatchedPatterns(List<Integer> similarityList) {
+		String outputFile = Configuration.ROOT_PATH + "TestData/MatchedFixPatterns/Bug_" + bugId + ".list";
+		StringBuilder builder = new StringBuilder("BugId: " + bugId + "\n\n\n");
+		
+		for (int i = 0, size = similarityList.size(); i < size; i ++) {
+			int patternPosition = similarityList.get(i);
+			builder.append(readPattern(patternPosition));
+		}
+		
+		FileHelper.outputToFile(outputFile, builder, false);
+	}
+	
+	private String readPattern(int patternPosition) {
+		String patternInfo = "";
+		FileInputStream fis = null;
+		Scanner scanner = null;
+		try {
+			fis = new FileInputStream(Configuration.SELECTED_PATCHES_SOURE_CODE_FILE);
+			scanner = new Scanner(fis);
+			int index = 0;
+			while (scanner.hasNextLine()) {
+				String line = scanner.nextLine();
+				if (line.equals("PATCH###")) {
+					if (patternPosition == index) {
+						break;
+					}
+					index ++;
+					patternInfo = "";
+				}
+				patternInfo += line + "\n";
+			}
+		} catch (FileNotFoundException e) {
+			e.printStackTrace();
+		} finally {
+			try {
+				scanner.close();
+				fis.close();
+			} catch (IOException e) {
+				e.printStackTrace();
+			}
+		}
+		return patternInfo;
+	}
+	
+	private int bugId;
+	private List<ReturnMessage> returnMessages = new ArrayList<>();
+}
diff --git a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/MatchFixPatternWorker.java b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/MatchFixPatternWorker.java
new file mode 100644
index 0000000..5470afb
--- /dev/null
+++ b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/MatchFixPatternWorker.java
@@ -0,0 +1,60 @@
+package edu.lu.uni.serval.MultipleThreadsParser2;
+
+import java.util.ArrayList;
+import java.util.List;
+
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import akka.actor.Props;
+import akka.actor.UntypedActor;
+import akka.japi.Creator;
+
+public class MatchFixPatternWorker extends UntypedActor {
+	private static Logger log = LoggerFactory.getLogger(MatchFixPatternActor.class);
+	
+	public MatchFixPatternWorker() {
+	}
+
+	public static Props props() {
+		return Props.create(new Creator<MatchFixPatternWorker>() {
+
+			private static final long serialVersionUID = -7615153844097275009L;
+
+			@Override
+			public MatchFixPatternWorker create() throws Exception {
+				return new MatchFixPatternWorker();
+			}
+			
+		});
+	}
+
+	@Override
+	public void onReceive(Object message) throws Exception {
+		if (message instanceof WorkMessage) {
+			WorkMessage msg = (WorkMessage) message;
+			List<Double[]> trainingFeatures = msg.getTrainingFeatures();
+			Double[] bugFeature = msg.getBugFeature();
+			int bugID = msg.getId();
+			int workNum = msg.getNum();
+			
+			List<Double> similarities = new ArrayList<>();
+			for (int i = 0, size = trainingFeatures.size(); i < size; i ++) {
+				Double similarity = Math.abs(computeSimilarity(bugFeature, trainingFeatures.get(i)));
+				similarities.add(similarity);
+			}
+
+			final ReturnMessage rMsg = new ReturnMessage(bugID, workNum, similarities);
+			log.info("Worker #" + workNum + " finished the work...");
+			this.getSender().tell(rMsg, getSelf());
+		} else {
+			unhandled(message);
+		}
+	}
+
+	private Double computeSimilarity(Double[] feature, Double[] trainingFeature) {
+		Double similarity = DistanceCalculator.cosineSimilarityDistance(trainingFeature, feature);
+		return similarity;
+	}
+
+}
diff --git a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/MessageFile.java b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/MessageFile.java
new file mode 100644
index 0000000..7cd6ff2
--- /dev/null
+++ b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/MessageFile.java
@@ -0,0 +1,39 @@
+package edu.lu.uni.serval.MultipleThreadsParser2;
+
+import java.io.File;
+
+public class MessageFile {
+	
+	private File revFile;
+	private File prevFile;
+	private File diffEntryFile;
+	private File positionFile;
+	
+	public MessageFile(File revFile, File prevFile, File diffEntryFile) {
+		super();
+		this.revFile = revFile;
+		this.prevFile = prevFile;
+		this.diffEntryFile = diffEntryFile;
+	}
+
+	public File getRevFile() {
+		return revFile;
+	}
+	
+	public File getPrevFile() {
+		return prevFile;
+	}
+	
+	public File getDiffEntryFile() {
+		return diffEntryFile;
+	}
+
+	public File getPositionFile() {
+		return positionFile;
+	}
+
+	public void setPositionFile(File positionFile) {
+		this.positionFile = positionFile;
+	}
+	
+}
diff --git a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/ReturnMessage.java b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/ReturnMessage.java
new file mode 100644
index 0000000..af52dd7
--- /dev/null
+++ b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/ReturnMessage.java
@@ -0,0 +1,35 @@
+package edu.lu.uni.serval.MultipleThreadsParser2;
+
+import java.util.List;
+
+public class ReturnMessage implements Comparable<ReturnMessage>{
+	
+	private int bugId;
+	private Integer workerId;
+	private List<Double> similarities;
+	
+	public ReturnMessage(int bugId, int workerId, List<Double> similarities) {
+		super();
+		this.bugId = bugId;
+		this.workerId = workerId;
+		this.similarities = similarities;
+	}
+
+	public int getBugId() {
+		return bugId;
+	}
+
+	public int getWorkerId() {
+		return workerId;
+	}
+
+	public List<Double> getSimilarities() {
+		return similarities;
+	}
+
+	@Override
+	public int compareTo(ReturnMessage o) {
+		return this.workerId.compareTo(o.workerId);
+	}
+	
+}
diff --git a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/WorkMessage.java b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/WorkMessage.java
new file mode 100644
index 0000000..b6e8356
--- /dev/null
+++ b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/WorkMessage.java
@@ -0,0 +1,39 @@
+package edu.lu.uni.serval.MultipleThreadsParser2;
+
+import java.util.List;
+
+public class WorkMessage {
+
+	private int id;
+	private Double[] bugFeature;
+	private List<Double[]> trainingFeatures;
+	private int num;
+	
+	public WorkMessage(int id, Double[] bugFeature, List<Double[]> trainingFeatures) {
+		super();
+		this.id = id;
+		this.bugFeature = bugFeature;
+		this.trainingFeatures = trainingFeatures;
+	}
+
+	public int getId() {
+		return id;
+	}
+
+	public Double[] getBugFeature() {
+		return bugFeature;
+	}
+
+	public List<Double[]> getTrainingFeatures() {
+		return trainingFeatures;
+	}
+
+	public int getNum() {
+		return num;
+	}
+
+	public void setNum(int num) {
+		this.num = num;
+	}
+
+}
diff --git a/src/main/java/edu/lu/uni/serval/bugLocalization/BuggyTreeParser.java b/src/main/java/edu/lu/uni/serval/bugLocalization/BuggyTreeParser.java
index 3db0692..6cda3c8 100644
--- a/src/main/java/edu/lu/uni/serval/bugLocalization/BuggyTreeParser.java
+++ b/src/main/java/edu/lu/uni/serval/bugLocalization/BuggyTreeParser.java
@@ -14,7 +14,7 @@ import edu.lu.uni.serval.config.Configuration;
 import edu.lu.uni.serval.gumtree.regroup.SimpleTree;
 import edu.lu.uni.serval.gumtree.regroup.SimplifyTree;
 import edu.lu.uni.serval.utils.FileHelper;
-import edu.lu.uni.serval.violation.code.parser.AlarmTree;
+import edu.lu.uni.serval.violation.code.parser.ViolationSourceCodeTree;
 
 /**
  * 
@@ -60,9 +60,9 @@ public class BuggyTreeParser {
         	for (File javaFile : javaFiles) {
         		if (javaFile.getPath().endsWith(fileName)) {
         			
-        			AlarmTree alarmTree = new AlarmTree(javaFile, startLine, endLine);
+        			ViolationSourceCodeTree alarmTree = new ViolationSourceCodeTree(javaFile, startLine, endLine);
         			alarmTree.extract();
-        			List<ITree> matchedTrees = alarmTree.getAlarmTrees();
+        			List<ITree> matchedTrees = alarmTree.getViolationSourceCodeTrees();
         			SimpleTree simpleTree = new SimpleTree();
         			simpleTree.setLabel("Block");
     				simpleTree.setNodeType("Block");
diff --git a/src/main/java/edu/lu/uni/serval/bugLocalization/FixedAlarms.java b/src/main/java/edu/lu/uni/serval/bugLocalization/FixedAlarms.java
new file mode 100644
index 0000000..9d9994c
--- /dev/null
+++ b/src/main/java/edu/lu/uni/serval/bugLocalization/FixedAlarms.java
@@ -0,0 +1,100 @@
+package edu.lu.uni.serval.bugLocalization;
+
+import java.io.File;
+import java.io.FileInputStream;
+import java.io.FileNotFoundException;
+import java.io.IOException;
+import java.util.HashMap;
+import java.util.Map;
+import java.util.Scanner;
+
+import edu.lu.uni.serval.config.Configuration;
+import edu.lu.uni.serval.utils.Exporter;
+import edu.lu.uni.serval.utils.FileHelper;
+import edu.lu.uni.serval.utils.MapSorter;
+
+public class FixedAlarms {
+	/**
+	 *
+unfixed alarms
+321403
+5336
+MaxLength: 1508
+	 * @param args
+	 */
+
+	public static void main(String[] args) {
+		String fileName = "unfixedAlarms";
+		String tokensFile = Configuration.ROOT_PATH + "Alarms_tokens/" + fileName + ".list"; // MaxLength: 1508
+		FileHelper.deleteFile(Configuration.ROOT_PATH + "Alarms_tokens/" + fileName + "Tokens.list");
+		
+		int maxLength = 0;
+		StringBuilder tokensBuilder = new StringBuilder();
+		StringBuilder sizesBuilder = new StringBuilder();
+		Map<String, Integer> alarmTypes = new HashMap<>();
+		FileInputStream fis = null; 
+		Scanner scanner = null;
+		int counter = 0;
+		try {
+			fis = new FileInputStream(tokensFile);
+			scanner = new Scanner(fis);
+			
+			while (scanner.hasNextLine()) {
+				String line = scanner.nextLine();
+				int colonIndex = line.indexOf(":");
+				String alarmType = line.substring(0, colonIndex);
+				if (alarmTypes.containsKey(alarmType)) {
+					alarmTypes.put(alarmType, alarmTypes.get(alarmType) + 1);
+				} else {
+					alarmTypes.put(alarmType, 1);
+				}
+				
+				line = line.substring(colonIndex + 1);
+				colonIndex = line.indexOf(":");
+				String violationFileName = line.substring(0, colonIndex);
+				line = line.substring(colonIndex + 1);
+				colonIndex = line.indexOf(":");
+				String startLine = line.substring(0, colonIndex);
+				line = line.substring(colonIndex + 1);
+				colonIndex = line.indexOf(":");
+				String endLine = line.substring(0, colonIndex);
+				
+				String tokens = line.substring(colonIndex + 1);
+				String[] tokensArray = tokens.split(" ");
+				int length = tokensArray.length;
+				if (length > maxLength) maxLength = length;
+				tokensBuilder.append(tokens + "\n");
+				sizesBuilder.append(length + "\n");
+				
+				if (++ counter % 5000 == 0) {
+					FileHelper.outputToFile(Configuration.ROOT_PATH + "Alarms_tokens/" + fileName + "Tokens.list", tokensBuilder, true);
+					tokensBuilder.setLength(0);
+				}
+			}
+		} catch (FileNotFoundException e) {
+			e.printStackTrace();
+		} finally {
+			try {
+				scanner.close();
+				fis.close();
+			} catch (IOException e) {
+				e.printStackTrace();
+			}
+		}
+		
+		System.out.println("MaxLength: " + maxLength);
+		FileHelper.outputToFile(Configuration.ROOT_PATH + "Alarms_tokens/" + fileName + "Tokens.list", tokensBuilder, true);
+		tokensBuilder.setLength(0);
+		FileHelper.outputToFile(Configuration.ROOT_PATH + "Alarms_tokens/" + fileName + "TokenSizes.csv", sizesBuilder, false);
+		MapSorter<String, Integer> sorter = new MapSorter<String, Integer>();
+		alarmTypes = sorter.sortByKeyAscending(alarmTypes);
+		String[] columns = { "Alarm Type", "amount" };
+		Exporter.exportOutliers(alarmTypes, new File(Configuration.ROOT_PATH + "Alarms_tokens/" + fileName + "TokenTypes.xls"), 1, columns);
+//		String s = "";
+//		for (Map.Entry<String, Integer> entry : alarmTypes.entrySet()) {
+//			s += entry.getKey() + " : " + entry.getValue() + "\n";
+//
+//		}
+//		FileHelper.outputToFile(Configuration.ROOT_PATH + "Alarms_tokens/fixedAlarmTypesAmount.list", s, false);
+	}
+}
diff --git a/src/main/java/edu/lu/uni/serval/config/Configuration.java b/src/main/java/edu/lu/uni/serval/config/Configuration.java
index c7d7995..afa2ce3 100644
--- a/src/main/java/edu/lu/uni/serval/config/Configuration.java
+++ b/src/main/java/edu/lu/uni/serval/config/Configuration.java
@@ -2,7 +2,7 @@ package edu.lu.uni.serval.config;
 
 public class Configuration {
 	
-	public static final long SECONDS_TO_WAIT = 120L;
+	public static final long SECONDS_TO_WAIT = 30L;
 	
 	public static final String ROOT_PATH = "../FPM_Violations/"; // The root path of all output data.
 
diff --git a/src/main/java/edu/lu/uni/serval/gumtree/regroup/HierarchicalRegrouper.java b/src/main/java/edu/lu/uni/serval/gumtree/regroup/HierarchicalRegrouper.java
index f4e5c2f..cd057fe 100644
--- a/src/main/java/edu/lu/uni/serval/gumtree/regroup/HierarchicalRegrouper.java
+++ b/src/main/java/edu/lu/uni/serval/gumtree/regroup/HierarchicalRegrouper.java
@@ -186,6 +186,8 @@ public class HierarchicalRegrouper {
 	private Action findParentAction(Action action, List<Action> actions) {
 		
 		ITree parent = action.getNode().getParent();
+		if (parent.getType() == 55) return null;
+		
 		if (action instanceof Addition) {
 			parent = ((Addition) action).getParent(); // parent in the fixed source code tree
 		}
diff --git a/src/main/java/edu/lu/uni/serval/gumtree/regroup/HunkActionFilter.java b/src/main/java/edu/lu/uni/serval/gumtree/regroup/HunkActionFilter.java
index 3f26ff3..f3accce 100644
--- a/src/main/java/edu/lu/uni/serval/gumtree/regroup/HunkActionFilter.java
+++ b/src/main/java/edu/lu/uni/serval/gumtree/regroup/HunkActionFilter.java
@@ -8,8 +8,6 @@ import java.util.ArrayList;
 import java.util.List;
 
 import org.eclipse.jdt.core.dom.CompilationUnit;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
 
 import com.github.gumtreediff.actions.model.Move;
 import com.github.gumtreediff.actions.model.Update;
@@ -21,10 +19,6 @@ import edu.lu.uni.serval.diffentry.DiffEntryHunk;
 
 public class HunkActionFilter {
 	
-	private static final int LIMITATION_OF_LINE_NUMBERS = 5;
-	
-	private static Logger log = LoggerFactory.getLogger(HunkActionFilter.class);
-
 	/**
 	 * Filter out the modify actions, which are not in the DiffEntry hunks, without considering the same parent node.
 	 * 
@@ -200,7 +194,14 @@ public class HunkActionFilter {
 	private int getEndPosition(List<ITree> children) {
 		int endPosition = 0;
 		for (ITree child : children) {
-			if (child.getLabel().endsWith("Body")) {
+			int type = child.getType();
+			if (type == 6 || type == 10 || type == 12 || type == 17 || type == 18 || type == 19 || type == 21 || type == 8// Block, EmptyStatement 
+					|| type == 24 || type == 25 || type == 30 || type == 41 || type == 46 || type == 49 || type == 50 
+					|| type == 51 || type == 53 || type == 54 || type == 56 || type == 60 || type == 61 || type == 70) {
+				//AssertStatement, BreakStatement, CatchClause, ConstructorInvocation, ContinueStatement, DoStatement
+				// ExpressionStatement, ForStatement, IfStatement, LabeledStatement, ReturnStatement, SuperConstructorInvocation
+				// SwitchCase, SwitchStatement, SynchronizedStatement, ThrowStatement, TryStatement
+				// TypeDeclarationStatement, VariableDeclarationStatement, WhileStatement, EnhancedForStatement
 				endPosition = child.getPos() - 1;
 				break;
 			}
@@ -377,86 +378,127 @@ public class HunkActionFilter {
 		for (Violation violation : violations) {
 			int violationStartLine = violation.getStartLineNum();
 			int violationEndLine = violation.getEndLineNum();
-//			int bugHunkStartLine = violation.getBugStartLineNum();
-//			int bugHunkEndLine = violation.getBugEndLineNum();
-//			int fixHunkStartLine = violation.getFixStartLineNum();
-//			int fixHunkEndLine = violation.getFixEndLineNum();
-			
-			for (HierarchicalActionSet actionSet : actionSets) {
-				int actionBugStartLine = actionSet.getBugStartLineNum();
-				if (actionBugStartLine == 0) {
-					actionBugStartLine = setLineNumbers(actionSet, prevUnit, revUnit);
-				} 
-				int actionBugEndLine = actionSet.getBugEndLineNum();
-				int actionFixStartLine = actionSet.getFixStartLineNum();
-				int actionFixEndLine = actionSet.getFixEndLineNum();
+			int bugHunkStartLine = violation.getBugStartLineNum();
+			if (bugHunkStartLine == 0) {// Null source code matched for this violation.
+//				String type = getType(violation);
+//				continue;
+			} else if (bugHunkStartLine == -1) {//
+				specialVioaltionTypes(violation, actionSets);
+//				continue;
+			} else {
+				int bugHunkEndLine = violation.getBugEndLineNum();
+				int fixHunkStartLine = violation.getFixStartLineNum();
+				int fixHunkEndLine = violation.getFixEndLineNum();
 				
-//				if (actionBugStartLine > violationEndLine && actionFixStartLine > fixHunkEndLine) break;
-
-				String actionStr = actionSet.getActionString();
-				if (actionStr.startsWith("INS")) {
-//					if (fixHunkStartLine <= actionFixStartLine && actionFixEndLine <= fixHunkEndLine) {
-//						if (actionBugStartLine != 0) {
-//							if (violationStartLine <= actionBugEndLine && violationEndLine >= actionBugStartLine) {
-//								violation.getActionSets().add(actionSet);
-//							}
-//						} else {
-////							if (isRanged(actionSet, violation)) {
-////							}
-//							if (Math.abs(violationStartLine - actionFixStartLine) <= LIMITATION_OF_LINE_NUMBERS 
-//									&& Math.abs(violationEndLine - actionFixEndLine) <= LIMITATION_OF_LINE_NUMBERS) {
-//								violation.getActionSets().add(actionSet);
-//							}
-//						}
-//					}
-					if (actionBugStartLine != 0) {
-						if (violationStartLine <= actionBugEndLine && violationEndLine >= actionBugStartLine) {
-							violation.getActionSets().add(actionSet);
+				for (HierarchicalActionSet actionSet : actionSets) {
+					int actionBugStartLine = actionSet.getBugStartLineNum();
+					if (actionBugStartLine == 0) {
+						actionBugStartLine = setLineNumbers(actionSet, prevUnit, revUnit);
+					} 
+					int actionBugEndLine = actionSet.getBugEndLineNum();
+					int actionFixStartLine = actionSet.getFixStartLineNum();
+					int actionFixEndLine = actionSet.getFixEndLineNum();
+					
+					String actionStr = actionSet.getActionString();
+					if (actionStr.startsWith("INS")) {
+						if (fixHunkStartLine <= actionFixStartLine && actionFixEndLine <= fixHunkEndLine) {
+							if (actionBugStartLine != 0) {
+								if (violationStartLine <= actionBugEndLine && violationEndLine >= actionBugStartLine) {
+									violation.getActionSets().add(actionSet);
+									continue;
+								}
+							}
+							
+							// INS with MOV actions that are not identified in previous IF predicate, and pure INS actions
+							if (violation.getBugFixStartLineNum() >= actionFixEndLine && actionFixStartLine <= violation.getBugFixEndLineNum()) {
+								violation.getActionSets().add(actionSet);
+							}
 						}
 					} else {
-//						if (isRanged(actionSet, violation)) {
-//						}
-						if (Math.abs(violationStartLine - actionFixStartLine) <= LIMITATION_OF_LINE_NUMBERS 
-								&& Math.abs(violationEndLine - actionFixEndLine) <= LIMITATION_OF_LINE_NUMBERS) {
-							violation.getActionSets().add(actionSet);
+						if (bugHunkStartLine <= actionBugStartLine && violationEndLine <= bugHunkEndLine) {
+							if (violationStartLine <= actionBugEndLine && violationEndLine >= actionBugStartLine) {
+								violation.getActionSets().add(actionSet);
+							}
 						}
 					}
-				} else {
-//					if (bugHunkStartLine <= actionBugStartLine && actionBugEndLine <= bugHunkEndLine) {
-//						if (violationStartLine <= actionBugEndLine && violationEndLine >= actionBugStartLine) {
-//							violation.getActionSets().add(actionSet);
-//						}
-//					}
-					if (violationStartLine <= actionBugEndLine && violationEndLine >= actionBugStartLine) {
-						violation.getActionSets().add(actionSet);
-					}
 				}
 			}
 			
 			if (violation.getActionSets().size() > 0) {
 				// FieldDeclaration: single insert, move, delete or update.
-				List<HierarchicalActionSet> matchedActionSets = filterActionSets(violation.getActionSets());
-				violation.getActionSets().clear();
-				violation.getActionSets().addAll(matchedActionSets);
+//				List<HierarchicalActionSet> matchedActionSets = filterActionSets(violation.getActionSets());
+//				violation.getActionSets().clear();
+//				violation.getActionSets().addAll(matchedActionSets);
 				selectedViolations.add(violation);
 			} else {
-				System.err.println("#NullMatchedGumTreeResult:"  + revFile.getName().replace("#", "/") + ":" +violation.getStartLineNum() + ":" + 
-						violation.getEndLineNum() + ":" + violation.getAlarmType());
+				System.err.println("#NullMatchedGumTreeResult:"  + revFile.getName() + ":" +violation.getStartLineNum() + ":" + 
+						violation.getEndLineNum() + ":" + violation.getViolationType());
 			}
 		}
 		return selectedViolations;
 	}
 	
+	private void specialVioaltionTypes(Violation violation, List<HierarchicalActionSet> actionSets) {
+		String type = violation.getViolationType();
+		if ("SE_NO_SUITABLE_CONSTRUCTOR".equals(type)) {// 158, 47
+			for (HierarchicalActionSet actionSet : actionSets) {
+				if (actionSet.getActionString().startsWith("UPD TypeDeclaration@@")) {
+					violation.getActionSets().add(actionSet);
+					break;
+				}
+			}
+		} else if ("CN_IDIOM".equals(type)) { // 202 23
+			//add clone method. or update clone method
+			for (HierarchicalActionSet actionSet : actionSets) {
+				if (actionSet.getActionString().startsWith("INS MethodDeclaration@@clone")) {
+//						|| actionSet.getActionString().startsWith("UPD MethodDeclaration@@clone")) {
+					violation.getActionSets().add(actionSet);
+					break;
+				}
+			}
+		} else if ("SE_NO_SERIALVERSIONID".equals(type)) {// 12 1960
+			// change superclass or interface, add field or remove @SuppressWarnings("serial"),   some are inner class
+			for (HierarchicalActionSet actionSet : actionSets) {
+				if (actionSet.getActionString().startsWith("UPD TypeDeclaration@")) {
+					violation.getActionSets().add(actionSet);
+				}
+				if (actionSet.getActionString().startsWith("INS FieldDeclaration@") && actionSet.getNode().getLabel().contains("serialVersionUID")) {
+					violation.getActionSets().add(actionSet);
+					break;
+				}
+			}
+		} else if ("SE_NO_SUITABLE_CONSTRUCTOR_FOR_EXTERNALIZATION".equals(type)) { // 175 34
+			// constructor
+			for (HierarchicalActionSet actionSet : actionSets) { 
+				if (actionSet.getActionString().startsWith("UPD MethodDeclaration@@")) {
+					violation.getActionSets().add(actionSet);
+					break;
+				}
+			}
+		} else if ("SE_COMPARATOR_SHOULD_BE_SERIALIZABLE".equals(type)) { // 89 148
+			//class, and add a field se...?
+			for (HierarchicalActionSet actionSet : actionSets) {
+				if (actionSet.getActionString().startsWith("UPD TypeDeclaration@")) {
+					violation.getActionSets().add(actionSet);
+				}
+				if (actionSet.getActionString().startsWith("INS FieldDeclaration@") && actionSet.getNode().getLabel().contains("serialVersionUID")) {
+					violation.getActionSets().add(actionSet);
+					break;
+				}
+			}
+		}
+	}
+
 	private List<HierarchicalActionSet> filterActionSets(List<HierarchicalActionSet> actionSets) {
 		List<HierarchicalActionSet> matchedActionSets = new ArrayList<>();
 		// find the update
 		HierarchicalActionSet updateActionSet = null;
-		for (HierarchicalActionSet actionSet :actionSets) {
+		for (HierarchicalActionSet actionSet : actionSets) {
 			if (actionSet.getAction() instanceof Update) {
 				updateActionSet = actionSet;
 			}
 		}
-		
+
 		if (updateActionSet != null) {
 			if (updateActionSet.getAstNodeType().equals("FieldDeclaration")) {
 				matchedActionSets.clear();
@@ -464,9 +506,67 @@ public class HunkActionFilter {
 				return matchedActionSets;
 			}
 		}
-		
+
 		return actionSets;
 	}
+	private String getType(Violation violation) {
+		String type = violation.getViolationType();
+		switch (type) {
+		case "CI_CONFUSED_INHERITANCE":// field
+			// update fieldDeclaration
+			break;
+		case "CO_ABSTRACT_SELF":
+			// java file is an interface, and delete compareTo().
+			break;
+		case "EQ_ABSTRACT_SELF":
+			// java file is an interface, and delete equals().
+			break;
+		case "SE_NO_SERIALVERSIONID":
+			// add a field: serialVersionUID
+			break;
+		case "EQ_COMPARETO_USE_OBJECT_EQUALS":
+			//Update or Delete compareTo(), Add equals()
+			break;
+		case "EQ_DOESNT_OVERRIDE_EQUALS":
+			//override equals()
+			break;
+		case "HE_SIGNATURE_DECLARES_HASHING_OF_UNHASHABLE_CLASS":
+			//remove equals()
+			break;
+		case "ME_MUTABLE_ENUM_FIELD":
+			// under enum, field add final keyword
+			break;
+		case "MF_CLASS_MASKS_FIELD":
+			// change super class or delete the field with a same name in super class.
+			break;
+		case "MS_SHOULD_BE_FINAL":
+			// add final to field
+			break;
+		case "STCAL_STATIC_SIMPLE_DATE_FORMAT_INSTANCE":
+			//remove public static final DateFormat DATE_FORMAT....  or SimpleDateFormat
+			break;
+		case "UUF_UNUSED_FIELD":
+			//remove unused fields.  not sure
+			break;
+		case "UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD":
+			//remove unused fields.  not sure
+		case "UWF_NULL_FIELD":
+			//update field, remove field
+			break;
+		case "UWF_UNWRITTEN_FIELD":
+			//field
+			break;
+		case "UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD":
+			//remove field
+			break;
+		case "VO_VOLATILE_REFERENCE_TO_ARRAY":
+			//field
+			break;
+		default:
+			break;
+		}
+		return null;
+	}
 
 	private boolean isRanged(HierarchicalActionSet actionSet, Violation violation) {
 		int actionStartLine = actionSet.getFixStartLineNum();
@@ -673,12 +773,23 @@ public class HunkActionFilter {
 				if ("EnhancedForStatement".equals(astNodeType) || "ForStatement".equals(astNodeType) 
 						|| "DoStatement".equals(astNodeType) || "WhileStatement".equals(astNodeType)
 						|| "LabeledStatement".equals(astNodeType) || "SynchronizedStatement".equals(astNodeType)
-						|| "IfStatement".equals(astNodeType) || "TryStatement".equals(astNodeType)) {
+						|| "IfStatement".equals(astNodeType) || "TryStatement".equals(astNodeType)
+						|| "MethodDeclaration".equals(astNodeType)) {
 					List<ITree> children = update.getNode().getChildren();
 					bugEndPosition = getEndPosition(children);
 					List<ITree> newChildren = newNode.getChildren();
 					fixEndPosition = getEndPosition(newChildren);
 					
+					if (bugEndPosition == 0) {
+						bugEndPosition = bugStartPosition + actionSet.getLength();
+					}
+					if (fixEndPosition == 0) {
+						fixEndPosition = fixStartPosition + newNode.getLength();
+					}
+				} else if ("TypeDeclaration".equals(astNodeType)) {
+					bugEndPosition = getClassBodyStartPosition(update.getNode());
+					fixEndPosition = getClassBodyStartPosition(newNode);
+					
 					if (bugEndPosition == 0) {
 						bugEndPosition = bugStartPosition + actionSet.getLength();
 					}
@@ -701,5 +812,27 @@ public class HunkActionFilter {
 		
 		return actionBugStartLine;
 	}
+	
+	private int getClassBodyStartPosition(ITree tree) {
+		List<ITree> children = tree.getChildren();
+		for (int i = 0, size = children.size(); i < size; i ++) {
+			ITree child = children.get(i);
+			int type = child.getType();
+			// Modifier, NormalAnnotation, MarkerAnnotation, SingleMemberAnnotation
+			if (type != 83 && type != 77 && type != 78 && type != 79
+				&& type != 5 && type != 39 && type != 43 && type != 74 && type != 75
+				&& type != 76 && type != 84 && type != 87 && type != 88) {
+				// ArrayType, PrimitiveType, SimpleType, ParameterizedType, 
+				// QualifiedType, WildcardType, UnionType, IntersectionType, NameQualifiedType
+				if (i > 0) {
+					child = children.get(i - 1);
+					return child.getPos() + child.getLength() + 1;
+				} else {
+					return child.getPos() - 1;
+				}
+			}
+		}
+		return 0;
+	}
 
 }
diff --git a/src/main/java/edu/lu/uni/serval/livestudy/Alarm.java b/src/main/java/edu/lu/uni/serval/livestudy/Alarm.java
new file mode 100644
index 0000000..a49ef12
--- /dev/null
+++ b/src/main/java/edu/lu/uni/serval/livestudy/Alarm.java
@@ -0,0 +1,33 @@
+package edu.lu.uni.serval.livestudy;
+
+public class Alarm {
+	private String alarmType;
+	private String fileName;
+	private int startLine;
+	private int endLine;
+
+	public String getAlarmType() {
+		return alarmType;
+	}
+
+	public String getFileName() {
+		return fileName;
+	}
+
+	public int getStartLine() {
+		return startLine;
+	}
+
+	public int getEndLine() {
+		return endLine;
+	}
+
+	public Alarm(String alarmType, String fileName, int startLine, int endLine) {
+		super();
+		this.alarmType = alarmType;
+		this.fileName = fileName;
+		this.startLine = startLine;
+		this.endLine = endLine;
+	}
+	
+}
diff --git a/src/main/java/edu/lu/uni/serval/livestudy/ParseViolations.java b/src/main/java/edu/lu/uni/serval/livestudy/ParseViolations.java
new file mode 100644
index 0000000..76d4b38
--- /dev/null
+++ b/src/main/java/edu/lu/uni/serval/livestudy/ParseViolations.java
@@ -0,0 +1,87 @@
+package edu.lu.uni.serval.livestudy;
+
+import java.io.File;
+import java.io.FileInputStream;
+import java.io.FileNotFoundException;
+import java.io.IOException;
+import java.util.HashMap;
+import java.util.List;
+import java.util.Map;
+import java.util.Scanner;
+
+import edu.lu.uni.serval.config.Configuration;
+import edu.lu.uni.serval.utils.FileHelper;
+
+public class ParseViolations {
+
+	public static void main(String[] args) {
+		ParseViolations parser = new ParseViolations();
+		
+		String violationFile = Configuration.ROOT_PATH + "LiveStudy/violations.list";
+		Map<String, Violation> violations = new HashMap<>();
+		violations = parser.readViolations(violationFile);
+		
+		String projectsPath = Configuration.ROOT_PATH + "LiveStudy/projects/";
+		parser.parseViolationToTokens(violations, projectsPath);
+		
+	}
+
+	public void parseViolationToTokens(Map<String, Violation> violations, String projectsPath) {
+		for (Map.Entry<String, Violation> entry : violations.entrySet()) {
+			String projectName = entry.getKey();
+			List<Alarm> alarms = entry.getValue().getAlarms();
+			List<File> javaFiles = FileHelper.getAllFiles(projectsPath + projectName, ".java");
+			
+		}
+	}
+
+	public Map<String, Violation> readViolations(String violationFile) {
+		Map<String, Violation> violations = new HashMap<>();
+		
+		FileInputStream fis = null;
+		Scanner scanner = null;
+		try {
+			fis = new FileInputStream(violationFile);
+			scanner = new Scanner(fis);
+			
+			while (scanner.hasNextLine()) {
+				//commons-math : DLS_DEAD_LOCAL_STORE : org/apache/commons/math4/dfp/Dfp.java : 2049 : 2049
+				String line = scanner.nextLine();
+				String[] elements = line.split(" : ");
+				String projectName = elements[0];
+				String alarmType = elements[1];
+				String fileName = elements[2];
+				int startLine = Integer.parseInt(elements[3]);
+				int endLine = Integer.parseInt(elements[4]);
+				
+				Alarm alarm = new Alarm(alarmType, fileName, startLine, endLine);
+				addAlarmToViolations(projectName, alarm, violations);
+			}
+		} catch (FileNotFoundException e) {
+			e.printStackTrace();
+		} finally {
+			try {
+				scanner.close();
+				fis.close();
+			} catch (IOException e) {
+				e.printStackTrace();
+			}
+		}
+		
+		return violations;
+	}
+
+	private void addAlarmToViolations(String projectName, Alarm alarm, Map<String, Violation> violations) {
+		Violation violation = null;
+		if (violations.containsKey(projectName)) {
+			violation = violations.get(projectName);
+		} else {
+			violation = new Violation(projectName);
+			violations.put(projectName, violation);
+		}
+		
+		List<Alarm> alarms = violation.getAlarms();
+		alarms.add(alarm);
+	}
+
+}
diff --git a/src/main/java/edu/lu/uni/serval/livestudy/Violation.java b/src/main/java/edu/lu/uni/serval/livestudy/Violation.java
new file mode 100644
index 0000000..e6eaa2d
--- /dev/null
+++ b/src/main/java/edu/lu/uni/serval/livestudy/Violation.java
@@ -0,0 +1,25 @@
+package edu.lu.uni.serval.livestudy;
+
+import java.util.ArrayList;
+import java.util.List;
+
+public class Violation {
+	
+	private String project;
+	private List<Alarm> alarms;
+
+	public String getProject() {
+		return project;
+	}
+
+	public List<Alarm> getAlarms() {
+		return alarms;
+	}
+
+	public Violation(String project) {
+		super();
+		this.project = project;
+		this.alarms = new ArrayList<>();
+	}
+	
+}
diff --git a/src/main/java/edu/lu/uni/serval/parameters/ParseAlarms.java b/src/main/java/edu/lu/uni/serval/parameters/ParseAlarms.java
new file mode 100644
index 0000000..fe174b6
--- /dev/null
+++ b/src/main/java/edu/lu/uni/serval/parameters/ParseAlarms.java
@@ -0,0 +1,145 @@
+package edu.lu.uni.serval.parameters;
+
+import java.io.BufferedReader;
+import java.io.File;
+import java.io.IOException;
+import java.io.StringReader;
+import java.util.ArrayList;
+import java.util.List;
+
+import com.github.gumtreediff.tree.ITree;
+
+import edu.lu.uni.serval.FixPatternParser.Tokenizer;
+import edu.lu.uni.serval.FixPatternParser.violations.Violation;
+import edu.lu.uni.serval.config.Configuration;
+import edu.lu.uni.serval.gumtree.regroup.SimpleTree;
+import edu.lu.uni.serval.gumtree.regroup.SimplifyTree;
+import edu.lu.uni.serval.utils.FileHelper;
+import edu.lu.uni.serval.violation.code.parser.ViolationSourceCodeTree;
+
+/**
+ * Prepare data for tuning parameters of deep learning models.
+ * 
+ * @author kui.liu
+ *
+ */
+public class ParseAlarms {
+
+	public static void main(String[] args) {
+		ParseAlarms parser = new ParseAlarms();
+		
+		String outputPath = Configuration.ROOT_PATH + "TuneParameters/fixedAlarmTokens.list";
+		String outputPath2 = Configuration.ROOT_PATH + "TuneParameters/EmptyStatement/fixedAlarmTokens.list";
+		FileHelper.deleteFile(outputPath);
+		FileHelper.deleteFile(outputPath2);
+		int subIndex = 5;
+		String fixedAlarmFilesPath = Configuration.GUM_TREE_INPUT + "prevFiles/";
+		String positionsFilePath = Configuration.GUM_TREE_INPUT + "positions/";
+		parser.dataPreparation(fixedAlarmFilesPath, positionsFilePath, subIndex, outputPath, outputPath2);
+		
+		outputPath = Configuration.ROOT_PATH + "TuneParameters/unfixedAlarmTokens.list";
+		outputPath2 = Configuration.ROOT_PATH + "TuneParameters/EmptyStatement/unfixedAlarmTokens.list";
+		FileHelper.deleteFile(outputPath);
+		FileHelper.deleteFile(outputPath2);
+		subIndex = 8;
+		String unfixedAlarmFilesPath = Configuration.GUM_TREE_INPUT + "unfixAlarms/";
+		String unfixedPositionsFilePath = Configuration.GUM_TREE_INPUT + "un_positions/";
+		parser.dataPreparation(unfixedAlarmFilesPath, unfixedPositionsFilePath, subIndex, outputPath, outputPath2);
+	}
+
+	public void dataPreparation(String sourceCodeFilePath, String positionFilePath, int subIndex, String outputPath, String outputPath2) {
+		StringBuilder tokensBuilder = new StringBuilder();
+		List<File> javaFiles = FileHelper.getAllFilesInCurrentDiectory(sourceCodeFilePath, ".java");
+		int counter = 0;
+		int a = 0;
+		StringBuilder emptyStatements = new StringBuilder();
+		StringBuilder sizes = new StringBuilder();
+		for (File javaFile : javaFiles) {
+			String fileName = javaFile.getName().replace(".java", ".txt");
+			fileName = fileName.substring(subIndex);
+			
+//			if (fileName.endsWith("apache-commons-configuration_8c42aa_8b26e6src#java#org#apache#commons#configuration#plist#XMLPropertyListConfiguration.txt")) {
+//				System.out.println();
+//			}
+			
+			List<Violation> violations = readViolations(positionFilePath + fileName);
+			
+			for (Violation violation : violations) {
+				int startLine = violation.getStartLineNum();
+				int endLine = violation.getEndLineNum();
+				String alarmType = violation.getViolationType();
+
+				if (endLine > startLine + 5) continue;
+
+				ViolationSourceCodeTree alarmTree = new ViolationSourceCodeTree(javaFile, startLine, endLine);
+				alarmTree.extract(alarmType);
+				List<ITree> matchedTrees = alarmTree.getViolationSourceCodeTrees();
+				if (matchedTrees.size() == 0) {
+					emptyStatements.append(alarmType + "," + fileName + "," + startLine + "," + endLine + "\n");
+					a ++;
+					continue;
+				}
+				SimpleTree simpleTree = new SimpleTree();
+				simpleTree.setLabel("Block");
+				simpleTree.setNodeType("Block");
+				List<SimpleTree> children = new ArrayList<>();
+				
+				for (ITree matchedTree : matchedTrees) {
+					SimpleTree simpleT = new SimplifyTree().canonicalizeSourceCodeTree(matchedTree, null);
+					children.add(simpleT);
+				}
+				simpleTree.setChildren(children);
+				
+				String tokens = Tokenizer.getTokensDeepFirst(simpleTree);
+				String[] tokensArray = tokens.split(" ");
+				int length = tokensArray.length;
+				sizes.append(length + "\n");
+				tokensBuilder.append(alarmType + ":" + fileName + ":" + alarmTree.getViolationFinalStartLine() + ":" + alarmTree.getViolationFinalEndLine() + ":" + tokens + "\n");
+				
+				counter ++;
+				if (counter % 10000 == 0) {
+					FileHelper.outputToFile(outputPath, tokensBuilder, true);
+					tokensBuilder.setLength(0);
+				}
+			}
+		}
+
+		System.out.println("Volidated Instances: " + counter);
+		System.out.println("Empty Instances: " + a);
+		FileHelper.outputToFile(outputPath2, emptyStatements, false);
+		FileHelper.outputToFile(outputPath.replace(".list", "Sizes.csv"), sizes, false);
+		FileHelper.outputToFile(outputPath, tokensBuilder, true);
+	}
+
+	private List<Violation> readViolations(String file) {
+		List<Violation> violations = new ArrayList<>();
+		
+		String fileContent = FileHelper.readFile(file);
+		BufferedReader reader = null;
+		reader = new BufferedReader(new StringReader(fileContent));
+		String line = null;
+		try {
+			while ((line = reader.readLine()) != null) {
+				String[] positionStr = line.split(":");
+				int startLine = Integer.parseInt(positionStr[1]);
+				int endLine = Integer.parseInt(positionStr[2]);
+				
+				if (startLine == -1 || endLine == -1) {
+					continue;
+				}
+				String alarmType = positionStr[0];
+				Violation violation = new Violation(startLine, endLine, alarmType);
+				violations.add(violation);
+			}
+		} catch (IOException e) {
+			e.printStackTrace();
+		} finally {
+			try {
+				reader.close();
+			} catch (IOException e) {
+				e.printStackTrace();
+			}
+		}
+		return violations;
+	}
+}
diff --git a/src/main/java/edu/lu/uni/serval/statistics/Statistic.java b/src/main/java/edu/lu/uni/serval/statistics/Statistic.java
index c5a5bc9..3bfb754 100644
--- a/src/main/java/edu/lu/uni/serval/statistics/Statistic.java
+++ b/src/main/java/edu/lu/uni/serval/statistics/Statistic.java
@@ -48,8 +48,8 @@ public class Statistic {
 		/**
 		 * Do statistics from two files: 
 		 */
-		statistics("../FPM_Violations/RQ1/all-leafnodes-per-project-vtype.csv", "");
-		statistics("../FPM_Violations/RQ1/distinct-fixed-summary-per-project-vtype.csv", "Fixed");
+//		statistics("../FPM_Violations/RQ1/all-leafnodes-per-project-vtype.csv", "");
+//		statistics("../FPM_Violations/RQ1/distinct-fixed-summary-per-project-vtype.csv", "Fixed");
 //		fixedVSunfixed();
 		
 		String statistic = "../FPM_Violations/OUTPUT";
@@ -64,34 +64,39 @@ public class Statistic {
 		int largeHunk = 0;
 		int nullSourceCode = 0;
 		int noStatementChanges = 0;
-		int IllegalV = 0;
+		int nullDiffentry = 0;
+		int TestingInfo = 0;
+		int i = 0;
 		for (File file : files) {
 			if (file.getName().startsWith("test")) continue;
 			String content = FileHelper.readFile(file);
 			BufferedReader reader = new BufferedReader(new StringReader(content));
 			String line = null;
+			i ++;
 			try {
 				while ((line = reader.readLine()) !=  null) {
-					if (line.startsWith("test")) {
+					if (line.startsWith("TestViolations")) {
 						testAlarms += Integer.parseInt(line.substring(line.lastIndexOf(":") + 1).trim());
-					} else if (line.startsWith("nullGum")) {
+					} else if (line.startsWith("NullGumTreeResults")) {
 						nullGumTreeResults += Integer.parseInt(line.substring(line.lastIndexOf(":") + 1).trim());
-					} else if (line.startsWith("nullMap")) {
-						nullMappingGumTreeResults += Integer.parseInt(line.substring(line.lastIndexOf(":") + 1).trim());
-					} else if (line.startsWith("pure")) {
-						pureDeletion += Integer.parseInt(line.substring(line.lastIndexOf(":") + 1).trim());
-					} else if (line.startsWith("Time")) {
-						timeout += Integer.parseInt(line.substring(line.lastIndexOf(":") + 1).trim());
-					} else if (line.startsWith("noSourceCodeChanges")) {
+					} else if (line.startsWith("NoSourceCodeChanges")) {
 						noSourceCodeChagnes += Integer.parseInt(line.substring(line.lastIndexOf(":") + 1).trim());
-					} else if (line.startsWith("largeHunk")) {
-						largeHunk += Integer.parseInt(line.substring(line.lastIndexOf(":") + 1).trim());
-					} else if (line.startsWith("nullSourceCode")) {
-						nullSourceCode += Integer.parseInt(line.substring(line.lastIndexOf(":") + 1).trim());
-					} else if (line.startsWith("noStatementChanges")) {
+					} else if (line.startsWith("NoStatementChanges")) {
 						noStatementChanges += Integer.parseInt(line.substring(line.lastIndexOf(":") + 1).trim());
-					} else if (line.startsWith("IllegalV")) {
-						IllegalV +=Integer.parseInt(line.substring(line.lastIndexOf(":") + 1).trim());
+					} else if (line.startsWith("NullDiffEntry")) {
+						nullDiffentry += Integer.parseInt(line.substring(line.lastIndexOf(":") + 1).trim());
+					} else if (line.startsWith("NullMatchedGumTreeResults")) {
+						nullMappingGumTreeResults += Integer.parseInt(line.substring(line.lastIndexOf(":") + 1).trim());
+					} else if (line.startsWith("PureDeletion")) {
+						pureDeletion += Integer.parseInt(line.substring(line.lastIndexOf(":") + 1).trim());
+					} else if (line.startsWith("LargeHunk")) {
+						largeHunk += Integer.parseInt(line.substring(line.lastIndexOf(":") + 1).trim());
+					} else if (line.startsWith("NullSourceCode")) {
+						nullSourceCode += Integer.parseInt(line.substring(line.lastIndexOf(":") + 1).trim());
+					} else if (line.startsWith("Timeout")) {
+						timeout += Integer.parseInt(line.substring(line.lastIndexOf(":") + 1).trim());
+					} else if (line.startsWith("TestingInfo")) {
+						TestingInfo +=Integer.parseInt(line.substring(line.lastIndexOf(":") + 1).trim());
 					}
 				}
 			} catch (IOException e) {
@@ -104,34 +109,70 @@ public class Statistic {
 				}
 			}
 		}
+		// 22280, 23275
+//		Statistics:
+//		TestViolation: 4682
+//		NullGumTreeResults: 0
+//			NoSourceCodeChange: 5995
+//		NoStatementChange: 0
+//			NullDiffEntry: 6450
+//			NullMatchedGumTreeResult: 15675
+//			PureDeletion: 15740
+//			LargeHunk: 13521
+//		NullSourceCode: 0
+//		Timeout: 7205
+//			TestingInfo: 8703
+//		62231  22634
+//		#PureDeletion1: 16864
+//		#NullMatchedGumTreeResult: 17511
+//		#NullDiffEntry: 6986
+//		#LargeHunk: 14625
+//		#NoSourceCodeChange: 7010
+//		#TestingInfo: 9071
+//		#TestViolation: 4682
+//		#Timeout: 7205
+//		67090  22634
 		
-//		TestAlarms: 5175
-//		nullGumTreeResults: 13449
-//		nullMappingGumTreeResults: 33010
-//		pureDeletion: 7598
-//		Timeout: 263
-		
-//			Statistics:
-//			TestAlarms: 5696
-//			nullGumTreeResults: 0
-//			nullMappingGumTreeResults: 29056   29078
-//			pureDeletion: 40728
-//			Timeout: 135
-//			noSourceCodeChange: 7496
-//			largeHunk: 2584
-//			nullSourceCode: 0
-//			noStatementChanges: 7567
-//			IllegalV: 1194
-		System.out.println("\n\nStatistics:\nTestAlarms: " + testAlarms);
-		System.out.println("nullGumTreeResults: " + nullGumTreeResults);
-		System.out.println("nullMappingGumTreeResults: " + nullMappingGumTreeResults);
-		System.out.println("pureDeletion: " + pureDeletion);
+		System.out.println(i);
+		System.out.println("\n\nStatistics:\nTestViolation: " + testAlarms);
+		System.out.println("NullGumTreeResults: " + nullGumTreeResults);
+		System.out.println("NoSourceCodeChange: " + noSourceCodeChagnes);
+		System.out.println("NoStatementChange: " + noStatementChanges);
+		System.out.println("NullDiffEntry: " + nullDiffentry);
+		System.out.println("NullMatchedGumTreeResult: " + nullMappingGumTreeResults);
+		System.out.println("PureDeletion: " + pureDeletion);
+		System.out.println("LargeHunk: " + largeHunk);
+		System.out.println("NullSourceCode: " + nullSourceCode);
 		System.out.println("Timeout: " + timeout);
-		System.out.println("noSourceCodeChange: " + noSourceCodeChagnes);
-		System.out.println("largeHunk: " + largeHunk);
-		System.out.println("nullSourceCode: " + nullSourceCode);
-		System.out.println("noStatementChanges: " + noStatementChanges);
-		System.out.println("IllegalV: " + IllegalV);
+		System.out.println("TestingInfo: " + TestingInfo);
+		System.out.println(testAlarms + nullGumTreeResults + noSourceCodeChagnes + noStatementChanges +
+				nullDiffentry + nullMappingGumTreeResults + largeHunk + nullSourceCode + timeout + TestingInfo);
+		
+		
+		Map<String, Integer> types = new HashMap<>();
+		FileInputStream fis = new FileInputStream("../FPM_Violations/OAR.FPM.4222170.stderr");
+		Scanner scanner = new Scanner(fis);
+		while (scanner.hasNextLine()) {
+			String line = scanner.nextLine();
+			if (line.startsWith("## OAR [")) break;
+			String type = line.substring(0, line.indexOf(":"));
+			if (types.containsKey(type)) {
+				types.put(type, types.get(type)  + 1);
+			} else {
+				types.put(type, 1);
+			}
+		}
+		scanner.close();
+		fis.close();
+		
+		int sum = 0;
+		for (Map.Entry<String, Integer> entry : types.entrySet()) {
+			System.out.println(entry.getKey() + ": " + entry.getValue());
+			if (!entry.getKey().startsWith("#PureDeletion")) {
+				sum += entry.getValue();
+			}
+		}
+		System.out.println(sum);
 	}
 
 	public static void statistics(String fileName, String type) throws IOException {
diff --git a/src/main/java/edu/lu/uni/serval/statistics/UnparsedFiles.java b/src/main/java/edu/lu/uni/serval/statistics/UnparsedFiles.java
new file mode 100644
index 0000000..a139fb0
--- /dev/null
+++ b/src/main/java/edu/lu/uni/serval/statistics/UnparsedFiles.java
@@ -0,0 +1,55 @@
+package edu.lu.uni.serval.statistics;
+
+import java.io.FileInputStream;
+import java.io.IOException;
+import java.util.ArrayList;
+import java.util.List;
+import java.util.Scanner;
+
+import edu.lu.uni.serval.FixPatternParser.violations.Violation;
+import edu.lu.uni.serval.utils.FileHelper;
+
+public class UnparsedFiles {
+
+	public static void main(String[] args) throws IOException {
+		FileInputStream fis = new FileInputStream("../FPM_Violations/OAR.FPM.4221129.stderr");
+		Scanner scanner = new Scanner(fis);
+		List<Violation> vList = new ArrayList<>();
+		String test1 = "";
+		String test2 = "";
+		String test3 = "";
+		int i = 0;
+		while (scanner.hasNextLine()) {
+			String line = scanner.nextLine();
+			String[] elements = line.split(":");
+			Violation v = new Violation(Integer.parseInt(elements[2]), Integer.parseInt(elements[3]), elements[4]);
+			v.setFileName(elements[1]);
+			if (vList.contains(v)) {
+				i ++;
+//				System.out.println(elements[0]);				
+			} else {
+				vList.add(v);
+			}
+			if (line.startsWith("#TestViolation:")) {
+//				System.out.println(line);
+				if (elements[1].toLowerCase().contains("/test/")) {
+					test1 += elements[1] + "\n";
+				} else if (elements[1].toLowerCase().contains("tests/")) {
+					test2 += elements[1] + "\n";
+				} else {
+					test3 += elements[1] + "\n";
+				}
+			}
+		}
+		
+		scanner.close();
+		fis.close();
+		
+		System.out.println(vList.size());
+		System.out.println(i);
+		FileHelper.outputToFile("logs/test1.txt", test1, false);
+		FileHelper.outputToFile("logs/test2.txt", test2, false);
+		FileHelper.outputToFile("logs/test3.txt", test3, false);
+	}
+
+}
diff --git a/src/main/java/edu/lu/uni/serval/violation/code/parser/AlarmTree.java b/src/main/java/edu/lu/uni/serval/violation/code/parser/AlarmTree.java
deleted file mode 100644
index b714eea..0000000
--- a/src/main/java/edu/lu/uni/serval/violation/code/parser/AlarmTree.java
+++ /dev/null
@@ -1,264 +0,0 @@
-package edu.lu.uni.serval.violation.code.parser;
-
-import java.io.File;
-import java.util.ArrayList;
-import java.util.List;
-
-import org.eclipse.jdt.core.dom.CompilationUnit;
-
-import com.github.gumtreediff.tree.ITree;
-
-import edu.lu.uni.serval.FixPatternParser.CUCreator;
-import edu.lu.uni.serval.gumtree.GumTreeGenerator;
-import edu.lu.uni.serval.gumtree.GumTreeGenerator.GumTreeType;
-
-public class AlarmTree {
-
-	private File file;
-	private int alarmStartLine;
-	private int alarmEndLine;
-	private CompilationUnit cUnit;
-	
-	private int alarmFinalStartLine;
-	private int alarmFinalEndLine;
-	
-	private List<ITree> matchedTrees = new ArrayList<>();
-	
-	public AlarmTree(File file, int startLine, int endLine) {
-		super();
-		this.file = file;
-		this.alarmStartLine = startLine;
-		this.alarmEndLine = endLine;
-		
-		CUCreator cuCreator = new CUCreator();
-		this.cUnit = cuCreator.createCompilationUnit(this.file);
-	}
-	
-	public AlarmTree(String fileName, int startLine, int endLine) {
-		this(new File(fileName), startLine, endLine);
-	}
-	
-	public List<ITree> getAlarmTrees() {
-		return this.matchedTrees;
-	}
-	
-	public int getAlarmFinalStartLine() {
-		return alarmFinalStartLine;
-	}
-
-	public int getAlarmFinalEndLine() {
-		return alarmFinalEndLine;
-	}
-	
-	public void extract() {
-		ITree rootTree = new GumTreeGenerator().generateITreeForJavaFile(file, GumTreeType.EXP_JDT);
-		
-		List<ITree> trees = rootTree.getChildren();
-		for (ITree tree : trees) {
-			int startPosition = tree.getPos();
-			int startLine = cUnit.getLineNumber(startPosition);
-			if (startLine > alarmEndLine) {
-				break;
-			}
-			
-			int endPosition = startPosition + tree.getLength();
-			int endLine = cUnit.getLineNumber(endPosition - 1);
-			if (endLine < alarmStartLine) continue;
-			
-			matchTrees(tree.getChildren());
-		}
-		
-		int size = matchedTrees.size();
-		if (size > 0) {
-			this.alarmFinalStartLine = cUnit.getLineNumber(this.matchedTrees.get(0).getPos());
-			ITree lastTree = matchedTrees.get(size - 1);
-			this.alarmFinalEndLine = cUnit.getLineNumber(lastTree.getPos() + lastTree.getLength());
-		} else {
-			System.err.println(this.file.getName() + "===" + this.alarmStartLine + ":" + this.alarmEndLine);
-		}
-		
-	}
-
-	public void extract(String type) {
-		ITree rootTree = new GumTreeGenerator().generateITreeForJavaFile(file, GumTreeType.EXP_JDT);
-		
-		List<ITree> trees = rootTree.getChildren();
-		for (ITree tree : trees) {
-			int startPosition = tree.getPos();
-			int startLine = cUnit.getLineNumber(startPosition);
-			if (startLine > alarmEndLine) {
-				break;
-			}
-			
-			int endPosition = startPosition + tree.getLength();
-			int endLine = cUnit.getLineNumber(endPosition - 1);
-			if (endLine < alarmStartLine) continue;
-			
-			matchTrees(tree.getChildren());
-		}
-		
-		int size = matchedTrees.size();
-		if (size > 0) {
-			this.alarmFinalStartLine = cUnit.getLineNumber(this.matchedTrees.get(0).getPos());
-			ITree lastTree = matchedTrees.get(size - 1);
-			this.alarmFinalEndLine = cUnit.getLineNumber(lastTree.getPos() + lastTree.getLength());
-		} else {
-			System.err.println(type);
-			System.err.println(this.file.getName() + "===" + this.alarmStartLine + ":" + this.alarmEndLine);
-		}
-		
-	}
-
-	private void matchTrees(List<ITree> trees) {
-		for (ITree tree : trees) {
-			int startPosition = tree.getPos();
-			int startLine = cUnit.getLineNumber(startPosition);
-			if (startLine > alarmEndLine) {
-				break;
-			} 
-			
-			int endPosition = startPosition + tree.getLength();
-			int endLine = cUnit.getLineNumber(endPosition);
-			if (endLine < alarmStartLine) continue;
-			
-			if (endLine == alarmEndLine) {
-				if (tree.getType() == 31) { // MethodDeclaration
-					matchTrees(tree.getChildren());
-				} else if (isStatement(tree)) {
-					addToMatchedTrees(tree);
-				} else {
-					ITree parent = getParentStatement(tree);
-					if (parent == null) {
-						if (tree.getType() == 8) { // 8: Block
-							matchTrees(tree.getChildren());
-						}
-						continue;
-					}
-					addToMatchedTrees(parent);
-				}
-				continue;
-			}
-			
-			if (startLine >= alarmStartLine) {
-				if (isStatement(tree)) {
-					addToMatchedTrees(tree);
-				} else {
-					ITree parent = getParentStatement(tree);
-					if (parent == null) {
-						if (tree.getType() == 8) {
-							matchTrees(tree.getChildren());
-						}
-						continue;
-					}
-					addToMatchedTrees(parent);
-				}
-			} else {
-//				if (tree.getType() == 14) {
-//					ITree parent = getParentStatement(tree);
-//					if (parent == null) {
-//						matchTrees(tree.getChildren());
-//					} else {
-//						addToMatchedTrees(parent);
-//					}
-//				} else {
-//					matchTrees(tree.getChildren());
-//				}
-				matchTrees(tree.getChildren());
-			}
-		}
-	}
-
-	private void addToMatchedTrees(ITree tree) {
-		if (!matchedTrees.contains(tree)) {
-			/*
-			 *  TODO with the same parent, or the sub trees.
-			 *  	 In the same method body.
-			 */
-			matchedTrees.add(tree);
-		}
-		if (containsBlockStatement(tree)) {
-			int endLine = cUnit.getLineNumber(tree.getPos() + tree.getLength());
-			if (endLine > alarmEndLine) {
-				tree = removeBlock(tree);
-			}
-		}
-	}
-
-	private ITree removeBlock(ITree tree) {
-		List<ITree> oldChildren = tree.getChildren();
-		List<ITree> newChildren = new ArrayList<>();
-		for (ITree child : oldChildren) {
-			int startPosition = child.getPos();
-			int startLine = cUnit.getLineNumber(startPosition);
-			if (startLine > alarmEndLine) {
-				break;
-			} 
-			int endPosition = startPosition + child.getLength();
-			int endLine = cUnit.getLineNumber(endPosition);
-			if (endLine > this.alarmEndLine) {
-				if (child.getType() == 8 || containsBlockStatement(child)) { // 8: Block
-					child = removeBlock(child);
-					if (child.getChildren().size() == 0) {
-						continue;
-					}
-				}
-			}
-			newChildren.add(child);
-		}
-		tree.setChildren(newChildren);
-		return tree;
-	}
-
-	private ITree getParentStatement(ITree tree) {
-		ITree parent = tree;
-		do {
-			parent = parent.getParent();
-			if (parent == null) {
-				return null;
-			}
-			
-			int type = parent.getType();
-			if (type == 1 || type == 31 || type == 55 || type == 71) {
-				// AnonymousClassDeclaration
-				// MethodDeclaration  Initializer (type == 28)
-				// TypeDeclaration
-				return null;
-			}
-		} while (!isStatement(parent));
-
-		return parent;
-	}
-
-	private boolean isStatement(ITree tree) {
-		int type = tree.getType(); // 8 Block
-		if (type == 6) return true;  // AssertStatement
-		if (type == 10) return true; // BreakStatement
-		if (type == 17) return true; // ConstructorInvocation
-		if (type == 18) return true; // ContinueStatement
-		if (type == 21) return true; // ExpressionStatement
-		if (type == 23) return true; // FieldDeclaration
-		if (type == 41) return true; // ReturnStatement
-		if (type == 46) return true; // SuperConstructorInvocation
-		if (type == 49) return true; // SwitchCase
-		if (type == 53) return true; // ThrowStatement
-		if (type == 56) return true; // TypeDeclarationStatement
-		if (type == 60) return true; // VariableDeclarationStatement
-		if (containsBlockStatement(tree)) return true;
-		return false;
-	}
-
-	private boolean containsBlockStatement(ITree tree) {
-		int type = tree.getType();
-		if (type == 12) return true; // catchClause
-		if (type == 19) return true; // DoStatement
-		if (type == 24) return true; // ForStatement
-		if (type == 25) return true; // IfStatement
-		if (type == 30) return true; // LabeledStatement
-		if (type == 50) return true; // SwitchStatement
-		if (type == 51) return true; // SynchronizedStatement
-		if (type == 54) return true; // TryStatement
-		if (type == 61) return true; // WhileStatement
-		if (type == 70) return true; // EnhancedForStatement
-		return false;
-	}
-}
diff --git a/src/main/java/edu/lu/uni/serval/violation/code/parser/Test.java b/src/main/java/edu/lu/uni/serval/violation/code/parser/Test.java
new file mode 100644
index 0000000..990c973
--- /dev/null
+++ b/src/main/java/edu/lu/uni/serval/violation/code/parser/Test.java
@@ -0,0 +1,211 @@
+package edu.lu.uni.serval.violation.code.parser;
+
+import java.io.BufferedReader;
+import java.io.File;
+import java.io.FileInputStream;
+import java.io.IOException;
+import java.io.StringReader;
+import java.util.ArrayList;
+import java.util.HashMap;
+import java.util.List;
+import java.util.Map;
+import java.util.Scanner;
+
+import edu.lu.uni.serval.diffentry.DiffEntryHunk;
+import edu.lu.uni.serval.diffentry.DiffEntryReader;
+import edu.lu.uni.serval.utils.FileHelper;
+import edu.lu.uni.serval.utils.ListSorter;
+
+public class Test {
+
+	public static void main(String[] args) throws IOException {
+//		testV1();
+//		testV2();
+//		testV3("../FPM_Violations/OAR.FPM.4222152.stderr", "OUTPUT/unparsedviolations.txt");
+		testV4("../FPM_Violations/OAR.FPM.4222152.stderr");
+	}
+
+	private static void testV4(String inputFile) throws IOException {
+		FileInputStream fis = new FileInputStream(inputFile);
+		Scanner scanner = new Scanner(fis);
+		StringBuilder builder = new StringBuilder();
+		
+//		boolean isDiff = false;
+		
+		while (scanner.hasNextLine()) {
+			String line = scanner.nextLine();
+			if (line.startsWith("## OAR")) break;
+//			if (line.startsWith("#NullDiffEntry")) {
+//				isDiff = true;
+//				continue;
+//			} else if (line.startsWith("#")) {
+//				isDiff = false;
+//				continue;
+//			}
+//			if (!isDiff) continue;
+			
+			String[] elements = line.trim().split(":");
+			String type = elements[0];
+			
+			
+			if (type.equals("#NullDiffEntry")) {
+				List<DiffEntryHunk> diffentryHunks = new DiffEntryReader().readHunks2(new File("/Users/kui.liu/Public/git/FPM_Violations/GumTreeInput/diffentries/" + elements[1].replace(".java", ".txt").trim()));
+				int startLine = Integer.parseInt(elements[2].trim());
+				int endLine = Integer.parseInt(elements[3].trim());
+				for (DiffEntryHunk hunk : diffentryHunks) {
+					int hunkStart = hunk.getBugLineStartNum();
+					int hunkEnd = hunk.getBugRange() + hunkStart - 1;
+					
+					if (startLine <= hunkEnd && hunkStart <= endLine) {
+						builder.append("vi " + elements[1].replace(".java", ".txt") + "\n : " + elements[2] + " : " + elements[3] + " : " + elements[4] + "\n");
+					}
+				}
+			}
+//			List<DiffEntryHunk> diffentryHunks = new DiffEntryReader().readHunks2(new File("/Users/kui.liu/Public/git/FPM_Violations/GumTreeInput/diffentries/" + elements[0].replace(".java", ".txt").trim()));
+//			int startLine = Integer.parseInt(elements[1].trim());
+//			int endLine = Integer.parseInt(elements[2].trim());
+//			for (DiffEntryHunk hunk : diffentryHunks) {
+//				int hunkStart = hunk.getBugLineStartNum();
+//				int hunkEnd = hunk.getBugRange() + hunkStart - 1;
+//				
+//				if (startLine <= hunkEnd && hunkStart <= endLine) {
+//					builder.append("vi " + elements[0].replace(".java", ".txt") + "\n : " + elements[1] + " : " + elements[2]  + "\n"); //+ " : " + elements[4] 
+//				}
+//			}
+		}
+		scanner.close();
+		fis.close();
+		
+		FileHelper.outputToFile("Dataset/a.txt", builder, false);
+	}
+
+	private static void testV3(String inputFile, String outputFile) throws IOException {
+		FileInputStream fis = new FileInputStream(inputFile);
+		Scanner scanner = new Scanner(fis);
+		
+		Map<String, List<String>> types = new HashMap<>();
+		while (scanner.hasNextLine()) {
+			String line = scanner.nextLine();
+			if (line.startsWith("## OAR")) break;
+			String[] elements = line.split(":");
+			String type = elements[0];
+			
+			if (types.containsKey(type)) {
+				types.get(type).add(elements[1] + " : " + elements[2] + " : " + elements[3] + " : " + elements[4]);
+			} else {
+				List<String> files = new ArrayList<>();
+				files.add(elements[1] + " : " + elements[2] + " : " + elements[3] + " : " + elements[4]);
+				types.put(type, files);
+			}
+		}
+		scanner.close();
+		fis.close();
+		
+		StringBuilder builder = new StringBuilder();
+		for (Map.Entry<String, List<String>> entry : types.entrySet()) {
+			System.out.println(entry.getKey());
+			builder.append(entry.getKey() + "\n");
+			List<String> files = entry.getValue();
+			for (String file : files) {
+				builder.append("    " + file + "\n");
+			}
+		}
+		FileHelper.outputToFile(outputFile, builder, false);
+	}
+
+	public static void testV2() throws IOException {
+		String content = FileHelper.readFile("logs/testV2.txt");
+		BufferedReader reader = new BufferedReader(new StringReader(content));
+		String line = null;
+		Map<String, List<String>> types = new HashMap<>();
+		while ((line = reader.readLine()) != null) {
+			String[] elements = line.split(" : ");
+			String type = elements[0];
+			
+			if (types.containsKey(type)) {
+				types.get(type).add(elements[1] + " : " + elements[2] + " : " + elements[3]);
+			} else {
+				List<String> files = new ArrayList<>();
+				files.add(elements[1] + " : " + elements[2] + " : " + elements[3]);
+				types.put(type, files);
+			}
+		}
+		reader.close();
+		
+		StringBuilder builder = new StringBuilder();
+		for (Map.Entry<String, List<String>> entry : types.entrySet()) {
+			System.out.println(entry.getKey());
+			builder.append(entry.getKey() + "\n");
+			List<String> files = entry.getValue();
+			for (String file : files) {
+				builder.append(file + "\n");
+			}
+		}
+		FileHelper.outputToFile("logs/MultiV.txt", builder, false);
+	}
+
+	public static void testV1() throws IOException {
+		Map<String, Map<String, List<String>>> map = new HashMap<>();
+		String content = FileHelper.readFile("logs/testV1.txt");
+		BufferedReader reader = new BufferedReader(new StringReader(content));
+		String line = null;
+		List<String> types1 = new ArrayList<>();
+		List<String> types2 = new ArrayList<>();
+		while ((line = reader.readLine()) != null) {
+			String[] elements = line.split(" : ");
+			String type = elements[0];
+			String startLine = elements[2];
+			if (!"-1".equals(startLine)) {
+				startLine = "1";
+				if (!types1.contains(type)) {
+					types1.add(type);
+				}
+			} else {
+				if (!types2.contains(type)) {
+					types2.add(type);
+				}
+			}
+			if (map.containsKey(startLine)) {
+				Map<String, List<String>> types = map.get(startLine);
+				if (types.containsKey(type)) {
+					List<String> files = types.get(type);
+					files.add(elements[1] + "\n" + elements[2] + " : " + elements[3]);
+				} else {
+					List<String> files = new ArrayList<>();
+					files.add(elements[1] + "\n" + elements[2] + " : " + elements[3]);
+					types.put(type, files);
+				}
+			} else {
+				Map<String, List<String>> types  = new HashMap<>();
+				List<String> files = new ArrayList<>();
+				files.add(elements[1] + "\n" + elements[2] + " : " + elements[3]);
+				types.put(type, files);
+				map.put(startLine, types);
+			}
+		}
+		reader.close();
+		
+		StringBuilder builder = new StringBuilder();
+		for (Map.Entry<String, Map<String, List<String>>> entry : map.entrySet()) {
+			builder.append(entry.getKey() + "\n");
+			List<String> tList = null;
+			if (entry.getKey().equals("1")) {
+				tList = types1;
+			} else {
+				tList = types2;
+			}
+			ListSorter<String> sorter = new ListSorter<String>(tList);
+			tList = sorter.sortAscending();
+			Map<String, List<String>> types = entry.getValue();
+			for (String type : tList) {
+				builder.append("    " + type + "\n");
+				List<String> files = types.get(type);
+				for (String file : files) {
+					builder.append(file + "\n");
+				}
+			}
+		}
+		FileHelper.outputToFile("logs/NullV.txt", builder, false);
+	}
+	
+}
diff --git a/src/main/java/edu/lu/uni/serval/violation/code/parser/ViolationCodeParser.java b/src/main/java/edu/lu/uni/serval/violation/code/parser/ViolationCodeParser.java
index 27cbd58..e42f5fc 100644
--- a/src/main/java/edu/lu/uni/serval/violation/code/parser/ViolationCodeParser.java
+++ b/src/main/java/edu/lu/uni/serval/violation/code/parser/ViolationCodeParser.java
@@ -29,12 +29,12 @@ public class ViolationCodeParser {
 		 * 		Violation code files.
 		 * 		Position files.
 		 */
-		String fixedViolationFilesPath = Configuration.GUM_TREE_INPUT + "prevFiles/";
-		String positionsFilePath = Configuration.GUM_TREE_INPUT + "positions/";
-		int subIndex = 5;
-		String outputPath = Configuration.ROOT_PATH + "Alarms_tokens/fixedAlarms.list";
-		FileHelper.deleteFile(outputPath);
-		new ViolationCodeParser().parse(fixedViolationFilesPath, positionsFilePath, subIndex, outputPath);
+//		String fixedViolationFilesPath = Configuration.GUM_TREE_INPUT + "prevFiles/";
+//		String positionsFilePath = Configuration.GUM_TREE_INPUT + "positions/";
+//		int subIndex = 5;
+//		String outputPath = Configuration.ROOT_PATH + "Alarms_tokens/fixedAlarms.list";
+//		FileHelper.deleteFile(outputPath);
+//		new ViolationCodeParser().parse(fixedViolationFilesPath, positionsFilePath, subIndex, outputPath);
 			
 		/*
 		 * UnFixed violations:
@@ -43,10 +43,10 @@ public class ViolationCodeParser {
 		 */
 		String unfixedViolationFilesPath = Configuration.GUM_TREE_INPUT + "unfixAlarms/";
 		String un_positionsFilePath = Configuration.GUM_TREE_INPUT + "un_positions/";
-		subIndex = 8;
-		outputPath = Configuration.ROOT_PATH + "Alarms_tokens/unfixedAlarms.list";
-		FileHelper.deleteFile(outputPath);
-		new ViolationCodeParser().parse(unfixedViolationFilesPath, un_positionsFilePath, subIndex, outputPath);
+		int subIndex2 = 8;
+		String outputPath2 = Configuration.ROOT_PATH + "Alarms_tokens/unfixedAlarms.list";
+		FileHelper.deleteFile(outputPath2);
+		new ViolationCodeParser().parse(unfixedViolationFilesPath, un_positionsFilePath, subIndex2, outputPath2);
 	}
 
 	public void parse(String alarmFilesPath, String positionFilesPath, int subIndex, String outputPath) {
@@ -64,16 +64,16 @@ public class ViolationCodeParser {
 			for (Violation violation : violations) {
 				int startLine = violation.getStartLineNum();
 				int endLine = violation.getEndLineNum();
-				String alarmType = violation.getAlarmType();
+				String alarmType = violation.getViolationType();
 				
 //				if (endLine > startLine + 5) {
 //					log.warn("#Large_Violation_Hunk: " + fileName.replace("#", "/").replace(".txt", ".java") + ":" + startLine + ":" + endLine + ":" + alarmType);
 //					continue;
 //				}
 				
-				AlarmTree alarmTree = new AlarmTree(javaFile, startLine, endLine);
+				ViolationSourceCodeTree alarmTree = new ViolationSourceCodeTree(javaFile, startLine, endLine);
 				alarmTree.extract();
-				List<ITree> matchedTrees = alarmTree.getAlarmTrees();
+				List<ITree> matchedTrees = alarmTree.getViolationSourceCodeTrees();
 				if (matchedTrees.size() == 0) {
 					System.out.println(fileName + " == " + startLine + " : " + endLine);
 					a ++;
@@ -95,7 +95,7 @@ public class ViolationCodeParser {
 				String[] tokensArray = tokens.split(" ");
 				int length = tokensArray.length;
 				if (length > maxLength) maxLength = length;
-				tokensBuilder.append(alarmType + ":" + fileName + ":" + alarmTree.getAlarmFinalStartLine() + ":" + alarmTree.getAlarmFinalEndLine() + ":" + tokens + "\n");
+				tokensBuilder.append(alarmType + ":" + fileName + ":" + alarmTree.getViolationFinalStartLine() + ":" + alarmTree.getViolationFinalEndLine() + ":" + tokens + "\n");
 				counter ++;
 				if (counter % 5000 == 0) {
 					FileHelper.outputToFile(outputPath, tokensBuilder, true);
diff --git a/src/main/java/edu/lu/uni/serval/violation/code/parser/ViolationSourceCodeTree.java b/src/main/java/edu/lu/uni/serval/violation/code/parser/ViolationSourceCodeTree.java
new file mode 100644
index 0000000..32b83ae
--- /dev/null
+++ b/src/main/java/edu/lu/uni/serval/violation/code/parser/ViolationSourceCodeTree.java
@@ -0,0 +1,420 @@
+package edu.lu.uni.serval.violation.code.parser;
+
+import java.io.File;
+import java.util.ArrayList;
+import java.util.List;
+
+import org.eclipse.jdt.core.dom.CompilationUnit;
+
+import com.github.gumtreediff.tree.ITree;
+
+import edu.lu.uni.serval.FixPatternParser.CUCreator;
+import edu.lu.uni.serval.gumtree.GumTreeGenerator;
+import edu.lu.uni.serval.gumtree.GumTreeGenerator.GumTreeType;
+
+public class ViolationSourceCodeTree {
+
+	private File file;
+	private int violationStartLine;
+	private int violationEndLine;
+	private CompilationUnit cUnit;
+	
+	private int violationFinalStartLine = 0;
+	private int violationFinalEndLine;
+	
+	private List<ITree> matchedTrees = new ArrayList<>();
+	
+	public ViolationSourceCodeTree(File file, int violationStartLine, int violationEndLine) {
+		super();
+		this.file = file;
+		this.violationStartLine = violationStartLine;
+		this.violationEndLine = violationEndLine;
+		
+		CUCreator cuCreator = new CUCreator();
+		this.cUnit = cuCreator.createCompilationUnit(this.file);
+	}
+	
+	public ViolationSourceCodeTree(String fileName, int violationStartLine, int violationEndLine) {
+		this(new File(fileName), violationStartLine, violationEndLine);
+	}
+	
+	public List<ITree> getViolationSourceCodeTrees() {
+		return this.matchedTrees;
+	}
+	
+	public int getViolationFinalStartLine() {
+		return violationFinalStartLine;
+	}
+
+	public int getViolationFinalEndLine() {
+		return violationFinalEndLine;
+	}
+	
+	public void extract() {
+		ITree rootTree = new GumTreeGenerator().generateITreeForJavaFile(file, GumTreeType.EXP_JDT);
+		
+		List<ITree> trees = rootTree.getChildren();
+		for (ITree tree : trees) {
+			int startPosition = tree.getPos();
+			int startLine = cUnit.getLineNumber(startPosition);
+			if (startLine > violationEndLine) {
+				break;
+			}
+			
+			int endPosition = startPosition + tree.getLength();
+			int endLine = cUnit.getLineNumber(endPosition - 1);
+			if (endLine < violationStartLine) continue;
+			
+			matchTrees(tree.getChildren());
+		}
+		
+		int size = matchedTrees.size();
+		if (size > 0) {
+			this.violationFinalStartLine = cUnit.getLineNumber(this.matchedTrees.get(0).getPos());
+			ITree lastTree = matchedTrees.get(size - 1);
+			this.violationFinalEndLine = cUnit.getLineNumber(lastTree.getPos() + lastTree.getLength());
+		} else {
+			System.err.println(this.file.getName() + "===" + this.violationStartLine + ":" + this.violationEndLine);
+		}
+		
+	}
+
+	public void extract(String type) {
+		ITree rootTree = new GumTreeGenerator().generateITreeForJavaFile(file, GumTreeType.EXP_JDT);
+		
+		List<ITree> trees = rootTree.getChildren();
+		for (ITree tree : trees) {
+			int startPosition = tree.getPos();
+			int startLine = cUnit.getLineNumber(startPosition);
+			if (startLine > violationEndLine) {
+				break;
+			}
+			
+			int endPosition = startPosition + tree.getLength();
+			int endLine = cUnit.getLineNumber(endPosition - 1);
+			if (endLine < violationStartLine) continue;
+			
+			matchTrees(tree.getChildren());
+		}
+		
+		int size = matchedTrees.size();
+		if (size > 0) {
+			this.violationFinalStartLine = cUnit.getLineNumber(this.matchedTrees.get(0).getPos());
+			ITree lastTree = matchedTrees.get(size - 1);
+			this.violationFinalEndLine = cUnit.getLineNumber(lastTree.getPos() + lastTree.getLength());
+		} else {
+			System.err.println(type);
+			System.err.println(this.file.getName() + "===" + this.violationStartLine + ":" + this.violationEndLine);
+		}
+		
+	}
+
+	private void matchTrees(List<ITree> trees) {
+		for (ITree tree : trees) {
+			int startPosition = tree.getPos();
+			int startLine = cUnit.getLineNumber(startPosition);
+			if (startLine > violationEndLine) {
+				break;
+			} 
+			
+			int endPosition = startPosition + tree.getLength();
+			int endLine = cUnit.getLineNumber(endPosition);
+			if (endLine < violationStartLine) continue;
+			
+			if (endLine == violationEndLine) {
+				if (tree.getType() == 31) { // MethodDeclaration
+					matchTrees(tree.getChildren());
+				} else if (isStatement(tree)) {
+					addToMatchedTrees(tree);
+				} else {
+					ITree parent = getParentStatement(tree);
+					if (parent == null) {
+						if (tree.getType() == 8) { // 8: Block
+							matchTrees(tree.getChildren());
+						}
+						continue;
+					}
+					addToMatchedTrees(parent);
+				}
+				continue;
+			}
+			
+			if (startLine >= violationStartLine) {
+				if (isStatement(tree)) {
+					addToMatchedTrees(tree);
+				} else {
+					ITree parent = getParentStatement(tree);
+					if (parent == null) {
+						if (tree.getType() == 8) {
+							matchTrees(tree.getChildren());
+						}
+						continue;
+					}
+					addToMatchedTrees(parent);
+				}
+			} else {
+//				if (tree.getType() == 14) {
+//					ITree parent = getParentStatement(tree);
+//					if (parent == null) {
+//						matchTrees(tree.getChildren());
+//					} else {
+//						addToMatchedTrees(parent);
+//					}
+//				} else {
+//					matchTrees(tree.getChildren());
+//				}
+				matchTrees(tree.getChildren());
+			}
+		}
+	}
+
+	private void addToMatchedTrees(ITree tree) {
+		if (!matchedTrees.contains(tree)) {
+			/*
+			 *  TODO with the same parent, or the sub trees.
+			 *  	 In the same method body.
+			 */
+			matchedTrees.add(tree);
+		}
+		if (containsBlockStatement(tree)) {
+			int endLine = cUnit.getLineNumber(tree.getPos() + tree.getLength());
+			if (endLine > violationEndLine) {
+				tree = removeBlock(tree);
+			}
+		}
+	}
+
+	private ITree removeBlock(ITree tree) {
+		List<ITree> oldChildren = tree.getChildren();
+		List<ITree> newChildren = new ArrayList<>();
+		for (ITree child : oldChildren) {
+			int startPosition = child.getPos();
+			int startLine = cUnit.getLineNumber(startPosition);
+			if (startLine > violationEndLine) {
+				break;
+			} 
+			int endPosition = startPosition + child.getLength();
+			int endLine = cUnit.getLineNumber(endPosition);
+			if (endLine > this.violationEndLine) {
+				if (child.getType() == 8 || containsBlockStatement(child)) { // 8: Block
+					child = removeBlock(child);
+					if (child.getChildren().size() == 0) {
+						continue;
+					}
+				}
+			}
+			newChildren.add(child);
+		}
+		tree.setChildren(newChildren);
+		return tree;
+	}
+
+	private ITree getParentStatement(ITree tree) {
+		ITree parent = tree;
+		do {
+			parent = parent.getParent();
+			if (parent == null) {
+				return null;
+			}
+			
+			int type = parent.getType();
+			if (type == 1 || type == 31 || type == 55 || type == 71) {
+				// AnonymousClassDeclaration
+				// MethodDeclaration  Initializer (type == 28)
+				// TypeDeclaration
+				// EnumDeclaration
+				return null;
+			}
+		} while (!isStatement(parent));
+
+		return parent;
+	}
+
+	private boolean isStatement(ITree tree) {
+		int type = tree.getType(); // 8 Block
+		if (type == 6) return true;  // AssertStatement
+		if (type == 10) return true; // BreakStatement
+		if (type == 17) return true; // ConstructorInvocation
+		if (type == 18) return true; // ContinueStatement
+		if (type == 21) return true; // ExpressionStatement
+		if (type == 23) return true; // FieldDeclaration
+		if (type == 41) return true; // ReturnStatement
+		if (type == 46) return true; // SuperConstructorInvocation
+		if (type == 49) return true; // SwitchCase
+		if (type == 53) return true; // ThrowStatement
+		if (type == 56) return true; // TypeDeclarationStatement
+		if (type == 60) return true; // VariableDeclarationStatement
+		if (containsBlockStatement(tree)) return true;
+		return false;
+	}
+
+	private boolean containsBlockStatement(ITree tree) {
+		int type = tree.getType();
+		if (type == 12) return true; // catchClause
+		if (type == 19) return true; // DoStatement
+		if (type == 24) return true; // ForStatement
+		if (type == 25) return true; // IfStatement
+		if (type == 30) return true; // LabeledStatement
+		if (type == 50) return true; // SwitchStatement
+		if (type == 51) return true; // SynchronizedStatement
+		if (type == 54) return true; // TryStatement
+		if (type == 61) return true; // WhileStatement
+		if (type == 70) return true; // EnhancedForStatement
+		return false;
+	}
+	
+	public void locateParentNode(String type) {
+		ITree rootTree = new GumTreeGenerator().generateITreeForJavaFile(file, GumTreeType.EXP_JDT);
+		
+		List<ITree> trees = rootTree.getChildren();
+		for (ITree tree : trees) {
+			int startPosition = tree.getPos();
+			int startLine = cUnit.getLineNumber(startPosition);
+			if (startLine > violationEndLine) {
+				break;
+			}
+			
+			int endPosition = startPosition + tree.getLength();
+			int endLine = cUnit.getLineNumber(endPosition - 1);
+			if (endLine < violationStartLine) continue;
+			
+			locateParentNode(tree.getChildren(), type);
+		}
+		
+//		if (this.violationFinalStartLine == 0) {
+//			FileHelper.outputToFile("logs/testV1.txt", type + " : " + this.file.getName() + " : " + this.violationStartLine + " : " + this.violationEndLine + "\n", true);
+//		}
+	}
+
+	private void locateParentNode(List<ITree> trees, String type) {
+		for (ITree tree : trees) {
+			int startPosition = tree.getPos();
+			int startLine = cUnit.getLineNumber(startPosition);
+			if (startLine > violationEndLine) {
+				break;
+			} 
+			
+			int endPosition = startPosition + tree.getLength();
+			int endLine = cUnit.getLineNumber(endPosition);
+			if (endLine < violationStartLine) continue;
+			
+			if (endLine < violationEndLine) {
+				if ("NM_SAME_SIMPLE_NAME_AS_INTERFACE".equals(type) || "NM_SAME_SIMPLE_NAME_AS_SUPERCLASS".equals(type) || "NM_CLASS_NAMING_CONVENTION".equals(type) 
+						|| "NM_CLASS_NOT_EXCEPTION".equals(type) || "RI_REDUNDANT_INTERFACES".equals(type) 
+						// inner class
+						|| "SE_INNER_CLASS".equals(type) || "SE_BAD_FIELD_INNER_CLASS".equals(type) || "SIC_INNER_SHOULD_BE_STATIC_ANON".equals(type)
+						|| "SIC_INNER_SHOULD_BE_STATIC".equals(type) || "SIC_INNER_SHOULD_BE_STATIC_NEEDS_THIS".equals(type)) {
+					if (tree.getType() != 55) {
+						ITree parent = getParentTypeDeclaration(tree);
+						if (parent == null) {
+							this.violationFinalStartLine = -1;
+							break;
+						}
+						tree = parent;
+					}
+					startPosition = tree.getPos();
+					this.violationFinalStartLine = cUnit.getLineNumber(startPosition);
+					endPosition = getClassBodyStartPosition(tree);
+					if (endPosition == 0) {
+						endPosition = startPosition + tree.getLength();
+					}
+					this.violationFinalEndLine = cUnit.getLineNumber(endPosition);
+				} else if ("NM_METHOD_NAMING_CONVENTION".equals(type)){
+					// method name level
+					if (tree.getType() != 31) {
+						ITree parent = getParentMethodDeclaration(tree);
+						if (parent == null) {
+							this.violationFinalStartLine = -1;
+							break;
+						}
+						tree = parent;
+					}
+					startPosition = tree.getPos();
+					this.violationFinalStartLine = cUnit.getLineNumber(startPosition);
+					endPosition = getMethodBodyStartPosition(tree);
+					if (endPosition == 0) {
+						endPosition = startPosition + tree.getLength();
+					}
+					this.violationFinalEndLine = cUnit.getLineNumber(endPosition);
+//				} else if ("SE_NO_SUITABLE_CONSTRUCTOR".equals(type) || "CN_IDIOM".equals(type)
+//						|| "SE_NO_SERIALVERSIONID".equals(type) || "SE_NO_SUITABLE_CONSTRUCTOR_FOR_EXTERNALIZATION".equals(type)
+//						|| "SE_COMPARATOR_SHOULD_BE_SERIALIZABLE".equals(type)) {
+//					this.violationFinalStartLine = -1;
+				} else {
+					this.violationFinalStartLine = -1;
+				}
+//				FileHelper.outputToFile("logs/testV2.txt", type + " : " + this.file.getName() + " : " + this.violationStartLine + " : " + this.violationEndLine + "\n", true);
+				break;
+			}
+			
+			if (tree.getType() == 31 || tree.getType() == 23) { // MethodDeclaration, FieldDeclaration
+				this.violationFinalStartLine = startLine;
+				this.violationFinalEndLine = endLine;
+				break;
+			} else {
+				locateParentNode(tree.getChildren(), type);
+			}
+		}
+	}
+
+	private int getMethodBodyStartPosition(ITree tree) {
+		List<ITree> children = tree.getChildren();
+		for (int i = 0, size = children.size(); i < size; i ++) {
+			ITree child = children.get(i);
+			int type = child.getType();
+			if (type == 8) {
+				return child.getPos() - 1;
+			}
+		}
+		return 0;
+	}
+
+	private ITree getParentMethodDeclaration(ITree tree) {
+		ITree parent = tree;
+		int type = 0;
+		do {
+			parent = parent.getParent();
+			if (parent == null) {
+				return null;
+			}
+			type = parent.getType();
+		} while (type != 31);
+		return parent;
+	}
+
+	private int getClassBodyStartPosition(ITree tree) {
+		List<ITree> children = tree.getChildren();
+		for (int i = 0, size = children.size(); i < size; i ++) {
+			ITree child = children.get(i);
+			int type = child.getType();
+			// Modifier, NormalAnnotation, MarkerAnnotation, SingleMemberAnnotation
+			if (type != 83 && type != 77 && type != 78 && type != 79
+				&& type != 5 && type != 39 && type != 43 && type != 74 && type != 75
+				&& type != 76 && type != 84 && type != 87 && type != 88) {
+				// ArrayType, PrimitiveType, SimpleType, ParameterizedType, 
+				// QualifiedType, WildcardType, UnionType, IntersectionType, NameQualifiedType
+				if (i > 0) {
+					child = children.get(i - 1);
+					return child.getPos() + child.getLength() + 1;
+				} else {
+					return child.getPos() - 1;
+				}
+			}
+		}
+		return 0;
+	}
+
+	private ITree getParentTypeDeclaration(ITree tree) {
+		ITree parent = tree;
+		int type = 0;
+		do {
+			parent = parent.getParent();
+			if (parent == null) {
+				return null;
+			}
+			type = parent.getType();
+		} while (type != 55);
+		return parent;
+	}
+	
+}
diff --git a/src/main/java/edu/lu/uni/serval/violation/hunksize/HunkSizeComputer.java b/src/main/java/edu/lu/uni/serval/violation/hunksize/HunkSizeComputer.java
new file mode 100644
index 0000000..526adba
--- /dev/null
+++ b/src/main/java/edu/lu/uni/serval/violation/hunksize/HunkSizeComputer.java
@@ -0,0 +1,81 @@
+package edu.lu.uni.serval.violation.hunksize;
+
+import java.io.BufferedReader;
+import java.io.File;
+import java.io.IOException;
+import java.io.StringReader;
+import java.util.ArrayList;
+import java.util.List;
+
+import edu.lu.uni.serval.utils.FileHelper;
+import edu.lu.uni.serval.utils.ListSorter;
+
+public class HunkSizeComputer {
+
+	public static void main(String[] args) throws IOException {
+		String unfixedAlarmFile = "Dataset/Unfixed-Alarms/";
+		
+		List<File> unfixedAlarmFiles = FileHelper.getAllFilesInCurrentDiectory(unfixedAlarmFile, ".csv");
+		StringBuilder builder = new StringBuilder();
+		int counter = 0;
+		int size = 0;
+		List<Integer> sizes = new ArrayList<>();
+		for (File file : unfixedAlarmFiles) {
+			String content = FileHelper.readFile(file);
+			BufferedReader reader = new BufferedReader(new StringReader(content));
+			String line = null;
+			while ((line = reader.readLine()) != null) {
+				String[] elements = line.split(",");
+				int startLine = Integer.parseInt(elements[4]);
+				int endLine = Integer.parseInt(elements[5]);
+				
+				if (startLine == -1 || endLine == -1) continue;
+				
+				int range = endLine - startLine + 1;
+				builder.append(range + "\n");
+				if (range != 1) {
+					counter ++;
+				}
+				size ++;
+				sizes.add(range);
+			}
+			reader.close();
+		}
+		
+		String content = FileHelper.readFile("Dataset/fixed-alarms-v1.0.list");
+		BufferedReader reader = new BufferedReader(new StringReader(content));
+		String line = null;
+		while ((line = reader.readLine()) != null) {
+			int arrowIndex = line.indexOf("=>");
+			String buggyInfo = line.substring(0, arrowIndex);
+			String[] buggyElements = buggyInfo.split(":");
+
+			int startLine = Integer.parseInt(buggyElements[4]);
+			int endLine = Integer.parseInt(buggyElements[5]);
+			
+			if (startLine == -1 || endLine == -1) continue;
+			
+			int range = endLine - startLine + 1;
+			if (range != 1) {
+				counter ++;
+			}
+			builder.append(range + "\n");
+			size ++;
+			sizes.add(range);
+		}
+		reader.close();
+		
+		FileHelper.outputToFile("Dataset/sizes.csv", builder, false);
+		
+		System.out.println(size);
+		System.out.println(counter);
+		System.out.println(sizes.size());
+		ListSorter<Integer> sorter = new ListSorter<>(sizes);
+		sizes = sorter.sortAscending();
+		System.out.println(sizes.get((int) (sizes.size() * 0.7)));
+		System.out.println(sizes.get((int) (sizes.size() * 0.8)));
+		System.out.println(sizes.get((int) (sizes.size() * 0.9)));
+		System.out.println(sizes.get((int) (sizes.size() * 0.95)));
+	}
+
+}
diff --git a/src/main/java/edu/lu/uni/serval/violation/parse/AlarmsReader.java b/src/main/java/edu/lu/uni/serval/violation/parse/AlarmsReader.java
index 165718f..bebe02e 100644
--- a/src/main/java/edu/lu/uni/serval/violation/parse/AlarmsReader.java
+++ b/src/main/java/edu/lu/uni/serval/violation/parse/AlarmsReader.java
@@ -123,23 +123,19 @@ public class AlarmsReader {
 			
 			while (scanner.hasNextLine()) {
 				String line = scanner.nextLine();
-				int arrowIndex = line.indexOf("=>");
-				String alarmInfo = arrowIndex > 0 ? line.substring(0, arrowIndex) : line;
+//				int arrowIndex = line.indexOf("=>");
+//				String alarmInfo = arrowIndex > 0 ? line.substring(0, arrowIndex) : line;
+//				String[] buggyElements = alarmInfo.split(",");
+				String[] buggyElements = line.split(",");
 
-				String[] buggyElements = alarmInfo.split(",");
-
-//				String alarmType = buggyElements[0];
 				String projectName = buggyElements[1];
 				String buggyCommitId = buggyElements[2];
 				String buggyFile = buggyElements[3];
-//				int startLine = Integer.parseInt(buggyElements[4]);
-//				int endLine = Integer.parseInt(buggyElements[5]);
 //				if (startLine == -1 || endLine == -1 || endLine == 1) {
 ////					log.error("UNFIXED ALARM WRONG_POSITION: " + line);
 //					builder.append(line + "\n");
 //					continue;
 //				}
-//				String alarmTypeAndPosition = buggyElements[0] + ":" + startLine + ":" + endLine; // Alarm type : start line : end line.
 				String alarmTypeAndPosition = buggyElements[0] + ":" + buggyElements[4] + ":" + buggyElements[5]; // Alarm type : start line : end line.
 				
 				Alarm alarm = new Alarm(buggyCommitId, buggyFile, "", "");
diff --git a/src/main/java/edu/lu/uni/serval/violation/parse/Test.java b/src/main/java/edu/lu/uni/serval/violation/parse/Test.java
index 88c7f51..c35e630 100644
--- a/src/main/java/edu/lu/uni/serval/violation/parse/Test.java
+++ b/src/main/java/edu/lu/uni/serval/violation/parse/Test.java
@@ -13,34 +13,34 @@ import edu.lu.uni.serval.utils.FileHelper;
 public class Test {
 
 	public static void main(String[] args) throws IOException {
-		String filePath = Configuration.GUM_TREE_INPUT + "un_positions/";
-		List<File> files = FileHelper.getAllFiles(filePath, ".txt");
-		System.out.println(files.size());
-		List<String> projects = new ArrayList<>();
-		int unfixedI = 0;
-		for (File file : files) {
-			String fileName = file.getName();
-			fileName = fileName.substring(0, fileName.indexOf("#"));
-			fileName = fileName.substring(0, fileName.lastIndexOf("_"));
-			fileName = fileName.substring(0, fileName.lastIndexOf("_"));
-			if (!projects.contains(fileName)) {
-				projects.add(fileName);
-			}
-			String content = FileHelper.readFile(file);
-			BufferedReader reader = new BufferedReader(new StringReader(content));
-			while (reader.readLine() != null) {
-				unfixedI ++;
-			}
-			reader.close();
-		}
-		
-		for (String str : projects) {
-			System.out.println(str);
-		}
-		System.out.println("Unfixed: " + unfixedI);
+//		String filePath = Configuration.GUM_TREE_INPUT + "un_positions/";
+//		List<File> files = FileHelper.getAllFiles(filePath, ".txt");
+//		System.out.println(files.size());
+//		List<String> projects = new ArrayList<>();
+//		int unfixedI = 0;
+//		for (File file : files) {
+//			String fileName = file.getName();
+//			fileName = fileName.substring(0, fileName.indexOf("#"));
+//			fileName = fileName.substring(0, fileName.lastIndexOf("_"));
+//			fileName = fileName.substring(0, fileName.lastIndexOf("_"));
+//			if (!projects.contains(fileName)) {
+//				projects.add(fileName);
+//			}
+//			String content = FileHelper.readFile(file);
+//			BufferedReader reader = new BufferedReader(new StringReader(content));
+//			while (reader.readLine() != null) {
+//				unfixedI ++;
+//			}
+//			reader.close();
+//		}
+//		
+//		for (String str : projects) {
+//			System.out.println(str);
+//		}
+//		System.out.println("Unfixed: " + unfixedI);
 		
 		String positionFath = Configuration.GUM_TREE_INPUT + "positions/";
-		files = FileHelper.getAllFilesInCurrentDiectory(positionFath, ".txt");
+		List<File> files = FileHelper.getAllFilesInCurrentDiectory(positionFath, ".txt");
 		System.out.println("File Path: " + positionFath);
 		System.out.println(files.size());
 		int i = 0;
@@ -56,18 +56,18 @@ public class Test {
 		System.out.println("Fixed: " + i);
 		
 		
-		String unfixedAlarmFile = "Dataset/Unfixed-Alarms/";
-		List<File> unfixedAlarmFiles = FileHelper.getAllFilesInCurrentDiectory(unfixedAlarmFile, ".csv");
-		int a = 0;
-		for (File file : unfixedAlarmFiles) {
-			String content = FileHelper.readFile(file);
-			BufferedReader reader = new BufferedReader(new StringReader(content));
-			while (reader.readLine() != null) {
-				a ++;
-			}
-			reader.close();
-		}
-		System.out.println("unfixed: " + a);
+//		String unfixedAlarmFile = "Dataset/Unfixed-Alarms/";
+//		List<File> unfixedAlarmFiles = FileHelper.getAllFilesInCurrentDiectory(unfixedAlarmFile, ".csv");
+//		int a = 0;
+//		for (File file : unfixedAlarmFiles) {
+//			String content = FileHelper.readFile(file);
+//			BufferedReader reader = new BufferedReader(new StringReader(content));
+//			while (reader.readLine() != null) {
+//				a ++;
+//			}
+//			reader.close();
+//		}
+//		System.out.println("unfixed: " + a);
 		
 		String fixedAlarmFile = "Dataset/fixed-alarms-v1.0.list";
 		int b = 0;
diff --git a/src/main/java/edu/lu/uni/serval/violation/parse/TestViolationParser.java b/src/main/java/edu/lu/uni/serval/violation/parse/TestViolationParser.java
index 249b3ba..c021c88 100644
--- a/src/main/java/edu/lu/uni/serval/violation/parse/TestViolationParser.java
+++ b/src/main/java/edu/lu/uni/serval/violation/parse/TestViolationParser.java
@@ -27,31 +27,46 @@ public class TestViolationParser {
 			}
 		}
 		
-		String unfixedAlarmFile = "Dataset/Unfixed-Alarms/";
-		final String unfixedFilesPath = Configuration.GUM_TREE_INPUT + "unfixAlarms/";
-		final String unfixedOositionsFilePath = Configuration.GUM_TREE_INPUT + "un_positions/";
+		// Violation instances of single violation type
+		String unfixedViolations = "../FPM_Violations/unFixedInstances/";
+		String unfixedFilesPath = Configuration.GUM_TREE_INPUT + "UnfixedViolations/";
+		String unfixedPositionsFilePath = Configuration.GUM_TREE_INPUT + "UnFV_positions/";
 		FileHelper.createDirectory(unfixedFilesPath);
-		FileHelper.createDirectory(unfixedOositionsFilePath);
-		
-		List<File> unfixedAlarmFiles = FileHelper.getAllFilesInCurrentDiectory(unfixedAlarmFile, ".csv");
-		
+		FileHelper.createDirectory(unfixedPositionsFilePath);
+		List<File> unfixedAlarmFiles = FileHelper.getAllFilesInCurrentDiectory(unfixedViolations, ".list");
 		for (File file : unfixedAlarmFiles) {
+			String fileName = FileHelper.getFileNameWithoutExtension(file);
+			FileHelper.createDirectory(unfixedFilesPath + fileName + "/");
+			FileHelper.createDirectory(unfixedPositionsFilePath + fileName + "/");
 			ViolationParser parser = new ViolationParser();
-			parser.parseViolations(file, repositoriesList, unfixedFilesPath, unfixedOositionsFilePath);
+			parser.parseViolations(file, repositoriesList, unfixedFilesPath + fileName + "/", unfixedPositionsFilePath + fileName + "/");
 		}
 		
-		String fixedAlarmFile = "Dataset/fixed-alarms-v1.0.list";
-		final String previousFilesPath = Configuration.GUM_TREE_INPUT + "prevFiles/";
-		final String revisedFilesPath = Configuration.GUM_TREE_INPUT + "revFiles/";
-		final String positionsFilePath = Configuration.GUM_TREE_INPUT + "positions/";
-		final String diffentryFilePath = Configuration.GUM_TREE_INPUT + "diffentries/";
-		FileHelper.createDirectory(previousFilesPath);
-		FileHelper.createDirectory(revisedFilesPath);
-		FileHelper.createDirectory(positionsFilePath);
-		FileHelper.createDirectory(diffentryFilePath);
+//		String unfixedAlarmFile = "Dataset/Unfixed-Alarms/";
+//		final String unfixedFilesPath = Configuration.GUM_TREE_INPUT + "unfixAlarms/";
+//		final String unfixedOositionsFilePath = Configuration.GUM_TREE_INPUT + "un_positions/";
+//		FileHelper.createDirectory(unfixedFilesPath);
+//		FileHelper.createDirectory(unfixedOositionsFilePath);
+//		
+//		List<File> unfixedAlarmFiles = FileHelper.getAllFilesInCurrentDiectory(unfixedAlarmFile, ".csv");
+//		
+//		for (File file : unfixedAlarmFiles) {
+//			ViolationParser parser = new ViolationParser();
+//			parser.parseViolations(file, repositoriesList, unfixedFilesPath, unfixedOositionsFilePath);
+//		}
 		
-		ViolationParser parser = new ViolationParser();
-		parser.parseViolations(fixedAlarmFile, repositoriesList, previousFilesPath, revisedFilesPath, positionsFilePath, diffentryFilePath);
+//		String fixedAlarmFile = "Dataset/fixed-alarms-v1.0.list";
+//		final String previousFilesPath = Configuration.GUM_TREE_INPUT + "prevFiles/";
+//		final String revisedFilesPath = Configuration.GUM_TREE_INPUT + "revFiles/";
+//		final String positionsFilePath = Configuration.GUM_TREE_INPUT + "positions/";
+//		final String diffentryFilePath = Configuration.GUM_TREE_INPUT + "diffentries/";
+//		FileHelper.createDirectory(previousFilesPath);
+//		FileHelper.createDirectory(revisedFilesPath);
+//		FileHelper.createDirectory(positionsFilePath);
+//		FileHelper.createDirectory(diffentryFilePath);
+//		
+//		ViolationParser parser = new ViolationParser();
+//		parser.parseViolations(fixedAlarmFile, repositoriesList, previousFilesPath, revisedFilesPath, positionsFilePath, diffentryFilePath);
 	
 	}