diff --git a/Dataset/LiveStudy/Patches b/Dataset/LiveStudy/Patches deleted file mode 100644 index c94a805..0000000 --- a/Dataset/LiveStudy/Patches +++ /dev/null @@ -1,119 +0,0 @@ -BC_UNCONFIRMED_CAST -BC_UNCONFIRMED_CAST_OF_RETURN_VALUE Comments: no any useful common fix patterns. -EI_EXPOSE_REP -EI_EXPOSE_REP2 -IS2_INCONSISTENT_SYNC -NM_METHOD_NAMING_CONVENTION - -DE_MIGHT_IGNORE Compile failed. -DLS_DEAD_LOCAL_STORE Compile failed -NP_LOAD_OF_KNOWN_NULL_VALUE - -DM_CONVERT_CASE To be improved - -DM_BOXED_PRIMITIVE_FOR_PARSING -DM_DEFAULT_ENCODING -DM_FP_NUMBER_CTOR -DM_NUMBER_CTOR -ES_COMPARING_STRINGS_WITH_EQ Comments: ignored - -MS_PKGPROTECT -MS_SHOULD_BE_FINAL Comments: failed to checkstyle. - -NP_NONNULL_RETURN_VIOLATION -NP_NULL_ON_SOME_PATH -NP_NULL_ON_SOME_PATH_FROM_RETURN_VALUE -NP_PARAMETER_MUST_BE_NONNULL_BUT_MARKED_AS_NULLABLE -OBL_UNSATISFIED_OBLIGATION -OBL_UNSATISFIED_OBLIGATION_EXCEPTION_EDGE -ODR_OPEN_DATABASE_RESOURCE -OS_OPEN_STREAM -OS_OPEN_STREAM_EXCEPTION_PATH -PZLA_PREFER_ZERO_LENGTH_ARRAYS -RCN_REDUNDANT_NULLCHECK_OF_NONNULL_VALUE -RCN_REDUNDANT_NULLCHECK_WOULD_HAVE_BEEN_A_NPE -REC_CATCH_EXCEPTION -RI_REDUNDANT_INTERFACES -RV_RETURN_VALUE_IGNORED_BAD_PRACTICE -RV_RETURN_VALUE_IGNORED_NO_SIDE_EFFECT -SBSC_USE_STRINGBUFFER_CONCATENATION -SE_NO_SERIALVERSIONID -SF_SWITCH_NO_DEFAULT -SIC_INNER_SHOULD_BE_STATIC -SIC_INNER_SHOULD_BE_STATIC_ANON -SQL_PREPARED_STATEMENT_GENERATED_FROM_NONCONSTANT_STRING -ST_WRITE_TO_STATIC_FROM_INSTANCE_METHOD -UC_USELESS_CONDITION -UC_USELESS_OBJECT -UCF_USELESS_CONTROL_FLOW -UPM_UNCALLED_PRIVATE_METHOD -URF_UNREAD_FIELD -URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -UWF_UNWRITTEN_FIELD -VA_FORMAT_STRING_USES_NEWLINE -WMI_WRONG_MAP_ITERATOR - - -rejected 1 https://github.com/apache/commons-io/pull/47 -rejected 1 https://github.com/apache/commons-io/pull/45 - -rejected 1 https://github.com/apache/commons-lang/pull/298 - 5 https://github.com/apache/commons-lang/pull/297 -improved 1 https://github.com/apache/commons-lang/pull/297 Comments: some patches failed to pass test cases, some patches led to compile failed, some patches led to checkstyle failed. - - 2 https://github.com/apache/commons-math/pull/69 - 1 https://github.com/apache/commons-math/pull/68 Comments: inner static class, there is no need to fix the violations in this kind of class. - 2 https://github.com/apache/commons-math/pull/67 Comments: improve patches. - 1 https://github.com/apache/commons-math/pull/66 - -rejected 1 https://github.com/apache/ant/pull/47 -improved 1 https://github.com/apache/ant/pull/46 -merged 2 https://github.com/apache/ant/pull/46 - 2 https://github.com/apache/ant/pull/45 -rejected 3 https://github.com/apache/ant/pull/44 -merged 1 https://github.com/apache/ant/pull/43 -merged 5 https://github.com/apache/ant/pull/42 Comments: need to import new packages, unless the fixed patches will fail to compile. -merged 1 https://github.com/apache/ant/pull/41 - - 1 https://github.com/apache/aries/pull/80 - 1 https://github.com/apache/aries/pull/79 - 1 https://github.com/apache/aries/pull/78 - 1 https://github.com/apache/aries/pull/77 - 1 https://github.com/apache/aries/pull/76 - -rejected 1 https://github.com/apache/camel/pull/2031 ShouldBeFinal -rejected 6 https://github.com/apache/camel/pull/2029 master5 -merged 1 https://github.com/apache/camel/pull/2035 master7 -merged 2 https://github.com/apache/camel/pull/2032 Useless -merged 2 https://github.com/apache/camel/pull/2025 master6 -merged 1 https://github.com/apache/camel/pull/2024 master4 -merged 1 https://github.com/apache/camel/pull/2023 master2 -rejected 1 https://github.com/apache/camel/pull/2017 master3 Comments: compile failed, the return value of method invocation is not Boolean, it is a specific case. -merged 1 https://github.com/apache/camel/pull/2016 master -merged 6 https://github.com/apache/camel/pull/2038 boxedParsing - - - 3 https://github.com/apache/cassandra/pull/165 - 4 https://github.com/apache/cassandra/pull/164 - 2 https://github.com/apache/cassandra/pull/163 - -Fixed 1 https://github.com/fangyidong/json-simple/pull/126 Comments: fixed in another version. https://github.com/RalleYTN/SimpleJSON - 1 https://github.com/fangyidong/json-simple/pull/125 - -On hold 1 https://github.com/apache/mahout/pull/346 - 1 https://github.com/apache/mahout/pull/345 - 1 https://github.com/apache/mahout/pull/344 - -merged 2 https://github.com/apache/poi/pull/77 5 -merged 4 https://github.com/apache/poi/pull/78 6 -merged 2 https://github.com/apache/poi/pull/79 t -merged 1 https://github.com/apache/poi/pull/80 4 -merged 4 https://github.com/apache/poi/pull/76 2 -merged 30 https://github.com/apache/poi/pull/75 master -merged 1 https://github.com/apache/poi/pull/74 3 - - - -Some violations never happened in these projects: - diff --git a/Dataset/Patterns/Fix-Patterns b/Dataset/Patterns/Fix-Patterns deleted file mode 100644 index e14f13a..0000000 --- a/Dataset/Patterns/Fix-Patterns +++ /dev/null @@ -1,131 +0,0 @@ -===================================== -=========Useful Fix Patterns========= -===================================== -==============Detailed=============== -DM_CONVERT_CASE - (1) ADD a rule of Locale.ENGLISH into toLowerCase/toUpperCase. -RCN_REDUNDANT_NULLCHECK_OF_NONNULL_VALUE - (1) DEL Null-Check IfStatement, - (2) DEL Null-Check Conditional Expression. -REC_CATCH_EXCEPTION - (1) Change Exception to a specific exception class. -SE_NO_SERIALVERSIONID - (1) Insert a private static final field serialVersionUID. -VA_FORMAT_STRING_USES_NEWLINE - (1) DEL "$backslash$n", - (2) Replace "$backslash$n" with "n" -MS_SHOULD_BE_FINAL - (1) ADD a ``final'' modifier. -WMI_WRONG_MAP_ITERATOR - (1) Replace the KeySet iterating ForStatement with an EntrySet iterating ForStatement. -DM_NUMBER_CTOR - (1) Replace the NumberType ClassInstanceCreation with a NumberType.valueOf() method invocation. -SIC_INNER_SHOULD_BE_STATIC - (1) ADD a "static" modifier, - (2) DEL the buggy statements. -DE_MIGHT_IGNORE - (1) Change Exception to a specific exception class. -DM_BOXED_PRIMITIVE_FOR_PARSING - (1) Replace NumberType.valueOf() with NumberType.parseNumberType(). -DM_FP_NUMBER_CTOR - (1) DEL the buggy statement, - (2) Replace Double or Float ClassInstanceCreation with (Double or Float).valueOf(), - (3) Remove the Double or Float ClassInstanceCreation from the buggy expression. -MS_PKGPROTECT - (1) DEL the buggy statement, - (2) DEL the ``public'' or ``protected'' modifier - (3) Replace the ``public'' or ``protected'' modifier with the ``private'' modifier. - (4) DEL the initialization expression. -ES_COMPARING_STRINGS_WITH_EQ - (1) Replace the ``=='' InfixExpression with a stringVar.equals() method invocation. - - -===============Abstract============== -NP_NULL_ON_SOME_PATH - (1) ADD a Null-check statement or expression. -RI_REDUNDANT_INTERFACES - (1) DEL the implemented Interface type. -NP_NULL_ON_SOME_PATH_FROM_RETURN_VALUE - (1) ADD a Null-check statement or expression, - (2) DEL the buggy statement. -UCF_USELESS_CONTROL_FLOW - (1) DEL the buggy statement, - (2) DEL the useless ConditionalExpression. -UC_USELESS_CONDITION - (1) UPD the operator of a ConditionalExpersion, - (2) UPD an sub-expression of a ConditionExpression. -NP_LOAD_OF_KNOWN_NULL_VALUE - (1) DEL Null-check expression or statement, - (2) Replace the null-known variable with NULL. -SBSC_USE_STRINGBUFFER_CONCATENATION - (1) Replace String type with StringBuilder, and replace plus operator of StringVarialbe with the append method of StringBuilder. -UC_USELESS_OBJECT - (1) DEL the buggy statement. -UPM_UNCALLED_PRIVATE_METHOD - (1) DEL the buggy statements. -NM_METHOD_NAMING_CONVENTION - (1) Update Method Name of MethodDeclaration. -URF_UNREAD_FIELD - (1) DEL the buggy statement. -===================================== -NP_NONNULL_RETURN_VIOLATION - (1) DEL the null-returned ReturnStatement. - (2) Replace NullLiteral with an Expression which returns an empty list. -PZLA_PREFER_ZERO_LENGTH_ARRAYS - (1) DEL the buggy statement, - √ (2) Replace NullLiteral with an empty array. -SIC_INNER_SHOULD_BE_STATIC_ANON - (1) DEL a parameter of a ClassInstanceCreation in an AnonymousClassDeclaration, - (2) DEL the statement contains an AnonymousClassDeclaration, - √ (3) Replace the AnonymousClassDeclaration with an defined Static Object of this class. -DLS_DEAD_LOCAL_STORE - (1) DEL the buggy statement. -DM_DEFAULT_ENCODING - √ (1) ADD a parameter (i.e., "UTF-8") into the ClassInstanceCreation of a Stream object. - (2) Replace ClassInstanceCreation with a MethodInvocation. - (3) DEL the buggy statement. -BC_UNCONFIRMED_CAST - (1) DEL the buggy statement, - (2) DEL the Cast Type, - (3) Replace CastExpression with NullLiteral. -URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD - (1) ADD a ``final'' modifier, - √ (2) DEL the buggy statement. -RV_RETURN_VALUE_IGNORED_BAD_PRACTICE - (1) Replace boolean-returned statement with a a new MethodInvocation. - √ (2) ADD an IfStatement. -EI_EXPOSE_REP - (1) DEL the buggy statement, - * (2) Replace the being assigned Expression with a ConditionalExpression. - √ (3) Replace the Expression being assigned with other Expression -EI_EXPOSE_REP2 - (1) DEL the buggy statement, - * (2) Replace the being assigned Expression with a ConditionalExpression. - √ (3) Replace the being assigned Expression with other Expression. - -===================================== -==========Null Fix Patterns========== -===================================== -UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR null. -OBL_UNSATISFIED_OBLIGATION null. -OS_OPEN_STREAM_EXCEPTION_PATH null. -SF_SWITCH_NO_DEFAULT null. -UWF_UNWRITTEN_FIELD null. -IS2_INCONSISTENT_SYNC null. -ODR_OPEN_DATABASE_RESOURCE null. -SQL_PREPARED_STATEMENT_GENERATED_FROM_NONCONSTANT_STRING null. -OBL_UNSATISFIED_OBLIGATION_EXCEPTION_EDGE null. -OS_OPEN_STREAM null. -NP_PARAMETER_MUST_BE_NONNULL_BUT_MARKED_AS_NULLABLE null. - -===================================== -========Useless Fix Patterns========= -===================================== -BC_UNCONFIRMED_CAST_OF_RETURN_VALUE - (1) UPD T1 v1 = (T1) method_invocation() with T2 v1 = method_invocation(), - (2) DEL the buggy statement, - (3) Replace the buggy CastExpresion with a MethodInvocation. -ST_WRITE_TO_STATIC_FROM_INSTANCE_METHOD - (1) DEL the buggy statement. -RCN_REDUNDANT_NULLCHECK_WOULD_HAVE_BEEN_A_NPE - (1) ADD a Null-check statement or expression. diff --git a/Dataset/Patterns/Source-Code-Patterns-Unfixed-Violations b/Dataset/Patterns/Source-Code-Patterns-Unfixed-Violations deleted file mode 100644 index a748015..0000000 --- a/Dataset/Patterns/Source-Code-Patterns-Unfixed-Violations +++ /dev/null @@ -1,107 +0,0 @@ -================================ -=========Single Pattern========= -================================ -SIC_INNER_SHOULD_BE_STATIC_ANON: new Type() { override some methods(...){...} }. Anonymous inner class declaration. 100% -DE_MIGHT_IGNORE: try{...} catch (Exception e) {...}, Exception is not any specified. -VA_FORMAT_STRING_USES_NEWLINE: "\n", this new line symbol is in a StringLiteral of a format method. -UCF_USELESS_CONTROL_FLOW: if (conditional expression) {empty statements.}. -UC_USELESS_CONDITION: if (conditional expressions) {...}. -UC_USELESS_OBJECT: T1 v1 = new T1(). -PZLA_PREFER_ZERO_LENGTH_ARRAYS: return null. -EI_EXPOSE_REP: return variable; -REC_CATCH_EXCEPTION: try{...} catch (Exception e) {...}, Exception is not any specific exception. -SF_SWITCH_NO_DEFAULT: switch(exp) {case1:...case2:...}, without default statement. -UWF_UNWRITTEN_FIELD: return exp / variable. -SBSC_USE_STRINGBUFFER_CONCATENATION: stringVariable += stringExp, -RV_RETURN_VALUE_IGNORED_NO_SIDE_EFFECT: return method_invocation_exp. Method invocation statement returns a value, but does not assign the value to any variable. (High false positives.) -NP_NONNULL_RETURN_VIOLATION: return null. (High false positives.) -================================ -========Multiple Patterns======= -================================ -NP_NULL_ON_SOME_PATH_FROM_RETURN_VALUE: (1) for (File file : filesArray) {...} (2) for (int i =0; i < filesArray.length; i ++) {...} -DM_CONVERT_CASE: (1) stringExp.toLowerCase(), 24,897 - (2)stringExp.toUpperCase(). 10,406 -MS_PKGPROTECT: (1) public static final T1 v1 = initializationExp, 2442 - (2) protected static final T1 v1 = initializationExp. 175 - (3) protected static T1 v1 = initializationExp. 158 - (4) public static T1 v1 = initializationExp. 262, other 46 -SIC_INNER_SHOULD_BE_STATIC: (1) this.v1 = v2; 590 - (2) v1 = v2; 170 - (3) super(...). 213 -BC_UNCONFIRMED_CAST: (1) T1 v1 = (T(1) v2/exp, (2) v1 = (T(1) v2/exp, (3) ((T(1) v2).exp. -ES_COMPARING_STRINGS_WITH_EQ: (1) stringExp1 == stringExp2 IfStatement, ReturnStatement, WhileStatement. - (2) stringExp1 != stringExp2 -RCN_REDUNDANT_NULLCHECK_OF_NONNULL_VALUE: (1) if (exp == null ...) {...}, - (2) if (exp != null ...) {...}, - (3) exp == null ? exp1 : exp2, - (4) exp != null ? exp1 : exp2. -DM_NUMBER_CTOR: (1) new Long(...), (2)new Integer(...), (3)new Short(...), (4)new Byte(...), (5)new Char(...). -DM_FP_NUMBER_CTOR: (1) new Double(exp), (2)new Float(exp). -DM_BOXED_PRIMITIVE_FOR_PARSING: (1) Integer.valueOf(str), (2)Long.valueOf(str). Comments: it contains fewer patterns than findbugs. -EI_EXPOSE_REP2: (1) this.v1 = v2, - (2) v1 = v2. 3700 -BC_UNCONFIRMED_CAST_OF_RETURN_VALUE: (1) T1 v1 = (T) method_invocation(), - (2) v1 = (T) method_invocation(), - (3) ((T) method_invocation()).exp. -ST_WRITE_TO_STATIC_FROM_INSTANCE_METHOD: (1) static_v1 = instance_exp1.method_invocation(), - (2) v1 = instance_exp1.method_invocation(), - (3) v1 = exp1, other variable assignment statement. -RV_RETURN_VALUE_IGNORED_BAD_PRACTICE: (1) File.mkdirs(), - (2) File.mkdir(), - (3) File.delete(), - (4) File.createNewFile(), - (5) other exp.method_invoation() returns a value. -SQL_PREPARED_STATEMENT_GENERATED_FROM_NONCONSTANT_STRING: (1) sqlExecutionStatement = StringLiteral1 + stringV1 + ... + StringLiteral2 + stringV2. - (2) sqlRelatedVariable = sqlRelatedMethodInvocation(); -OS_OPEN_STREAM: (1) StreamType v = new StreamType(...), 2) streamVariable = new StreamType(new StreamType2(...)), e.g., 1. FileOutputStream fos = new FileOutputStream(outFile); -DM_DEFAULT_ENCODING: (1) new BufferedReader(new InputStreamReader(input)), 99+ - (2) new StreamWriter(output); - (3) stringExp.getBytes(), - (4) new String(byteExp), - (5) byteExp.toString(). -ODR_OPEN_DATABASE_RESOURCE: (1) conn.createStatement(), - (2) conn.createStatement.execute(...), - (3) PreparedStatement st = conn.prepareStatement(), - (4) DataBaseConnection conn = exp.getConnection(...). -NP_PARAMETER_MUST_BE_NONNULL_BUT_MARKED_AS_NULLABLE: (1) return method_invocation(...), 2) return class_instance_creation(...). -======================================== -==========Inefficient Patterns========== -======================================== -OBL_UNSATISFIED_OBLIGATION: (1) StreamType v = new StreamType(...), - (2) streamVariable = new StreamType(new StreamType2(...)), - (3) sqlStatementExp.executeMethod(). e.g., 1. FileOutputStream fos = new FileOutputStream(outFile); 2. ResultSet rs = sqlStmt.executeQuery(). -OS_OPEN_STREAM_EXCEPTION_PATH: (1) StreamType v = new StreamType(...), - (2) streamVariable = new StreamType(...). -IS2_INCONSISTENT_SYNC: (1) return v1, - (2) if(conditionalExp) {...}, - (3) sqlStmt = stringLiteral1 + stringExp + stringLiteral2. not very consistent. -OBL_UNSATISFIED_OBLIGATION_EXCEPTION_EDGE: (1) StreamType v = new StreamType(...), - (2) streamVariable = new StreamType(new StreamType2(...)), - (3) sqlStatementExp.executeMethod(). e.g., 1. FileOutputStream fos = new FileOutputStream(outFile); 2. ResultSet rs = sqlStmt.executeQuery(). -WMI_WRONG_MAP_ITERATOR: for statement { ... MapVariable.get(keyExp) ... }. or NULL. Lack of enough information. -======================================== -=====Redundant Inconsistent Pattern===== -======================================== -MS_SHOULD_BE_FINAL: (1) public (28,302) static T1 v1 = exp. e.g., public static int maxStringLength = 65535. - (2) protected (6,719) static T1 v1 = exp. -URF_UNREAD_FIELD: (1) this.v1 = v2, (2)this.v1 = new T(), (3)private Type v = exp. Comments: it contains more patterns than findbugs. only pattern 3 is consistent. -URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD: (1) this.v1 = v2, - (2) public/protected (static) T1 v1 = exp; Comments: only 2 is consistent. - (3) v1 = exp1. -======================================== -=========Inconsistent Patterns========= -======================================== -RI_REDUNDANT_INTERFACES: super(...). Comments: not very consistent. Locate on the position of super classes. -======================================== -==============Null Pattern============== -======================================== -===========Inaccurate Position========== -NM_METHOD_NAMING_CONVENTION: null. Comments: violate on title, but position locates on body. -SE_NO_SERIALVERSIONID: null. -UPM_UNCALLED_PRIVATE_METHOD: null. (method body) -UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR: null. inaccurate positions. -==========Specific Source Code========== -DLS_DEAD_LOCAL_STORE: null. Variable assignment statements. Comments: specific source code. -NP_NULL_ON_SOME_PATH: null. -NP_LOAD_OF_KNOWN_NULL_VALUE: null. -RCN_REDUNDANT_NULLCHECK_WOULD_HAVE_BEEN_A_NPE: null. diff --git a/FixPatternMiner.iml b/FixPatternMiner.iml index 262312b..a7d8955 100644 --- a/FixPatternMiner.iml +++ b/FixPatternMiner.iml @@ -11,15 +11,6 @@ - - - - - - - - - @@ -27,9 +18,18 @@ + + + + + + + + + @@ -43,20 +43,12 @@ - - - - - - - - - + \ No newline at end of file diff --git a/inputData/1.txt b/inputData/1.txt deleted file mode 100644 index 46e4275..0000000 --- a/inputData/1.txt +++ /dev/null @@ -1,730 +0,0 @@ -https://github.com/IDPF/epubcheck.git -https://github.com/treasure-data/td-import-java.git -https://github.com/Atmosphere/atmosphere-extensions.git -https://github.com/astefanutti/camel-cdi.git -https://github.com/imagej/imagej-ui-swing.git -https://github.com/komoot/photon.git -https://github.com/FIWARE-Middleware/KIARA.git -https://github.com/mbosecke/pebble.git -https://github.com/metamx/java-util.git 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-#Null_Violation_Hunk:Activiti-Activiti_7dce14_94b753modules/activiti-engine/src/main/java/org/activiti/engine/impl/bpmn/behavior/UserTaskActivityBehavior.java:47:256:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:Activiti-Activiti_7dce14_94b753modules/activiti-engine/src/main/java/org/activiti/engine/impl/bpmn/helper/ClassDelegate.java:63:281:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:Activiti-Activiti_7dce14_94b753modules/activiti-engine/src/main/java/org/activiti/engine/impl/bpmn/helper/MessageThrowingEventListener.java:-1:-1:MF_CLASS_MASKS_FIELD -#Null_Violation_Hunk:Activiti-Activiti_7dce14_94b753modules/activiti-engine/src/main/java/org/activiti/engine/impl/calendar/DurationBusinessCalendar.java:22:22:MS_SHOULD_BE_FINAL -#Null_Violation_Hunk:Activiti-Activiti_7dce14_94b753modules/activiti-engine/src/main/java/org/activiti/engine/ProcessEngineConfiguration.java:658:658:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:Activiti-Activiti_8646b1_b13e7cmodules/activiti-engine/src/main/java/org/activiti/engine/ProcessEngineConfiguration.java:507:507:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:Activiti-Activiti_90446c_2d592dmodules/activiti-engine/src/main/java/org/activiti/engine/impl/bpmn/behavior/TransactionActivityBehavior.java:21:21:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:Activiti-Activiti_90446c_2d592dmodules/activiti-engine/src/main/java/org/activiti/engine/impl/bpmn/helper/ClassDelegate.java:63:281:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:Activiti-Activiti_90446c_2d592dmodules/activiti-engine/src/main/java/org/activiti/engine/impl/calendar/DurationBusinessCalendar.java:22:22:MS_SHOULD_BE_FINAL -#Illegal_Line_Position:Activiti-Activiti_90446c_2d592dmodules/activiti-engine/src/main/java/org/activiti/engine/impl/cmd/SubmitTaskFormCmd.java:-1:-1:MF_CLASS_MASKS_FIELD -#Null_Violation_Hunk:Activiti-Activiti_90446c_2d592dmodules/activiti-engine/src/main/java/org/activiti/engine/ProcessEngineConfiguration.java:658:658:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:Activiti-Activiti_915ceb_d4b1f8modules/activiti-bpmn-converter/src/main/java/org/activiti/bpmn/converter/CallActivityXMLConverter.java:108:131:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:Activiti-Activiti_915ceb_d4b1f8modules/activiti-bpmn-converter/src/main/java/org/activiti/bpmn/converter/CallActivityXMLConverter.java:134:157:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:Activiti-Activiti_915ceb_d4b1f8modules/activiti-bpmn-converter/src/main/java/org/activiti/bpmn/converter/UserTaskXMLConverter.java:200:214:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:Activiti-Activiti_915ceb_d4b1f8modules/activiti-engine/src/main/java/org/activiti/engine/impl/bpmn/helper/ClassDelegate.java:63:281:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:Activiti-Activiti_915ceb_d4b1f8modules/activiti-engine/src/main/java/org/activiti/engine/impl/bpmn/listener/DelegateExpressionExecutionListener.java:37:68:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:Activiti-Activiti_915ceb_d4b1f8modules/activiti-engine/src/main/java/org/activiti/engine/impl/bpmn/listener/DelegateExpressionTaskListener.java:36:66:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:Activiti-Activiti_915ceb_d4b1f8modules/activiti-engine/src/main/java/org/activiti/engine/impl/bpmn/listener/ExpressionTaskListener.java:28:41:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:Activiti-Activiti_915ceb_d4b1f8modules/activiti-engine/src/main/java/org/activiti/engine/impl/el/JuelExpression.java:39:84:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:Activiti-Activiti_915ceb_d4b1f8modules/activiti-engine/src/main/java/org/activiti/engine/impl/el/UelExpressionCondition.java:32:45:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:Activiti-Activiti_915ceb_d4b1f8modules/activiti-engine/src/main/java/org/activiti/engine/impl/form/FormPropertyImpl.java:34:72:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:Activiti-Activiti_915ceb_d4b1f8modules/activiti-engine/src/main/java/org/activiti/engine/impl/scripting/JuelScriptEngine.java:306:323:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:Activiti-Activiti_915ceb_d4b1f8modules/activiti-engine/src/main/java/org/activiti/engine/ProcessEngineConfiguration.java:658:658:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Illegal_Line_Position:Activiti-Activiti_92f723_3e6b34modules/activiti-engine/src/main/java/org/activiti/engine/impl/persistence/entity/ProcessDefinitionEntity.java:-1:-1:MF_CLASS_MASKS_FIELD -#Illegal_Line_Position:Activiti-Activiti_ad0c9e_36f30cmodules/activiti-engine/src/main/java/org/activiti/engine/impl/AbstractQuery.java:-1:-1:MF_CLASS_MASKS_FIELD -#Null_Violation_Hunk:Activiti-Activiti_ad0c9e_36f30cmodules/activiti-engine/src/main/java/org/activiti/engine/impl/bpmn/behavior/TransactionActivityBehavior.java:21:21:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:Activiti-Activiti_ad0c9e_36f30cmodules/activiti-engine/src/main/java/org/activiti/engine/impl/bpmn/helper/ClassDelegate.java:63:281:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:Activiti-Activiti_ad0c9e_36f30cmodules/activiti-engine/src/main/java/org/activiti/engine/ProcessEngineConfiguration.java:658:658:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Illegal_Line_Position:Activiti-Activiti_b41f55_209872modules/activiti-engine/src/main/java/org/activiti/engine/impl/ProcessInstanceQueryImpl.java:-1:-1:UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:Activiti-Activiti_b78775_c1a1d7modules/activiti-engine/src/main/java/org/activiti/engine/impl/db/DbSqlSessionFactory.java:217:217:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:Activiti-Activiti_ba49f7_d6278fmodules/activiti-engine/src/main/java/org/activiti/engine/impl/bpmn/behavior/UserTaskActivityBehavior.java:47:256:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:Activiti-Activiti_cac168_19fad0modules/activiti-engine/src/main/java/org/activiti/engine/impl/bpmn/behavior/IntermediateThrowNoneEventActivityBehavior.java:15:15:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:Activiti-Activiti_cac168_19fad0modules/activiti-engine/src/main/java/org/activiti/engine/impl/bpmn/behavior/ManualTaskActivityBehavior.java:23:23:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:Activiti-Activiti_cac168_19fad0modules/activiti-engine/src/main/java/org/activiti/engine/impl/bpmn/behavior/NoneStartEventActivityBehavior.java:21:21:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:Activiti-Activiti_cac168_19fad0modules/activiti-engine/src/main/java/org/activiti/engine/impl/bpmn/behavior/TaskActivityBehavior.java:22:22:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:Activiti-Activiti_d3b514_31807dmodules/activiti-engine/src/main/java/org/activiti/engine/impl/bpmn/behavior/TransactionActivityBehavior.java:19:19:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:Activiti-Activiti_d3b514_31807dmodules/activiti-engine/src/main/java/org/activiti/engine/impl/bpmn/helper/ClassDelegate.java:62:273:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:Activiti-Activiti_d626cc_0014d1modules/activiti-engine/src/main/java/org/activiti/engine/impl/bpmn/behavior/TransactionActivityBehavior.java:21:21:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:Activiti-Activiti_d626cc_0014d1modules/activiti-engine/src/main/java/org/activiti/engine/impl/bpmn/helper/ClassDelegate.java:63:281:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:Activiti-Activiti_d626cc_0014d1modules/activiti-engine/src/main/java/org/activiti/engine/impl/cmd/SubmitTaskFormCmd.java:-1:-1:MF_CLASS_MASKS_FIELD -#Null_Violation_Hunk:Activiti-Activiti_d626cc_0014d1modules/activiti-engine/src/main/java/org/activiti/engine/ProcessEngineConfiguration.java:658:658:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:Activiti-Activiti_dd5a65_8f8f09modules/activiti-engine/src/main/java/org/activiti/engine/ProcessEngineConfiguration.java:729:729:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:Activiti-Activiti_e10fb4_f9dfe0modules/activiti-engine/src/main/java/org/activiti/engine/impl/bpmn/behavior/UserTaskActivityBehavior.java:47:256:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:Activiti-Activiti_e57bd9_bc87a6modules/activiti-engine/src/main/java/org/activiti/engine/impl/bpmn/behavior/TransactionActivityBehavior.java:21:21:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:Activiti-Activiti_e57bd9_bc87a6modules/activiti-engine/src/main/java/org/activiti/engine/impl/bpmn/behavior/UserTaskActivityBehavior.java:47:256:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:Activiti-Activiti_e57bd9_bc87a6modules/activiti-engine/src/main/java/org/activiti/engine/impl/bpmn/helper/ClassDelegate.java:63:281:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:Activiti-Activiti_e57bd9_bc87a6modules/activiti-engine/src/main/java/org/activiti/engine/impl/bpmn/helper/MessageThrowingEventListener.java:-1:-1:MF_CLASS_MASKS_FIELD -#Null_Violation_Hunk:Activiti-Activiti_e57bd9_bc87a6modules/activiti-engine/src/main/java/org/activiti/engine/ProcessEngineConfiguration.java:658:658:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:Activiti-Activiti_e612fe_d18e50modules/activiti-engine/src/main/java/org/activiti/engine/ProcessEngineConfiguration.java:453:453:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:Activiti-Activiti_ed0ee2_470eb0modules/activiti-engine/src/main/java/org/activiti/engine/impl/bpmn/behavior/UserTaskActivityBehavior.java:47:256:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:Activiti-Activiti_edec53_33ff3fmodules/activiti-engine/src/main/java/org/activiti/engine/impl/bpmn/behavior/TransactionActivityBehavior.java:21:21:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:Activiti-Activiti_edec53_33ff3fmodules/activiti-engine/src/main/java/org/activiti/engine/impl/bpmn/behavior/UserTaskActivityBehavior.java:47:256:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:Activiti-Activiti_edec53_33ff3fmodules/activiti-engine/src/main/java/org/activiti/engine/impl/bpmn/helper/ClassDelegate.java:63:281:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:Activiti-Activiti_edec53_33ff3fmodules/activiti-engine/src/main/java/org/activiti/engine/impl/persistence/entity/ProcessDefinitionEntity.java:-1:-1:MF_CLASS_MASKS_FIELD -#Null_Violation_Hunk:Activiti-Activiti_edec53_33ff3fmodules/activiti-engine/src/main/java/org/activiti/engine/ProcessEngineConfiguration.java:658:658:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:Activiti-Activiti_f18be5_7a781dmodules/activiti-engine/src/main/java/org/activiti/engine/ProcessEngineConfiguration.java:587:587:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:Activiti-Activiti_f6c242_fc85e3modules/activiti-engine/src/main/java/org/activiti/engine/impl/bpmn/behavior/TransactionActivityBehavior.java:21:21:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:Activiti-Activiti_f6c242_fc85e3modules/activiti-engine/src/main/java/org/activiti/engine/impl/bpmn/helper/ClassDelegate.java:63:281:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:Activiti-Activiti_f6c242_fc85e3modules/activiti-engine/src/main/java/org/activiti/engine/impl/calendar/DurationBusinessCalendar.java:22:22:MS_SHOULD_BE_FINAL -#Illegal_Line_Position:Activiti-Activiti_f6c242_fc85e3modules/activiti-engine/src/main/java/org/activiti/engine/impl/cmd/SubmitTaskFormCmd.java:-1:-1:MF_CLASS_MASKS_FIELD -#Null_Violation_Hunk:Activiti-Activiti_f6c242_fc85e3modules/activiti-engine/src/main/java/org/activiti/engine/ProcessEngineConfiguration.java:658:658:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:Activiti-Activiti_fce83e_08c2b8modules/activiti-engine/src/main/java/org/activiti/engine/impl/bpmn/behavior/TransactionActivityBehavior.java:21:21:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:Activiti-Activiti_fce83e_08c2b8modules/activiti-engine/src/main/java/org/activiti/engine/impl/bpmn/behavior/UserTaskActivityBehavior.java:47:256:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:Activiti-Activiti_fce83e_08c2b8modules/activiti-engine/src/main/java/org/activiti/engine/impl/bpmn/helper/ClassDelegate.java:63:281:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:Activiti-Activiti_fce83e_08c2b8modules/activiti-engine/src/main/java/org/activiti/engine/impl/bpmn/helper/MessageThrowingEventListener.java:-1:-1:MF_CLASS_MASKS_FIELD -#Null_Violation_Hunk:Activiti-Activiti_fce83e_08c2b8modules/activiti-engine/src/main/java/org/activiti/engine/ProcessEngineConfiguration.java:658:658:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:Activiti-Activiti_ff016c_c16bc1modules/activiti-engine/src/main/java/org/activiti/engine/ProcessEngineConfiguration.java:502:502:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:adangel-pmd_21750b_f0049cpmd/src/main/java/net/sourceforge/pmd/cli/PMDParameters.java:95:105:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:adangel-pmd_36224a_4d9b7bpmd/src/main/java/net/sourceforge/pmd/lang/rule/xpath/AbstractXPathRuleQuery.java:71:71:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Illegal_Line_Position:adangel-pmd_3aa04a_ddacf7pmd/src/main/java/net/sourceforge/pmd/util/datasource/ReaderDataSource.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:adangel-pmd_4aee86_d52db3pmd/src/main/java/net/sourceforge/pmd/cli/PMDParameters.java:95:105:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:adangel-pmd_4f50ec_4a49e6pmd/src/main/java/net/sourceforge/pmd/lang/plsql/rule/codesize/TooManyFieldsRule.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:adangel-pmd_5f0280_dc945fpmd/src/main/java/net/sourceforge/pmd/lang/rule/xpath/AbstractXPathRuleQuery.java:71:71:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Illegal_Line_Position:adangel-pmd_782135_cb5feapmd/src/main/java/net/sourceforge/pmd/cli/PMDParameters.java:-1:-1:UWF_NULL_FIELD -#Null_Violation_Hunk:adangel-pmd_a7e4a1_28a663pmd/src/main/java/net/sourceforge/pmd/cpd/CPDConfiguration.java:66:72:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:adangel-pmd_a7e4a1_28a663pmd/src/main/java/net/sourceforge/pmd/cpd/CPDConfiguration.java:56:62:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:adangel-pmd_f0049c_6e1927pmd/src/main/java/net/sourceforge/pmd/cli/PMDParameters.java:96:107:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:aeshell-aesh_1780ee_938c76src/test/java/org/jboss/aesh/console/aesh/AeshCommandDynamicTest.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:aeshell-aesh_70b25e_cc0bbdsrc/test/java/org/jboss/aesh/console/edit/ViEditingTest.java:59:66:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:aeshell-aesh_73ca4c_d391f5src/main/java/org/jboss/aesh/graphics/Rectangle.java:48:111:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:aeshell-aesh_74793a_6d976csrc/test/java/org/jboss/aesh/console/edit/ViEditingTest.java:59:66:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:aeshell-aesh_8d5337_88718dsrc/test/java/org/jboss/aesh/cl/TestPopulator5.java:84:94:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:aeshell-aesh_8d5337_88718dsrc/test/java/org/jboss/aesh/console/aesh/AeshConsoleTest.java:152:162:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:aeshell-aesh_b8034e_c7a895src/main/java/org/jboss/aesh/util/FileLister.java:440:458:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:aeshell-aesh_d165ef_6af253src/test/java/org/jboss/aesh/cl/CommandLineParserTest.java:269:269:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:aeshell-aesh_d165ef_6af253src/test/java/org/jboss/aesh/cl/CommandLineParserTest.java:248:248:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:aeshell-aesh_d165ef_6af253src/test/java/org/jboss/aesh/cl/ParseCompleteObjectTest.java:333:333:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:aeshell-aesh_d165ef_6af253src/test/java/org/jboss/aesh/cl/ParseCompleteObjectTest.java:341:341:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:aeshell-aesh_d165ef_6af253src/test/java/org/jboss/aesh/cl/ParserGeneratorTest.java:82:82:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:aeshell-aesh_d165ef_6af253src/test/java/org/jboss/aesh/cl/ParserGeneratorTest.java:69:69:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:aeshell-aesh_e75ac3_c4be23src/test/java/org/jboss/aesh/console/redirect/ConsoleRedirectionTest.java:35:35:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:aherbert-GDSC-SMLM_ac101f_3b4baasrc/main/java/gdsc/smlm/function/gaussian/CircularGaussian2DFunction.java:59:59:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:aherbert-GDSC-SMLM_ac101f_3b4baasrc/main/java/gdsc/smlm/function/gaussian/FixedGaussian2DFunction.java:59:59:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:aherbert-GDSC-SMLM_b5a526_c39c98src/main/java/gdsc/smlm/ij/plugins/GaussianFit.java:1323:1333:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:aherbert-GDSC-SMLM_b6538a_2db8f3src/main/java/gdsc/smlm/ij/utils/Utils.java:-1:-1:MS_CANNOT_BE_FINAL -#Null_Violation_Hunk:aherbert-GDSC-SMLM_c72492_d54f5asrc/main/java/gdsc/smlm/ij/plugins/BenchmarkSpotFilter.java:98:129:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:aherbert-GDSC-SMLM_e23773_c6e912src/main/java/gdsc/smlm/fitting/function/gaussian/CircularGaussian2DFunction.java:59:59:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:aherbert-GDSC-SMLM_e23773_c6e912src/main/java/gdsc/smlm/fitting/function/gaussian/FreeCircularGaussian2DFunction.java:59:59:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Illegal_Line_Position:aherbert-GDSC-SMLM_f32d6c_47ab63src/main/java/gdsc/smlm/fitting/function/PoissonGammaGaussianLikelihoodWrapper.java:-1:-1:UWF_NULL_FIELD -#Illegal_Line_Position:aherbert-GDSC-SMLM_f32d6c_47ab63src/main/java/gdsc/smlm/fitting/function/PoissonGaussianLikelihoodWrapper.java:-1:-1:UWF_NULL_FIELD -#Null_Violation_Hunk:aherbert-GDSC-SMLM_fcfa17_5e8ac0src/main/java/gdsc/smlm/ga/ChromosomeComparator.java:21:35:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:aht-group-ofx_0e06e8_180211core/src/main/java/org/openfuxml/renderer/latex/AbstractOfxLatexRenderer.java:113:113:UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD -#Illegal_Line_Position:airlift-airlift_dd0c0a_a06897src/main/java/com/facebook/presto/Cursor.java:-1:-1:EQ_ABSTRACT_SELF -#Null_Violation_Hunk:albfan-jmeld_4ef974_ce89fcsrc/main/java/org/jmeld/ui/FolderDiffPanel.java:675:697:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:albfan-jmeld_b4f98d_c6c0ecsrc/main/java/org/jmeld/ui/action/Actions.java:51:64:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:albfan-jmeld_b4f98d_c6c0ecsrc/main/java/org/jmeld/ui/FolderDiffPanel.java:670:692:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:alibaba-druid_3eb0b6_aaf1f2src/main/java/com/alibaba/druid/sql/ast/statement/SQLJoinTableSource.java:73:73:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:alibaba-druid_b0f87d_8e7af7src/main/java/com/alibaba/druid/support/http/WebStatFilter.java:460:543:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:alibaba-druid_f9b615_79672fsrc/main/java/com/alibaba/druid/support/http/WebStatFilter.java:460:543:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:allanbank-mongodb-async-driver_222a77_541915src/main/java/com/allanbank/mongodb/Credential.java:-1:-1:SE_TRANSIENT_FIELD_NOT_RESTORED -#Illegal_Line_Position:allanbank-mongodb-async-driver_2df4f3_405b07src/main/java/com/allanbank/mongodb/MongoClientConfiguration.java:-1:-1:SE_TRANSIENT_FIELD_NOT_RESTORED -#Illegal_Line_Position:allanbank-mongodb-async-driver_4481cc_2bbf92src/main/java/com/allanbank/mongodb/bson/impl/RootDocument.java:-1:-1:SE_TRANSIENT_FIELD_NOT_RESTORED -#Illegal_Line_Position:allanbank-mongodb-async-driver_5ca324_112eb3src/main/java/com/allanbank/mongodb/bson/builder/impl/AbstractBuilder.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:allanbank-mongodb-async-driver_8cb7a0_7186dbsrc/test/java/com/allanbank/mongodb/client/callback/ReplyHandlerTest.java:316:326:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:allanbank-mongodb-async-driver_8cb7a0_7186dbsrc/test/java/com/allanbank/mongodb/client/state/ClusterPingerTest.java:1147:1158:SE_BAD_FIELD_INNER_CLASS -#Null_Violation_Hunk:allanbank-mongodb-async-driver_8cb7a0_7186dbsrc/test/java/com/allanbank/mongodb/client/state/ClusterPingerTest.java:1173:1184:SIC_INNER_SHOULD_BE_STATIC_ANON -#Null_Violation_Hunk:allanbank-mongodb-async-driver_8cb7a0_7186dbsrc/test/java/com/allanbank/mongodb/client/state/ClusterPingerTest.java:1173:1184:SE_BAD_FIELD_INNER_CLASS -#Illegal_Line_Position:allanbank-mongodb-async-driver_98a1be_348fccsrc/main/java/com/allanbank/mongodb/connection/FutureCallback.java:-1:-1:CI_CONFUSED_INHERITANCE -#Illegal_Line_Position:allanbank-mongodb-async-driver_98a1be_348fccsrc/main/java/com/allanbank/mongodb/connection/FutureCallback.java:-1:-1:CI_CONFUSED_INHERITANCE -#Illegal_Line_Position:allanbank-mongodb-async-driver_98a901_e8cac9src/main/java/com/allanbank/mongodb/builder/AggregationGeoNear.java:-1:-1:CI_CONFUSED_INHERITANCE -#Illegal_Line_Position:allanbank-mongodb-async-driver_98a901_e8cac9src/main/java/com/allanbank/mongodb/builder/GeoJson.java:-1:-1:CI_CONFUSED_INHERITANCE -#Null_Violation_Hunk:allanbank-mongodb-async-driver_98a901_e8cac9src/main/java/com/allanbank/mongodb/connection/auth/MongoDbAuthenticator.java:165:197:SIC_INNER_SHOULD_BE_STATIC_NEEDS_THIS -#Illegal_Line_Position:allanbank-mongodb-async-driver_98a901_e8cac9src/main/java/com/allanbank/mongodb/Credential.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:allanbank-mongodb-async-driver_98a901_e8cac9src/main/java/com/allanbank/mongodb/error/MongoClientClosedException.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:allanbank-mongodb-async-driver_a264bd_c87300src/main/java/com/allanbank/mongodb/builder/AggregationGeoNear.java:-1:-1:CI_CONFUSED_INHERITANCE -#Illegal_Line_Position:allanbank-mongodb-async-driver_a264bd_c87300src/main/java/com/allanbank/mongodb/builder/GeoJson.java:-1:-1:CI_CONFUSED_INHERITANCE -#Null_Violation_Hunk:allanbank-mongodb-async-driver_a264bd_c87300src/main/java/com/allanbank/mongodb/connection/auth/MongoDbAuthenticator.java:165:197:SIC_INNER_SHOULD_BE_STATIC_NEEDS_THIS -#Illegal_Line_Position:allanbank-mongodb-async-driver_a264bd_c87300src/main/java/com/allanbank/mongodb/Credential.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:allanbank-mongodb-async-driver_a264bd_c87300src/main/java/com/allanbank/mongodb/error/MongoClientClosedException.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:allanbank-mongodb-async-driver_c760f4_8c7984src/main/java/com/allanbank/mongodb/bson/io/SizeOfVisitor.java:-1:-1:CI_CONFUSED_INHERITANCE -#Illegal_Line_Position:allanbank-mongodb-async-driver_c760f4_8c7984src/main/java/com/allanbank/mongodb/commands/Distinct.java:-1:-1:CI_CONFUSED_INHERITANCE -#Illegal_Line_Position:allanbank-mongodb-async-driver_c760f4_8c7984src/main/java/com/allanbank/mongodb/commands/Find.java:-1:-1:CI_CONFUSED_INHERITANCE -#Illegal_Line_Position:allanbank-mongodb-async-driver_c760f4_8c7984src/main/java/com/allanbank/mongodb/commands/FindAndModify.java:-1:-1:CI_CONFUSED_INHERITANCE -#Illegal_Line_Position:allanbank-mongodb-async-driver_c760f4_8c7984src/main/java/com/allanbank/mongodb/commands/GroupBy.java:-1:-1:CI_CONFUSED_INHERITANCE -#Illegal_Line_Position:allanbank-mongodb-async-driver_c760f4_8c7984src/main/java/com/allanbank/mongodb/commands/MapReduce.java:-1:-1:CI_CONFUSED_INHERITANCE -#Null_Violation_Hunk:allanbank-mongodb-async-driver_c760f4_8c7984src/main/java/com/allanbank/mongodb/connection/socket/SocketConnection.java:589:610:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:allanbank-mongodb-async-driver_c760f4_8c7984src/main/java/com/allanbank/mongodb/error/ReplyException.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:allanbank-mongodb-async-driver_c760f4_8c7984src/main/java/com/allanbank/mongodb/MongoDbConfiguration.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:allanbank-mongodb-async-driver_c760f4_8c7984src/main/java/com/allanbank/mongodb/util/IOUtils.java:-1:-1:CI_CONFUSED_INHERITANCE -#Null_Violation_Hunk:allanbank-mongodb-async-driver_cfb78d_436794src/main/java/com/allanbank/mongodb/client/message/AggregateCommand.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Illegal_Line_Position:allanbank-mongodb-async-driver_e9d4ca_c3ef67src/main/java/com/allanbank/mongodb/error/ServerVersionException.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:AMOSTeam3-amos-ss15-proj3_168d1b_3dfe39src/main/java/de/fau/osr/gui/Viewer.java:164:164:NM_METHOD_NAMING_CONVENTION -#Null_Violation_Hunk:AMOSTeam3-amos-ss15-proj3_2a2a86_935ef6src/main/java/de/fau/osr/gui/GuiView.java:37:51:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:AMOSTeam3-amos-ss15-proj3_3b5c4b_34223csrc/main/java/de/fau/osr/bl/RequirementsRelation.java:68:68:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:AMOSTeam3-amos-ss15-proj3_3b5c4b_34223csrc/main/java/de/fau/osr/gui/GuiView.java:39:53:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:AMOSTeam3-amos-ss15-proj3_3b5c4b_34223csrc/main/java/de/fau/osr/gui/GuiView.java:57:82:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:AMOSTeam3-amos-ss15-proj3_3dedae_4b3055src/main/java/de/fau/osr/gui/GuiView.java:57:82:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:AMOSTeam3-amos-ss15-proj3_3dedae_4b3055src/main/java/de/fau/osr/gui/GuiView.java:39:53:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:AMOSTeam3-amos-ss15-proj3_7dae98_d2f9fasrc/main/java/de/fau/osr/gui/GuiView.java:58:83:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:AMOSTeam3-amos-ss15-proj3_9c4d0f_5ed822src/main/java/de/fau/osr/gui/GuiView.java:37:51:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:AMOSTeam3-amos-ss15-proj3_bd327f_b4b69fsrc/main/java/de/fau/osr/gui/GuiView.java:329:352:SIC_INNER_SHOULD_BE_STATIC_ANON -#Illegal_Line_Position:anba-es6draft_2c2cc7_74ade4src/main/java/com/github/anba/es6draft/repl/Repl.java:-1:-1:UWF_NULL_FIELD -#Illegal_Line_Position:anba-es6draft_328b5c_efa31bsrc/main/java/com/github/anba/es6draft/compiler/Types.java:-1:-1:NM_FIELD_NAMING_CONVENTION -#Null_Violation_Hunk:anba-es6draft_3bcb8e_1717ebsrc/main/java/com/github/anba/es6draft/runtime/objects/GlobalObject.java:43:587:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:anba-es6draft_3bcb8e_1717ebsrc/main/java/com/github/anba/es6draft/runtime/objects/RegExpPrototype.java:49:560:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:anba-es6draft_4a2d1f_d77e5bsrc/main/java/com/github/anba/es6draft/runtime/objects/promise/PromiseConstructor.java:382:382:NM_METHOD_NAMING_CONVENTION -#Null_Violation_Hunk:anba-es6draft_5a6b04_bf947fsrc/main/java/com/github/anba/es6draft/runtime/objects/ErrorConstructor.java:41:98:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:anba-es6draft_9e8242_988f13src/main/java/com/github/anba/es6draft/runtime/objects/binary/ArrayBufferConstructor.java:49:277:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:anba-es6draft_9e8242_988f13src/main/java/com/github/anba/es6draft/runtime/objects/ObjectConstructor.java:45:541:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:anba-es6draft_9e8242_988f13src/main/java/com/github/anba/es6draft/runtime/objects/RegExpConstructor.java:54:272:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:anba-es6draft_a4b45d_630e29src/main/java/com/github/anba/es6draft/runtime/types/builtins/BuiltinFunction.java:22:33:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:anba-es6draft_eb1062_0795d0src/main/java/com/github/anba/es6draft/runtime/internal/ScriptRuntime.java:2858:2858:UC_USELESS_VOID_METHOD -#Illegal_Line_Position:anba-es6draft_ee6725_3d5774src/main/java/com/github/anba/es6draft/compiler/Types.java:-1:-1:NM_FIELD_NAMING_CONVENTION -#Null_Violation_Hunk:ansell-owlapi_09174b_38e827api/src/main/java/org/semanticweb/owlapi/profiles/OWL2QLProfile.java:351:387:SE_INNER_CLASS -#Null_Violation_Hunk:ansell-owlapi_09174b_38e827api/src/main/java/org/semanticweb/owlapi/profiles/OWL2RLProfile.java:288:345:SE_INNER_CLASS -#Null_Violation_Hunk:ansell-owlapi_09174b_38e827api/src/main/java/org/semanticweb/owlapi/profiles/OWL2RLProfile.java:356:415:SE_INNER_CLASS -#Null_Violation_Hunk:ansell-owlapi_09174b_38e827api/src/main/java/org/semanticweb/owlapi/util/HornAxiomVisitorEx.java:244:285:SE_INNER_CLASS -#Null_Violation_Hunk:ansell-owlapi_09174b_38e827api/src/main/java/org/semanticweb/owlapi/util/HornAxiomVisitorEx.java:187:240:SE_INNER_CLASS 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-#Null_Violation_Hunk:ansell-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/formats/N3OntologyFormatFactory.java:12:23:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/formats/NQuadsOntologyFormatFactory.java:12:23:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/formats/NTriplesOntologyFormatFactory.java:12:23:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/formats/RdfJsonOntologyFormatFactory.java:12:20:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/formats/RDFXMLOntologyFormatFactory.java:12:23:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/formats/TrigOntologyFormatFactory.java:12:23:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/formats/TrixOntologyFormatFactory.java:12:23:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/formats/TurtleOntologyFormatFactory.java:11:22:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/rio/RioBinaryRdfOntologyStorerFactory.java:48:64:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/rio/RioBinaryRdfParserFactory.java:46:51:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/rio/RioJsonOntologyStorerFactory.java:48:64:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/rio/RioJsonParserFactory.java:49:55:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/rio/RioN3OntologyStorerFactory.java:48:63:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/rio/RioN3ParserFactory.java:49:55:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/rio/RioNQuadsOntologyStorerFactory.java:48:64:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/rio/RioNQuadsParserFactory.java:49:55:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/rio/RioNTriplesOntologyStorerFactory.java:48:64:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/rio/RioNTriplesParserFactory.java:49:55:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/rio/RioRDFXMLOntologyStorerFactory.java:48:64:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/rio/RioRDFXMLParserFactory.java:49:55:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/rio/RioTrigOntologyStorerFactory.java:48:64:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/rio/RioTrigParserFactory.java:49:55:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/rio/RioTrixOntologyStorerFactory.java:48:64:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/rio/RioTrixParserFactory.java:49:55:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/rio/RioTurtleOntologyStorerFactory.java:50:67:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/rio/RioTurtleParserFactory.java:47:52:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:ansell-owlapi_3221dd_f67b95oboformat/src/main/java/org/obolibrary/oboformat/writer/OBOFormatWriter.java:-1:-1:CI_CONFUSED_INHERITANCE -#Null_Violation_Hunk:ansell-owlapi_3ce0c8_72a28fparsers/src/main/java/de/uulm/ecs/ai/owlapi/krssparser/KRSS2OWLParserFactory.java:48:51:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:ansell-owlapi_3ce0c8_72a28fparsers/src/main/java/org/coode/owlapi/functionalparser/OWLFunctionalSyntaxParser.java:-1:-1:UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ansell-owlapi_4defcc_e501ebapi/src/main/java/org/semanticweb/owlapi/io/OWLParserFactoryImpl.java:14:31:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_4defcc_e501ebapi/src/main/java/org/semanticweb/owlapi/util/OWLOntologyStorerFactoryImpl.java:33:52:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_4defcc_e501ebrio/src/main/java/org/semanticweb/owlapi/rio/RioBinaryRdfOntologyStorerFactory.java:49:59:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_4defcc_e501ebrio/src/main/java/org/semanticweb/owlapi/rio/RioJsonOntologyStorerFactory.java:49:59:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_4defcc_e501ebrio/src/main/java/org/semanticweb/owlapi/rio/RioN3OntologyStorerFactory.java:49:58:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_4defcc_e501ebrio/src/main/java/org/semanticweb/owlapi/rio/RioNQuadsOntologyStorerFactory.java:49:59:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_4defcc_e501ebrio/src/main/java/org/semanticweb/owlapi/rio/RioNTriplesOntologyStorerFactory.java:49:59:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_4defcc_e501ebrio/src/main/java/org/semanticweb/owlapi/rio/RioRDFXMLOntologyStorerFactory.java:49:59:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_4defcc_e501ebrio/src/main/java/org/semanticweb/owlapi/rio/RioTrigOntologyStorerFactory.java:49:59:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_4defcc_e501ebrio/src/main/java/org/semanticweb/owlapi/rio/RioTrixOntologyStorerFactory.java:49:59:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_4defcc_e501ebrio/src/main/java/org/semanticweb/owlapi/rio/RioTurtleOntologyStorerFactory.java:51:61:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_570cfa_93df9fimpl/src/main/java/uk/ac/manchester/cs/owl/owlapi/OWLOntologyBuilderImpl.java:50:54:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_621073_07de69parsers/src/main/java/org/coode/owl/krssparser/KRSSOntologyFormat.java:48:51:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_621073_07de69parsers/src/main/java/org/coode/owlapi/latex/LatexOntologyFormat.java:48:51:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_621073_07de69parsers/src/main/java/uk/ac/manchester/cs/owlapi/dlsyntax/DLSyntaxHTMLOntologyFormat.java:48:51:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_621073_07de69parsers/src/main/java/uk/ac/manchester/cs/owlapi/dlsyntax/DLSyntaxOntologyFormat.java:48:51:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_70efa7_d41db2tools/src/main/java/com/clarkparsia/owlapi/modularity/locality/SyntacticLocalityEvaluator.java:878:878:NP_NONNULL_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:ansell-owlapi_70efa7_d41db2tools/src/main/java/com/clarkparsia/owlapi/modularity/locality/SyntacticLocalityEvaluator.java:1258:1258:NP_NONNULL_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:ansell-owlapi_743e4c_8a6a56impl/src/main/java/uk/ac/manchester/cs/owl/owlapi/Internals.java:1657:1691:SE_INNER_CLASS -#Null_Violation_Hunk:ansell-owlapi_743e4c_8a6a56impl/src/main/java/uk/ac/manchester/cs/owl/owlapi/Internals.java:103:137:SE_INNER_CLASS -#Null_Violation_Hunk:ansell-owlapi_743e4c_8a6a56parsers/src/main/java/org/semanticweb/owlapi/rdf/rdfxml/parser/OWLRDFConsumer.java:1372:1372:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:ansell-owlapi_777b3e_7b036eimpl/src/main/java/uk/ac/manchester/cs/owl/owlapi/Internals.java:94:128:SE_INNER_CLASS -#Illegal_Line_Position:ansell-owlapi_9c42ae_2fab17parsers/src/main/java/org/coode/owlapi/functionalparser/OWLFunctionalSyntaxParser.java:-1:-1:UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD -#Illegal_Line_Position:ansell-owlapi_b4ba8c_e696d4api/src/main/java/org/semanticweb/owlapi/io/RDFParserMetaData.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:ansell-owlapi_b4ba8c_e696d4api/src/main/java/org/semanticweb/owlapi/util/DefaultPrefixManager.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:ansell-owlapi_b4ba8c_e696d4api/src/main/java/org/semanticweb/owlapi/util/HasPriorityComparator.java:29:45:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Illegal_Line_Position:ansell-owlapi_b4ba8c_e696d4api/src/main/java/org/semanticweb/owlapi/util/HornAxiomVisitorEx.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:ansell-owlapi_b4ba8c_e696d4api/src/main/java/org/semanticweb/owlapi/util/OWLEntityComparator.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:ansell-owlapi_b4ba8c_e696d4impl/src/main/java/uk/ac/manchester/cs/owl/owlapi/Internals.java:132:162:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ansell-owlapi_b4ba8c_e696d4impl/src/main/java/uk/ac/manchester/cs/owl/owlapi/Internals.java:132:162:SE_INNER_CLASS -#Illegal_Line_Position:ansell-owlapi_b4ba8c_e696d4impl/src/main/java/uk/ac/manchester/cs/owl/owlapi/MapPointer.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:ansell-owlapi_b4ba8c_e696d4impl/src/main/java/uk/ac/manchester/cs/owl/owlapi/OWLOntologyManagerImpl.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:ansell-owlapi_b4ba8c_e696d4impl/src/main/java/uk/ac/manchester/cs/owl/owlapi/SWRLRuleImpl.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:ansell-owlapi_b4ba8c_e696d4rio/src/main/java/org/semanticweb/owlapi/formats/RioRDFOntologyFormat.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:ansell-owlapi_b4ba8c_e696d4rio/src/main/java/org/semanticweb/owlapi/rio/RioOntologyStorer.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:ansell-owlapi_b4ba8c_e696d4rio/src/main/java/org/semanticweb/owlapi/rio/RioParserImpl.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:ansell-owlapi_b4ba8c_e696d4tools/src/main/java/uk/ac/manchester/cs/owl/explanation/ordering/ExplanationOrdererImpl.java:358:371:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:ansell-owlapi_b5388d_2898c6impl/src/main/java/uk/ac/manchester/cs/owl/owlapi/SWRLRuleImpl.java:254:317:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ansell-owlapi_e14abb_cc74b3parsers/src/main/java/org/semanticweb/owlapi/rdf/RDFRendererBase.java:568:581:SIC_INNER_SHOULD_BE_STATIC_NEEDS_THIS -#Illegal_Line_Position:ansell-owlapi_e15cc9_4cd590oboformat/src/main/java/org/coode/owlapi/oboformat/OBOFormatRenderer.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:ansell-owlapi_e16e3b_b4ba8cimpl/src/main/java/uk/ac/manchester/cs/owl/owlapi/Internals.java:1353:1387:SE_INNER_CLASS -#Null_Violation_Hunk:ansell-owlapi_e3c497_ce87baimpl/src/main/java/uk/ac/manchester/cs/owl/owlapi/Internals.java:94:128:SE_INNER_CLASS -#Null_Violation_Hunk:ansell-owlapi_e3c497_ce87batools/src/main/java/com/clarkparsia/owlapi/modularity/locality/SyntacticLocalityEvaluator.java:1258:1258:NP_NONNULL_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:ansell-owlapi_e3c497_ce87batools/src/main/java/com/clarkparsia/owlapi/modularity/locality/SyntacticLocalityEvaluator.java:878:878:NP_NONNULL_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:ansell-owlapi_e7634e_edbdc7parsers/src/main/java/org/coode/owl/krssparser/KRSSOntologyFormat.java:51:55:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_e7634e_edbdc7parsers/src/main/java/org/coode/owlapi/latex/LatexAxiomsListOntologyFormat.java:52:58:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_e7634e_edbdc7parsers/src/main/java/org/coode/owlapi/latex/LatexOntologyFormat.java:51:56:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_e7634e_edbdc7parsers/src/main/java/uk/ac/manchester/cs/owlapi/dlsyntax/DLSyntaxHTMLOntologyFormat.java:51:56:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:ansell-owlapi_e7634e_edbdc7parsers/src/main/java/uk/ac/manchester/cs/owlapi/dlsyntax/DLSyntaxOntologyFormat.java:51:56:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:antoine-tran-Hedera_4363df_8b88eajava/experiments/org/hedera/io/RevisionConcatText.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:antoine-tran-Hedera_4363df_8b88eajava/experiments/org/hedera/mapreduce/WikiRevisionSolrIndexer.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:antoine-tran-Hedera_d2b63f_f829aejava/main/org/hedera/mapreduce/io/wikipedia/WikiRevisionSamplePairReader.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:apache-archiva_31515d_fdc941maven-repository-indexer/src/main/java/org/apache/maven/repository/indexing/ArtifactRepositoryIndexSearcher.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:apache-archiva_5e6fb5_398db2maven-repository-indexer/src/main/java/org/apache/maven/repository/indexing/AbstractRepositoryIndexer.java:118:118:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Illegal_Line_Position:apache-archiva_70bbe7_911feemaven-repository-reports-standard/src/main/java/org/apache/maven/repository/reporting/CachedRepositoryQueryLayer.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:apache-archiva_70bbe7_911feemaven-repository-reports-standard/src/main/java/org/apache/maven/repository/reporting/CachedRepositoryQueryLayer.java:107:107:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:apache-archiva_80fd20_2df87cmaven-repository-indexer/src/main/java/org/apache/maven/repository/indexing/AbstractRepositoryIndex.java:139:139:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:apache-archiva_f5fd46_58d71dmaven-repository-indexer/src/main/java/org/apache/maven/repository/indexing/AbstractRepositoryIndexer.java:91:91:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:apache-archiva_f5fd46_58d71dmaven-repository-indexer/src/main/java/org/apache/maven/repository/indexing/AbstractRepositoryIndexer.java:104:104:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:apache-commons-codec_d911dd_3400e5src/test/org/apache/commons/codec/binary/HexCharTest.java:122:122:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:apache-commons-codec_fee232_ae537csrc/java/org/apache/commons/codec/language/bm/PhoneticEngine.java:298:344:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:apache-commons-compress_697216_34e939src/main/java/org/apache/commons/compress/archivers/dump/DumpArchiveEntry.java:-1:-1:UWF_NULL_FIELD -#Null_Violation_Hunk:apache-commons-configuration_3696f4_894af8src/main/java/org/apache/commons/configuration/interpol/ExprLookup.java:204:220:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:apache-commons-configuration_439052_a24375src/main/java/org/apache/commons/configuration/BaseHierarchicalConfiguration.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:apache-commons-configuration_439052_a24375src/main/java/org/apache/commons/configuration/CombinedConfiguration.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:apache-commons-configuration_439052_a24375src/main/java/org/apache/commons/configuration/DataConfiguration.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:apache-commons-configuration_439052_a24375src/main/java/org/apache/commons/configuration/DynamicCombinedConfiguration.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:apache-commons-configuration_439052_a24375src/main/java/org/apache/commons/configuration/plist/XMLPropertyListConfiguration.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:apache-commons-configuration_439052_a24375src/main/java/org/apache/commons/configuration/SubnodeConfiguration.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:apache-commons-configuration_439052_a24375src/main/java/org/apache/commons/configuration/XMLConfiguration.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:apache-commons-configuration_6cb034_374421src/main/java/org/apache/commons/configuration2/plist/PropertyListParser.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:apache-commons-configuration_8c42aa_8b26e6src/java/org/apache/commons/configuration/plist/XMLPropertyListConfiguration.java:199:203:SIC_INNER_SHOULD_BE_STATIC_ANON -#Null_Violation_Hunk:apache-commons-dbcp_37c3dd_5d4ab5src/java/org/apache/commons/dbcp2/BasicDataSource.java:196:196:IS2_INCONSISTENT_SYNC -#Null_Violation_Hunk:apache-commons-dbcp_37c3dd_5d4ab5src/java/org/apache/commons/dbcp2/BasicDataSource.java:197:197:IS2_INCONSISTENT_SYNC -#Illegal_Line_Position:apache-commons-fileupload_0ddfcd_4a1e17src/main/java/org/apache/commons/fileupload/util/mime/QuotedPrintableDecoder.java:-1:-1:CI_CONFUSED_INHERITANCE -#Illegal_Line_Position:apache-commons-fileupload_364a50_be46easrc/main/java/org/apache/commons/fileupload/util/mime/QuotedPrintableDecoder.java:-1:-1:CI_CONFUSED_INHERITANCE -#Null_Violation_Hunk:apache-commons-lang_4975b8_618361src/test/java/org/apache/commons/lang3/concurrent/AtomicSafeInitializerTest.java:241:272:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:apache-commons-lang_66e42d_249788src/main/java/org/apache/commons/lang3/text/ExtendedMessageFormat.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:apache-commons-lang_6e4a19_a926c7src/java/org/apache/commons/lang3/Range.java:331:356:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:apache-commons-lang_7fac28_7b6c2csrc/test/java/org/apache/commons/lang3/builder/ToStringStyleTest.java:30:30:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:apache-commons-lang_c21e66_509e3dsrc/java/org/apache/commons/lang/text/ExtendedMessageFormat.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:apache-commons-lang_ef07c7_2842fdsrc/main/java/org/apache/commons/lang/text/ExtendedMessageFormat.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:apache-commons-math_389aa0_d868dbsrc/main/java/org/apache/commons/math3/optimization/GoalType.java:28:34:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:apache-commons-math_b7555d_166cfcsrc/main/java/org/apache/commons/math3/stat/descriptive/DescriptiveStatistics.java:770:813:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:apache-ddlutils_ec20f7_e73adesrc/java/org/apache/ddlutils/util/StringUtilsExt.java:27:40:NM_SAME_SIMPLE_NAME_AS_SUPERCLASS -#Null_Violation_Hunk:apache-directory-fortress-core_2ae412_08ea40src/main/java/org/apache/directory/fortress/core/rbac/PwPolicy.java:331:777:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:apache-directory-fortress-core_2ae412_08ea40src/main/java/org/apache/directory/fortress/core/rbac/Relationship.java:42:131:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:apache-directory-fortress-core_2ae412_08ea40src/main/java/org/apache/directory/fortress/core/rbac/UserRole.java:101:616:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:apache-directory-fortress-core_9bb82e_a4c5e2src/main/java/org/apache/directory/fortress/core/rbac/OrgUnit.java:185:414:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:apache-directory-fortress-core_a6c5f7_ea2a82src/main/java/us/jts/fortress/rbac/UserRole.java:74:503:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:apache-directory-shared_2b06ed_2fb0d2ldap/src/main/java/org/apache/directory/shared/ldap/aci/UserClass.java:211:211:HE_EQUALS_USE_HASHCODE -#Null_Violation_Hunk:apache-directory-shared_2b06ed_2fb0d2ldap/src/main/java/org/apache/directory/shared/ldap/aci/UserClass.java:240:240:HE_EQUALS_USE_HASHCODE -#Null_Violation_Hunk:apache-directory-shared_7e36ad_3db7f6ldap/src/main/java/org/apache/directory/shared/ldap/aci/ProtectedItem.java:342:342:HE_EQUALS_USE_HASHCODE -#Null_Violation_Hunk:apache-directory-shared_7e36ad_3db7f6ldap/src/main/java/org/apache/directory/shared/ldap/aci/ProtectedItem.java:311:311:HE_EQUALS_USE_HASHCODE -#Null_Violation_Hunk:apache-directory-shared_7e36ad_3db7f6ldap/src/main/java/org/apache/directory/shared/ldap/aci/ProtectedItem.java:285:285:HE_EQUALS_USE_HASHCODE -#Null_Violation_Hunk:apache-hadoop-common_1cb793_96e371src/main/java/org/apache/hadoop/hbase/regionserver/CoprocessorHost.java:64:71:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Illegal_Line_Position:apache-hadoop-common_6ceadd_221e8asrc/main/java/org/apache/hadoop/hbase/avro/generated/AIllegalArgument.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:apache-hadoop-common_6ceadd_221e8asrc/main/java/org/apache/hadoop/hbase/avro/generated/AIOError.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:apache-hadoop-common_6ceadd_221e8asrc/main/java/org/apache/hadoop/hbase/avro/generated/AMasterNotRunning.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:apache-hadoop-common_c8529f_9b0a00src/main/java/org/apache/hadoop/hbase/regionserver/MemStoreFlusher.java:341:341:EQ_COMPARETO_USE_OBJECT_EQUALS -#Null_Violation_Hunk:apache-hadoop-common_d1966a_122939src/test/java/org/apache/hadoop/hbase/master/TestCatalogJanitor.java:122:151:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:apache-httpclient_137da8_4f6599module-client/src/main/java/org/apache/http/conn/ssl/X509HostnameVerifier.java:-1:-1:NM_SAME_SIMPLE_NAME_AS_INTERFACE -#Null_Violation_Hunk:apache-httpclient_18e1a1_20680fhttpclient/src/main/java/org/apache/http/impl/client/DefaultRequestDirector.java:162:162:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:apache-httpclient_3dde3c_137da8module-client/src/main/java/org/apache/http/cookie/CookieIdentityComparator.java:46:62:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:apache-httpclient_3dde3c_137da8module-client/src/main/java/org/apache/http/cookie/CookiePathComparator.java:50:74:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Illegal_Line_Position:apache-httpclient_b1134f_e2da28httpclient-cache/src/main/java/org/apache/http/impl/client/cache/FileResource.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:apache-mahout_0853c0_b988c4mr/src/main/java/org/apache/mahout/cf/taste/impl/common/FixedRunningAverage.java:34:80:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:apache-mahout_0853c0_b988c4mr/src/main/java/org/apache/mahout/cf/taste/impl/model/BooleanPreference.java:34:61:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:apache-mahout_0853c0_b988c4mr/src/main/java/org/apache/mahout/cf/taste/impl/model/GenericPreference.java:37:67:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:apache-mina-sshd_231556_304d84src/main/java/org/apache/sshd/client/kex/AbstractDHGClient.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:apache-pdfbox_10f72d_83b29apdfbox/src/main/java/org/apache/pdfbox/pdmodel/font/FileSystemFontProvider.java:63:175:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:apache-pdfbox_3ff6e6_d20b9epdfbox/src/main/java/org/apache/pdfbox/rendering/PageDrawer.java:868:872:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:apache-pdfbox_4d4e29_e9e653preflight/src/main/java/org/apache/pdfbox/preflight/font/descriptor/FontDescriptorHelper.java:55:55:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:apache-pdfbox_571fa0_b31040tools/src/main/java/org/apache/pdfbox/tools/pdfdebugger/flagbitspane/FlagBitsPane.java:172:172:SIC_INNER_SHOULD_BE_STATIC_ANON -#Null_Violation_Hunk:apache-pdfbox_7389bb_90c4b7pdfbox/src/main/java/org/apache/pdfbox/pdmodel/interactive/form/FieldUtils.java:81:86:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:apache-pdfbox_7389bb_90c4b7pdfbox/src/main/java/org/apache/pdfbox/pdmodel/interactive/form/FieldUtils.java:69:74:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:apache-pdfbox_b910b0_89dff6fontbox/src/main/java/org/apache/fontbox/util/BoundingBox.java:226:226:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:apache-pdfbox_f11a53_2b9c5atools/src/main/java/org/apache/pdfbox/tools/pdfdebugger/fontencodingpane/FontEncodingView.java:122:140:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:apache-pdfbox_fa9321_0269fftools/src/main/java/org/apache/pdfbox/tools/pdfdebugger/hexviewer/HexEditor.java:106:110:SIC_INNER_SHOULD_BE_STATIC_ANON -#Illegal_Line_Position:apache-wss4j_afb2b1_63f1bfsrc/org/apache/ws/security/components/crypto/CryptoBase.java:-1:-1:MS_PKGPROTECT -#Illegal_Line_Position:aranega-testgen_173978_518412src/main/java/simple/mypackage/z.java:-1:-1:UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD -#Illegal_Line_Position:ArcBees-gwtquery_1094cf_e163e1gwtquery-core/src/main/java/com/google/gwt/query/client/plugins/effects/ClipAnimation.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:ArcBees-gwtquery_4b3e9b_65b737gwtquery-core/src/main/java/com/google/gwt/query/client/css/CSS.java:106:106:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ArcBees-gwtquery_4b3e9b_65b737gwtquery-core/src/main/java/com/google/gwt/query/client/css/CSS.java:108:108:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ArcBees-gwtquery_4b3e9b_65b737gwtquery-core/src/main/java/com/google/gwt/query/client/css/CSS.java:105:105:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ArcBees-gwtquery_4b3e9b_65b737gwtquery-core/src/main/java/com/google/gwt/query/client/css/CSS.java:34:34:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ArcBees-gwtquery_4b3e9b_65b737gwtquery-core/src/main/java/com/google/gwt/query/client/css/CSS.java:44:44:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Illegal_Line_Position:ArcBees-gwtquery_4be89b_8a4528gwtquery-core/src/main/java/com/google/gwt/query/client/css/CSS.java:-1:-1:MS_PKGPROTECT -#Null_Violation_Hunk:ArcBees-gwtquery_4be89b_8a4528gwtquery-core/src/main/java/com/google/gwt/query/client/css/CSS.java:72:72:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ArcBees-gwtquery_4be89b_8a4528gwtquery-core/src/main/java/com/google/gwt/query/client/css/CSS.java:32:32:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ArcBees-gwtquery_4be89b_8a4528gwtquery-core/src/main/java/com/google/gwt/query/client/css/CSS.java:30:30:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ArcBees-gwtquery_4be89b_8a4528gwtquery-core/src/main/java/com/google/gwt/query/client/css/CSS.java:58:58:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ArcBees-gwtquery_4be89b_8a4528gwtquery-core/src/main/java/com/google/gwt/query/client/css/CSS.java:28:28:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ArcBees-gwtquery_4be89b_8a4528gwtquery-core/src/main/java/com/google/gwt/query/client/css/CSS.java:73:73:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ArcBees-gwtquery_4be89b_8a4528gwtquery-core/src/main/java/com/google/gwt/query/client/css/CSS.java:35:35:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ArcBees-gwtquery_4be89b_8a4528gwtquery-core/src/main/java/com/google/gwt/query/client/css/CSS.java:69:69:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ArcBees-gwtquery_4be89b_8a4528gwtquery-core/src/main/java/com/google/gwt/query/client/css/CSS.java:40:40:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ArcBees-gwtquery_4be89b_8a4528gwtquery-core/src/main/java/com/google/gwt/query/client/css/CSS.java:66:66:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ArcBees-gwtquery_4be89b_8a4528gwtquery-core/src/main/java/com/google/gwt/query/client/css/CSS.java:83:83:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ArcBees-gwtquery_4be89b_8a4528gwtquery-core/src/main/java/com/google/gwt/query/client/css/CSS.java:62:62:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ArcBees-gwtquery_4be89b_8a4528gwtquery-core/src/main/java/com/google/gwt/query/client/css/CSS.java:67:67:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ArcBees-gwtquery_4be89b_8a4528gwtquery-core/src/main/java/com/google/gwt/query/client/css/CSS.java:74:74:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ArcBees-gwtquery_4be89b_8a4528gwtquery-core/src/main/java/com/google/gwt/query/client/css/CSS.java:45:45:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ArcBees-gwtquery_4be89b_8a4528gwtquery-core/src/main/java/com/google/gwt/query/client/css/CSS.java:43:43:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ArcBees-gwtquery_4be89b_8a4528gwtquery-core/src/main/java/com/google/gwt/query/client/css/CSS.java:59:59:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ArcBees-gwtquery_4be89b_8a4528gwtquery-core/src/main/java/com/google/gwt/query/client/css/CSS.java:76:76:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ArcBees-gwtquery_4be89b_8a4528gwtquery-core/src/main/java/com/google/gwt/query/client/css/CSS.java:65:65:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ArcBees-gwtquery_4be89b_8a4528gwtquery-core/src/main/java/com/google/gwt/query/client/css/CSS.java:60:60:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ArcBees-gwtquery_4be89b_8a4528gwtquery-core/src/main/java/com/google/gwt/query/client/css/CSS.java:71:71:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ArcBees-gwtquery_4be89b_8a4528gwtquery-core/src/main/java/com/google/gwt/query/client/css/CSS.java:38:38:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ArcBees-gwtquery_4be89b_8a4528gwtquery-core/src/main/java/com/google/gwt/query/client/css/CSS.java:33:33:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ArcBees-gwtquery_4be89b_8a4528gwtquery-core/src/main/java/com/google/gwt/query/client/css/CSS.java:42:42:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ArcBees-gwtquery_4be89b_8a4528gwtquery-core/src/main/java/com/google/gwt/query/client/css/CSS.java:37:37:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ArcBees-gwtquery_4be89b_8a4528gwtquery-core/src/main/java/com/google/gwt/query/client/css/CSS.java:79:79:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ArcBees-gwtquery_4be89b_8a4528gwtquery-core/src/main/java/com/google/gwt/query/client/css/CSS.java:78:78:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ArcBees-gwtquery_4be89b_8a4528gwtquery-core/src/main/java/com/google/gwt/query/client/css/CSS.java:64:64:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ArcBees-gwtquery_4be89b_8a4528gwtquery-core/src/main/java/com/google/gwt/query/client/css/CSS.java:81:81:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ArcBees-gwtquery_4be89b_8a4528gwtquery-core/src/main/java/com/google/gwt/query/client/css/CSS.java:84:84:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ArcBees-gwtquery_4d28be_693bebgwtquery-core/src/main/java/com/google/gwt/query/client/Function.java:221:221:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:ArcBees-gwtquery_4d28be_693bebgwtquery-core/src/main/java/com/google/gwt/query/client/Function.java:213:213:UC_USELESS_VOID_METHOD -#Illegal_Line_Position:ArcBees-gwtquery_7955d1_2b45e3gwtquery-core/src/main/java/com/google/gwt/query/client/impl/ConsoleBrowser.java:-1:-1:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:ArcBees-gwtquery_8a4528_ee7b59gwtquery-core/src/main/java/com/google/gwt/query/client/css/CSS.java:107:107:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ArcBees-gwtquery_8a4528_ee7b59gwtquery-core/src/main/java/com/google/gwt/query/client/css/CSS.java:104:104:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Illegal_Line_Position:ArcBees-gwtquery_8fa8fa_ac3521gwtquery-core/src/main/java/com/google/gwt/query/client/GQuery.java:-1:-1:NM_FIELD_NAMING_CONVENTION -#Null_Violation_Hunk:ArcBees-gwtquery_9b5ecd_5485f3gwtquery-core/src/main/java/com/google/gwt/query/client/plugins/Effects.java:121:121:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:ArcBees-gwtquery_a82893_aca58cgwtquery-core/src/main/super/com/google/gwt/query/super/com/google/gwt/query/client/GQ.java:46:47:LI_LAZY_INIT_STATIC -#Null_Violation_Hunk:ArcBees-gwtquery_bb71ac_5ae898gwtquery-core/src/main/java/com/google/gwt/query/client/Function.java:89:89:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:ArcBees-gwtquery_bb71ac_5ae898gwtquery-core/src/main/java/com/google/gwt/query/client/Function.java:85:85:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:ArcBees-gwtquery_c05283_678d43gwtquery-core/src/main/super/com/google/gwt/query/super/com/google/gwt/query/client/GQ.java:29:29:MS_SHOULD_BE_FINAL -#Illegal_Line_Position:ArcBees-gwtquery_fd07d4_c5eadegwtquery-core/src/main/java/com/google/gwt/query/client/plugins/effects/ClipAnimation.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:arjovanramshorst-bubble-bobble-sem_1743d6_8863cacore/src/main/java/sem/group15/bubblebobble/core/objects/BubbleObject.java:67:67:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:arjovanramshorst-bubble-bobble-sem_59671b_4c1e10core/src/main/java/sem/group15/bubblebobble/core/LogicController.java:71:71:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:arjovanramshorst-bubble-bobble-sem_5d8bd5_595483core/src/main/java/sem/group15/bubblebobble/core/objects/FilledBubbleObject.java:46:46:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:arjovanramshorst-bubble-bobble-sem_886026_e02d08core/src/main/java/sem/group15/bubblebobble/core/objects/BubbleObject.java:72:72:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:arjovanramshorst-bubble-bobble-sem_a5318e_e7546bcore/src/main/java/sem/group15/bubblebobble/core/objects/FilledBubbleObject.java:46:46:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:arjovanramshorst-bubble-bobble-sem_c7ed48_9b5b95core/src/main/java/sem/group15/bubblebobble/core/objects/BubbleObject.java:72:72:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:arjovanramshorst-bubble-bobble-sem_cddb27_da5020core/src/main/java/sem/group15/bubblebobble/core/objects/BubbleObject.java:69:69:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:arjovanramshorst-bubble-bobble-sem_cfe14b_7fcbb4core/src/main/java/sem/group15/bubblebobble/core/objects/BubbleObject.java:67:67:UC_USELESS_VOID_METHOD -#Illegal_Line_Position:arjovanramshorst-bubble-bobble-sem_e7546b_aaa245core/src/main/java/sem/group15/bubblebobble/core/BubbleBobble.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:arjovanramshorst-bubble-bobble-sem_ede5e2_7d86ddcore/src/main/java/sem/group15/bubblebobble/core/objects/FilledBubbleObject.java:46:46:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:arjovanramshorst-bubble-bobble-sem_f10739_886026core/src/main/java/sem/group15/bubblebobble/core/objects/FilledBubbleObject.java:47:47:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:ATLauncher-ATLauncher_ae88a5_bf63absrc/main/java/com/atlauncher/workers/InstanceInstaller.java:348:348:UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:AugGroup-hr-db_411aa8_ad1a58src/main/java/com/aug/hrdb/interceptor/AuditInterceptor.java:26:26:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:AugGroup-hr-db_d3b9d5_ea245dsrc/main/java/com/aug/hrdb/interceptor/AuditInterceptor.java:26:26:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:basho-riak-java-client_04ac47_673538src/main/java/com/basho/riak/client/mapreduce/MapReduceBuilder.java:256:256:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:basho-riak-java-client_1bb688_fd4c6dsrc/main/java/com/basho/riak/client/query/RiakObject.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:basho-riak-java-client_3c9bca_95c964src/main/java/com/basho/riak/pbc/RiakConnection.java:-1:-1:VO_VOLATILE_REFERENCE_TO_ARRAY -#Null_Violation_Hunk:basho-riak-java-client_4d59c2_cb2a5csrc/main/java/com/basho/riak/client/operations/StoreObject.java:41:41:UWF_UNWRITTEN_FIELD -#Illegal_Line_Position:basho-riak-java-client_734fb7_9a398bsrc/main/java/com/basho/riak/client/DefaultRiakObject.java:-1:-1:VO_VOLATILE_REFERENCE_TO_ARRAY -#Illegal_Line_Position:basho-riak-java-client_75f021_79a975src/main/java/com/basho/riak/client/core/ConnectionPool.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:basho-riak-java-client_c2dabe_b862e7src/main/java/com/basho/riak/client/util/BranchableInputStream.java:-1:-1:VO_VOLATILE_REFERENCE_TO_ARRAY -#Illegal_Line_Position:basho-riak-java-client_d3cc30_d53f18src/main/java/com/basho/riak/client/query/RiakObject.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:basho-riak-java-client_dd1d26_7a6004src/main/java/com/basho/riak/client/query/RiakObject.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:BattleNight-BattleNight-Core_1ce264_a60ea2src/main/java/me/limebyte/battlenight/core/BattleNight.java:-1:-1:MS_CANNOT_BE_FINAL -#Illegal_Line_Position:BattleNight-BattleNight-Core_1ce264_a60ea2src/main/java/me/limebyte/battlenight/core/util/Configuration.java:-1:-1:MS_PKGPROTECT -#Illegal_Line_Position:BattleNight-BattleNight-Core_295ce8_e9231asrc/main/java/me/limebyte/battlenight/core/BattleNight.java:-1:-1:MS_CANNOT_BE_FINAL -#Illegal_Line_Position:BattleNight-BattleNight-Core_295ce8_e9231asrc/main/java/me/limebyte/battlenight/core/util/Configuration.java:-1:-1:MS_PKGPROTECT -#Illegal_Line_Position:BattleNight-BattleNight-Core_3a4356_666d6csrc/main/java/me/limebyte/battlenight/core/BattleNight.java:-1:-1:MS_CANNOT_BE_FINAL -#Illegal_Line_Position:BattleNight-BattleNight-Core_53ed8e_b6dbd1src/main/java/me/limebyte/battlenight/core/BattleNight.java:-1:-1:MS_CANNOT_BE_FINAL -#Illegal_Line_Position:BattleNight-BattleNight-Core_e9231a_a63af4src/main/java/me/limebyte/battlenight/core/BattleNight.java:-1:-1:MS_CANNOT_BE_FINAL -#Illegal_Line_Position:BattleNight-BattleNight-Core_e9231a_a63af4src/main/java/me/limebyte/battlenight/core/util/Configuration.java:-1:-1:UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD -#Illegal_Line_Position:BattleNight-BattleNight-Core_e9231a_a63af4src/main/java/me/limebyte/battlenight/core/util/Configuration.java:-1:-1:MS_SHOULD_BE_FINAL -#Illegal_Line_Position:bcdev-ceres_aa498c_c8f4c1ceres-binding/src/main/java/com/bc/ceres/binding/swing/internal/BindingImpl.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:belaban-JGroups_09ee63_c9a699src/org/jgroups/protocols/TP.java:153:153:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:belaban-JGroups_09ee63_c9a699src/org/jgroups/protocols/TP.java:136:136:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:belaban-JGroups_09ee63_c9a699src/org/jgroups/protocols/TP.java:278:278:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:belaban-JGroups_3d6cda_0add49src/org/jgroups/protocols/TP.java:278:278:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:belaban-JGroups_3d6cda_0add49src/org/jgroups/protocols/TP.java:136:136:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:belaban-JGroups_4a4c98_7d3303src/org/jgroups/protocols/TP.java:153:153:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:belaban-JGroups_4a4c98_7d3303src/org/jgroups/protocols/TP.java:278:278:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:belaban-JGroups_4a4c98_7d3303src/org/jgroups/protocols/TP.java:136:136:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:belaban-JGroups_6c80eb_1f6473src/org/jgroups/util/ProxyAddress.java:12:12:EQ_COMPARETO_USE_OBJECT_EQUALS -#Illegal_Line_Position:belaban-JGroups_8797b1_db28afsrc/org/jgroups/auth/X509Token.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:belaban-JGroups_8bad26_000902src/org/jgroups/protocols/TP.java:153:153:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:belaban-JGroups_8bad26_000902src/org/jgroups/protocols/TP.java:136:136:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:belaban-JGroups_8bad26_000902src/org/jgroups/protocols/TP.java:278:278:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:belaban-JGroups_a47814_f79552src/org/jgroups/util/MutableDigest.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Illegal_Line_Position:belaban-JGroups_b7528c_f43e3bsrc/org/jgroups/blocks/executor/ExecutionService.java:-1:-1:SE_TRANSIENT_FIELD_NOT_RESTORED -#Null_Violation_Hunk:belaban-JGroups_e1ca60_6bc167src/org/jgroups/protocols/TP.java:153:153:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:belaban-JGroups_e1ca60_6bc167src/org/jgroups/protocols/TP.java:136:136:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:belaban-JGroups_e1ca60_6bc167src/org/jgroups/protocols/TP.java:278:278:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:bguerout-jongo_554fe7_88660esrc/main/java/org/jongo/marshall/jackson/JongoAnnotationIntrospector.java:25:30:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:bguerout-jongo_678169_b987dfsrc/main/java/org/jongo/marshall/jackson/JongoAnnotationIntrospector.java:25:30:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:bigdataops-bgpcep_1dca38_71f45fframework/src/main/java/org/opendaylight/protocol/framework/DispatcherImpl.java:104:112:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:biojava-biojava_2b3cd0_8eda39biojava3-structure/src/main/java/org/biojava/bio/structure/io/PDBFileParser.java:2877:2963:SIC_INNER_SHOULD_BE_STATIC_NEEDS_THIS -#Null_Violation_Hunk:biojava-biojava_37c190_836b26biojava3-structure/src/main/java/org/biojava/bio/structure/align/fatcat/FatCatUserArgumentProcessor.java:36:36:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:biojava-biojava_478a2f_33b355biojava3-structure/src/main/java/org/biojava/bio/structure/align/fatcat/FatCatUserArgumentProcessor.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:biojava-biojava_478a2f_33b355biojava3-structure/src/main/java/org/biojava/bio/structure/align/fatcat/FatCatUserArgumentProcessor.java:36:36:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:biojava-biojava_4c225f_c673dbbiojava3-structure/src/main/java/org/biojava/bio/structure/align/fatcat/FatCatUserArgumentProcessor.java:36:36:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:biojava-biojava_7f98fc_60643ebiojava3-survival/src/main/java/org/biojava3/survival/kaplanmeier/figure/ExpressionFigure.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:biojava-biojava_8f86c4_b3c663biojava3-structure/src/main/java/org/biojava/bio/structure/io/PDBFileParser.java:2097:2097:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:biojava-biojava_a591c7_d6ff9fbiojava3-structure/src/main/java/org/biojava/bio/structure/io/PDBFileParser.java:2881:2986:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:biojava-biojava_bbad75_8cd0a2biojava3-structure/src/main/java/org/biojava/bio/structure/align/fatcat/FatCatUserArgumentProcessor.java:36:36:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:biojava-biojava_c01faa_1fd8e7biojava3-aa-prop/src/main/java/org/biojava3/aaproperties/Constraints.java:-1:-1:MS_PKGPROTECT -#Null_Violation_Hunk:biojava-biojava_d9b9e0_20b4eebiojava3-aa-prop/src/main/java/org/biojava3/aaproperties/Constraints.java:158:158:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:biojava-biojava_de5422_69b1edbiojava3-structure/src/main/java/org/biojava/bio/structure/align/fatcat/FatCatUserArgumentProcessor.java:36:36:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:bitcoinj-bitcoinj_3caa41_a95518src/com/google/bitcoin/core/InventoryMessage.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:bitcoinj-bitcoinj_48fce9_ddb167src/com/google/bitcoin/core/Peer.java:261:310:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:bitcoinj-bitcoinj_48fce9_ddb167src/com/google/bitcoin/store/BoundedOverheadBlockStore.java:76:138:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:bitcoinj-bitcoinj_a5fc1c_0a4dbbsrc/com/google/bitcoin/core/Wallet.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:bitcoinj-bitcoinj_a86ca7_216debexamples/com/google/bitcoin/examples/toywallet/ToyWallet.java:238:267:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:bitcoinj-bitcoinj_dff3b2_3a463esrc/com/google/bitcoin/core/Transaction.java:-1:-1:SE_TRANSIENT_FIELD_NOT_RESTORED -#Illegal_Line_Position:bitcoinj-bitcoinj_dff3b2_3a463esrc/com/google/bitcoin/core/TransactionOutput.java:-1:-1:SE_TRANSIENT_FIELD_NOT_RESTORED -#Null_Violation_Hunk:bitcoinj-bitcoinj_dff3b2_3a463esrc/com/google/bitcoin/core/VersionAck.java:24:36:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:Bombe-Sone_0797df_a80191src/main/java/net/pterodactylus/sone/data/impl/IdOnlySone.java:27:27:EQ_COMPARETO_USE_OBJECT_EQUALS -#Null_Violation_Hunk:Bombe-Sone_0cefad_cb0161src/main/java/net/pterodactylus/sone/data/impl/IdOnlySone.java:27:27:EQ_COMPARETO_USE_OBJECT_EQUALS -#Null_Violation_Hunk:Bombe-Sone_7a858f_4804cfsrc/main/java/net/pterodactylus/sone/data/impl/IdOnlySone.java:27:27:EQ_COMPARETO_USE_OBJECT_EQUALS -#Null_Violation_Hunk:Bombe-Sone_cf563e_ee05a6src/main/java/net/pterodactylus/sone/freenet/wot/DefaultOwnIdentity.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:bpiwowar-experimaestro_5cb120_c00d92src/main/java/sf/net/experimaestro/manager/js/JSBaseObject.java:249:256:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:bpiwowar-experimaestro_5fbcd0_2839f8src/main/java/sf/net/experimaestro/server/JsonRPCServlet.java:80:165:SIC_INNER_SHOULD_BE_STATIC_NEEDS_THIS -#Null_Violation_Hunk:BroadleafCommerce-BroadleafCommerce_413685_612fe8common/src/main/java/org/broadleafcommerce/common/resource/GeneratedResource.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:BroadleafCommerce-BroadleafCommerce_413685_612fe8common/src/main/java/org/broadleafcommerce/common/web/BroadleafRequestFilter.java:49:49:MS_SHOULD_BE_FINAL -#Null_Violation_Hunk:BroadleafCommerce-BroadleafCommerce_413685_612fe8core/broadleaf-framework/src/main/java/org/broadleafcommerce/core/search/service/solr/SolrIndexServiceImpl.java:59:59:MS_SHOULD_BE_FINAL -#Illegal_Line_Position:brooklyncentral-clocker_6a2ab7_0badcbdist/src/main/java/brooklyn/clocker/example/MicroServiceDockerfileImpl.java:-1:-1:UWF_NULL_FIELD -#Illegal_Line_Position:brooklyncentral-clocker_80c8d8_d2873ddist/src/main/java/brooklyn/clocker/example/MicroServiceDockerfileImpl.java:-1:-1:UWF_NULL_FIELD -#Illegal_Line_Position:brooklyncentral-clocker_dae8d9_b4e125dist/src/main/java/brooklyn/clocker/example/MicroServiceDockerfileImpl.java:-1:-1:UWF_NULL_FIELD -#Illegal_Line_Position:buddycloud-buddycloud-server-java_16c170_750817src/main/java/org/buddycloud/channelserver/packetprocessor/iq/namespace/pubsub/PubSubElementProcessorAbstract.java:-1:-1:UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:buddycloud-buddycloud-server-java_4263c5_b1f9a5src/main/java/org/buddycloud/channelserver/channel/node/configuration/field/AccessModel.java:13:20:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:buddycloud-buddycloud-server-java_4263c5_b1f9a5src/main/java/org/buddycloud/channelserver/channel/node/configuration/field/ChannelType.java:13:20:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:buddycloud-buddycloud-server-java_4263c5_b1f9a5src/main/java/org/buddycloud/channelserver/channel/node/configuration/field/Field.java:17:17:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:buddycloud-buddycloud-server-java_4263c5_b1f9a5src/main/java/org/buddycloud/channelserver/channel/node/configuration/field/Field.java:16:16:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:buddycloud-buddycloud-server-java_4263c5_b1f9a5src/main/java/org/buddycloud/channelserver/db/jdbc/JDBCNodeStore.java:1763:1834:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:buddycloud-buddycloud-server-java_4263c5_b1f9a5src/main/java/org/buddycloud/channelserver/packetprocessor/iq/namespace/AbstractNamespace.java:99:99:UPM_UNCALLED_PRIVATE_METHOD -#Illegal_Line_Position:buddycloud-buddycloud-server-java_4263c5_b1f9a5src/main/java/org/buddycloud/channelserver/packetprocessor/iq/namespace/discoitems/DiscoItemsGet.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:buddycloud-buddycloud-server-java_4263c5_b1f9a5src/main/java/org/buddycloud/channelserver/packetprocessor/iq/namespace/discoitems/DiscoResult.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:buddycloud-buddycloud-server-java_4263c5_b1f9a5src/main/java/org/buddycloud/channelserver/packetprocessor/iq/namespace/pubsub/get/RepliesGet.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:buddycloud-buddycloud-server-java_4263c5_b1f9a5src/main/java/org/buddycloud/channelserver/packetprocessor/iq/namespace/pubsub/get/ThreadGet.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:buddycloud-buddycloud-server-java_581f6a_9b0628src/main/java/org/buddycloud/channelserver/packetprocessor/iq/namespace/pubsub/get/NodeConfigureGet.java:-1:-1:MF_CLASS_MASKS_FIELD -#Null_Violation_Hunk:Bukkit-Bukkit_0b3a14_184d57src/main/java/org/bukkit/fillr/Fillr.java:9:9:MS_SHOULD_BE_FINAL -#Null_Violation_Hunk:Bukkit-Bukkit_105925_8e142esrc/main/java/org/bukkit/fillr/Fillr.java:9:9:MS_SHOULD_BE_FINAL -#Illegal_Line_Position:Bukkit-Bukkit_219d00_ca71besrc/main/java/org/bukkit/event/block/BlockBreakEvent.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_219d00_ca71besrc/main/java/org/bukkit/event/block/BlockDamageEvent.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_219d00_ca71besrc/main/java/org/bukkit/event/block/BlockDispenseEvent.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_219d00_ca71besrc/main/java/org/bukkit/event/block/BlockFormEvent.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_219d00_ca71besrc/main/java/org/bukkit/event/block/BlockFromToEvent.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_219d00_ca71besrc/main/java/org/bukkit/event/block/BlockIgniteEvent.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_219d00_ca71besrc/main/java/org/bukkit/event/block/BlockPistonExtendEvent.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_219d00_ca71besrc/main/java/org/bukkit/event/block/BlockSpreadEvent.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_219d00_ca71besrc/main/java/org/bukkit/event/enchantment/EnchantItemEvent.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_219d00_ca71besrc/main/java/org/bukkit/event/enchantment/PrepareItemEnchantEvent.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_219d00_ca71besrc/main/java/org/bukkit/event/entity/EntityChangeBlockEvent.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_219d00_ca71besrc/main/java/org/bukkit/event/entity/EntityCombustByBlockEvent.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_219d00_ca71besrc/main/java/org/bukkit/event/entity/EntityCombustByEntityEvent.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_219d00_ca71besrc/main/java/org/bukkit/event/entity/EntityDamageByBlockEvent.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_219d00_ca71besrc/main/java/org/bukkit/event/entity/EntityDamageByEntityEvent.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_219d00_ca71besrc/main/java/org/bukkit/event/entity/EntityDeathEvent.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_219d00_ca71besrc/main/java/org/bukkit/event/entity/EntityTameEvent.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_219d00_ca71besrc/main/java/org/bukkit/event/entity/EntityTargetEvent.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_219d00_ca71besrc/main/java/org/bukkit/event/entity/ItemSpawnEvent.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_219d00_ca71besrc/main/java/org/bukkit/event/entity/PigZapEvent.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_219d00_ca71besrc/main/java/org/bukkit/event/inventory/FurnaceSmeltEvent.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_219d00_ca71besrc/main/java/org/bukkit/event/painting/PaintingPlaceEvent.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_219d00_ca71besrc/main/java/org/bukkit/event/player/PlayerBedLeaveEvent.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_219d00_ca71besrc/main/java/org/bukkit/event/player/PlayerChatEvent.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_219d00_ca71besrc/main/java/org/bukkit/event/player/PlayerFishEvent.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_219d00_ca71besrc/main/java/org/bukkit/event/player/PlayerInteractEntityEvent.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_219d00_ca71besrc/main/java/org/bukkit/event/player/PlayerInteractEvent.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_219d00_ca71besrc/main/java/org/bukkit/event/player/PlayerMoveEvent.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_219d00_ca71besrc/main/java/org/bukkit/event/player/PlayerPortalEvent.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_219d00_ca71besrc/main/java/org/bukkit/event/player/PlayerPortalEvent.java:-1:-1:MF_CLASS_MASKS_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_219d00_ca71besrc/main/java/org/bukkit/event/player/PlayerRespawnEvent.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_219d00_ca71besrc/main/java/org/bukkit/event/vehicle/VehicleBlockCollisionEvent.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_219d00_ca71besrc/main/java/org/bukkit/event/vehicle/VehicleDestroyEvent.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_219d00_ca71besrc/main/java/org/bukkit/event/vehicle/VehicleEnterEvent.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_219d00_ca71besrc/main/java/org/bukkit/event/vehicle/VehicleEntityCollisionEvent.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_219d00_ca71besrc/main/java/org/bukkit/event/weather/LightningStrikeEvent.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_219d00_ca71besrc/main/java/org/bukkit/event/world/PortalCreateEvent.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_219d00_ca71besrc/main/java/org/bukkit/event/world/StructureGrowEvent.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_380b5c_0b03f7src/main/java/org/bukkit/event/player/PlayerBlockItemEvent.java:-1:-1:MF_CLASS_MASKS_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_5c8bc6_e35037src/main/java/org/bukkit/event/player/PlayerChatEvent.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Bukkit-Bukkit_5c8bc6_e35037src/main/java/org/bukkit/event/vehicle/VehicleEntityCollisionEvent.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:caprica-vlcj_28772f_ba633esrc/main/java/uk/co/caprica/vlcj/player/MediaPlayerEventAdapter.java:246:246:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:caprica-vlcj_292c85_d49055src/main/java/uk/co/caprica/vlcj/player/MediaPlayerEventAdapter.java:246:246:UC_USELESS_VOID_METHOD -#Illegal_Line_Position:caprica-vlcj_322287_1ed4efsrc/main/java/uk/co/caprica/vlcj/binding/internal/libvlc_title_description_t.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:Carboni-zebedee_5bb4a5_4a49efsrc/main/java/com/github/onsdigital/zebedee/Permissions.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:Carboni-zebedee_c4ab4d_0cac53src/main/java/com/github/onsdigital/zebedee/model/Collections.java:9:60:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:Carboni-zebedee_eab3c5_9df926src/main/java/com/github/onsdigital/zebedee/model/Collections.java:9:83:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:carrotsearch-randomizedtesting_f3e2ca_a37013ant-junit4/src/main/java/com/carrotsearch/ant/tasks/junit4/events/mirrors/SerializableMirror.java:14:47:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:Cas-B-Group17-BubbleBobble_0aaabc_8afdc5src/main/java/org/group17/bubblebobble/Game.java:57:57:UC_USELESS_VOID_METHOD -#Illegal_Line_Position:Cas-B-Group17-BubbleBobble_1d9be7_3811d5src/main/java/org/group17/bubblebobble/GUI.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:Cas-B-Group17-BubbleBobble_1d9be7_3811d5src/main/java/org/group17/bubblebobble/Main.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:Cas-B-Group17-BubbleBobble_3b682e_66a57csrc/main/java/org/group17/Gui/GUI.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:Cas-B-Group17-BubbleBobble_5de69a_26e8aasrc/main/java/org/group17/bubblebobble/GUI.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:Cas-B-Group17-BubbleBobble_5de69a_26e8aasrc/main/java/org/group17/bubblebobble/Main.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:Cas-B-Group17-BubbleBobble_706477_014038src/main/java/org/group17/bubblebobble/Game.java:36:36:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:Cas-B-Group17-BubbleBobble_9179cb_c7f330src/main/java/org/group17/bubblebobble/Game.java:36:36:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:Cas-B-Group17-BubbleBobble_9c6eb3_d307c4src/main/java/org/group17/bubblebobble/GUI.java:376:376:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:Cas-B-Group17-BubbleBobble_9c6eb3_d307c4src/main/java/org/group17/bubblebobble/GUI.java:351:394:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:Cas-B-Group17-BubbleBobble_9c6eb3_d307c4src/main/java/org/group17/bubblebobble/GUI.java:387:387:UC_USELESS_VOID_METHOD -#Illegal_Line_Position:Cas-B-Group17-BubbleBobble_aa7fec_f2b089src/main/java/org/group17/Gui/GUI.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:Cas-B-Group17-BubbleBobble_e1fec5_c04b35src/main/java/org/group17/bubblebobble/GUI.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:Cas-B-Group17-BubbleBobble_e1fec5_c04b35src/main/java/org/group17/bubblebobble/GUI.java:386:386:UC_USELESS_VOID_METHOD -#Illegal_Line_Position:Cas-B-Group17-BubbleBobble_e1fec5_c04b35src/main/java/org/group17/bubblebobble/Main.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:Cas-B-Group17-BubbleBobble_ee94f4_c2127fsrc/main/java/org/group17/bubblebobble/GUI.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:Cas-B-Group17-BubbleBobble_ee94f4_c2127fsrc/main/java/org/group17/bubblebobble/Main.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:Cas-B-Group17-BubbleBobble_fd478a_9bc3bbsrc/main/java/org/group17/bubblebobble/Game.java:51:51:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:cdi-spec-cdi-tck_08b25b_73b89cimpl/src/main/java/org/jboss/jsr299/tck/tests/event/observer/enterprise/IndirectStockWatcher.java:21:21:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:cdi-spec-cdi-tck_08b25b_73b89cimpl/src/main/java/org/jboss/jsr299/tck/tests/event/observer/enterprise/LazyFarmer.java:21:21:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:cdi-spec-cdi-tck_1f4449_5c4cecimpl/src/main/java/org/jboss/jsr299/tck/tests/context/passivating/broken/decoratorWithNonPassivatingBeanConstructor/UnderwaterCity.java:21:27:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:cdi-spec-cdi-tck_1f4449_5c4cecimpl/src/main/java/org/jboss/jsr299/tck/tests/context/passivating/broken/decoratorWithNonPassivatingInitializerMethod/UnderwaterCity.java:24:30:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:cdi-spec-cdi-tck_1f4449_5c4cecimpl/src/main/java/org/jboss/jsr299/tck/tests/context/passivating/broken/decoratorWithNonPassivatingInjectedField/UnderwaterCity.java:21:27:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:cdi-spec-cdi-tck_663aa2_3089a2impl/src/main/java/org/jboss/jsr299/tck/tests/event/resolve/binding/BindingTypeABinding.java:21:21:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:cdi-spec-cdi-tck_663aa2_3089a2impl/src/main/java/org/jboss/jsr299/tck/tests/extensions/bean/bytype/TameLiteral.java:21:21:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:cdi-spec-cdi-tck_663aa2_3089a2impl/src/main/java/org/jboss/jsr299/tck/tests/interceptors/definition/InterceptorDefinitionTest.java:177:177:SIC_INNER_SHOULD_BE_STATIC_ANON -#Null_Violation_Hunk:cdi-spec-cdi-tck_663aa2_3089a2impl/src/main/java/org/jboss/jsr299/tck/tests/interceptors/definition/InterceptorDefinitionTest.java:305:305:SIC_INNER_SHOULD_BE_STATIC_ANON -#Null_Violation_Hunk:cdi-spec-cdi-tck_663aa2_3089a2impl/src/main/java/org/jboss/jsr299/tck/tests/interceptors/definition/InterceptorDefinitionTest.java:152:152:SIC_INNER_SHOULD_BE_STATIC_ANON -#Null_Violation_Hunk:cdi-spec-cdi-tck_83a7e7_07365fimpl/src/main/java/org/jboss/cdi/tck/tests/definition/qualifier/TameLiteral.java:21:21:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:cdi-spec-cdi-tck_a08b80_fe2cf9impl/src/main/java/org/jboss/jsr299/tck/tests/context/passivating/broken/enterpriseBeanWithNonPassivatingConstructorFieldInDecorator/BrokenDecorator.java:31:31:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:cdi-spec-cdi-tck_a08b80_fe2cf9impl/src/main/java/org/jboss/jsr299/tck/tests/context/passivating/broken/enterpriseBeanWithNonPassivatingInjectedFieldInDecorator/BrokenDecorator.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:cdi-spec-cdi-tck_a08b80_fe2cf9impl/src/main/java/org/jboss/jsr299/tck/tests/context/passivating/broken/enterpriseBeanWithNonPassivatingInjectedFieldInDecorator/BrokenDecorator.java:26:26:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:chapmajs-shiro_087bbe_539f76src/org/jsecurity/authc/SimpleAccount.java:-1:-1:SE_TRANSIENT_FIELD_NOT_RESTORED -#Illegal_Line_Position:chapmajs-shiro_087bbe_539f76src/org/jsecurity/web/tags/PrincipalTag.java:-1:-1:MF_CLASS_MASKS_FIELD -#Illegal_Line_Position:chapmajs-shiro_087bbe_539f76src/org/jsecurity/web/tags/PrincipalTag.java:-1:-1:SE_TRANSIENT_FIELD_NOT_RESTORED -#Illegal_Line_Position:chapmajs-shiro_667ebd_a8c4a4src/org/jsecurity/web/attr/AbstractWebAttribute.java:-1:-1:MF_CLASS_MASKS_FIELD -#Illegal_Line_Position:charite-jannovar_39e5cb_77a4f3src/main/java/jannovar/reference/Chromosome.java:-1:-1:UWF_NULL_FIELD -#Null_Violation_Hunk:charite-jannovar_c2fc03_53ea99src/main/java/jannovar/impl/interval/Node.java:48:48:URF_UNREAD_FIELD -#Null_Violation_Hunk:charite-jannovar_c2fc03_53ea99src/main/java/jannovar/impl/interval/Node.java:42:42:URF_UNREAD_FIELD -#Null_Violation_Hunk:checkstyle-checkstyle_9470bb_12fc9asrc/test/resources/com/puppycrawl/tools/checkstyle/coding/InputVariableDeclarationUsageDistanceCheck.java:817:822:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:checkstyle-checkstyle_b6aabf_febbc9src/it/resources/com/google/checkstyle/test/chapter4formatting/rule4822variabledistance/InputVariableDeclarationUsageDistanceCheck.java:780:785:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:checkstyle-checkstyle_e7547b_d220d7src/test/resources/com/puppycrawl/tools/checkstyle/javadoc/InputTestNumberFormatException.java:4:4:NM_CLASS_NOT_EXCEPTION -#Illegal_Line_Position:ChiralBehaviors-Ultrastructure_0fc0fb_9e52b8swing-ui/src/main/java/com/chiralbehaviors/CoRE/workspace/swing/ExistentialRuleformPane.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:ChiralBehaviors-Ultrastructure_0fc0fb_9e52b8swing-ui/src/main/java/com/chiralbehaviors/CoRE/workspace/swing/JobPane.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:ChiralBehaviors-Ultrastructure_0fc0fb_9e52b8swing-ui/src/main/java/com/chiralbehaviors/CoRE/workspace/swing/MetaProtocolPane.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:ChiralBehaviors-Ultrastructure_0fc0fb_9e52b8swing-ui/src/main/java/com/chiralbehaviors/CoRE/workspace/swing/ProtocolPane.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:ChiralBehaviors-Ultrastructure_0fc0fb_9e52b8swing-ui/src/main/java/com/chiralbehaviors/CoRE/workspace/swing/RelationshipPane.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:ChiralBehaviors-Ultrastructure_0fc0fb_9e52b8swing-ui/src/main/java/com/chiralbehaviors/CoRE/workspace/swing/SequencingPane.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:ChiralBehaviors-Ultrastructure_0fc0fb_9e52b8swing-ui/src/main/java/com/chiralbehaviors/CoRE/workspace/swing/WorkspaceBackedView.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:ChiralBehaviors-Ultrastructure_2c7537_5b5546swing-ui/src/main/java/com/chiralbehaviors/CoRE/workspace/swing/ExistentialRuleformPane.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:ChiralBehaviors-Ultrastructure_2c7537_5b5546swing-ui/src/main/java/com/chiralbehaviors/CoRE/workspace/swing/JobPane.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:ChiralBehaviors-Ultrastructure_2c7537_5b5546swing-ui/src/main/java/com/chiralbehaviors/CoRE/workspace/swing/MetaProtocolPane.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:ChiralBehaviors-Ultrastructure_2c7537_5b5546swing-ui/src/main/java/com/chiralbehaviors/CoRE/workspace/swing/ProtocolPane.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:ChiralBehaviors-Ultrastructure_2c7537_5b5546swing-ui/src/main/java/com/chiralbehaviors/CoRE/workspace/swing/RelationshipPane.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:ChiralBehaviors-Ultrastructure_2c7537_5b5546swing-ui/src/main/java/com/chiralbehaviors/CoRE/workspace/swing/SequencingPane.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:ChiralBehaviors-Ultrastructure_2c7537_5b5546swing-ui/src/main/java/com/chiralbehaviors/CoRE/workspace/swing/WorkspaceBackedView.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:chocoteam-choco3_245dc3_d92c1fchoco-solver/src/main/java/solver/constraints/nary/alldifferent/PropAllDiffBC.java:468:468:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:chocoteam-choco3_245dc3_d92c1fchoco-solver/src/main/java/solver/constraints/nary/automata/structure/regular/StoredDirectedMultiGraph.java:62:62:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:chocoteam-choco3_245dc3_d92c1fchoco-solver/src/main/java/solver/constraints/nary/automata/structure/regular/StoredDirectedMultiGraph.java:70:70:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:chocoteam-choco3_5bbaf9_4a3415choco-solver/src/main/java/org/chocosolver/solver/constraints/nary/cnf/LogicTreeToolBox.java:246:255:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Illegal_Line_Position:cismet-cismet-gui-commons_03b9eb_7c65a1src/main/java/de/cismet/security/handler/HTTPBasedAccessHandler.java:-1:-1:DMI_COLLECTION_OF_URLS -#Illegal_Line_Position:cjdev-versions-maven-plugin_05818d_53f370src/main/java/org/codehaus/mojo/versions/LockSnapshotsMojo.java:-1:-1:UWF_NULL_FIELD -#Illegal_Line_Position:cjdev-versions-maven-plugin_05818d_53f370src/main/java/org/codehaus/mojo/versions/ResolveRangesMojo.java:-1:-1:UWF_NULL_FIELD -#Illegal_Line_Position:cjdev-versions-maven-plugin_05818d_53f370src/main/java/org/codehaus/mojo/versions/UnlockSnapshotsMojo.java:-1:-1:UWF_NULL_FIELD -#Illegal_Line_Position:cjdev-versions-maven-plugin_05818d_53f370src/main/java/org/codehaus/mojo/versions/UseReleasesMojo.java:-1:-1:UWF_NULL_FIELD -#Null_Violation_Hunk:cjdev-versions-maven-plugin_55dc5a_96b262src/main/java/org/codehaus/mojo/versions/DisplayDependencyUpdatesMojo.java:161:197:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Illegal_Line_Position:cjdev-versions-maven-plugin_5f8c44_04af5dsrc/main/java/org/codehaus/mojo/versions/UpdateChildModulesMojo.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:cjdev-versions-maven-plugin_876b64_e596f1src/main/java/org/codehaus/mojo/versions/AbstractVersionsUpdaterMojo.java:448:552:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:cjdev-versions-maven-plugin_876b64_e596f1src/main/java/org/codehaus/mojo/versions/AbstractVersionsUpdaterMojo.java:562:571:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:cjdev-versions-maven-plugin_876b64_e596f1src/main/java/org/codehaus/mojo/versions/AbstractVersionsUpdaterMojo.java:581:590:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Illegal_Line_Position:cjdev-versions-maven-plugin_a67ece_51ee9bsrc/main/java/org/codehaus/mojo/versions/UpdateChildModulesMojo.java:-1:-1:UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:cjdev-versions-maven-plugin_da1db8_b08982src/main/java/org/codehaus/mojo/versions/DisplayPluginUpdatesMojo.java:1374:1407:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Illegal_Line_Position:cjdev-versions-maven-plugin_e60b49_5c6476src/main/java/org/codehaus/mojo/versions/CompareDependenciesMojo.java:-1:-1:UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_06a731_c2709bsrc/main/java/edu/clemson/cs/r2jt/typeandpopulate/Populator.java:2704:2717:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_0d5705_40468bsrc/main/java/edu/clemson/cs/r2jt/translation/PrettyCTranslationInfo.java:110:110:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_115357_d1623dsrc/main/java/edu/clemson/cs/r2jt/translation/PrettyJavaTranslationInfo.java:108:108:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_11815c_f29377src/main/java/edu/clemson/cs/r2jt/congruenceclassprover/InstantiatedTheoremPrioritizer.java:48:97:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_19f744_a8b76csrc/main/java/edu/clemson/cs/r2jt/proving2/AlgebraicProver.java:513:517:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_19f744_a8b76csrc/main/java/edu/clemson/cs/r2jt/proving2/AutomatedProver.java:463:491:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_1b3745_8decd1src/main/java/edu/clemson/cs/r2jt/population/Populator.java:1583:1596:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_1c12dd_37e24csrc/main/java/edu/clemson/cs/r2jt/proving/absyn/PExp.java:534:534:HE_HASHCODE_USE_OBJECT_EQUALS -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_2145b3_329519src/main/java/edu/clemson/cs/r2jt/typeandpopulate2/PopulatingVisitor.java:1180:1180:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_2145b3_329519src/main/java/edu/clemson/cs/r2jt/typeandpopulate2/PopulatingVisitor.java:1290:1301:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_35d9f9_56ce4bsrc/main/java/edu/clemson/cs/r2jt/translation/PrettyCTranslationInfo.java:110:110:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_40b735_5270f8src/main/java/edu/clemson/cs/r2jt/proving/absyn/PExp.java:534:534:HE_HASHCODE_USE_OBJECT_EQUALS -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_460138_792ecfsrc/main/java/edu/clemson/cs/r2jt/proving2/model/PerVCProverModel.java:1062:1073:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_4c94b0_0a304dsrc/main/java/edu/clemson/cs/r2jt/archiving/Archiver.java:546:551:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_4c94b0_0a304dsrc/main/java/edu/clemson/cs/r2jt/archiving/Archiver.java:524:524:EI_EXPOSE_REP -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_4c94b0_0a304dsrc/main/java/edu/clemson/cs/r2jt/archiving/Archiver.java:325:325:REC_CATCH_EXCEPTION -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_535e0a_c14ab7src/main/java/edu/clemson/cs/r2jt/typereasoning/TypeGraph.java:1087:1091:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_546b3f_c91dbesrc/main/java/edu/clemson/cs/r2jt/congruenceclassprover/SMTProver.java:302:302:SBSC_USE_STRINGBUFFER_CONCATENATION -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_5c21e8_6157bcsrc/main/java/edu/clemson/cs/r2jt/vcgeneration/VCGenerator.java:1883:1883:RCN_REDUNDANT_NULLCHECK_OF_NONNULL_VALUE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_5c21e8_6157bcsrc/main/java/edu/clemson/cs/r2jt/vcgeneration/VCGenerator.java:2903:2903:NP_NULL_ON_SOME_PATH -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_5c8848_955d44src/main/java/edu/clemson/cs/r2jt/typeandpopulate2/PopulatingVisitor.java:1219:1230:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_622cf6_7f72a5src/main/java/edu/clemson/cs/r2jt/typeandpopulate2/PopulatingVisitor.java:1708:1719:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_622cf6_7f72a5src/main/java/edu/clemson/cs/r2jt/typeandpopulate2/PopulatingVisitor.java:1598:1598:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_62e445_6a59d3src/main/java/edu/clemson/cs/r2jt/congruenceclassprover/NormalizedAtomicExpressionMapImpl.java:172:172:DLS_DEAD_LOCAL_STORE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_64c586_d41ac9src/main/java/edu/clemson/cs/r2jt/congruenceclassprover/CongruenceClassProver.java:499:499:DM_DEFAULT_ENCODING -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_64c586_d41ac9src/main/java/edu/clemson/cs/r2jt/congruenceclassprover/CongruenceClassProver.java:499:499:OS_OPEN_STREAM_EXCEPTION_PATH -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_64c586_d41ac9src/main/java/edu/clemson/cs/r2jt/congruenceclassprover/CongruenceClassProver.java:499:499:OBL_UNSATISFIED_OBLIGATION_EXCEPTION_EDGE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_678acc_b7a8fesrc/main/java/edu/clemson/cs/r2jt/vcgeneration/VCGenerator.java:3168:3168:DLS_DEAD_LOCAL_STORE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_6a59d3_f2823esrc/main/java/edu/clemson/cs/r2jt/congruenceclassprover/NormalizedAtomicExpressionMapImpl.java:178:178:DLS_DEAD_LOCAL_STORE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_6a59d3_f2823esrc/main/java/edu/clemson/cs/r2jt/congruenceclassprover/Registry.java:62:62:WMI_WRONG_MAP_ITERATOR -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_6a59d3_f2823esrc/main/java/edu/clemson/cs/r2jt/init/Controller.java:1819:1819:DE_MIGHT_IGNORE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_6a59d3_f2823esrc/main/java/edu/clemson/cs/r2jt/init/Controller.java:1859:1859:DE_MIGHT_IGNORE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_6a59d3_f2823esrc/main/java/edu/clemson/cs/r2jt/init/Controller.java:1758:1758:REC_CATCH_EXCEPTION -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_6ac4c9_da9566src/main/java/edu/clemson/cs/r2jt/congruenceclassprover/TheoremCongruenceClosureImpl.java:38:38:URF_UNREAD_FIELD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_6adf7f_573169src/main/java/edu/clemson/cs/r2jt/congruenceclassprover/CongruenceClassProver.java:400:400:DM_DEFAULT_ENCODING -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_7029e2_622cf6src/main/java/edu/clemson/cs/r2jt/typeandpopulate2/PopulatingVisitor.java:1572:1583:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_7564a0_d671d7src/main/java/edu/clemson/cs/r2jt/vcgeneration/VCGenerator.java:806:806:RCN_REDUNDANT_NULLCHECK_OF_NONNULL_VALUE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_765a7d_b84720src/main/java/edu/clemson/cs/r2jt/proving2/JProverStateDisplay.java:217:280:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_792ecf_aa4f78src/main/java/edu/clemson/cs/r2jt/proving2/model/PerVCProverModel.java:1058:1069:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_7f2c5f_d40c02src/main/java/edu/clemson/cs/r2jt/proving2/proofsteps/StrengthenConsequentStep.java:57:61:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_84220c_70e2basrc/main/java/edu/clemson/cs/r2jt/congruenceclassprover/ConjunctionOfNormalizedAtomicExpressions.java:549:549:WMI_WRONG_MAP_ITERATOR -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_84220c_70e2basrc/main/java/edu/clemson/cs/r2jt/congruenceclassprover/NormalizedAtomicExpressionMapImpl.java:225:225:HE_HASHCODE_USE_OBJECT_EQUALS -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_86f012_cdeb70src/main/java/edu/clemson/cs/r2jt/proving2/transformations/ExpandAntecedentByImplication.java:165:215:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_997a8d_6a1c83src/main/java/edu/clemson/cs/r2jt/population/Populator.java:1583:1596:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9c34c9_2ae73dsrc/main/java/edu/clemson/cs/r2jt/population/Populator.java:2146:2159:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/absyn/AssumeStmt.java:129:129:CN_IDIOM_NO_SUPER_CALL -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/absyn/BetweenExp.java:114:127:CN_IDIOM_NO_SUPER_CALL -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/absyn/CharExp.java:91:91:DM_NUMBER_CTOR -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/absyn/ConfirmStmt.java:125:125:CN_IDIOM_NO_SUPER_CALL -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/absyn/Dec.java:43:43:DM_STRING_VOID_CTOR -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/absyn/DoubleExp.java:134:134:FE_FLOATING_POINT_EQUALITY -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/absyn/EqualsExp.java:330:335:SF_SWITCH_NO_DEFAULT -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/absyn/Exp.java:401:401:NP_NULL_ON_SOME_PATH_MIGHT_BE_INFEASIBLE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/absyn/Exp.java:422:422:NP_NULL_ON_SOME_PATH_MIGHT_BE_INFEASIBLE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/absyn/FunctionArgList.java:100:109:CN_IMPLEMENTS_CLONE_BUT_NOT_CLONEABLE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/absyn/FunctionExp.java:213:213:NM_VERY_CONFUSING -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/absyn/IfExp.java:261:269:SF_SWITCH_NO_DEFAULT -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/absyn/InitItem.java:119:119:UWF_UNWRITTEN_FIELD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/absyn/InitItem.java:75:75:SA_FIELD_DOUBLE_ASSIGNMENT -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/absyn/MathVarDec.java:129:129:DM_STRING_VOID_CTOR -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/absyn/ParameterVarDec.java:133:137:CN_IDIOM_NO_SUPER_CALL -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/absyn/PrefixExp.java:177:177:DM_STRING_TOSTRING -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/absyn/ProgramFunctionExp.java:177:177:DM_STRING_TOSTRING -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/absyn/ProgramParamExp.java:183:183:DM_STRING_TOSTRING -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/absyn/QuantExp.java:266:282:CN_IDIOM_NO_SUPER_CALL -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/absyn/ResolveConceptualElement.java:90:90:DP_DO_INSIDE_DO_PRIVILEGED -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/absyn/Statement.java:39:39:DM_STRING_VOID_CTOR -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/absyn/VarDec.java:113:116:CN_IDIOM_NO_SUPER_CALL -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/absyn/VarExp.java:314:324:CN_IDIOM_NO_SUPER_CALL -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/absyn/VariableDotExp.java:197:197:BC_UNCONFIRMED_CAST -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/analysis/Analyzer.java:1394:1394:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/analysis/Analyzer.java:1420:1420:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/analysis/Analyzer.java:1374:1374:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/analysis/Analyzer.java:1446:1446:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/analysis/Analyzer.java:1352:1352:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/analysis/Analyzer.java:997:1005:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/analysis/Analyzer.java:1201:1201:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/analysis/Analyzer.java:1363:1363:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/analysis/Analyzer.java:1291:1291:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/analysis/Analyzer.java:1533:1539:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/analysis/Analyzer.java:1384:1384:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/analysis/Analyzer.java:1404:1404:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/analysis/Analyzer.java:1432:1432:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/analysis/Analyzer.java:1442:1442:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/analysis/Analyzer.java:1333:1333:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/analysis/Analyzer.java:1218:1218:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/analysis/Analyzer.java:1223:1223:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/analysis/Analyzer.java:1558:1566:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/analysis/Analyzer.java:1322:1322:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/analysis/Analyzer.java:1480:1480:SBSC_USE_STRINGBUFFER_CONCATENATION -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/analysis/Analyzer.java:1138:1138:UCF_USELESS_CONTROL_FLOW -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/analysis/Analyzer.java:983:991:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/analysis/Analyzer.java:1184:1184:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/analysis/Analyzer.java:1582:1590:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/archiving/Archiver.java:105:105:MS_SHOULD_BE_FINAL -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/data/Location.java:89:89:OS_OPEN_STREAM -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/data/Location.java:88:88:DM_DEFAULT_ENCODING -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/data/Location.java:145:147:CN_IMPLEMENTS_CLONE_BUT_NOT_CLONEABLE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/data/Pos.java:68:68:EQ_SELF_USE_OBJECT -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/data/Pos.java:68:68:HE_EQUALS_USE_HASHCODE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/data/Symbol.java:59:59:HE_EQUALS_USE_HASHCODE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/data/Symbol.java:59:59:EQ_SELF_USE_OBJECT -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/data/Symbol.java:92:92:EQ_COMPARETO_USE_OBJECT_EQUALS -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/entry/TypeEntry.java:52:52:URF_UNREAD_FIELD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/errors/ErrorHandler.java:58:58:DM_DEFAULT_ENCODING -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/errors/ErrorHandler.java:320:320:BC_IMPOSSIBLE_CAST -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/errors/ErrorHandler.java:66:66:DM_STRING_CTOR -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/init/Controller.java:1731:1731:DM_DEFAULT_ENCODING -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/init/Controller.java:1732:1732:OS_OPEN_STREAM_EXCEPTION_PATH -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/init/Controller.java:1854:1854:DE_MIGHT_IGNORE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/init/FileLocator.java:110:110:NP_NULL_ON_SOME_PATH_FROM_RETURN_VALUE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/location/DefinitionLocator.java:54:54:URF_UNREAD_FIELD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/location/ProofLocator.java:59:59:URF_UNREAD_FIELD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/location/TheoremLocator.java:59:59:URF_UNREAD_FIELD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/parsing/ColsToken.java:54:54:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/population/OldPopulator.java:1732:1735:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/population/OldPopulator.java:1360:1361:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/population/OldPopulator.java:1750:1750:SIO_SUPERFLUOUS_INSTANCEOF -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/population/OldPopulator.java:1750:1750:BC_VACUOUS_INSTANCEOF -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/population/OldPopulator.java:1023:1023:RCN_REDUNDANT_NULLCHECK_WOULD_HAVE_BEEN_A_NPE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/proving2/model/PerVCProverModel.java:1098:1107:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/proving2/proofsteps/LabelStep.java:36:36:URF_UNREAD_FIELD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/proving2/proofsteps/StrengthenConsequentStep.java:96:96:EQ_COMPARETO_USE_OBJECT_EQUALS -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/proving2/utilities/InductiveSiteIterator.java:104:134:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/scope/Binding.java:212:212:RCN_REDUNDANT_NULLCHECK_OF_NONNULL_VALUE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/scope/OldSymbolTable.java:836:836:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/scope/OldSymbolTable.java:768:769:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/scope/ScopeID.java:68:68:UCF_USELESS_CONTROL_FLOW -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/translation/PrettyCTranslation.java:69:69:URF_UNREAD_FIELD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/translation/PrettyCTranslation.java:70:70:URF_UNREAD_FIELD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/translation/PrettyCTranslation.java:73:73:URF_UNREAD_FIELD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/translation/PrettyJavaTranslation.java:67:67:URF_UNREAD_FIELD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/translation/PrettyJavaTranslation.java:68:68:URF_UNREAD_FIELD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/translation/PrettyJavaTranslator.java:1858:1858:UCF_USELESS_CONTROL_FLOW -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/translation/PrettyJavaTranslator.java:4022:4022:RV_RETURN_VALUE_IGNORED_BAD_PRACTICE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/translation/PrettyJavaTranslator.java:2451:2451:UCF_USELESS_CONTROL_FLOW -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/translation/PrettyJavaTranslator.java:4108:4108:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/translation/PrettyJavaTranslator.java:3723:3733:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/translation/PrettyJavaTranslator.java:2059:2059:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/translation/PrettyJavaTranslator.java:4101:4104:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/translation/Translator.java:2286:2286:SIO_SUPERFLUOUS_INSTANCEOF -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/translation/Translator.java:4238:4241:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/translation/Translator.java:990:990:DLS_DEAD_LOCAL_STORE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/translation/Translator.java:3957:3957:DM_DEFAULT_ENCODING -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/translation/Translator.java:3955:3955:RV_RETURN_VALUE_IGNORED_BAD_PRACTICE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/translation/Translator.java:2286:2286:BC_VACUOUS_INSTANCEOF -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/type/VoidType.java:67:67:DM_STRING_CTOR -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/type/VoidType.java:63:63:DM_STRING_CTOR -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/typeandpopulate/MTPowertypeApplication.java:68:68:BC_UNCONFIRMED_CAST -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/verification/PrintAssertions.java:57:57:URF_UNREAD_FIELD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/verification/PrintAssertions.java:321:321:UC_USELESS_CONDITION -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/verification/PrintAssertions.java:1118:1127:DB_DUPLICATE_BRANCHES -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/verification/Verifier.java:331:331:RCN_REDUNDANT_NULLCHECK_OF_NONNULL_VALUE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/verification/Verifier.java:4701:4701:DB_DUPLICATE_BRANCHES -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/verification/Verifier.java:6306:6306:UCF_USELESS_CONTROL_FLOW -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_9ee405_202d6dsrc/main/java/edu/clemson/cs/r2jt/verification/Verifier.java:3808:3811:UPM_UNCALLED_PRIVATE_METHOD 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-#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_c15b01_cd708asrc/main/java/edu/clemson/cs/r2jt/congruenceclassprover/CongruenceClassProver.java:47:47:SS_SHOULD_BE_STATIC -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_c15b01_cd708asrc/main/java/edu/clemson/cs/r2jt/init/Controller.java:1813:1847:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_c15b01_cd708asrc/main/java/edu/clemson/cs/r2jt/init/Controller.java:1742:1742:REC_CATCH_EXCEPTION -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_c3f27c_d06bf9src/main/java/edu/clemson/cs/r2jt/congruenceclassprover/InstantiatedTheoremPrioritizer.java:49:98:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_c6ddb8_267016src/main/java/edu/clemson/cs/r2jt/population/Populator.java:1587:1600:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_c6ecec_77ee2dsrc/main/java/edu/clemson/cs/r2jt/population/Populator.java:2142:2155:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_cd708a_b8f789src/main/java/edu/clemson/cs/r2jt/congruenceclassprover/CongruenceClassProver.java:196:196:OBL_UNSATISFIED_OBLIGATION_EXCEPTION_EDGE -#Illegal_Line_Position:ClemsonRSRG-RESOLVE_cdeb70_e13e1asrc/main/java/edu/clemson/cs/r2jt/ResolveCompiler.java:-1:-1:MS_CANNOT_BE_FINAL -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_ce7244_2145b3src/main/java/edu/clemson/cs/r2jt/typeandpopulate2/PopulatingVisitor.java:1267:1278:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Illegal_Line_Position:ClemsonRSRG-RESOLVE_d40c02_a996acsrc/main/java/edu/clemson/cs/r2jt/ResolveCompiler.java:-1:-1:MS_CANNOT_BE_FINAL -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_d41ac9_a7cb0bsrc/main/java/edu/clemson/cs/r2jt/congruenceclassprover/ConjunctionOfNormalizedAtomicExpressions.java:820:820:WMI_WRONG_MAP_ITERATOR -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_da9566_62e445src/main/java/edu/clemson/cs/r2jt/congruenceclassprover/CongruenceClassProver.java:83:83:DLS_DEAD_LOCAL_STORE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_da9566_62e445src/main/java/edu/clemson/cs/r2jt/congruenceclassprover/ConjunctionOfNormalizedAtomicExpressions.java:115:115:SBSC_USE_STRINGBUFFER_CONCATENATION -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_da9566_62e445src/main/java/edu/clemson/cs/r2jt/congruenceclassprover/ConjunctionOfNormalizedAtomicExpressions.java:111:121:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_da9566_62e445src/main/java/edu/clemson/cs/r2jt/congruenceclassprover/SearchBox.java:34:34:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_da9566_62e445src/main/java/edu/clemson/cs/r2jt/congruenceclassprover/TheoremCongruenceClosureImpl.java:122:122:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_da9566_62e445src/main/java/edu/clemson/cs/r2jt/congruenceclassprover/TheoremCongruenceClosureImpl.java:53:53:DLS_DEAD_LOCAL_STORE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_da9566_62e445src/main/java/edu/clemson/cs/r2jt/congruenceclassprover/TheoremCongruenceClosureImpl.java:82:82:DLS_DEAD_LOCAL_STORE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_ddd63b_460138src/main/java/edu/clemson/cs/r2jt/proving2/proofsteps/StrengthenConsequentStep.java:85:89:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_e3b92d_e2c02asrc/main/java/edu/clemson/cs/r2jt/typeandpopulate2/PopulatingVisitor.java:975:986:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_f2823e_c15b01src/main/java/edu/clemson/cs/r2jt/congruenceclassprover/NormalizedAtomicExpressionMapImpl.java:179:179:DLS_DEAD_LOCAL_STORE -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_f2823e_c15b01src/main/java/edu/clemson/cs/r2jt/congruenceclassprover/NormalizedAtomicExpressionMapImpl.java:232:232:SBSC_USE_STRINGBUFFER_CONCATENATION -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_f2823e_c15b01src/main/java/edu/clemson/cs/r2jt/congruenceclassprover/NormalizedAtomicExpressionMapImpl.java:174:174:WMI_WRONG_MAP_ITERATOR -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_f2823e_c15b01src/main/java/edu/clemson/cs/r2jt/congruenceclassprover/TheoremCongruenceClosureImpl.java:124:124:WMI_WRONG_MAP_ITERATOR -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_f2823e_c15b01src/main/java/edu/clemson/cs/r2jt/congruenceclassprover/TheoremCongruenceClosureImpl.java:114:114:SBSC_USE_STRINGBUFFER_CONCATENATION -#Null_Violation_Hunk:ClemsonRSRG-RESOLVE_f5361a_c3f27csrc/main/java/edu/clemson/cs/r2jt/population/Populator.java:2718:2731:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Illegal_Line_Position:clojure-clojure_1d5237_bd6e90src/jvm/clojure/lang/ASeq.java:-1:-1:SE_TRANSIENT_FIELD_NOT_RESTORED -#Null_Violation_Hunk:clojure-clojure_494ab1_838302src/jvm/clojure/lang/Tuple.java:118:143:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:clojure-clojure_494ab1_838302src/jvm/clojure/lang/Tuple.java:437:501:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:clojure-clojure_494ab1_838302src/jvm/clojure/lang/Tuple.java:192:258:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:clojure-clojure_494ab1_838302src/jvm/clojure/lang/Tuple.java:262:311:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:clojure-clojure_494ab1_838302src/jvm/clojure/lang/Tuple.java:374:433:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:clojure-clojure_494ab1_838302src/jvm/clojure/lang/Tuple.java:315:369:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:clojure-clojure_494ab1_838302src/jvm/clojure/lang/Tuple.java:148:187:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:clojure-clojure_bfe14a_ae7acfsrc/jvm/clojure/lang/MapEntry.java:19:37:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:clojure-clojure_ed7419_b8607dsrc/jvm/clojure/lang/Tuple.java:266:299:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:cloudera-cdk_531a3a_95fb35src/main/java/com/cloudera/data/hdfs/HDFSDataset.java:14:14:URF_UNREAD_FIELD -#Null_Violation_Hunk:cloudera-cdk_b9e00a_97027csrc/main/java/com/cloudera/data/hdfs/HDFSDataset.java:14:14:URF_UNREAD_FIELD -#Null_Violation_Hunk:cloudera-cdk_e16e06_c53778src/main/java/com/cloudera/data/hdfs/HDFSDataset.java:13:13:URF_UNREAD_FIELD -#Null_Violation_Hunk:cloudera-cdk_ff00ea_81d4a8src/main/java/com/cloudera/data/hdfs/HDFSDataset.java:14:14:URF_UNREAD_FIELD -#Null_Violation_Hunk:cojen-Tupl_03e83e_271729src/main/java/org/cojen/tupl/Node.java:3093:3093:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:cojen-Tupl_29df95_605ba8src/main/java/org/cojen/tupl/FragmentCache.java:138:494:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:cojen-Tupl_4f8449_e4bf69src/main/java/org/cojen/tupl/BufferPool.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:cojen-Tupl_4f8449_e4bf69src/main/java/org/cojen/tupl/DirectPageCache.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:cojen-Tupl_4f8449_e4bf69src/main/java/org/cojen/tupl/Node.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:cojen-Tupl_682d54_4f8449src/main/java/org/cojen/tupl/FragmentCache.java:138:494:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:cojen-Tupl_746892_9c3f03src/main/java/org/cojen/tupl/BufferPool.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:cojen-Tupl_746892_9c3f03src/main/java/org/cojen/tupl/LockManager.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:cojen-Tupl_746892_9c3f03src/main/java/org/cojen/tupl/Node.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:cojen-Tupl_8ac1ee_67da42src/main/java/org/cojen/tupl/PageQueue.java:416:423:SIC_INNER_SHOULD_BE_STATIC_ANON -#Null_Violation_Hunk:cojen-Tupl_a201e9_1940ddsrc/main/java/org/cojen/tupl/PageQueue.java:410:417:SIC_INNER_SHOULD_BE_STATIC_ANON -#Null_Violation_Hunk:cojen-Tupl_ef756b_b06f57src/main/java/org/cojen/tupl/PageQueue.java:410:417:SIC_INNER_SHOULD_BE_STATIC_ANON -#Null_Violation_Hunk:ColoradoSchoolOfMines-interface_sdk_3ad13a_e6eb70src/main/java/edu/mines/acmX/exhibit/module_management/ModuleManager.java:272:274:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ColoradoSchoolOfMines-interface_sdk_697179_338283src/main/java/edu/mines/acmX/exhibit/module_management/ModuleManager.java:272:274:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ColoradoSchoolOfMines-interface_sdk_6c7aee_ebaa0dsrc/main/java/edu/mines/acmX/exhibit/input_services/hardware/drivers/KinectOpenNIDriver.java:120:126:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ColoradoSchoolOfMines-interface_sdk_6c7aee_ebaa0dsrc/main/java/edu/mines/acmX/exhibit/input_services/hardware/drivers/KinectOpenNIDriver.java:97:107:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ColoradoSchoolOfMines-interface_sdk_6c7aee_ebaa0dsrc/main/java/edu/mines/acmX/exhibit/input_services/hardware/drivers/KinectOpenNIDriver.java:110:116:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ColoradoSchoolOfMines-interface_sdk_6c7aee_ebaa0dsrc/main/java/edu/mines/acmX/exhibit/input_services/hardware/drivers/KinectOpenNIDriver.java:129:135:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ColoradoSchoolOfMines-interface_sdk_747a1d_feb35csrc/main/java/edu/mines/acmX/exhibit/stdlib/scoring/ScoreSaver.java:194:197:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ColoradoSchoolOfMines-interface_sdk_988fc7_37ce7esrc/main/java/edu/mines/acmX/exhibit/module_management/ModuleManager.java:295:297:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:ColoradoSchoolOfMines-interface_sdk_ac22b3_85056fsrc/main/java/edu/mines/acmX/exhibit/stdlib/scoring/ScoreSaver.java:-1:-1:UWF_NULL_FIELD -#Null_Violation_Hunk:ColoradoSchoolOfMines-interface_sdk_ad0c00_a6d5f6src/main/java/edu/mines/acmX/exhibit/stdlib/scoring/ScoreSaver.java:208:211:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:ColoradoSchoolOfMines-interface_sdk_adc45d_85365dsrc/main/java/edu/mines/acmX/exhibit/module_manager/AWTModule.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:ColoradoSchoolOfMines-interface_sdk_b90487_66d817src/main/java/edu/mines/acmX/exhibit/stdlib/scoring/ScoreSaver.java:-1:-1:UWF_NULL_FIELD -#Null_Violation_Hunk:ColoradoSchoolOfMines-interface_sdk_b90487_ac22b3src/main/java/edu/mines/acmX/exhibit/stdlib/scoring/ScoreSaverPanel.java:137:137:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:ColoradoSchoolOfMines-interface_sdk_c61769_496f26src/main/java/edu/mines/acmX/exhibit/module_management/ModuleManager.java:216:218:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ColoradoSchoolOfMines-interface_sdk_d3438e_f3545asrc/main/java/edu/mines/acmX/exhibit/module_management/ModuleManager.java:272:274:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:contextproject-discover_4af3b2_8196deapp/models/database/Processor/FeatureProcessor.java:-1:-1:UUF_UNUSED_FIELD 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-#Null_Violation_Hunk:digipost-digipost-api-client-java_939e59_8e8474src/main/java/no/digipost/api/client/representations/Invoice.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:DigitalPebble-storm-crawler_6e2f62_e3b66asrc/main/java/com/digitalpebble/storm/crawler/parse/filter/XPathFilter.java:57:65:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:DigitalPebble-storm-crawler_9d25b5_8d23b0src/main/java/com/digitalpebble/storm/crawler/parse/filter/XPathFilter.java:79:143:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:diirt-graphene_520955_c10e59graphene-profile/src/main/java/org/epics/graphene/profile/VisualProfiler.java:103:177:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:diirt-graphene_e76b36_4bd9e3graphene-profile/src/main/java/org/epics/graphene/profile/VisualProfiler.java:103:177:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:doanduyhai-Achilles_282b45_cd7e60src/main/java/fr/doan/achilles/entity/metadata/JoinWideMapMeta.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:drnoa-schemaspy_5be17e_0578e0src/main/java/net/sourceforge/schemaspy/view/HtmlTablePage.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:drnoa-schemaspy_8177f5_791964src/main/java/net/sourceforge/schemaspy/view/HtmlColumnsPage.java:266:271:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:drnoa-schemaspy_af31f6_953f19src/main/java/net/sourceforge/schemaspy/view/HtmlColumnsPage.java:299:304:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:droolsjbpm-guvnor_311325_194419guvnor-m2repo-editor/guvnor-m2repo-editor-backend/src/test/java/org/guvnor/m2repo/backend/server/M2RepositoryTest.java:208:227:SE_BAD_FIELD_INNER_CLASS -#Null_Violation_Hunk:droolsjbpm-guvnor_311325_194419guvnor-m2repo-editor/guvnor-m2repo-editor-backend/src/test/java/org/guvnor/m2repo/backend/server/M2RepositoryTest.java:208:227:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:droolsjbpm-guvnor_311325_194419guvnor-m2repo-editor/guvnor-m2repo-editor-backend/src/test/java/org/guvnor/m2repo/backend/server/M2RepositoryTest.java:208:227:SIC_INNER_SHOULD_BE_STATIC_ANON -#Null_Violation_Hunk:droolsjbpm-optaplanner_09dc24_7df62fdrools-planner-examples/src/main/java/org/drools/planner/examples/nurserostering/domain/solver/EmployeeStrengthComparator.java:24:33:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:droolsjbpm-optaplanner_09dc24_7df62fdrools-planner-examples/src/main/java/org/drools/planner/examples/nurserostering/domain/solver/ShiftAssignmentDifficultyComparator.java:25:34:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:droolsjbpm-optaplanner_15f1a4_4def4cdrools-planner-core/src/main/java/org/drools/planner/core/move/generic/GenericChainedChangeMove.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:droolsjbpm-optaplanner_1deb83_97637bdrools-planner-examples/src/main/java/org/drools/planner/examples/pas/solver/solution/initializer/PatientAdmissionScheduleStartingSolutionInitializer.java:183:209:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:droolsjbpm-optaplanner_2d1a14_1deb83drools-planner-examples/src/main/java/org/drools/planner/examples/pas/solver/move/factory/BedDesignationPillarPartSwitchMoveFactory.java:129:231:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:droolsjbpm-optaplanner_66578c_08d370drools-planner-examples/src/main/java/org/drools/planner/examples/nurserostering/domain/solver/ShiftAssignmentDifficultyComparator.java:25:34:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:droolsjbpm-optaplanner_68aada_958f1edrools-planner-examples/src/main/java/org/drools/planner/examples/cloudbalancing/solver/solution/initializer/CloudAssignmentDifficultyComparator.java:24:31:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE 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-#Null_Violation_Hunk:droolsjbpm-optaplanner_88b779_3193bddrools-planner-core/src/main/java/org/drools/planner/benchmark/statistic/calculatecount/CalculateCountStatistic.java:101:120:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:droolsjbpm-optaplanner_88b779_3193bddrools-planner-core/src/main/java/org/drools/planner/benchmark/statistic/memoryuse/MemoryUseStatistic.java:101:120:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:droolsjbpm-optaplanner_8d7e1b_98615cdrools-planner-examples/src/main/java/org/drools/planner/examples/cloudbalancing/domain/solver/CloudAssignmentDifficultyComparator.java:24:31:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:droolsjbpm-optaplanner_8d7e1b_98615cdrools-planner-examples/src/main/java/org/drools/planner/examples/cloudbalancing/domain/solver/CloudComputerStrengthComparator.java:25:32:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:droolsjbpm-optaplanner_97637b_bfba74drools-planner-examples/src/main/java/org/drools/planner/examples/tsp/swingui/TspWorldPanel.java:77:116:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:droolsjbpm-optaplanner_98615c_fc8eefdrools-planner-examples/src/main/java/org/drools/planner/examples/common/business/SolutionBusiness.java:234:240:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:droolsjbpm-optaplanner_c7ea58_e01c7ddrools-planner-examples/src/main/java/org/drools/planner/examples/examination/solver/solution/initializer/ExaminationStartingSolutionInitializer.java:292:342:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:droolsjbpm-optaplanner_c8808e_cfabf4drools-planner-examples/src/main/java/org/drools/planner/examples/nurserostering/solver/solution/initializer/NurseRosteringStartingSolutionInitializer.java:111:124:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:droolsjbpm-optaplanner_cfabf4_a16115drools-planner-examples/src/main/java/org/drools/planner/examples/pas/domain/solver/BedStrengthComparator.java:25:34:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:droolsjbpm-optaplanner_d40a71_f9e868drools-planner-core/src/main/java/org/drools/planner/benchmark/WorstScoreSolverBenchmarkComparator.java:26:33:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:droolsjbpm-optaplanner_dfdbcd_2e8fa5drools-planner-core/src/main/java/org/drools/planner/core/score/comparator/NaturalScoreComparator.java:26:29:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:droolsjbpm-optaplanner_e01c7d_09dc24drools-planner-examples/src/main/java/org/drools/planner/examples/examination/solver/solution/initializer/ExaminationStartingSolutionInitializer.java:351:370:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:droolsjbpm-optaplanner_eed84a_8c3e8edrools-planner-core/src/main/java/org/drools/planner/benchmark/statistic/bestscore/BestScoreStatistic.java:108:127:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:droolsjbpm-optaplanner_f3cd6c_8d7e1bdrools-planner-core/src/main/java/org/drools/planner/core/solution/director/DefaultSolutionDirector.java:216:244:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:droolsjbpm-optaplanner_f83456_7c5679drools-planner-core/src/main/java/org/drools/planner/benchmark/core/comparator/WorstScoreSolverBenchmarkRankingComparator.java:28:35:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:droolsjbpm-optaplanner_fc8eef_2974a6drools-planner-examples/src/main/java/org/drools/planner/examples/common/domain/PersistableIdComparator.java:23:26:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:dropwizard-metrics_0b95f7_6464b4metrics-core/src/main/java/com/yammer/metrics/reporting/JmxReporter.java:149:216:SIC_INNER_SHOULD_BE_STATIC 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-#Null_Violation_Hunk:EngineHub-CommandHelper_1fc018_2ed314src/main/java/com/laytonsmith/core/functions/Compiler.java:538:559:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:EngineHub-CommandHelper_2100ea_92a989src/main/java/com/laytonsmith/core/exceptions/CRE/CREBadEntityException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_2100ea_92a989src/main/java/com/laytonsmith/core/exceptions/CRE/CREBadEntityTypeException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_2100ea_92a989src/main/java/com/laytonsmith/core/exceptions/CRE/CREBindException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_2100ea_92a989src/main/java/com/laytonsmith/core/exceptions/CRE/CRECastException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_2100ea_92a989src/main/java/com/laytonsmith/core/exceptions/CRE/CREEnchantmentException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_2100ea_92a989src/main/java/com/laytonsmith/core/exceptions/CRE/CREFormatException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_2100ea_92a989src/main/java/com/laytonsmith/core/exceptions/CRE/CREIllegalArgumentException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_2100ea_92a989src/main/java/com/laytonsmith/core/exceptions/CRE/CREIncludeException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_2100ea_92a989src/main/java/com/laytonsmith/core/exceptions/CRE/CREIndexOverflowException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_2100ea_92a989src/main/java/com/laytonsmith/core/exceptions/CRE/CREInsufficientArgumentsException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_2100ea_92a989src/main/java/com/laytonsmith/core/exceptions/CRE/CREInsufficientPermissionException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_2100ea_92a989src/main/java/com/laytonsmith/core/exceptions/CRE/CREInvalidPluginException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_2100ea_92a989src/main/java/com/laytonsmith/core/exceptions/CRE/CREInvalidProcedureException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_2100ea_92a989src/main/java/com/laytonsmith/core/exceptions/CRE/CREInvalidWorldException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_2100ea_92a989src/main/java/com/laytonsmith/core/exceptions/CRE/CREIOException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_2100ea_92a989src/main/java/com/laytonsmith/core/exceptions/CRE/CRELengthException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_2100ea_92a989src/main/java/com/laytonsmith/core/exceptions/CRE/CRENotFoundException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_2100ea_92a989src/main/java/com/laytonsmith/core/exceptions/CRE/CRENullPointerException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_2100ea_92a989src/main/java/com/laytonsmith/core/exceptions/CRE/CREPlayerOfflineException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_2100ea_92a989src/main/java/com/laytonsmith/core/exceptions/CRE/CREPluginChannelException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_2100ea_92a989src/main/java/com/laytonsmith/core/exceptions/CRE/CREPluginInternalException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_2100ea_92a989src/main/java/com/laytonsmith/core/exceptions/CRE/CRERangeException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_2100ea_92a989src/main/java/com/laytonsmith/core/exceptions/CRE/CREReadOnlyException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_2100ea_92a989src/main/java/com/laytonsmith/core/exceptions/CRE/CREScoreboardException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_2100ea_92a989src/main/java/com/laytonsmith/core/exceptions/CRE/CRESecurityException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_2100ea_92a989src/main/java/com/laytonsmith/core/exceptions/CRE/CREShellException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_2100ea_92a989src/main/java/com/laytonsmith/core/exceptions/CRE/CRESQLException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_2100ea_92a989src/main/java/com/laytonsmith/core/exceptions/CRE/CREUnageableMobException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_2100ea_92a989src/main/java/com/laytonsmith/core/exceptions/CRE/CREUntameableMobException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_2100ea_92a989src/main/java/com/laytonsmith/core/functions/PlayerManagement.java:750:766:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:EngineHub-CommandHelper_2100ea_92a989src/main/java/com/laytonsmith/core/functions/PlayerManagement.java:1101:1117:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:EngineHub-CommandHelper_29e0b4_e1308fsrc/main/java/com/laytonsmith/abstraction/AbstractConvertor.java:147:213:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:EngineHub-CommandHelper_29e0b4_e1308fsrc/main/java/com/laytonsmith/core/functions/PlayerManagement.java:1066:1082:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:EngineHub-CommandHelper_29e0b4_e1308fsrc/main/java/com/laytonsmith/core/functions/PlayerManagement.java:726:742:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:EngineHub-CommandHelper_29e0b4_e1308fsrc/main/java/com/laytonsmith/core/functions/StringHandling.java:59:141:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:EngineHub-CommandHelper_29e0b4_e1308fsrc/main/java/com/laytonsmith/core/functions/StringHandling.java:1074:1470:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:EngineHub-CommandHelper_2ae44f_212764src/main/java/com/laytonsmith/core/functions/StringHandling.java:1074:1470:NM_CLASS_NAMING_CONVENTION -#Illegal_Line_Position:EngineHub-CommandHelper_2ed314_af92d8src/main/java/com/laytonsmith/core/exceptions/CRE/AbstractCREException.java:-1:-1:UWF_NULL_FIELD -#Null_Violation_Hunk:EngineHub-CommandHelper_306053_6dda0csrc/main/java/com/laytonsmith/core/functions/Recipes.java:32:46:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:EngineHub-CommandHelper_3ae4af_38572fsrc/main/java/com/laytonsmith/core/functions/Recipes.java:32:46:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:EngineHub-CommandHelper_4958cd_46c453src/main/java/com/laytonsmith/abstraction/bukkit/entities/BukkitMCAgeable.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:EngineHub-CommandHelper_4958cd_46c453src/main/java/com/laytonsmith/abstraction/bukkit/entities/BukkitMCArmorStand.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:EngineHub-CommandHelper_4958cd_46c453src/main/java/com/laytonsmith/abstraction/bukkit/entities/BukkitMCEntity.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:EngineHub-CommandHelper_4958cd_46c453src/main/java/com/laytonsmith/abstraction/bukkit/entities/BukkitMCFireball.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:EngineHub-CommandHelper_4958cd_46c453src/main/java/com/laytonsmith/abstraction/bukkit/entities/BukkitMCHanging.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:EngineHub-CommandHelper_4958cd_46c453src/main/java/com/laytonsmith/abstraction/bukkit/entities/BukkitMCHumanEntity.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:EngineHub-CommandHelper_4958cd_46c453src/main/java/com/laytonsmith/abstraction/bukkit/entities/BukkitMCLivingEntity.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:EngineHub-CommandHelper_4958cd_46c453src/main/java/com/laytonsmith/abstraction/bukkit/entities/BukkitMCPainting.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:EngineHub-CommandHelper_4958cd_46c453src/main/java/com/laytonsmith/abstraction/bukkit/entities/BukkitMCPig.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:EngineHub-CommandHelper_4958cd_46c453src/main/java/com/laytonsmith/abstraction/bukkit/entities/BukkitMCProjectile.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:EngineHub-CommandHelper_4958cd_46c453src/main/java/com/laytonsmith/abstraction/bukkit/entities/BukkitMCVehicle.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:EngineHub-CommandHelper_5932e4_073901src/main/java/com/laytonsmith/core/functions/StringHandling.java:1100:1496:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:EngineHub-CommandHelper_59eed6_5be285src/main/java/com/laytonsmith/core/functions/PlayerManagement.java:1113:1129:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:EngineHub-CommandHelper_59eed6_5be285src/main/java/com/laytonsmith/core/functions/PlayerManagement.java:762:778:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:EngineHub-CommandHelper_6a2223_33e658src/main/java/com/laytonsmith/core/exceptions/CRE/CREBadEntityException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_6a2223_33e658src/main/java/com/laytonsmith/core/exceptions/CRE/CREBadEntityTypeException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_6a2223_33e658src/main/java/com/laytonsmith/core/exceptions/CRE/CREBindException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_6a2223_33e658src/main/java/com/laytonsmith/core/exceptions/CRE/CRECastException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_6a2223_33e658src/main/java/com/laytonsmith/core/exceptions/CRE/CREEnchantmentException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_6a2223_33e658src/main/java/com/laytonsmith/core/exceptions/CRE/CREFormatException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_6a2223_33e658src/main/java/com/laytonsmith/core/exceptions/CRE/CREIllegalArgumentException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_6a2223_33e658src/main/java/com/laytonsmith/core/exceptions/CRE/CREIncludeException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_6a2223_33e658src/main/java/com/laytonsmith/core/exceptions/CRE/CREIndexOverflowException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_6a2223_33e658src/main/java/com/laytonsmith/core/exceptions/CRE/CREInsufficientArgumentsException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_6a2223_33e658src/main/java/com/laytonsmith/core/exceptions/CRE/CREInsufficientPermissionException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_6a2223_33e658src/main/java/com/laytonsmith/core/exceptions/CRE/CREInvalidPluginException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_6a2223_33e658src/main/java/com/laytonsmith/core/exceptions/CRE/CREInvalidProcedureException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_6a2223_33e658src/main/java/com/laytonsmith/core/exceptions/CRE/CREInvalidWorldException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_6a2223_33e658src/main/java/com/laytonsmith/core/exceptions/CRE/CREIOException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_6a2223_33e658src/main/java/com/laytonsmith/core/exceptions/CRE/CRELengthException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_6a2223_33e658src/main/java/com/laytonsmith/core/exceptions/CRE/CRENotFoundException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_6a2223_33e658src/main/java/com/laytonsmith/core/exceptions/CRE/CRENullPointerException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_6a2223_33e658src/main/java/com/laytonsmith/core/exceptions/CRE/CREPlayerOfflineException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_6a2223_33e658src/main/java/com/laytonsmith/core/exceptions/CRE/CREPluginChannelException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_6a2223_33e658src/main/java/com/laytonsmith/core/exceptions/CRE/CREPluginInternalException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_6a2223_33e658src/main/java/com/laytonsmith/core/exceptions/CRE/CRERangeException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_6a2223_33e658src/main/java/com/laytonsmith/core/exceptions/CRE/CREReadOnlyException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_6a2223_33e658src/main/java/com/laytonsmith/core/exceptions/CRE/CREScoreboardException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_6a2223_33e658src/main/java/com/laytonsmith/core/exceptions/CRE/CRESecurityException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_6a2223_33e658src/main/java/com/laytonsmith/core/exceptions/CRE/CREShellException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_6a2223_33e658src/main/java/com/laytonsmith/core/exceptions/CRE/CRESQLException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_6a2223_33e658src/main/java/com/laytonsmith/core/exceptions/CRE/CREUnageableMobException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_6a2223_33e658src/main/java/com/laytonsmith/core/exceptions/CRE/CREUntameableMobException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_6a2223_33e658src/main/java/com/laytonsmith/core/functions/PlayerManagement.java:750:766:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:EngineHub-CommandHelper_6a2223_33e658src/main/java/com/laytonsmith/core/functions/PlayerManagement.java:1101:1117:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:EngineHub-CommandHelper_705090_3fe2f0src/main/java/com/laytonsmith/core/functions/StringHandling.java:1100:1496:NM_CLASS_NAMING_CONVENTION -#Illegal_Line_Position:EngineHub-CommandHelper_834b23_ccd7d2src/main/java/com/laytonsmith/aliasengine/Constructs/Construct.java:-1:-1:SE_TRANSIENT_FIELD_NOT_RESTORED -#Illegal_Line_Position:EngineHub-CommandHelper_85080f_6235ebsrc/main/java/com/laytonsmith/aliasengine/Constructs/Construct.java:-1:-1:SE_TRANSIENT_FIELD_NOT_RESTORED -#Null_Violation_Hunk:EngineHub-CommandHelper_98b2d0_6e5733src/main/java/com/laytonsmith/abstraction/AbstractConvertor.java:147:213:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:EngineHub-CommandHelper_98c749_c9814bsrc/main/java/com/laytonsmith/abstraction/AbstractConvertor.java:147:213:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:EngineHub-CommandHelper_98fb8d_b80351src/main/java/com/laytonsmith/abstraction/AbstractConvertor.java:147:213:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:EngineHub-CommandHelper_9e66bf_36836dsrc/main/java/com/laytonsmith/abstraction/AbstractConvertor.java:147:213:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:EngineHub-CommandHelper_9e66bf_36836dsrc/main/java/com/laytonsmith/core/functions/PlayerManagement.java:749:765:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:EngineHub-CommandHelper_9e66bf_36836dsrc/main/java/com/laytonsmith/core/functions/PlayerManagement.java:1100:1116:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:EngineHub-CommandHelper_9e66bf_36836dsrc/main/java/com/laytonsmith/core/functions/Recipes.java:30:44:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:EngineHub-CommandHelper_9e66bf_36836dsrc/main/java/com/laytonsmith/core/functions/StringHandling.java:62:158:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:EngineHub-CommandHelper_a1c615_845ee8src/main/java/com/laytonsmith/core/functions/StringHandling.java:62:158:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:EngineHub-CommandHelper_a97663_773f13src/main/java/com/laytonsmith/core/exceptions/CRE/CREBadEntityException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_a97663_773f13src/main/java/com/laytonsmith/core/exceptions/CRE/CREBadEntityTypeException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_a97663_773f13src/main/java/com/laytonsmith/core/exceptions/CRE/CREBindException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_a97663_773f13src/main/java/com/laytonsmith/core/exceptions/CRE/CRECastException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_a97663_773f13src/main/java/com/laytonsmith/core/exceptions/CRE/CREEnchantmentException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_a97663_773f13src/main/java/com/laytonsmith/core/exceptions/CRE/CREFormatException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_a97663_773f13src/main/java/com/laytonsmith/core/exceptions/CRE/CREIllegalArgumentException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_a97663_773f13src/main/java/com/laytonsmith/core/exceptions/CRE/CREIncludeException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_a97663_773f13src/main/java/com/laytonsmith/core/exceptions/CRE/CREIndexOverflowException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_a97663_773f13src/main/java/com/laytonsmith/core/exceptions/CRE/CREInsufficientArgumentsException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_a97663_773f13src/main/java/com/laytonsmith/core/exceptions/CRE/CREInsufficientPermissionException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_a97663_773f13src/main/java/com/laytonsmith/core/exceptions/CRE/CREInvalidPluginException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_a97663_773f13src/main/java/com/laytonsmith/core/exceptions/CRE/CREInvalidProcedureException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_a97663_773f13src/main/java/com/laytonsmith/core/exceptions/CRE/CREInvalidWorldException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_a97663_773f13src/main/java/com/laytonsmith/core/exceptions/CRE/CREIOException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_a97663_773f13src/main/java/com/laytonsmith/core/exceptions/CRE/CRELengthException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_a97663_773f13src/main/java/com/laytonsmith/core/exceptions/CRE/CRENotFoundException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_a97663_773f13src/main/java/com/laytonsmith/core/exceptions/CRE/CRENullPointerException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_a97663_773f13src/main/java/com/laytonsmith/core/exceptions/CRE/CREPlayerOfflineException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_a97663_773f13src/main/java/com/laytonsmith/core/exceptions/CRE/CREPluginChannelException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_a97663_773f13src/main/java/com/laytonsmith/core/exceptions/CRE/CREPluginInternalException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_a97663_773f13src/main/java/com/laytonsmith/core/exceptions/CRE/CRERangeException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_a97663_773f13src/main/java/com/laytonsmith/core/exceptions/CRE/CREReadOnlyException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_a97663_773f13src/main/java/com/laytonsmith/core/exceptions/CRE/CREScoreboardException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_a97663_773f13src/main/java/com/laytonsmith/core/exceptions/CRE/CRESecurityException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_a97663_773f13src/main/java/com/laytonsmith/core/exceptions/CRE/CREShellException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_a97663_773f13src/main/java/com/laytonsmith/core/exceptions/CRE/CRESQLException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_a97663_773f13src/main/java/com/laytonsmith/core/exceptions/CRE/CREUnageableMobException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_a97663_773f13src/main/java/com/laytonsmith/core/exceptions/CRE/CREUntameableMobException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_a97663_773f13src/main/java/com/laytonsmith/core/functions/PlayerManagement.java:1101:1117:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:EngineHub-CommandHelper_a97663_773f13src/main/java/com/laytonsmith/core/functions/PlayerManagement.java:750:766:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:EngineHub-CommandHelper_b4b41a_e6ca12src/main/java/com/laytonsmith/core/functions/StringHandling.java:1101:1497:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:EngineHub-CommandHelper_b78141_eb3dbbsrc/main/java/com/laytonsmith/abstraction/bukkit/entities/BukkitMCAgeable.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:EngineHub-CommandHelper_b78141_eb3dbbsrc/main/java/com/laytonsmith/abstraction/bukkit/entities/BukkitMCArmorStand.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:EngineHub-CommandHelper_b78141_eb3dbbsrc/main/java/com/laytonsmith/abstraction/bukkit/entities/BukkitMCEntity.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:EngineHub-CommandHelper_b78141_eb3dbbsrc/main/java/com/laytonsmith/abstraction/bukkit/entities/BukkitMCFireball.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:EngineHub-CommandHelper_b78141_eb3dbbsrc/main/java/com/laytonsmith/abstraction/bukkit/entities/BukkitMCHanging.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:EngineHub-CommandHelper_b78141_eb3dbbsrc/main/java/com/laytonsmith/abstraction/bukkit/entities/BukkitMCHumanEntity.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:EngineHub-CommandHelper_b78141_eb3dbbsrc/main/java/com/laytonsmith/abstraction/bukkit/entities/BukkitMCLivingEntity.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:EngineHub-CommandHelper_b78141_eb3dbbsrc/main/java/com/laytonsmith/abstraction/bukkit/entities/BukkitMCPainting.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:EngineHub-CommandHelper_b78141_eb3dbbsrc/main/java/com/laytonsmith/abstraction/bukkit/entities/BukkitMCPig.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:EngineHub-CommandHelper_b78141_eb3dbbsrc/main/java/com/laytonsmith/abstraction/bukkit/entities/BukkitMCProjectile.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:EngineHub-CommandHelper_b78141_eb3dbbsrc/main/java/com/laytonsmith/abstraction/bukkit/entities/BukkitMCVehicle.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:EngineHub-CommandHelper_c4d85c_e2f954src/main/java/com/laytonsmith/core/functions/StringHandling.java:62:158:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:EngineHub-CommandHelper_cd7172_ab76f4src/main/java/com/laytonsmith/core/exceptions/CRE/CREBadEntityException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_cd7172_ab76f4src/main/java/com/laytonsmith/core/exceptions/CRE/CREBadEntityTypeException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_cd7172_ab76f4src/main/java/com/laytonsmith/core/exceptions/CRE/CREBindException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_cd7172_ab76f4src/main/java/com/laytonsmith/core/exceptions/CRE/CRECastException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_cd7172_ab76f4src/main/java/com/laytonsmith/core/exceptions/CRE/CREEnchantmentException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_cd7172_ab76f4src/main/java/com/laytonsmith/core/exceptions/CRE/CREFormatException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_cd7172_ab76f4src/main/java/com/laytonsmith/core/exceptions/CRE/CREIllegalArgumentException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_cd7172_ab76f4src/main/java/com/laytonsmith/core/exceptions/CRE/CREIncludeException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_cd7172_ab76f4src/main/java/com/laytonsmith/core/exceptions/CRE/CREIndexOverflowException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_cd7172_ab76f4src/main/java/com/laytonsmith/core/exceptions/CRE/CREInsufficientArgumentsException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_cd7172_ab76f4src/main/java/com/laytonsmith/core/exceptions/CRE/CREInsufficientPermissionException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_cd7172_ab76f4src/main/java/com/laytonsmith/core/exceptions/CRE/CREInvalidPluginException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_cd7172_ab76f4src/main/java/com/laytonsmith/core/exceptions/CRE/CREInvalidProcedureException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_cd7172_ab76f4src/main/java/com/laytonsmith/core/exceptions/CRE/CREInvalidWorldException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_cd7172_ab76f4src/main/java/com/laytonsmith/core/exceptions/CRE/CREIOException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_cd7172_ab76f4src/main/java/com/laytonsmith/core/exceptions/CRE/CRELengthException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_cd7172_ab76f4src/main/java/com/laytonsmith/core/exceptions/CRE/CRENotFoundException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_cd7172_ab76f4src/main/java/com/laytonsmith/core/exceptions/CRE/CRENullPointerException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_cd7172_ab76f4src/main/java/com/laytonsmith/core/exceptions/CRE/CREPlayerOfflineException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_cd7172_ab76f4src/main/java/com/laytonsmith/core/exceptions/CRE/CREPluginChannelException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_cd7172_ab76f4src/main/java/com/laytonsmith/core/exceptions/CRE/CREPluginInternalException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_cd7172_ab76f4src/main/java/com/laytonsmith/core/exceptions/CRE/CRERangeException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_cd7172_ab76f4src/main/java/com/laytonsmith/core/exceptions/CRE/CREReadOnlyException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_cd7172_ab76f4src/main/java/com/laytonsmith/core/exceptions/CRE/CREScoreboardException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_cd7172_ab76f4src/main/java/com/laytonsmith/core/exceptions/CRE/CRESecurityException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_cd7172_ab76f4src/main/java/com/laytonsmith/core/exceptions/CRE/CREShellException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_cd7172_ab76f4src/main/java/com/laytonsmith/core/exceptions/CRE/CRESQLException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_cd7172_ab76f4src/main/java/com/laytonsmith/core/exceptions/CRE/CREUnageableMobException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_cd7172_ab76f4src/main/java/com/laytonsmith/core/exceptions/CRE/CREUntameableMobException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:EngineHub-CommandHelper_dedc17_ee3adcsrc/main/java/com/laytonsmith/core/functions/StringHandling.java:1100:1496:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:EngineHub-CommandHelper_ea5042_c0aadbsrc/main/java/com/laytonsmith/abstraction/AbstractConvertor.java:147:213:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:EngineHub-CommandHelper_f51d03_d8507bsrc/main/java/com/laytonsmith/core/functions/StringHandling.java:1100:1496:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:ESAPI-esapi-java-legacy_456c1c_75e54esrc/main/java/org/owasp/esapi/Encoder.java:117:117:MS_MUTABLE_ARRAY -#Null_Violation_Hunk:ESAPI-esapi-java-legacy_456c1c_75e54esrc/main/java/org/owasp/esapi/Encoder.java:116:116:MS_MUTABLE_ARRAY -#Illegal_Line_Position:ESAPI-esapi-java-legacy_4941f5_5d38d1src/main/java/org/owasp/esapi/crypto/CipherSpec.java:-1:-1:SE_TRANSIENT_FIELD_NOT_RESTORED -#Null_Violation_Hunk:ESAPI-esapi-java-legacy_533a22_f30905src/main/java/org/owasp/esapi/SafeFile.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:ESAPI-esapi-java-legacy_7bfb08_7c10dcsrc/main/java/org/owasp/esapi/SafeFile.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:ESAPI-esapi-java-legacy_bb1f83_3b3a45src/main/java/org/owasp/esapi/reference/FileBasedAuthenticator.java:224:236:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:eXistence-TeeTime_088233_0b650csrc/main/java/teetime/framework/pipe/PipeFactoryRegistry.java:12:12:MS_SHOULD_BE_FINAL -#Null_Violation_Hunk:eXistence-TeeTime_5516cb_03e71dsrc/main/java/teetime/framework/Analysis.java:44:44:UC_USELESS_VOID_METHOD -#Illegal_Line_Position:eXistence-TeeTime_8b598c_b1d8f7src/main/java/teetime/framework/exceptionHandling/TerminateException.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:eXistence-TeeTime_9dd3d3_f15d28src/main/java/teetime/framework/Analysis.java:44:44:UC_USELESS_VOID_METHOD -#Illegal_Line_Position:eXistence-TeeTime_b12b6f_6a869fsrc/main/java/teetime/stage/basic/merger/Merger.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:eXistence-TeeTime_c583f8_49c92fsrc/main/java/teetime/framework/pipe/PipeFactoryRegistry.java:10:10:MS_SHOULD_BE_FINAL -#Null_Violation_Hunk:eXistence-TeeTime_ed3c63_7b8894src/main/java/teetime/framework/Analysis.java:44:44:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:eXistence-TeeTime_f9ab1a_948956src/main/java/teetime/variant/explicitScheduling/stage/stringBuffer/handler/AbstractDataTypeHandler.java:32:32:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:FallenMoonNetwork-CanaryLib_3a257f_b60e32src/main/java/net/canarymod/user/Group.java:114:114:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:FallenMoonNetwork-CanaryLib_a73a2a_fde527src/main/java/net/canarymod/plugin/PluginLoader.java:695:728:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:FallenMoonNetwork-CanaryLib_e6ac81_74f4d5src/main/java/net/canarymod/backbone/GroupAccess.java:48:48:URF_UNREAD_FIELD -#Illegal_Line_Position:FasterXML-jackson-core_4646ed_a8bc72src/main/java/com/fasterxml/jackson/core/io/IOContext.java:-1:-1:CI_CONFUSED_INHERITANCE -#Illegal_Line_Position:FasterXML-jackson-core_594a75_e574b3src/main/java/com/fasterxml/jackson/core/json/UTF8StreamJsonParser.java:-1:-1:CI_CONFUSED_INHERITANCE -#Null_Violation_Hunk:FasterXML-jackson-databind_034f3c_ef0022src/main/java/com/fasterxml/jackson/databind/PropertyNamingStrategy.java:282:306:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_034f3c_ef0022src/main/java/com/fasterxml/jackson/databind/ser/std/StdKeySerializers.java:220:229:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_034f3c_ef0022src/main/java/com/fasterxml/jackson/databind/ser/std/StdKeySerializers.java:232:241:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_034f3c_ef0022src/main/java/com/fasterxml/jackson/databind/ser/std/StdSerializer.java:45:298:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:FasterXML-jackson-databind_1875fc_5fda49src/main/java/com/fasterxml/jackson/databind/ext/DOMDeserializer.java:57:62:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_1875fc_5fda49src/main/java/com/fasterxml/jackson/databind/ext/DOMDeserializer.java:48:53:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_2e364b_6c6173src/main/java/com/fasterxml/jackson/databind/ser/std/StdJdkSerializers.java:139:159:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_2e364b_6c6173src/main/java/com/fasterxml/jackson/databind/ser/std/StdKeySerializers.java:81:89:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_2e364b_6c6173src/main/java/com/fasterxml/jackson/databind/ser/std/StdKeySerializers.java:103:111:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_2e364b_6c6173src/main/java/com/fasterxml/jackson/databind/ser/std/StdKeySerializers.java:71:78:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_308ed4_44f35asrc/main/java/com/fasterxml/jackson/databind/PropertyNamingStrategy.java:282:306:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_308ed4_44f35asrc/main/java/com/fasterxml/jackson/databind/ser/std/StdKeySerializers.java:232:241:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_308ed4_44f35asrc/main/java/com/fasterxml/jackson/databind/ser/std/StdKeySerializers.java:220:229:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_308ed4_44f35asrc/main/java/com/fasterxml/jackson/databind/ser/std/StdSerializer.java:45:298:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:FasterXML-jackson-databind_386e9f_df0408src/main/java/com/fasterxml/jackson/databind/PropertyNamingStrategy.java:282:306:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_386e9f_df0408src/main/java/com/fasterxml/jackson/databind/ser/std/StdKeySerializers.java:232:241:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_386e9f_df0408src/main/java/com/fasterxml/jackson/databind/ser/std/StdKeySerializers.java:220:229:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_386e9f_df0408src/main/java/com/fasterxml/jackson/databind/ser/std/StdSerializer.java:45:298:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:FasterXML-jackson-databind_3aee59_a49ab9src/main/java/com/fasterxml/jackson/databind/PropertyNamingStrategy.java:282:306:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_3aee59_a49ab9src/main/java/com/fasterxml/jackson/databind/ser/std/StdKeySerializers.java:220:229:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_3aee59_a49ab9src/main/java/com/fasterxml/jackson/databind/ser/std/StdKeySerializers.java:232:241:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_3aee59_a49ab9src/main/java/com/fasterxml/jackson/databind/ser/std/StdSerializer.java:45:298:RI_REDUNDANT_INTERFACES -#Illegal_Line_Position:FasterXML-jackson-databind_4312a2_5d2b25src/main/java/com/fasterxml/jackson/databind/deser/DeserializerCache.java:-1:-1:CI_CONFUSED_INHERITANCE -#Null_Violation_Hunk:FasterXML-jackson-databind_4312a2_5d2b25src/main/java/com/fasterxml/jackson/databind/ser/std/StdJdkSerializers.java:139:159:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_4312a2_5d2b25src/main/java/com/fasterxml/jackson/databind/ser/std/StdKeySerializers.java:71:78:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_4312a2_5d2b25src/main/java/com/fasterxml/jackson/databind/ser/std/StdKeySerializers.java:81:89:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_4312a2_5d2b25src/main/java/com/fasterxml/jackson/databind/ser/std/StdKeySerializers.java:103:111:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_5f0932_384e64src/main/java/com/fasterxml/jackson/databind/ser/std/StdJdkSerializers.java:139:159:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_5f0932_384e64src/main/java/com/fasterxml/jackson/databind/ser/std/StdKeySerializers.java:71:78:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_5f0932_384e64src/main/java/com/fasterxml/jackson/databind/ser/std/StdKeySerializers.java:103:111:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_5f0932_384e64src/main/java/com/fasterxml/jackson/databind/ser/std/StdKeySerializers.java:81:89:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_70d961_386e9fsrc/main/java/com/fasterxml/jackson/databind/ser/std/StdJdkSerializers.java:152:172:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_70d961_386e9fsrc/main/java/com/fasterxml/jackson/databind/ser/std/StdKeySerializers.java:103:111:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_70d961_386e9fsrc/main/java/com/fasterxml/jackson/databind/ser/std/StdKeySerializers.java:71:78:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:FasterXML-jackson-databind_726b6e_e2abd0src/main/java/com/fasterxml/jackson/databind/cfg/BaseSettings.java:-1:-1:CI_CONFUSED_INHERITANCE -#Illegal_Line_Position:FasterXML-jackson-databind_726b6e_e2abd0src/main/java/com/fasterxml/jackson/databind/deser/impl/PropertyBasedCreator.java:-1:-1:CI_CONFUSED_INHERITANCE -#Null_Violation_Hunk:FasterXML-jackson-databind_726b6e_e2abd0src/main/java/com/fasterxml/jackson/databind/ser/std/StdJdkSerializers.java:139:159:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_726b6e_e2abd0src/main/java/com/fasterxml/jackson/databind/ser/std/StdKeySerializers.java:71:78:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_726b6e_e2abd0src/main/java/com/fasterxml/jackson/databind/ser/std/StdKeySerializers.java:103:111:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_726b6e_e2abd0src/main/java/com/fasterxml/jackson/databind/ser/std/StdKeySerializers.java:81:89:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:FasterXML-jackson-databind_726b6e_e2abd0src/main/java/com/fasterxml/jackson/databind/util/TokenBuffer.java:-1:-1:CI_CONFUSED_INHERITANCE -#Illegal_Line_Position:FasterXML-jackson-databind_73f54a_be2bb2src/main/java/com/fasterxml/jackson/databind/cfg/BaseSettings.java:-1:-1:CI_CONFUSED_INHERITANCE -#Illegal_Line_Position:FasterXML-jackson-databind_73f54a_be2bb2src/main/java/com/fasterxml/jackson/databind/introspect/AnnotatedField.java:-1:-1:CI_CONFUSED_INHERITANCE -#Null_Violation_Hunk:FasterXML-jackson-databind_73f54a_be2bb2src/main/java/com/fasterxml/jackson/databind/ser/std/StdJdkSerializers.java:139:159:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_73f54a_be2bb2src/main/java/com/fasterxml/jackson/databind/ser/std/StdKeySerializers.java:81:89:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_73f54a_be2bb2src/main/java/com/fasterxml/jackson/databind/ser/std/StdKeySerializers.java:103:111:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_73f54a_be2bb2src/main/java/com/fasterxml/jackson/databind/ser/std/StdKeySerializers.java:71:78:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:FasterXML-jackson-databind_73f54a_be2bb2src/main/java/com/fasterxml/jackson/databind/type/TypeFactory.java:-1:-1:CI_CONFUSED_INHERITANCE -#Null_Violation_Hunk:FasterXML-jackson-databind_75a973_ce1112src/main/java/com/fasterxml/jackson/databind/deser/std/JdkDeserializers.java:125:136:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_7ed2d0_d02376src/main/java/com/fasterxml/jackson/databind/PropertyNamingStrategy.java:282:306:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_7ed2d0_d02376src/main/java/com/fasterxml/jackson/databind/ser/std/StdKeySerializers.java:232:241:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_7ed2d0_d02376src/main/java/com/fasterxml/jackson/databind/ser/std/StdKeySerializers.java:220:229:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_7ed2d0_d02376src/main/java/com/fasterxml/jackson/databind/ser/std/StdSerializer.java:45:298:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:FasterXML-jackson-databind_871607_290f9asrc/main/java/com/fasterxml/jackson/databind/PropertyNamingStrategy.java:282:306:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:FasterXML-jackson-databind_871607_290f9asrc/main/java/com/fasterxml/jackson/databind/ser/std/StdKeySerializers.java:220:229:SE_NO_SERIALVERSIONID 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-#Null_Violation_Hunk:gwtbootstrap-gwt-bootstrap_ff5425_dcae62src/main/java/com/geekvigarista/gwt/bootstrap/client/ui/topbar/Topbar.java:65:68:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:gwtbootstrap3-gwtbootstrap3_40790e_f5b339gwtbootstrap3/src/main/java/org/gwtbootstrap3/client/ui/ValueListBox.java:42:52:NM_SAME_SIMPLE_NAME_AS_SUPERCLASS -#Null_Violation_Hunk:gwtbootstrap3-gwtbootstrap3_425cec_eab7bagwtbootstrap3/src/main/java/org/gwtbootstrap3/client/ui/Pagination.java:35:65:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:gwtbootstrap3-gwtbootstrap3_985b26_357b70gwtbootstrap3/src/main/java/org/gwtbootstrap3/client/ui/ValueListBox.java:42:52:NM_SAME_SIMPLE_NAME_AS_SUPERCLASS -#Null_Violation_Hunk:gwtbootstrap3-gwtbootstrap3_a37d89_8fe5e5gwtbootstrap3/src/main/java/org/gwtbootstrap3/client/ui/Pagination.java:35:65:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:gwtbootstrap3-gwtbootstrap3_f74c63_384f05gwtbootstrap3/src/main/java/org/gwtbootstrap3/client/ui/Well.java:45:71:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:h2oai-h2o_05e324_6a950asrc/test/java/hex/PrateemTest.java:40:49:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:h2oai-h2o_35081e_05e324src/test/java/hex/PrateemTest.java:54:54:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:h2oai-h2o_4f392e_6a6dc6src/main/java/water/H2O.java:21:21:MS_CANNOT_BE_FINAL -#Null_Violation_Hunk:h2oai-h2o_7744fc_f5d524src/main/java/water/H2O.java:21:21:MS_CANNOT_BE_FINAL -#Null_Violation_Hunk:h2oai-h2o_9286b3_694efasrc/main/java/water/H2O.java:21:21:MS_CANNOT_BE_FINAL -#Null_Violation_Hunk:h2oai-h2o_9c8bd5_55b6e4src/main/java/water/H2O.java:103:103:MS_CANNOT_BE_FINAL -#Null_Violation_Hunk:h2oai-h2o_a99ae6_d70a4bsrc/test/java/hex/drf/DRFTest.java:228:276:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:h2oai-h2o_a99ae6_d70a4bsrc/test/java/hex/gbm/GBMTest.java:360:408:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:h2oai-h2o_affc07_9b08bcsrc/main/java/water/H2O.java:148:148:MS_CANNOT_BE_FINAL -#Null_Violation_Hunk:h2oai-h2o_affc07_9b08bcsrc/main/java/water/util/Log.java:150:150:MS_SHOULD_BE_FINAL -#Null_Violation_Hunk:h2oai-h2o_ed83df_8d6397src/main/java/hex/EvalModelAttrib.java:46:57:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:harrifeng-java-in-action_0ea5b3_8e0ec3src/main/java/org/hfeng/misc/test/Solution.java:26:26:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:hector-client-hector_23306e_3a8b6bsrc/main/java/me/prettyprint/cassandra/service/CassandraClientPoolImpl.java:168:229:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:hector-client-hector_349604_e241e7src/main/java/me/prettyprint/cassandra/service/CassandraClientImpl.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:hector-client-hector_8690db_268750src/main/java/me/prettyprint/cassandra/service/CassandraClientPoolImpl.java:168:229:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:hector-client-hector_c6d30f_007639src/main/java/me/prettyprint/cassandra/service/CassandraClientPoolImpl.java:168:229:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:hector-client-hector_e241e7_d238f2src/main/java/me/prettyprint/cassandra/service/CassandraClientImpl.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:hector-client-hector_f25eba_90701esrc/main/java/me/prettyprint/cassandra/service/CassandraClientPoolImpl.java:168:229:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:huangyingw-blablacode_040850_79f523src/main/java/binary_tree_postorder_traversal/BinaryTreePostorderTraversal.java:10:56:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:huangyingw-blablacode_351bdd_e07405src/main/java/add_and_search_word___data_structure_design/AddandSearchWordDatastructuredesign.java:8:98:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:huangyingw-blablacode_5b48d9_040850src/main/java/binary_tree_preorder_traversal/BinaryTreePreorderTraversal.java:11:60:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:huangyingw-blablacode_7c4398_b12212src/main/java/reverse_linked_list/ReverseLinkedList.java:7:28:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:huangyingw-blablacode_8756ab_bf8fa6src/main/java/reverse_linked_list/ReverseLinkedList.java:51:73:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:huangyingw-blablacode_d1c7f3_ddf5fasrc/main/java/binary_tree_inorder_traversal/BinaryTreeInorderTraversal.java:40:59:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:huangyingw-blablacode_d1c7f3_ddf5fasrc/main/java/binary_tree_inorder_traversal/BinaryTreeInorderTraversal.java:12:36:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_2643f1_90ce03src/main/java/io/seqware/pancancer/CgpCnIndelSnvStrWorkflow.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_55430e_6c9235src/main/java/io/seqware/pancancer/CgpCnIndelSnvStrWorkflow.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:ICGC-TCGA-PanCancer-SeqWare-CGP-SomaticCore_f79617_778503src/main/java/io/seqware/pancancer/CgpCnIndelSnvStrWorkflow.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:IDPF-epubcheck_376a72_823917src/main/java/com/adobe/epubcheck/ocf/OCFPackage.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:IDPF-epubcheck_820b19_a5c54asrc/main/java/com/adobe/epubcheck/vocab/PackageVocabs.java:73:73:MS_SHOULD_BE_FINAL -#Null_Violation_Hunk:IDPF-epubcheck_820b19_a5c54asrc/main/java/com/adobe/epubcheck/vocab/PackageVocabs.java:48:48:MS_SHOULD_BE_FINAL -#Null_Violation_Hunk:IDPF-epubcheck_820b19_a5c54asrc/main/java/com/adobe/epubcheck/vocab/PackageVocabs.java:66:66:MS_SHOULD_BE_FINAL -#Null_Violation_Hunk:IDPF-epubcheck_820b19_a5c54asrc/main/java/com/adobe/epubcheck/vocab/PackageVocabs.java:76:76:MS_SHOULD_BE_FINAL -#Illegal_Line_Position:IDPF-epubcheck_bc31d4_fcbb96src/main/java/com/adobe/epubcheck/ocf/OCFPackage.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:imglib-imglib2_026267_bf06d4core/src/main/java/net/imglib2/multithreading/SimpleMultiThreading.java:169:169:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:imglib-imglib2_062cfb_75cfcealgorithms/core/src/main/java/net/imglib2/algorithm/componenttree/ComponentTree.java:144:149:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:imglib-imglib2_062cfb_75cfcealgorithms/core/src/main/java/net/imglib2/algorithm/componenttree/ComponentTree.java:131:136:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:imglib-imglib2_15fec0_2e6fb7algorithms/core/src/main/java/net/imglib2/algorithm/componenttree/ComponentTree.java:142:147:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:imglib-imglib2_15fec0_2e6fb7algorithms/core/src/main/java/net/imglib2/algorithm/componenttree/ComponentTree.java:130:135:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:imglib-imglib2_15fec0_2e6fb7core/src/main/java/net/imglib2/multithreading/SimpleMultiThreading.java:169:169:UC_USELESS_VOID_METHOD -#Illegal_Line_Position:imglib-imglib2_15fec0_2e6fb7core/src/main/java/net/imglib2/type/numeric/ARGBType.java:-1:-1:CI_CONFUSED_INHERITANCE -#Null_Violation_Hunk:imglib-imglib2_1f4761_aaf3ebcore/src/main/java/net/imglib2/multithreading/SimpleMultiThreading.java:169:169:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:imglib-imglib2_561a19_eeab2balgorithms/core/src/main/java/net/imglib2/algorithm/componenttree/ComponentTree.java:130:135:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:imglib-imglib2_561a19_eeab2balgorithms/core/src/main/java/net/imglib2/algorithm/componenttree/ComponentTree.java:142:147:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:imglib-imglib2_59c847_e06a1aalgorithms/core/src/main/java/net/imglib2/algorithm/componenttree/ComponentTree.java:131:136:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:imglib-imglib2_59c847_e06a1aalgorithms/core/src/main/java/net/imglib2/algorithm/componenttree/ComponentTree.java:144:149:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:imglib-imglib2_5dd86e_062cfbcore/src/main/java/net/imglib2/multithreading/SimpleMultiThreading.java:169:169:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:imglib-imglib2_7465b7_25fb52algorithms/core/src/main/java/net/imglib2/algorithm/componenttree/ComponentTree.java:130:135:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:imglib-imglib2_7465b7_25fb52algorithms/core/src/main/java/net/imglib2/algorithm/componenttree/ComponentTree.java:142:147:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Illegal_Line_Position:imglib-imglib2_772e25_65277bsrc/main/java/net/imglib2/type/numeric/integer/LongType.java:-1:-1:CI_CONFUSED_INHERITANCE -#Null_Violation_Hunk:imglib-imglib2_af91a5_c70ce9algorithms/core/src/main/java/net/imglib2/algorithm/componenttree/ComponentTree.java:142:147:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:imglib-imglib2_af91a5_c70ce9algorithms/core/src/main/java/net/imglib2/algorithm/componenttree/ComponentTree.java:130:135:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:imglib-imglib2_af91a5_c70ce9core/src/main/java/net/imglib2/multithreading/SimpleMultiThreading.java:169:169:UC_USELESS_VOID_METHOD -#Illegal_Line_Position:imglib-imglib2_af91a5_c70ce9core/src/main/java/net/imglib2/RandomAccessibleOnRealRandomAccessible.java:-1:-1:CI_CONFUSED_INHERITANCE -#Null_Violation_Hunk:imglib-imglib2_bdddbe_7c0b91algorithms/core/src/main/java/net/imglib2/algorithm/componenttree/ComponentTree.java:130:135:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:imglib-imglib2_bdddbe_7c0b91algorithms/core/src/main/java/net/imglib2/algorithm/componenttree/ComponentTree.java:142:147:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:imglib-imglib2_ee1ceb_bcfd24algorithms/core/src/main/java/net/imglib2/algorithm/componenttree/ComponentTree.java:142:147:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:imglib-imglib2_ee1ceb_bcfd24algorithms/core/src/main/java/net/imglib2/algorithm/componenttree/ComponentTree.java:130:135:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Illegal_Line_Position:imglib-imglib2_eeab2b_1fb58ccore/src/main/java/net/imglib2/converter/read/ConvertedRandomAccess.java:-1:-1:CI_CONFUSED_INHERITANCE -#Illegal_Line_Position:imglib-imglib2_eeab2b_1fb58ccore/src/main/java/net/imglib2/ExtendedRandomAccessibleInterval.java:-1:-1:CI_CONFUSED_INHERITANCE -#Null_Violation_Hunk:imglib-imglib2_eeab2b_1fb58ccore/src/main/java/net/imglib2/multithreading/SimpleMultiThreading.java:169:169:UC_USELESS_VOID_METHOD -#Illegal_Line_Position:ImmobilienScout24-deadcode4j_ae3c49_2eef2esrc/main/java/de/is24/deadcode4j/plugin/UsageStatisticsManager.java:-1:-1:UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:immutables-immutables_18890a_c9c285generate/src/org/immutables/generate/internal/processing/TypeInstrospectionBase.java:90:90:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:immutables-immutables_72d7af_d1f244generate/src/org/immutables/generate/internal/processing/TypeIntrospectionBase.java:89:89:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:Incoding-apiTest_0e0883_d6f00csrc/com/javaapi/test/genericType/Generic/GenericMethod.java:34:34:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:Incoding-apiTest_ab3099_ba1846src/com/javaapi/test/testPath/TestPath.java:119:119:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:Incoding-apiTest_afe853_d8fce8src/com/javaapi/test/genericType/Generic/Generic4.java:26:26:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:Incoding-apiTest_afe853_d8fce8src/com/javaapi/test/genericType/Generic/Generic5_Super.java:11:11:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:Incoding-apiTest_c0b81e_0e0883src/com/javaapi/test/genericType/Generic/Generic2.java:30:30:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:INL-BlackLab_4e40fe_621b78src/main/java/nl/inl/blacklab/search/lucene/BLSpanOrQuery.java:161:174:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:INL-BlackLab_962bd0_897d9bsrc/main/java/nl/inl/blacklab/perdocument/DocResults.java:-1:-1:UWF_NULL_FIELD -#Null_Violation_Hunk:instance01-MinigamesAPI_51a520_b9a5b7API/src/main/java/com/comze_instancelabs/minigamesapi/achievements/ArenaAchievements.java:41:41:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:instance01-MinigamesAPI_5f3d72_a4f312API/src/main/java/com/comze_instancelabs/minigamesapi/util/IconMenu.java:111:149:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:instance01-MinigamesAPI_7909ad_a7d507API/src/main/java/com/comze_instancelabs/minigamesapi/util/ArenaBlock.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:instance01-MinigamesAPI_924750_1cbc56API/src/com/comze_instancelabs/minigamesapi/sql/MySQL.java:51:51:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:instance01-MinigamesAPI_924750_1cbc56API/src/com/comze_instancelabs/minigamesapi/sql/SQLite.java:47:47:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:instance01-MinigamesAPI_c07f68_3b23f0API/src/main/java/com/comze_instancelabs/minigamesapi/sql/MySQL.java:51:51:UC_USELESS_VOID_METHOD -#Illegal_Line_Position:instance01-MinigamesAPI_e2920f_991e47API/src/main/java/com/comze_instancelabs/minigamesapi/PluginInstance.java:-1:-1:UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:irstv-orbisgis_d93325_4239eabundles/table-editor/src/main/java/org/orbisgis/tablegui/impl/ActionAddRow.java:80:80:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:jahlborn-jackcess_01c8f3_1c3fffsrc/java/com/healthmarketscience/jackcess/Cursor.java:478:478:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:jahlborn-jackcess_01c8f3_1c3fffsrc/java/com/healthmarketscience/jackcess/Cursor.java:472:472:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:jahlborn-jackcess_181185_a384c7src/java/com/healthmarketscience/jackcess/IndexPageCache.java:131:131:UC_USELESS_VOID_METHOD -#Illegal_Line_Position:jahlborn-jackcess_324f49_2e5d00src/main/java/com/healthmarketscience/jackcess/impl/RowImpl.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:jahlborn-jackcess_5d47ae_3bbc8asrc/java/com/healthmarketscience/jackcess/Index.java:1222:1222:EQ_COMPARETO_USE_OBJECT_EQUALS -#Null_Violation_Hunk:jahlborn-jackcess_5d47ae_3bbc8asrc/java/com/healthmarketscience/jackcess/Index.java:1159:1159:EQ_COMPARETO_USE_OBJECT_EQUALS -#Null_Violation_Hunk:jahlborn-jackcess_5d47ae_3bbc8asrc/java/com/healthmarketscience/jackcess/Index.java:1321:1321:EQ_COMPARETO_USE_OBJECT_EQUALS -#Null_Violation_Hunk:jahlborn-jackcess_651986_eaccccsrc/java/com/healthmarketscience/jackcess/complex/AttachmentColumnInfo.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:jahlborn-jackcess_651986_eaccccsrc/java/com/healthmarketscience/jackcess/complex/MultiValueColumnInfo.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:jahlborn-jackcess_651986_eaccccsrc/java/com/healthmarketscience/jackcess/complex/UnsupportedColumnInfo.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:jahlborn-jackcess_651986_eaccccsrc/java/com/healthmarketscience/jackcess/complex/VersionHistoryColumnInfo.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:jahlborn-jackcess_a92600_c3ca22src/java/com/healthmarketscience/jackcess/Index.java:972:972:EQ_COMPARETO_USE_OBJECT_EQUALS -#Null_Violation_Hunk:jahlborn-jackcess_a92600_c3ca22src/java/com/healthmarketscience/jackcess/Index.java:1034:1034:EQ_COMPARETO_USE_OBJECT_EQUALS -#Null_Violation_Hunk:jahlborn-jackcess_a92600_c3ca22src/java/com/healthmarketscience/jackcess/Index.java:1140:1140:EQ_COMPARETO_USE_OBJECT_EQUALS -#Null_Violation_Hunk:jahlborn-jackcess_b6276a_a4aaebsrc/java/com/healthmarketscience/jackcess/Index.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Illegal_Line_Position:jahlborn-jackcess_cf6233_012405src/java/com/healthmarketscience/jackcess/complex/ComplexValueForeignKey.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:jahlborn-jackcess_d40e7e_d14cd3src/java/com/healthmarketscience/jackcess/Index.java:901:901:EQ_COMPARETO_USE_OBJECT_EQUALS -#Null_Violation_Hunk:jahlborn-jackcess_d40e7e_d14cd3src/java/com/healthmarketscience/jackcess/Index.java:1007:1007:EQ_COMPARETO_USE_OBJECT_EQUALS -#Illegal_Line_Position:jamesagnew-hapi-fhir_5296e8_d09755hapi-fhir-base/src/main/java/ca/uhn/fhir/context/RuntimeChildResourceDefinition.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:jamesagnew-hapi-fhir_69461e_ad05d8hapi-fhir-base/src/main/java/ca/uhn/fhir/model/dstu/resource/ListResource.java:231:809:RI_REDUNDANT_INTERFACES -#Illegal_Line_Position:jankotek-MapDB_05f432_1c9bf3src/main/java/org/mapdb/ByteBuffer2.java:-1:-1:CI_CONFUSED_INHERITANCE -#Null_Violation_Hunk:jankotek-MapDB_0a513e_24bd04src/main/java/org/mapdb/CacheHashTable.java:40:47:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:jankotek-MapDB_10648b_65abcesrc/main/java/org/mapdb/CacheHashTable.java:17:24:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:jankotek-MapDB_15dd22_fb0d3fsrc/main/java/org/mapdb/SerializerPojo.java:703:737:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:jankotek-MapDB_2c21b0_e89ed0src/main/java/org/mapdb/Volume.java:1989:1989:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:jankotek-MapDB_2d128e_894532src/main/java/org/mapdb/SerializerPojo.java:634:660:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:jankotek-MapDB_2e5587_636544src/main/java/org/mapdb/CompressLZF.java:355:372:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:jankotek-MapDB_2f0ab9_130881src/main/java/org/mapdb/Serializer.java:202:220:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:jankotek-MapDB_352db1_7e1055src/main/java/org/mapdb/SerializerBase.java:1227:1297:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:jankotek-MapDB_59881f_0dbc5esrc/main/java/org/mapdb20/SerializerPojo.java:703:737:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:jankotek-MapDB_5cbae4_ab1c6esrc/main/java/org/mapdb/Volume.java:-1:-1:CI_CONFUSED_INHERITANCE -#Null_Violation_Hunk:jankotek-MapDB_669534_fa6141src/main/java/org/mapdb/Atomic.java:248:408:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:jankotek-MapDB_669534_fa6141src/main/java/org/mapdb/Atomic.java:428:589:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:jankotek-MapDB_669534_fa6141src/main/java/org/mapdb/Fun.java:63:107:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:jankotek-MapDB_669534_fa6141src/main/java/org/mapdb/Fun.java:116:175:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:jankotek-MapDB_669534_fa6141src/main/java/org/mapdb/Fun.java:185:256:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:jankotek-MapDB_669534_fa6141src/main/java/org/mapdb/SerializerPojo.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:jankotek-MapDB_69c85c_f748cdsrc/main/java/org/mapdb/SerializerBase.java:34:35:NM_CLASS_NAMING_CONVENTION -#Illegal_Line_Position:jankotek-MapDB_716dbc_64f801src/main/java/org/mapdb/BTreeKeySerializer.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:jankotek-MapDB_716dbc_64f801src/main/java/org/mapdb/BTreeKeySerializer.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:jankotek-MapDB_716dbc_64f801src/main/java/org/mapdb/BTreeKeySerializer.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:jankotek-MapDB_716dbc_64f801src/main/java/org/mapdb/BTreeKeySerializer.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:jankotek-MapDB_716dbc_64f801src/main/java/org/mapdb/BTreeKeySerializer.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:jankotek-MapDB_716dbc_64f801src/main/java/org/mapdb/BTreeKeySerializer.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:jankotek-MapDB_716dbc_64f801src/main/java/org/mapdb/Fun.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:jankotek-MapDB_716dbc_64f801src/main/java/org/mapdb/Fun.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:jankotek-MapDB_716dbc_64f801src/main/java/org/mapdb/Fun.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:jankotek-MapDB_716dbc_64f801src/main/java/org/mapdb/Fun.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:jankotek-MapDB_7b86b1_435c83src/main/java/org/mapdb/CacheHashTable.java:40:47:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:jankotek-MapDB_8dee37_dacbbfsrc/main/java/org/mapdb/BTreeKeySerializer.java:-1:-1:CI_CONFUSED_INHERITANCE -#Illegal_Line_Position:jankotek-MapDB_8dee37_dacbbfsrc/main/java/org/mapdb/BTreeKeySerializer.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:jankotek-MapDB_8dee37_dacbbfsrc/main/java/org/mapdb/BTreeKeySerializer.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:jankotek-MapDB_8dee37_dacbbfsrc/main/java/org/mapdb/BTreeKeySerializer.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:jankotek-MapDB_8dee37_dacbbfsrc/main/java/org/mapdb/BTreeMap.java:-1:-1:CI_CONFUSED_INHERITANCE -#Illegal_Line_Position:jankotek-MapDB_8dee37_dacbbfsrc/main/java/org/mapdb/BTreeMap.java:-1:-1:CI_CONFUSED_INHERITANCE -#Illegal_Line_Position:jankotek-MapDB_8dee37_dacbbfsrc/main/java/org/mapdb/Fun.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:jankotek-MapDB_8dee37_dacbbfsrc/main/java/org/mapdb/Fun.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:jankotek-MapDB_8dee37_dacbbfsrc/main/java/org/mapdb/Fun.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:jankotek-MapDB_8dee37_dacbbfsrc/main/java/org/mapdb/Fun.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:jankotek-MapDB_8dee37_dacbbfsrc/main/java/org/mapdb/Fun.java:-1:-1:CI_CONFUSED_INHERITANCE -#Illegal_Line_Position:jankotek-MapDB_99b619_bde4a9src/main/java/org/mapdb/DB.java:-1:-1:UWF_NULL_FIELD -#Null_Violation_Hunk:jankotek-MapDB_9a227f_16ad38src/main/java/org/mapdb/BTreeKeySerializer.java:56:79:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:jankotek-MapDB_a15a7a_4a0f83src/main/java/org/mapdb/BTreeKeySerializer.java:66:94:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:jankotek-MapDB_a15a7a_4a0f83src/main/java/org/mapdb/Fun.java:560:618:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:jankotek-MapDB_a15a7a_4a0f83src/main/java/org/mapdb/Fun.java:415:455:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:jankotek-MapDB_a15a7a_4a0f83src/main/java/org/mapdb/Fun.java:622:686:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:jankotek-MapDB_a15a7a_4a0f83src/main/java/org/mapdb/Fun.java:506:555:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:jankotek-MapDB_a15a7a_4a0f83src/main/java/org/mapdb/Fun.java:459:502:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:jankotek-MapDB_a302a8_dbe4fesrc/main/java/org/mapdb/StoreDirect.java:-1:-1:UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD -#Illegal_Line_Position:jankotek-MapDB_a302a8_dbe4fesrc/main/java/org/mapdb/StoreWAL.java:-1:-1:MF_CLASS_MASKS_FIELD -#Null_Violation_Hunk:jankotek-MapDB_b3b8b4_6563f5src/main/java/org/mapdb20/Volume.java:1576:1576:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:jankotek-MapDB_c71a2a_461ee2src/main/java/org/mapdb/Fun.java:236:251:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:jankotek-MapDB_c71a2a_461ee2src/main/java/org/mapdb/Fun.java:277:299:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:jankotek-MapDB_c8c6e8_b08c06src/main/java/org/mapdb/Serializer.java:1440:1510:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:jankotek-MapDB_cb1f65_be0f1asrc/main/java/org/mapdb/SerializerPojo.java:628:654:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:jankotek-MapDB_f4c4a0_e7bc8bsrc/main/java/org/mapdb/AsyncWriteEngine.java:-1:-1:HE_SIGNATURE_DECLARES_HASHING_OF_UNHASHABLE_CLASS -#Null_Violation_Hunk:jankotek-MapDB_feb207_6f28fbsrc/main/java/org/mapdb/SerializerPojo.java:628:654:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:jboss-javassist-javassist_962a75_b66787src/main/javassist/bytecode/stackmap/TypeData.java:392:392:HE_EQUALS_USE_HASHCODE -#Null_Violation_Hunk:jboss-javassist-javassist_962a75_b66787src/main/javassist/bytecode/stackmap/TypeData.java:323:323:HE_EQUALS_USE_HASHCODE -#Null_Violation_Hunk:jbossas-jboss-ejb-client_0facc1_a87bffsrc/main/java/org/jboss/ejb/client/remoting/GeneralInvocationFailureResponseHandler.java:97:109:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:jbossas-jboss-ejb-client_119bc7_f59701src/main/java/org/jboss/ejb/client/EJBInvocationHandler.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:jbossas-jboss-ejb-client_2f4178_c8fa49src/main/java/org/jboss/ejb/client/remoting/ClusterNode.java:155:166:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:jbossas-jboss-ejb-client_39af42_0398b3src/main/java/org/jboss/ejb/client/EJBClient.java:161:161:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:jbossas-jboss-ejb-client_39af42_0398b3src/test/java/org/jboss/ejb/client/test/proxy/EchoBean.java:32:37:NM_SAME_SIMPLE_NAME_AS_INTERFACE -#Null_Violation_Hunk:jbossas-jboss-ejb-client_a60c5a_d339a2src/main/java/org/jboss/ejb/client/remoting/ModuleAvailabilityMessageHandler.java:110:143:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:jbossas-jboss-ejb-client_a6666e_543515src/main/java/org/jboss/ejb/client/remoting/ModuleAvailabilityMessageHandler.java:110:143:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:jbossas-jboss-ejb-client_c43392_b1b8d4src/main/java/org/jboss/ejb/client/remoting/ClusterNode.java:155:166:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:jbossas-jboss-ejb-client_c9d67f_e4fd05src/main/java/org/jboss/ejb/client/remoting/GeneralInvocationFailureResponseHandler.java:97:109:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:jbossas-jboss-ejb-client_e4e2f5_35504csrc/main/java/org/jboss/ejb/client/RecoveryOnlySerializedEJBXAResource.java:42:137:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:jbossas-jboss-ejb-client_f754b5_4e276csrc/main/java/org/jboss/ejb/client/SessionInterceptor.java:43:43:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:jcabi-jcabi-github_1cfc4d_a7d703src/main/java/com/jcabi/github/RtOrganization.java:48:48:EQ_COMPARETO_USE_OBJECT_EQUALS -#Null_Violation_Hunk:jcabi-jcabi-github_47050c_1dcb5fsrc/main/java/com/jcabi/github/RtOrganization.java:48:48:EQ_COMPARETO_USE_OBJECT_EQUALS -#Null_Violation_Hunk:jcabi-jcabi-github_55d31d_8f76d5src/main/java/com/jcabi/github/RtOrganization.java:48:48:EQ_COMPARETO_USE_OBJECT_EQUALS -#Null_Violation_Hunk:jcabi-jcabi-github_75d449_c4724dsrc/main/java/com/jcabi/github/RtOrganization.java:48:48:EQ_COMPARETO_USE_OBJECT_EQUALS -#Null_Violation_Hunk:jcabi-jcabi-github_7721b1_be9f87src/main/java/com/jcabi/github/RtOrganization.java:48:48:EQ_COMPARETO_USE_OBJECT_EQUALS -#Null_Violation_Hunk:jcabi-jcabi-github_8707c4_be49edsrc/main/java/com/jcabi/github/RtOrganization.java:48:48:EQ_COMPARETO_USE_OBJECT_EQUALS -#Null_Violation_Hunk:jcabi-jcabi-github_91a5ed_dd6b62src/main/java/com/jcabi/github/RtOrganization.java:48:48:EQ_COMPARETO_USE_OBJECT_EQUALS -#Null_Violation_Hunk:jcabi-jcabi-github_af0de5_07aa91src/main/java/com/jcabi/github/RtOrganization.java:48:48:EQ_COMPARETO_USE_OBJECT_EQUALS -#Null_Violation_Hunk:jcabi-jcabi-github_b6a619_733132src/main/java/com/jcabi/github/RtOrganization.java:48:48:EQ_COMPARETO_USE_OBJECT_EQUALS -#Null_Violation_Hunk:jcabi-jcabi-github_b6e0ea_8e1b84src/main/java/com/jcabi/github/RtOrganization.java:48:48:EQ_COMPARETO_USE_OBJECT_EQUALS -#Null_Violation_Hunk:jcabi-jcabi-github_cc75c4_e85dffsrc/main/java/com/jcabi/github/RtOrganization.java:48:48:EQ_COMPARETO_USE_OBJECT_EQUALS -#Null_Violation_Hunk:jcabi-jcabi-github_dd0d77_4563a6src/main/java/com/jcabi/github/RtStatuses.java:47:47:EQ_COMPARETO_USE_OBJECT_EQUALS -#Null_Violation_Hunk:jcabi-jcabi-github_de398c_ee340csrc/main/java/com/jcabi/github/RtOrganization.java:48:48:EQ_COMPARETO_USE_OBJECT_EQUALS -#Null_Violation_Hunk:jcabi-jcabi-github_fdf5d6_258801src/main/java/com/jcabi/github/RtOrganization.java:48:48:EQ_COMPARETO_USE_OBJECT_EQUALS -#Null_Violation_Hunk:jenkinsci-acceptance-test-harness_a1fafd_edd3a9src/main/java/org/jenkinsci/test/acceptance/po/WorkflowJob.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:jenkinsci-git-client-plugin_00d987_890c85src/main/java/org/jenkinsci/plugins/gitclient/JGitProgressMonitor.java:15:34:NM_SAME_SIMPLE_NAME_AS_INTERFACE -#Null_Violation_Hunk:jenkinsci-git-client-plugin_12d541_d6945fsrc/main/java/org/jenkinsci/plugins/gitclient/JGitProgressMonitor.java:15:34:NM_SAME_SIMPLE_NAME_AS_INTERFACE -#Illegal_Line_Position:jenkinsci-git-client-plugin_1770d8_8bf0f4src/main/java/org/jenkinsci/plugins/gitclient/JGitAPIImpl.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:jenkinsci-git-client-plugin_177334_eee5b5src/main/java/org/jenkinsci/plugins/gitclient/CliGitAPIImpl.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:jenkinsci-git-client-plugin_41c401_c0647esrc/main/java/org/jenkinsci/plugins/gitclient/JGitAPIImpl.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:jenkinsci-git-client-plugin_4ba836_f5f1fesrc/main/java/org/jenkinsci/plugins/gitclient/JGitAPIImpl.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:jenkinsci-git-client-plugin_5e816b_f759bcsrc/main/java/org/jenkinsci/plugins/gitclient/CliGitAPIImpl.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:jenkinsci-git-client-plugin_5e816b_f759bcsrc/main/java/org/jenkinsci/plugins/gitclient/JGitAPIImpl.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:jenkinsci-git-client-plugin_7fd8d1_8ffb0esrc/main/java/org/jenkinsci/plugins/gitclient/JGitAPIImpl.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:jenkinsci-git-client-plugin_a34d1a_38d33bsrc/main/java/org/jenkinsci/plugins/gitclient/RemoteGitImpl.java:105:160:SE_INNER_CLASS -#Null_Violation_Hunk:jenkinsci-git-client-plugin_ab79be_6ae1cesrc/main/java/org/jenkinsci/plugins/gitclient/JGitProgressMonitor.java:15:34:NM_SAME_SIMPLE_NAME_AS_INTERFACE -#Illegal_Line_Position:jenkinsci-git-client-plugin_c1c0e5_2d41edsrc/main/java/org/jenkinsci/plugins/gitclient/JGitAPIImpl.java:-1:-1:UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:jenkinsci-git-client-plugin_e7797a_fdcac5src/main/java/org/jenkinsci/plugins/gitclient/JGitProgressMonitor.java:15:34:NM_SAME_SIMPLE_NAME_AS_INTERFACE -#Null_Violation_Hunk:jenkinsci-git-client-plugin_fe7f56_41c401src/main/java/org/jenkinsci/plugins/gitclient/JGitTool.java:16:29:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:jenkinsci-junit-plugin_520cba_905451src/main/java/hudson/tasks/junit/TestResultAction.java:56:56:UG_SYNC_SET_UNSYNC_GET -#Null_Violation_Hunk:jenkinsci-matrix-project-plugin_eb81a1_79ff52src/main/java/hudson/matrix/NoopMatrixConfigurationSorter.java:12:23:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:jenkinsci-remoting_846b3e_94ce96src/main/java/hudson/remoting/JarLoaderImpl.java:86:97:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:jenkinsci-remoting_ba844a_075098src/main/java/hudson/remoting/JarLoaderImpl.java:86:97:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:jenkinsci-remoting_c6432e_845151src/main/java/hudson/remoting/ResourceImageDirect.java:22:37:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:jenkinsci-remoting_d9c57f_0e4d75src/main/java/hudson/remoting/JarLoaderImpl.java:86:97:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:jenkinsci-sauce-ondemand-plugin_b4c29e_c2f5f2src/main/java/hudson/plugins/sauce_ondemand/SauceOnDemandReport.java:99:108:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:jenkinsci-sauce-ondemand-plugin_b8fb33_c5ad3bsrc/main/java/hudson/plugins/sauce_ondemand/AbstractAction.java:65:77:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:jenkinsci-sauce-ondemand-plugin_c66742_c7c09esrc/main/java/hudson/plugins/sauce_ondemand/SauceOnDemandBuildAction.java:201:225:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:jenkinsci-xunit-plugin_955eef_3634ffsrc/main/java/org/jenkinsci/plugins/xunit/XUnitPublisher.java:204:204:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:jenkinsci-xunit-plugin_9a7e11_ab2562src/main/java/org/jenkinsci/plugins/xunit/XUnitProcessor.java:142:142:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:jenkinsci-xunit-plugin_cfcbac_382868src/main/java/org/jenkinsci/plugins/xunit/XUnitPublisher.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:JensBee-QueryClarity_053a02_3a4f33src/main/java/de/unihildesheim/iw/lucene/index/TestIndexDataProvider.java:-1:-1:MS_PKGPROTECT -#Illegal_Line_Position:JensBee-QueryClarity_053a02_3a4f33src/main/java/de/unihildesheim/iw/lucene/index/TestIndexDataProvider.java:-1:-1:CI_CONFUSED_INHERITANCE -#Null_Violation_Hunk:JensBee-QueryClarity_053a02_3a4f33src/main/java/de/unihildesheim/iw/lucene/index/TestIndexDataProvider.java:851:1052:SIC_INNER_SHOULD_BE_STATIC 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-#Illegal_Line_Position:kohsuke-github-api_2d45ac_ec450bsrc/main/java/org/kohsuke/github/GHThread.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:kohsuke-github-api_2d45ac_ec450bsrc/main/java/org/kohsuke/github/SearchResult.java:27:27:UWF_UNWRITTEN_FIELD -#Null_Violation_Hunk:kohsuke-github-api_2d45ac_ec450bsrc/main/java/org/kohsuke/github/SearchResult.java:32:32:UWF_UNWRITTEN_FIELD -#Illegal_Line_Position:kohsuke-github-api_340fb3_202cffsrc/main/java/org/kohsuke/github/GHIssueComment.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:kohsuke-github-api_5159a2_e66536src/main/java/org/kohsuke/github/GHOrganization.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:kohsuke-github-api_5a418d_340fb3src/main/java/org/kohsuke/github/GHAuthorization.java:99:99:UWF_UNWRITTEN_FIELD -#Null_Violation_Hunk:kohsuke-github-api_aad20d_b736e2src/main/java/org/kohsuke/github/GHObject.java:52:52:UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:kohsuke-github-api_b736e2_d070f9src/main/java/org/kohsuke/github/GHAuthorization.java:91:91:UWF_UNWRITTEN_FIELD -#Illegal_Line_Position:kohsuke-github-api_e239ef_4660c6src/main/java/org/kohsuke/github/GHIssueComment.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:kohsuke-github-api_ebc97f_79c5b2src/main/java/org/kohsuke/github/DeleteToken.java:-1:-1:UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:kohsuke-github-api_ebc97f_79c5b2src/main/java/org/kohsuke/github/GHAuthorization.java:88:88:UWF_UNWRITTEN_FIELD -#Illegal_Line_Position:kohsuke-github-api_ebc97f_79c5b2src/main/java/org/kohsuke/github/GHBranch.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:kohsuke-github-api_ebc97f_79c5b2src/main/java/org/kohsuke/github/GHCommit.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:kohsuke-github-api_ebc97f_79c5b2src/main/java/org/kohsuke/github/GHCommit.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:kohsuke-github-api_ebc97f_79c5b2src/main/java/org/kohsuke/github/GHCommitComment.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:kohsuke-github-api_ebc97f_79c5b2src/main/java/org/kohsuke/github/GHEventInfo.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:kohsuke-github-api_ebc97f_79c5b2src/main/java/org/kohsuke/github/GHEventInfo.java:30:30:UWF_UNWRITTEN_FIELD -#Null_Violation_Hunk:kohsuke-github-api_ebc97f_79c5b2src/main/java/org/kohsuke/github/GHPersonSet.java:13:39:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:kohsuke-github-api_ebc97f_79c5b2src/main/java/org/kohsuke/github/GHPullRequestCommitDetail.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:kohsuke-github-api_ebc97f_79c5b2src/main/java/org/kohsuke/github/GHRepository.java:-1:-1:DMI_COLLECTION_OF_URLS -#Null_Violation_Hunk:kohsuke-github-api_ebc97f_79c5b2src/main/java/org/kohsuke/github/GHRepository.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Illegal_Line_Position:kohsuke-github-api_ebc97f_79c5b2src/main/java/org/kohsuke/github/GHThread.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:kohsuke-github-api_ebc97f_79c5b2src/main/java/org/kohsuke/github/SearchResult.java:27:27:UWF_UNWRITTEN_FIELD -#Null_Violation_Hunk:kohsuke-github-api_ebc97f_79c5b2src/main/java/org/kohsuke/github/SearchResult.java:32:32:UWF_UNWRITTEN_FIELD -#Null_Violation_Hunk:korpling-ANNIS_1ae44a_de792bannis-libgui/src/main/java/annis/libgui/ResolverProviderImpl.java:141:161:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:korpling-ANNIS_275edb_dde724annis-libgui/src/main/java/annis/libgui/ResolverProviderImpl.java:141:161:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:korpling-ANNIS_43e0d0_5ed60aannis-libgui/src/main/java/annis/libgui/ResolverProviderImpl.java:141:161:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:korpling-ANNIS_4ed705_100fd9annis-libgui/src/main/java/annis/libgui/ResolverProviderImpl.java:141:161:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:korpling-ANNIS_6933c5_241796annis-libgui/src/main/java/annis/libgui/AnnisBaseUI.java:496:505:SE_INNER_CLASS -#Null_Violation_Hunk:korpling-ANNIS_73c890_0f56bfannis-libgui/src/main/java/annis/libgui/ResolverProviderImpl.java:140:160:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:korpling-ANNIS_a16b70_16327dannis-libgui/src/main/java/annis/libgui/AnnisBaseUI.java:462:471:SE_INNER_CLASS -#Null_Violation_Hunk:korpling-ANNIS_d7c374_701d43annis-libgui/src/main/java/annis/libgui/ResolverProviderImpl.java:141:161:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:korpling-ANNIS_fb1c6c_0f56bfannis-libgui/src/main/java/annis/libgui/ResolverProviderImpl.java:141:161:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:kotcrab-VisEditor_38fd11_2c6ed3src/pl/kotcrab/vis/sceneeditor/EditorState.java:69:69:UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD -#Illegal_Line_Position:kotcrab-VisEditor_38fd11_2c6ed3src/pl/kotcrab/vis/sceneeditor/SceneEditorConfig.java:-1:-1:MS_PKGPROTECT -#Illegal_Line_Position:kotcrab-VisEditor_94e9c9_d892d3src/main/java/pl/kotcrab/vis/sceneeditor/SceneEditorConfig.java:-1:-1:MS_SHOULD_BE_FINAL -#Null_Violation_Hunk:kotcrab-VisEditor_94e9c9_d892d3src/main/java/pl/kotcrab/vis/sceneeditor/SceneEditorConfig.java:99:99:UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD -#Illegal_Line_Position:kotcrab-VisEditor_bf1217_79455asrc/main/java/pl/kotcrab/vis/sceneeditor/SceneEditorConfig.java:-1:-1:UWF_NULL_FIELD -#Illegal_Line_Position:kotcrab-VisEditor_c2157c_d8a88csrc/main/java/pl/kotcrab/vis/sceneeditor/SceneEditorConfig.java:-1:-1:MS_CANNOT_BE_FINAL -#Illegal_Line_Position:kotcrab-VisEditor_d8a88c_38fd11src/pl/kotcrab/vis/sceneeditor/SceneEditorConfig.java:-1:-1:MS_CANNOT_BE_FINAL -#Null_Violation_Hunk:kuujo-copycat_e889d6_5d908esrc/main/java/net/kuujo/mimeo/state/StateContext.java:142:142:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:kuujo-vertigo_aafc57_6432e1src/main/java/net/kuujo/vertigo/cluster/AbstractCluster.java:33:33:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ldbc-ldbc_driver_0dcf0c_6a396esrc/main/java/com/ldbc/driver/workloads/ldbc/snb/interactive/LdbcSnbShortReadGenerator.java:599:615:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ldbc-ldbc_driver_0dcf0c_6a396esrc/main/java/com/ldbc/driver/workloads/ldbc/snb/interactive/LdbcSnbShortReadGenerator.java:699:715:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ldbc-ldbc_driver_0dcf0c_6a396esrc/main/java/com/ldbc/driver/workloads/ldbc/snb/interactive/LdbcSnbShortReadGenerator.java:639:655:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ldbc-ldbc_driver_0dcf0c_6a396esrc/main/java/com/ldbc/driver/workloads/ldbc/snb/interactive/LdbcSnbShortReadGenerator.java:659:675:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ldbc-ldbc_driver_0dcf0c_6a396esrc/main/java/com/ldbc/driver/workloads/ldbc/snb/interactive/LdbcSnbShortReadGenerator.java:619:635:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ldbc-ldbc_driver_0dcf0c_6a396esrc/main/java/com/ldbc/driver/workloads/ldbc/snb/interactive/LdbcSnbShortReadGenerator.java:579:595:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ldbc-ldbc_driver_0dcf0c_6a396esrc/main/java/com/ldbc/driver/workloads/ldbc/snb/interactive/LdbcSnbShortReadGenerator.java:679:695:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ldbc-ldbc_driver_26a25f_ec8b7dsrc/main/java/com/ldbc/driver/util/MapUtils.java:36:42:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Illegal_Line_Position:ldbc-ldbc_driver_26a25f_ec8b7dsrc/main/java/com/ldbc/driver/workloads/ldbc/snb/bi/LdbcSnbBiWorkload.java:-1:-1:UWF_NULL_FIELD -#Null_Violation_Hunk:ldbc-ldbc_driver_2c1146_825735src/main/java/com/ldbc/driver/runtime/executor/UniformWindowedOperationStreamExecutorServiceThread.java:253:263:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ldbc-ldbc_driver_2c1146_825735src/main/java/com/ldbc/driver/runtime/executor/UniformWindowedOperationStreamExecutorServiceThread.java:226:249:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ldbc-ldbc_driver_35c2ab_0cd4b4src/main/java/com/ldbc/driver/runtime/executor/UniformWindowedOperationStreamExecutorServiceThread.java:253:263:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ldbc-ldbc_driver_35c2ab_0cd4b4src/main/java/com/ldbc/driver/runtime/executor/UniformWindowedOperationStreamExecutorServiceThread.java:226:249:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ldbc-ldbc_driver_544b44_60eeb5src/main/java/com/ldbc/driver/util/MapUtils.java:38:44:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:ldbc-ldbc_driver_60eeb5_fbe28fsrc/main/java/com/ldbc/driver/runtime/metrics/ThreadedQueuedMetricsService.java:261:261:UG_SYNC_SET_UNSYNC_GET -#Null_Violation_Hunk:ldbc-ldbc_driver_60eeb5_fbe28fsrc/main/java/com/ldbc/driver/runtime/metrics/ThreadedQueuedMetricsService.java:209:209:UG_SYNC_SET_UNSYNC_GET -#Null_Violation_Hunk:ldbc-ldbc_driver_60eeb5_fbe28fsrc/main/java/com/ldbc/driver/runtime/WorkloadStatusThread.java:142:159:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ldbc-ldbc_driver_617a9b_0c9a62src/main/java/com/ldbc/driver/runtime/executor/PreciseIndividualAsyncOperationStreamExecutorServiceThread.java:140:150:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ldbc-ldbc_driver_648f85_56c5f7src/main/java/com/ldbc/driver/runtime/executor/UniformWindowedOperationStreamExecutorServiceThread.java:253:263:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ldbc-ldbc_driver_648f85_56c5f7src/main/java/com/ldbc/driver/runtime/executor/UniformWindowedOperationStreamExecutorServiceThread.java:226:249:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:ldbc-ldbc_driver_920ee2_56b0d6src/main/java/com/ldbc/driver/runtime/executor/InitiatedTimeSubmittingOperationRetriever_NEW.java:-1:-1:UWF_NULL_FIELD -#Null_Violation_Hunk:ldbc-ldbc_driver_95c1f6_4a1f2esrc/main/java/com/ldbc/driver/util/MapUtils.java:38:44:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:ldbc-ldbc_driver_9a4058_81feb7src/main/java/com/ldbc/driver/runtime/WorkloadStatusThread.java:133:147:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ldbc-ldbc_driver_9a6d4f_04dbf2src/main/java/com/ldbc/driver/workloads/ldbc/snb/interactive/LdbcSnbShortReadGenerator.java:259:262:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ldbc-ldbc_driver_9a6d4f_04dbf2src/main/java/com/ldbc/driver/workloads/ldbc/snb/interactive/LdbcSnbShortReadGenerator.java:294:297:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ldbc-ldbc_driver_9a6d4f_04dbf2src/main/java/com/ldbc/driver/workloads/ldbc/snb/interactive/LdbcSnbShortReadGenerator.java:266:269:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ldbc-ldbc_driver_9a6d4f_04dbf2src/main/java/com/ldbc/driver/workloads/ldbc/snb/interactive/LdbcSnbShortReadGenerator.java:273:276:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ldbc-ldbc_driver_9a6d4f_04dbf2src/main/java/com/ldbc/driver/workloads/ldbc/snb/interactive/LdbcSnbShortReadGenerator.java:280:283:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ldbc-ldbc_driver_9a6d4f_04dbf2src/main/java/com/ldbc/driver/workloads/ldbc/snb/interactive/LdbcSnbShortReadGenerator.java:252:255:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ldbc-ldbc_driver_9a6d4f_04dbf2src/main/java/com/ldbc/driver/workloads/ldbc/snb/interactive/LdbcSnbShortReadGenerator.java:287:290:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ldbc-ldbc_driver_a0add3_f8dc48src/main/java/com/ldbc/driver/runtime/WorkloadStatusThread.java:134:148:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ldbc-ldbc_driver_c7e12d_2d1711src/main/java/com/ldbc/driver/workloads/ldbc/snb/interactive/db/DummyLdbcSnbInteractiveDb.java:137:142:SIC_INNER_SHOULD_BE_STATIC_ANON -#Null_Violation_Hunk:ldbc-ldbc_driver_cfebf3_b21851src/main/java/com/ldbc/driver/runtime/executor/UniformWindowedOperationStreamExecutorServiceThread.java:253:263:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ldbc-ldbc_driver_cfebf3_b21851src/main/java/com/ldbc/driver/runtime/executor/UniformWindowedOperationStreamExecutorServiceThread.java:226:249:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ldbc-ldbc_driver_e735a9_a0cfe6src/main/java/com/ldbc/driver/runtime/executor/UniformWindowedOperationStreamExecutorServiceThread.java:226:249:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ldbc-ldbc_driver_e735a9_a0cfe6src/main/java/com/ldbc/driver/runtime/executor/UniformWindowedOperationStreamExecutorServiceThread.java:253:263:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:ldbc-ldbc_driver_ec8b7d_79f318src/main/java/com/ldbc/driver/runtime/coordination/ThreadedQueuedCompletionTimeService.java:234:234:UG_SYNC_SET_UNSYNC_GET -#Null_Violation_Hunk:ldbc-ldbc_driver_ec8b7d_79f318src/main/java/com/ldbc/driver/runtime/coordination/ThreadedQueuedCompletionTimeService.java:181:181:UG_SYNC_SET_UNSYNC_GET -#Null_Violation_Hunk:ldbc-ldbc_driver_ec8b7d_79f318src/main/java/com/ldbc/driver/validation/DbValidationResult.java:214:220:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:LEDS-sincap-entities_2a3fbd_3024f8src/main/java/br/ifes/leds/sincap/gerenciaNotificacao/cln/cdp/relatorios/TotalDoacaoInstituicao.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Illegal_Line_Position:LEDS-sincap-entities_2a3fbd_3024f8src/main/java/br/ifes/leds/sincap/gerenciaNotificacao/cln/cgt/AplRelatorio.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:LEDS-sincap-entities_477e17_b18244src/main/java/br/ifes/leds/sincap/gerenciaNotificacao/cln/cdp/DTO/ProcessoNotificacaoDTO.java:-1:-1:NM_FIELD_NAMING_CONVENTION -#Illegal_Line_Position:LEDS-sincap-entities_4eb004_cd7ee4src/main/java/br/ifes/leds/sincap/gerenciaNotificacao/cln/util/dataFactory/PacienteData.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:LEDS-sincap-entities_4eb004_cd7ee4src/main/java/br/ifes/leds/sincap/gerenciaNotificacao/cln/util/dataFactory/ResponsavelData.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:LEDS-sincap-entities_6190c0_bed22csrc/main/java/br/ifes/leds/sincap/gerenciaNotificacao/cln/cdp/relatorios/TotalDoacaoInstituicao.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Illegal_Line_Position:LEDS-sincap-entities_687bf5_6fc7c2src/main/java/br/ifes/leds/sincap/gerenciaNotificacao/cln/util/dataFactory/CaptacaoData.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:LEDS-sincap-entities_687bf5_6fc7c2src/main/java/br/ifes/leds/sincap/gerenciaNotificacao/cln/util/dataFactory/ProcessoNotificacaoData.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:LEDS-sincap-entities_69e43e_8b9a01src/main/java/br/ifes/leds/sincap/controleInterno/cln/cdp/AnalistaCNCDO.java:22:22:HE_INHERITS_EQUALS_USE_HASHCODE -#Null_Violation_Hunk:LEDS-sincap-entities_69e43e_8b9a01src/main/java/br/ifes/leds/sincap/controleInterno/cln/cdp/AnalistaCNCDO.java:22:22:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:LEDS-sincap-entities_69e43e_8b9a01src/main/java/br/ifes/leds/sincap/controleInterno/cln/cdp/InstituicaoNotificadora.java:10:10:HE_INHERITS_EQUALS_USE_HASHCODE -#Null_Violation_Hunk:LEDS-sincap-entities_69e43e_8b9a01src/main/java/br/ifes/leds/sincap/controleInterno/cln/cdp/InstituicaoNotificadora.java:10:10:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:LEDS-sincap-entities_6adc1b_8dfb6csrc/main/java/br/ifes/leds/sincap/controleInterno/cln/cdp/AnalistaCNCDO.java:16:16:HE_INHERITS_EQUALS_USE_HASHCODE -#Null_Violation_Hunk:LEDS-sincap-entities_6adc1b_8dfb6csrc/main/java/br/ifes/leds/sincap/controleInterno/cln/cdp/AnalistaCNCDO.java:16:16:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:LEDS-sincap-entities_706d25_4570aasrc/main/java/br/ifes/leds/sincap/controleInterno/cln/cdp/AnalistaCNCDO.java:22:22:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:LEDS-sincap-entities_706d25_4570aasrc/main/java/br/ifes/leds/sincap/controleInterno/cln/cdp/AnalistaCNCDO.java:22:22:HE_INHERITS_EQUALS_USE_HASHCODE -#Null_Violation_Hunk:LEDS-sincap-entities_706d25_4570aasrc/main/java/br/ifes/leds/sincap/controleInterno/cln/cdp/InstituicaoNotificadora.java:10:10:HE_INHERITS_EQUALS_USE_HASHCODE -#Null_Violation_Hunk:LEDS-sincap-entities_706d25_4570aasrc/main/java/br/ifes/leds/sincap/controleInterno/cln/cdp/InstituicaoNotificadora.java:10:10:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:LEDS-sincap-entities_83a062_9977e8src/main/java/br/ifes/leds/sincap/controleInterno/cln/cdp/AnalistaCNCDO.java:21:21:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:LEDS-sincap-entities_83a062_9977e8src/main/java/br/ifes/leds/sincap/controleInterno/cln/cdp/AnalistaCNCDO.java:21:21:HE_INHERITS_EQUALS_USE_HASHCODE -#Illegal_Line_Position:LEDS-sincap-entities_8ba099_59fbbbsrc/main/java/br/ifes/leds/sincap/gerenciaNotificacao/cln/cdp/relatorios/ObitoCardio.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:LEDS-sincap-entities_9eb393_fe8f4esrc/main/java/br/ifes/leds/sincap/gerenciaNotificacao/cln/util/dataFactory/CaptacaoData.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:LEDS-sincap-entities_9eb393_fe8f4esrc/main/java/br/ifes/leds/sincap/gerenciaNotificacao/cln/util/dataFactory/ProcessoNotificacaoData.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:LEDS-sincap-entities_a282f1_f7d8e4src/main/java/br/ifes/leds/sincap/gerenciaNotificacao/cln/cdp/relatorios/RelEntrevistaFamiliar.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:LEDS-sincap-entities_acb6ca_de9889src/main/java/br/ifes/leds/sincap/controleInterno/cln/cdp/AnalistaCNCDO.java:21:21:HE_INHERITS_EQUALS_USE_HASHCODE -#Null_Violation_Hunk:LEDS-sincap-entities_acb6ca_de9889src/main/java/br/ifes/leds/sincap/controleInterno/cln/cdp/AnalistaCNCDO.java:21:21:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:LEDS-sincap-entities_c27272_01b57bsrc/main/java/br/ifes/leds/sincap/controleInterno/cln/cdp/AnalistaCNCDO.java:22:22:HE_INHERITS_EQUALS_USE_HASHCODE -#Null_Violation_Hunk:LEDS-sincap-entities_c27272_01b57bsrc/main/java/br/ifes/leds/sincap/controleInterno/cln/cdp/AnalistaCNCDO.java:22:22:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:LEDS-sincap-entities_c27272_01b57bsrc/main/java/br/ifes/leds/sincap/controleInterno/cln/cdp/InstituicaoNotificadora.java:10:10:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:LEDS-sincap-entities_c27272_01b57bsrc/main/java/br/ifes/leds/sincap/controleInterno/cln/cdp/InstituicaoNotificadora.java:10:10:HE_INHERITS_EQUALS_USE_HASHCODE -#Illegal_Line_Position:LEDS-sincap-entities_e19d06_a843c9src/main/java/br/ifes/leds/sincap/gerenciaNotificacao/cln/cdp/DTO/EntrevistaDTO.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:LEDS-sincap-entities_e69070_59fbbbsrc/main/java/br/ifes/leds/sincap/gerenciaNotificacao/cln/cdp/relatorios/RelEntrevistaFamiliar.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:LEDS-sincap-entities_e711e4_232617src/main/java/br/ifes/leds/sincap/controleInterno/cln/cdp/AnalistaCNCDO.java:22:22:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:LEDS-sincap-entities_e711e4_232617src/main/java/br/ifes/leds/sincap/controleInterno/cln/cdp/AnalistaCNCDO.java:22:22:HE_INHERITS_EQUALS_USE_HASHCODE -#Null_Violation_Hunk:LEDS-sincap-entities_e711e4_232617src/main/java/br/ifes/leds/sincap/controleInterno/cln/cdp/InstituicaoNotificadora.java:10:10:HE_INHERITS_EQUALS_USE_HASHCODE -#Null_Violation_Hunk:LEDS-sincap-entities_f15599_4f19f6src/main/java/br/ifes/leds/sincap/controleInterno/cln/cdp/AnalistaCNCDO.java:21:21:HE_INHERITS_EQUALS_USE_HASHCODE -#Null_Violation_Hunk:LEDS-sincap-entities_f15599_4f19f6src/main/java/br/ifes/leds/sincap/controleInterno/cln/cdp/AnalistaCNCDO.java:21:21:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:lemire-RoaringBitmap_f3ac3c_9bbdb6src/main/java/me/lemire/roaringbitmap/experiments/StarSchemaBenchmark.java:-1:-1:NM_FIELD_NAMING_CONVENTION -#Illegal_Line_Position:lennartj-jaxb2-maven-plugin_0bd1fe_a07f14src/main/java/org/codehaus/mojo/jaxb2/XjcMojo.java:-1:-1:UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:lennartj-jaxb2-maven-plugin_0d0e31_981dd3src/main/java/org/codehaus/mojo/jaxb2/XjcMojo.java:631:641:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:lennartj-jaxb2-maven-plugin_0d0e31_981dd3src/main/java/org/codehaus/mojo/jaxb2/XjcMojo.java:649:659:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:lexicalscope-svm_7458b3_196a46src/main/java/com/lexicalscope/symb/vm/StackFrame.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:libetl-soundtransform_cb8748_3f4bb5src/main/java/org/toilelibre/libe/soundtransform/infrastructure/service/audioformat/WavAudioFormatParser.java:13:43:NM_SAME_SIMPLE_NAME_AS_INTERFACE -#Illegal_Line_Position:liferay-liferay-maven-support_857591_e4a1adplugins/liferay-maven-plugin/src/main/java/com/liferay/maven/plugins/AbstractLiferayMojo.java:-1:-1:MS_PKGPROTECT -#Null_Violation_Hunk:lightblue-platform-lightblue-core_021e10_1160e7util/src/main/java/com/redhat/lightblue/util/Path.java:67:172:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:lightblue-platform-lightblue-core_1160e7_458c9ametadata/src/main/java/com/redhat/lightblue/metadata/parser/ParserRegistry.java:27:27:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:lightblue-platform-lightblue-core_1becc2_1d9d53config/src/main/java/com/redhat/lightblue/config/DataSourcesConfiguration.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:lightblue-platform-lightblue-core_1becc2_1d9d53config/src/main/java/com/redhat/lightblue/config/LightblueFactory.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:lightblue-platform-lightblue-core_356331_69ac15query-api/src/main/java/com/redhat/lightblue/query/ArrayMatchExpression.java:41:101:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:lightblue-platform-lightblue-core_356331_69ac15query-api/src/main/java/com/redhat/lightblue/query/FieldComparisonExpression.java:43:103:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:lightblue-platform-lightblue-core_356331_69ac15query-api/src/main/java/com/redhat/lightblue/query/UnaryLogicalExpression.java:37:95:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:lightblue-platform-lightblue-core_356331_69ac15query-api/src/main/java/com/redhat/lightblue/query/ValueComparisonExpression.java:47:108:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:lightblue-platform-lightblue-core_3eccdb_954742config/src/main/java/com/redhat/lightblue/config/DataSourcesConfiguration.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:lightblue-platform-lightblue-core_3eccdb_954742crud/src/main/java/com/redhat/lightblue/crud/Factory.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:lightblue-platform-lightblue-core_3eccdb_954742crud/src/main/java/com/redhat/lightblue/interceptor/InterceptorManager.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:lightblue-platform-lightblue-core_69ac15_67cbfbquery-api/src/main/java/com/redhat/lightblue/query/ArrayQueryMatchProjection.java:30:52:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:lightblue-platform-lightblue-core_69ac15_67cbfbquery-api/src/main/java/com/redhat/lightblue/query/ArrayRangeProjection.java:32:65:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:lightblue-platform-lightblue-core_69ac15_67cbfbquery-api/src/main/java/com/redhat/lightblue/query/ProjectionList.java:40:86:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:lightblue-platform-lightblue-core_75f478_4b9f6dquery-api/src/main/java/com/redhat/lightblue/query/CompositeSortKey.java:40:92:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:lightblue-platform-lightblue-core_75f478_4b9f6dquery-api/src/main/java/com/redhat/lightblue/query/SortKey.java:37:99:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:lightblue-platform-lightblue-core_75f478_4b9f6dquery-api/src/main/java/com/redhat/lightblue/query/Value.java:41:118:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:lightblue-platform-lightblue-core_7f462f_015fc1util/src/main/java/com/redhat/lightblue/util/Path.java:-1:-1:SE_TRANSIENT_FIELD_NOT_RESTORED -#Null_Violation_Hunk:lightblue-platform-lightblue-core_8c6551_c68710lightblue-rdbms/crud/src/main/java/com/redhat/lightblue/crud/rdbms/OracleTranslator.java:55:55:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:lightblue-platform-lightblue-core_9f4372_1d7871metadata/src/main/java/com/redhat/lightblue/metadata/SimpleArrayElement.java:28:49:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:lightblue-platform-lightblue-core_ad50da_b911d4config/src/main/java/com/redhat/lightblue/config/DataSourcesConfiguration.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:lightblue-platform-lightblue-core_ad50da_b911d4config/src/main/java/com/redhat/lightblue/config/LightblueFactory.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:lightblue-platform-lightblue-core_c95ac8_40f0c1lightblue-rdbms/crud/src/main/java/com/redhat/lightblue/crud/rdbms/RDBMSContext.java:-1:-1:NM_FIELD_NAMING_CONVENTION -#Illegal_Line_Position:lkroesen-BubbleBobble_248bb7_0ddc9csrc/main/java/website/frontrow/Board/Unit.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:lkroesen-BubbleBobble_9c4f06_845786src/main/java/website/frontrow/board/Unit.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:lkroesen-BubbleBobble_9c4f06_845786src/main/java/website/frontrow/board/Unit.java:88:88:UPM_UNCALLED_PRIVATE_METHOD -#Illegal_Line_Position:lkroesen-BubbleBobble_9d17cb_7da454src/main/java/website/frontrow/board/Unit.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:lkroesen-BubbleBobble_9d17cb_7da454src/main/java/website/frontrow/board/Unit.java:22:22:NM_METHOD_NAMING_CONVENTION -#Illegal_Line_Position:lkroesen-BubbleBobble_be1350_05fedfsrc/main/java/website/frontrow/Game.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:lkroesen-BubbleBobble_cacac9_9656d4src/main/java/website/frontrow/board/Unit.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:lkroesen-BubbleBobble_cacac9_9656d4src/main/java/website/frontrow/board/Unit.java:88:88:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:locationtech-spatial4j_fe24dc_433adfsrc/main/java/com/spatial4j/core/io/WKTShapeParser.java:300:435:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:lrozenblyum-chess_526c4d_14ab03src/main/java/com/leokom/chess/gui/winboard/WinboardPlayer.java:14:14:UWF_UNWRITTEN_FIELD -#Illegal_Line_Position:lviggiano-owner_2e1390_2f4caesrc/main/java/org/aeonbits/owner/ConfigURLFactory.java:-1:-1:SE_TRANSIENT_FIELD_NOT_RESTORED -#Null_Violation_Hunk:lviggiano-owner_2e1390_2f4caesrc/main/java/org/aeonbits/owner/ConfigURLFactory.java:23:47:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:lviggiano-owner_99f038_85ad36owner/src/main/java/org/aeonbits/owner/loaders/XMLLoader.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:lviggiano-owner_bb8d83_472770owner/src/main/java/org/aeonbits/owner/loaders/PropertiesLoader.java:22:33:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:lviggiano-owner_d99778_a0a724src/main/java/org/aeonbits/owner/event/TransactionalPropertyChangeListener.java:-1:-1:NM_SAME_SIMPLE_NAME_AS_INTERFACE -#Illegal_Line_Position:maartentbm-ContextPL1_5ebc69_aee5c1src/main/java/nl/tudelft/ti2806/pl1/DGraph/BasicDNode.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:maartentbm-ContextPL1_6a09bb_ac18e1src/main/java/nl/tudelft/ti2806/pl1/gui/contentpane/GraphPanel.java:462:495:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:maartentbm-ContextPL1_7779ae_cecb83src/main/java/nl/tudelft/ti2806/pl1/gui/contentpane/Content.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:maartentbm-ContextPL1_9141b0_457ec1src/main/java/nl/tudelft/ti2806/pl1/gui/contentpane/GraphPanel.java:627:644:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:maartentbm-ContextPL1_98619c_7b1c1fsrc/main/java/nl/tudelft/ti2806/pl1/gui/contentpane/GraphPanel.java:626:643:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:maartentbm-ContextPL1_a14b22_5843b2src/main/java/nl/tudelft/ti2806/pl1/geneAnnotation/RefGeneCompare.java:14:21:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:maartentbm-ContextPL1_f2f13b_45e554src/main/java/nl/tudelft/ti2806/pl1/gui/contentpane/GraphPanel.java:626:643:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:mafagafogigante-dungeon_0e1336_7d4a76src/main/java/org/dungeon/util/Percentage.java:36:54:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:mafagafogigante-dungeon_1377cf_441001src/main/java/org/dungeon/entity/Visibility.java:31:36:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:mafagafogigante-dungeon_41abd6_a4be99src/main/java/org/dungeon/io/FileLastModifiedComparator.java:31:35:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:mafagafogigante-dungeon_624972_0324d4src/main/java/org/dungeon/stats/ExplorationStatistics.java:37:128:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:mafagafogigante-dungeon_6832e1_5b165asrc/main/java/org/dungeon/game/GameState.java:51:222:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:mafagafogigante-dungeon_6b8078_6d0558src/main/java/org/dungeon/game/GameState.java:51:217:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:mafagafogigante-dungeon_99e46c_3a1b22src/main/java/org/dungeon/entity/Visibility.java:31:51:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:mafagafogigante-dungeon_9e06b3_7e685esrc/main/java/org/mafagafogigante/dungeon/stats/ExplorationStatisticsEntry.java:33:66:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:mafagafogigante-dungeon_a38a92_b2fe78src/main/java/org/dungeon/game/GameData.java:-1:-1:MS_PKGPROTECT -#Illegal_Line_Position:mafagafogigante-dungeon_af643b_c60ff8src/main/java/org/dungeon/game/GameData.java:-1:-1:MS_CANNOT_BE_FINAL -#Null_Violation_Hunk:mafagafogigante-dungeon_b2e6c6_5c0396src/main/java/org/dungeon/io/FileLastModifiedComparator.java:31:40:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE 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-#Illegal_Line_Position:mafagafogigante-dungeon_fdedc4_d53821src/main/java/org/dungeon/util/Constants.java:-1:-1:STCAL_STATIC_SIMPLE_DATE_FORMAT_INSTANCE -#Null_Violation_Hunk:marklogic-java-client-api_0d733f_b44c7csrc/main/java/com/marklogic/client/query/StructuredQueryBuilder.java:1738:1786:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:marklogic-java-client-api_51f056_93ff22src/main/java/com/marklogic/client/impl/GraphManagerImpl.java:405:409:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:marklogic-java-client-api_51f056_93ff22src/main/java/com/marklogic/client/impl/GraphManagerImpl.java:405:409:SE_BAD_FIELD_INNER_CLASS -#Null_Violation_Hunk:marklogic-java-client-api_565b38_2c1dc7src/main/java/com/marklogic/client/impl/QueryManagerImpl.java:342:412:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:marklogic-java-client-api_a96ff0_6dad85src/main/java/com/marklogic/client/io/DocumentMetadataHandle.java:134:240:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:marklogic-java-client-api_a96ff0_6dad85src/main/java/com/marklogic/client/io/DocumentMetadataHandle.java:134:240:SE_BAD_FIELD_INNER_CLASS -#Null_Violation_Hunk:marklogic-java-client-api_a96ff0_6dad85src/main/java/com/marklogic/client/io/DocumentMetadataHandle.java:134:240:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:marklogic-java-client-api_aae966_797ec5src/main/java/com/marklogic/client/query/StructuredQueryBuilder.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:marklogic-java-client-api_b84b38_4e35d5src/main/java/com/marklogic/client/io/SearchHandle.java:469:481:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:marklogic-java-client-api_e41113_117b4csrc/main/java/com/marklogic/client/io/SearchHandle.java:-1:-1:UWF_NULL_FIELD -#Illegal_Line_Position:marklogic-java-client-api_e41113_117b4csrc/main/java/com/marklogic/client/io/TuplesHandle.java:-1:-1:UWF_NULL_FIELD -#Null_Violation_Hunk:marklogic-java-client-api_f41a0e_0de5d3src/main/java/com/marklogic/client/config/QueryOptions.java:2451:2451:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:marklogic-java-client-api_f41a0e_0de5d3src/main/java/com/marklogic/client/config/QueryOptions.java:2848:2848:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:marklogic-java-client-api_f41a0e_0de5d3src/main/java/com/marklogic/client/config/QueryOptions.java:1768:1769:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:marklogic-java-client-api_f41a0e_0de5d3src/main/java/com/marklogic/client/config/QueryOptions.java:2465:2465:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:marklogic-java-client-api_f41a0e_0de5d3src/main/java/com/marklogic/client/config/QueryOptions.java:2978:2978:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:marklogic-java-client-api_fb4400_c99c71src/main/java/com/marklogic/client/config/search/impl/ConstraintImpl.java:18:54:RI_REDUNDANT_INTERFACES -#Illegal_Line_Position:marschraner-svm_2e18c6_4d9f9bsrc/main/java/ch/metzenthin/svm/domain/commands/ValidateSchuelerCommand.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:marschraner-svm_89f00e_e99c78src/main/java/ch/metzenthin/svm/ui/control/AngehoerigerController.java:91:91:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:marschraner-svm_89f00e_e99c78src/main/java/ch/metzenthin/svm/ui/control/SchuelerController.java:212:212:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:marschraner-svm_b9e085_357b23src/main/java/ch/metzenthin/svm/ui/control/AngehoerigerController.java:91:91:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:marschraner-svm_b9e085_357b23src/main/java/ch/metzenthin/svm/ui/control/SchuelerController.java:212:212:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:marschraner-svm_c702f6_cc2d29src/main/java/ch/metzenthin/svm/common/utils/StringNumberComparator.java:8:53:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Illegal_Line_Position:marschraner-svm_ca5485_a97be6src/main/java/ch/metzenthin/svm/ui/components/SchuelerBereitsInDatenbankDialog.java:-1:-1:UWF_NULL_FIELD -#Null_Violation_Hunk:martiner-gooddata-java_4576bc_3acd35src/main/java/com/gooddata/AbstractService.java:119:166:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:martiner-gooddata-java_f39f14_0d65fasrc/main/java/com/gooddata/AbstractService.java:119:166:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:marylinh-ESAPI_JAVA_ALL_02f6e0_5a39f0src/main/java/org/owasp/esapi/Encoder.java:116:116:MS_MUTABLE_ARRAY -#Null_Violation_Hunk:marylinh-ESAPI_JAVA_ALL_02f6e0_5a39f0src/main/java/org/owasp/esapi/Encoder.java:117:117:MS_MUTABLE_ARRAY -#Null_Violation_Hunk:marylinh-ESAPI_JAVA_ALL_0b94bc_d6915fsrc/main/java/org/owasp/esapi/SafeFile.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Illegal_Line_Position:marylinh-ESAPI_JAVA_ALL_318c83_ce7767src/main/java/org/owasp/esapi/reference/DefaultUser.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:marylinh-ESAPI_JAVA_ALL_692c16_3c6e1bsrc/main/java/org/owasp/esapi/crypto/CipherSpec.java:-1:-1:SE_TRANSIENT_FIELD_NOT_RESTORED -#Null_Violation_Hunk:marylinh-ESAPI_JAVA_ALL_ab1fa1_c505a1src/main/java/org/owasp/esapi/reference/FileBasedAuthenticator.java:224:236:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:marylinh-ESAPI_JAVA_ALL_fb3cde_2ba17fsrc/main/java/org/owasp/esapi/SafeFile.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:marytts-marytts_b443b5_bd7625src/test/java/marytts/tests/junit4/ByteStringTranslatorTest.java:123:123:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:maxymania-jxta-jxse_777caa_7ec2bdsrc/main/java/net/jxta/impl/endpoint/tls/TlsTransport.java:418:418:IS2_INCONSISTENT_SYNC -#Null_Violation_Hunk:maxymania-jxta-jxse_bf66fc_6e9cebsrc/main/java/net/jxta/impl/endpoint/tcp/TcpTransport.java:590:590:IS2_INCONSISTENT_SYNC -#Null_Violation_Hunk:maxymania-jxta-jxse_dcfde4_379efcsrc/main/java/net/jxta/document/Advertisement.java:131:131:IS2_INCONSISTENT_SYNC -#Null_Violation_Hunk:maxymania-jxta-jxse_dcfde4_379efcsrc/main/java/net/jxta/document/Advertisement.java:134:134:IS2_INCONSISTENT_SYNC -#Null_Violation_Hunk:maxymania-jxta-jxse_dcfde4_379efcsrc/main/java/net/jxta/impl/endpoint/WireFormatMessageBinary.java:1287:1396:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:mbosecke-pebble_045797_d4228esrc/main/java/com/mitchellbosecke/pebble/extension/AbstractNodeVisitor.java:27:27:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:mbosecke-pebble_045797_d4228esrc/main/java/com/mitchellbosecke/pebble/extension/AbstractNodeVisitor.java:20:20:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:mbosecke-pebble_057d69_1ccb4esrc/main/java/com/mitchellbosecke/pebble/extension/AbstractNodeVisitor.java:20:20:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:mbosecke-pebble_057d69_1ccb4esrc/main/java/com/mitchellbosecke/pebble/extension/AbstractNodeVisitor.java:27:27:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:mbosecke-pebble_1b464d_6ebceasrc/main/java/com/mitchellbosecke/pebble/extension/AbstractNodeVisitor.java:27:27:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:mbosecke-pebble_1b464d_6ebceasrc/main/java/com/mitchellbosecke/pebble/extension/AbstractNodeVisitor.java:20:20:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:mbosecke-pebble_2d9f7b_28db22src/main/java/com/mitchellbosecke/pebble/extension/AbstractNodeVisitor.java:20:20:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:mbosecke-pebble_2d9f7b_28db22src/main/java/com/mitchellbosecke/pebble/extension/AbstractNodeVisitor.java:27:27:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:mbosecke-pebble_57e397_da326asrc/main/java/com/mitchellbosecke/pebble/extension/AbstractNodeVisitor.java:20:20:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:mbosecke-pebble_57e397_da326asrc/main/java/com/mitchellbosecke/pebble/extension/AbstractNodeVisitor.java:27:27:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:mbosecke-pebble_6e35aa_eab913src/test/java/com/mitchellbosecke/pebble/CoreFiltersTest.java:110:115:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:mbosecke-pebble_6e35aa_eab913src/test/java/com/mitchellbosecke/pebble/CoreTokenParsersTest.java:89:94:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:mbosecke-pebble_6e35aa_eab913src/test/java/com/mitchellbosecke/pebble/GetAttributeTest.java:139:140:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:mbosecke-pebble_6e35aa_eab913src/test/java/com/mitchellbosecke/pebble/GetAttributeTest.java:115:116:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:mbosecke-pebble_6e35aa_eab913src/test/java/com/mitchellbosecke/pebble/GetAttributeTest.java:135:136:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:mbosecke-pebble_6e35aa_eab913src/test/java/com/mitchellbosecke/pebble/GetAttributeTest.java:143:144:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:mbosecke-pebble_6e35aa_eab913src/test/java/com/mitchellbosecke/pebble/GetAttributeTest.java:127:128:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:mbosecke-pebble_6e35aa_eab913src/test/java/com/mitchellbosecke/pebble/GetAttributeTest.java:131:132:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:mbosecke-pebble_6f7b1f_bde07csrc/main/java/com/mitchellbosecke/pebble/node/expression/NodeExpressionBinary.java:23:23:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:mbosecke-pebble_6f7b1f_bde07csrc/main/java/com/mitchellbosecke/pebble/node/expression/NodeExpressionBinary.java:22:22:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:mbosecke-pebble_7e0046_6e5994src/main/java/com/mitchellbosecke/pebble/extension/AbstractNodeVisitor.java:27:27:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:mbosecke-pebble_7e0046_6e5994src/main/java/com/mitchellbosecke/pebble/extension/AbstractNodeVisitor.java:20:20:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:mbosecke-pebble_a652e1_301943src/main/java/com/mitchellbosecke/pebble/extension/i18n/i18nFunction.java:20:40:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:mbosecke-pebble_afe8db_787529src/test/java/com/mitchellbosecke/pebble/CoreFiltersTest.java:110:115:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:mbosecke-pebble_afe8db_787529src/test/java/com/mitchellbosecke/pebble/CoreTokenParsersTest.java:89:94:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:mbosecke-pebble_afe8db_787529src/test/java/com/mitchellbosecke/pebble/GetAttributeTest.java:139:140:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:mbosecke-pebble_afe8db_787529src/test/java/com/mitchellbosecke/pebble/GetAttributeTest.java:143:144:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:mbosecke-pebble_afe8db_787529src/test/java/com/mitchellbosecke/pebble/GetAttributeTest.java:135:136:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:mbosecke-pebble_afe8db_787529src/test/java/com/mitchellbosecke/pebble/GetAttributeTest.java:127:128:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:mbosecke-pebble_afe8db_787529src/test/java/com/mitchellbosecke/pebble/GetAttributeTest.java:131:132:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:mbosecke-pebble_afe8db_787529src/test/java/com/mitchellbosecke/pebble/GetAttributeTest.java:115:116:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:mbosecke-pebble_c13417_2396b4src/main/java/com/mitchellbosecke/pebble/extension/AbstractNodeVisitor.java:27:27:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:mbosecke-pebble_c13417_2396b4src/main/java/com/mitchellbosecke/pebble/extension/AbstractNodeVisitor.java:20:20:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:mbosecke-pebble_d6a410_549bdesrc/main/java/com/mitchellbosecke/pebble/extension/AbstractNodeVisitor.java:20:20:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:mbosecke-pebble_d6a410_549bdesrc/main/java/com/mitchellbosecke/pebble/extension/AbstractNodeVisitor.java:27:27:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Illegal_Line_Position:mebigfatguy-fb-contrib_1555c2_7c04d4src/com/mebigfatguy/fbcontrib/detect/ImmatureClass.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:mebigfatguy-fb-contrib_2040c3_96f915src/com/mebigfatguy/fbcontrib/detect/CopiedOverriddenMethod.java:373:388:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:mebigfatguy-fb-contrib_86166f_0614eesrc/com/mebigfatguy/fbcontrib/detect/LiteralStringComparison.java:221:240:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:mebigfatguy-fb-contrib_adaf6a_72ef2fsrc/com/mebigfatguy/fbcontrib/detect/FieldCouldBeLocal.java:439:505:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:mebigfatguy-fb-contrib_b72e07_126e18src/com/mebigfatguy/fbcontrib/detect/OverlyPermissiveMethod.java:132:132:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:mebigfatguy-fb-contrib_d28181_e732aesrc/com/mebigfatguy/fbcontrib/detect/LiteralStringComparison.java:221:240:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:mebigfatguy-fb-contrib_ed3c9f_72b7ddsrc/com/mebigfatguy/fbcontrib/utils/Values.java:312:312:UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:mebigfatguy-fb-contrib_ed3c9f_72b7ddsrc/com/mebigfatguy/fbcontrib/utils/Values.java:237:237:UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD -#Illegal_Line_Position:metamx-java-util_565992_70db32src/main/java/com/metamx/common/parsers/DelimitedParser.java:-1:-1:UWF_NULL_FIELD -#Null_Violation_Hunk:minusone13-InvoicingSystem_045a3b_bbb1b9src/main/java/presentation/saleui/JPmanageBills2.java:397:636:SIC_INNER_SHOULD_BE_STATIC_NEEDS_THIS -#Null_Violation_Hunk:minusone13-InvoicingSystem_045a3b_bbb1b9src/main/java/presentation/saleui/JPmanageCustomer.java:634:695:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_08152e_0ee836src/main/java/presentation/financialui/JPmanageBills2.java:241:441:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_0bcb6a_f86c0bsrc/main/java/presentation/financialui/InitialInfoPanel.java:73:73:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:minusone13-InvoicingSystem_0bcb6a_f86c0bsrc/main/java/presentation/financialui/InitialInfoPanel.java:66:73:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_111daa_a1d2b8src/main/java/presentation/commodityui/JPmanageBills2.java:356:464:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_111daa_a1d2b8src/main/java/presentation/saleui/JPmanageBills2.java:392:611:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_111daa_a1d2b8src/main/java/presentation/saleui/JPmanageCustomer.java:258:415:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:minusone13-InvoicingSystem_11a8fe_94ce08src/main/java/po/SaleBackSheetPO.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:minusone13-InvoicingSystem_11a8fe_94ce08src/main/java/presentation/managerui/JPBill.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:minusone13-InvoicingSystem_191470_9607bdsrc/main/java/businesslogic/customerbl/StubCustomer.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:minusone13-InvoicingSystem_191470_9607bdsrc/main/java/businesslogic/salebillbl/salebillController.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:minusone13-InvoicingSystem_191470_9607bdsrc/main/java/businesslogic/salebillbl/salebillList.java:3:3:NM_CLASS_NAMING_CONVENTION -#Illegal_Line_Position:minusone13-InvoicingSystem_191470_9607bdsrc/main/java/businesslogic/salebillbl/StubPurBackSheet.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:minusone13-InvoicingSystem_191470_9607bdsrc/main/java/businesslogic/salebillbl/StubPurSheet.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:minusone13-InvoicingSystem_191470_9607bdsrc/main/java/businesslogic/salebillbl/StubSaleBackSheet.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:minusone13-InvoicingSystem_191470_9607bdsrc/main/java/businesslogic/salebillbl/StubSaleSheet.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:minusone13-InvoicingSystem_191470_9607bdsrc/main/java/po/CustomerPO.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:minusone13-InvoicingSystem_2b7622_624a17src/main/java/vo/VO.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:minusone13-InvoicingSystem_34ac0d_94ce08src/main/java/po/PurBackSheetPO.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:minusone13-InvoicingSystem_360e0e_32caeasrc/main/java/businesslogic/salebillbl/StubSale.java:65:65:NM_METHOD_NAMING_CONVENTION -#Null_Violation_Hunk:minusone13-InvoicingSystem_3838b2_f33e79src/main/java/presentation/commodityui/StockCheckPanel.java:207:449:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_39d1f4_813ddfsrc/main/java/presentation/managerui/JPpassBill2.java:334:504:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_3b8026_2b4e06src/main/java/presentation/saleui/JPmanageBills2.java:397:636:SIC_INNER_SHOULD_BE_STATIC_NEEDS_THIS -#Null_Violation_Hunk:minusone13-InvoicingSystem_3b8026_2b4e06src/main/java/presentation/saleui/JPmanageCustomer.java:634:695:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_4756fc_bfb244src/main/java/businesslogic/commoditybl/StubCategory.java:50:50:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:minusone13-InvoicingSystem_47f4de_0b4427src/main/java/presentation/commodityui/StockManagerDriver.java:10:10:UC_USELESS_VOID_METHOD -#Illegal_Line_Position:minusone13-InvoicingSystem_4ace6d_96265bsrc/main/java/po/CommodityPO.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:minusone13-InvoicingSystem_523a4c_ed2410src/main/java/presentation/commodityui/JPmanageBills2.java:-1:-1:NM_FIELD_NAMING_CONVENTION -#Null_Violation_Hunk:minusone13-InvoicingSystem_53ffb6_11c3e2src/main/java/presentation/commodityui/StockCheckPanel.java:207:449:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_5745ee_65d64csrc/main/java/presentation/financialui/InitialInfoPanel.java:73:73:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:minusone13-InvoicingSystem_5745ee_65d64csrc/main/java/presentation/financialui/InitialInfoPanel.java:66:73:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_5b233a_6be038src/main/java/presentation/userui/JPmanageUser.java:254:333:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_6038a2_ffc29dsrc/main/java/presentation/commodityui/JPtreeContent.java:113:120:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_65d614_3479c7src/main/java/presentation/commodityui/JPtreeContent.java:113:120:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_667c1d_1a5283src/main/java/businesslogic/customerbl/Customer.java:67:67:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:minusone13-InvoicingSystem_667c1d_1a5283src/main/java/businesslogic/customerbl/customerList.java:7:7:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:minusone13-InvoicingSystem_667c1d_1a5283src/main/java/businesslogic/customerbl/customerList.java:7:7:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:minusone13-InvoicingSystem_6951f1_6adf51src/main/java/presentation/financialui/InitialInfoPanel.java:66:73:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_6951f1_6adf51src/main/java/presentation/financialui/InitialInfoPanel.java:73:73:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:minusone13-InvoicingSystem_6a07d7_526f82src/main/java/presentation/commodityui/JPtreeContent.java:113:120:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_6be038_111daasrc/main/java/presentation/financialui/JPmanageAccount.java:279:370:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_6be038_111daasrc/main/java/presentation/financialui/JPmanageAccount.java:486:547:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_6be038_111daasrc/main/java/presentation/userui/JPmanageUser.java:478:539:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_6c2370_8bc71esrc/main/java/presentation/managerui/JPpassBill2.java:334:504:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_6e1fb8_73a4d1src/main/java/data/commoditydata/StubCommodityList.java:6:6:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:minusone13-InvoicingSystem_6ec4a6_b82993src/main/java/presentation/commodityui/JPManagerComOfStock.java:192:308:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:minusone13-InvoicingSystem_73110d_671c5asrc/main/java/po/PO.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:minusone13-InvoicingSystem_73a4d1_dbdc77src/main/java/data/commoditydata/StubCommodityList.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:minusone13-InvoicingSystem_76b873_64d897src/main/java/businesslogic/commoditybl/StubCategory.java:50:50:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:minusone13-InvoicingSystem_7914cf_31587fsrc/main/java/presentation/managerui/JPpassBill2.java:334:504:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_7fc3a8_25b43fsrc/main/java/presentation/financialui/BusinessProcessPanel.java:784:1089:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_7fc3a8_25b43fsrc/main/java/presentation/financialui/SaleDetailPanel.java:278:586:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_8c52ce_153e17src/main/java/presentation/saleui/JPmanageBills2.java:397:636:SIC_INNER_SHOULD_BE_STATIC_NEEDS_THIS -#Null_Violation_Hunk:minusone13-InvoicingSystem_8c52ce_153e17src/main/java/presentation/saleui/JPmanageCustomer.java:634:695:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_8e977a_d73f22src/main/java/presentation/commodityui/JPtreeContent.java:113:120:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_8f528b_29fd9fsrc/main/java/presentation/managerui/JPBill.java:309:335:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_910050_f3e674src/main/java/presentation/userui/JPmanageUser.java:254:333:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_919c01_c3a32esrc/main/java/presentation/commodityui/JPmanageBills2.java:356:464:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_919c01_c3a32esrc/main/java/presentation/saleui/JPmanageBills2.java:392:611:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_919c01_c3a32esrc/main/java/presentation/saleui/JPmanageCustomer.java:258:415:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_930f4b_ce2103src/main/java/vo/financialBillVO/ReceiptVO.java:91:91:UC_USELESS_VOID_METHOD -#Illegal_Line_Position:minusone13-InvoicingSystem_99e086_8fd37bsrc/main/java/po/PO.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:minusone13-InvoicingSystem_a03082_ba459fsrc/main/java/presentation/managerui/JPmanagerStrategy2.java:263:535:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_a03f1e_91352fsrc/main/java/presentation/financialui/InitialInfoPanel.java:56:63:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_a03f1e_91352fsrc/main/java/presentation/financialui/InitialInfoPanel.java:63:63:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:minusone13-InvoicingSystem_aff074_76b873src/main/java/presentation/financialui/JPmanageBills2.java:241:441:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_b7175d_6353c6src/main/java/presentation/managerui/JPpassBill2.java:334:504:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_bf5f15_ce32acsrc/main/java/businesslogic/commoditybl/StubCategory.java:50:50:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:minusone13-InvoicingSystem_bf5f15_ce32acsrc/main/java/presentation/financialui/JPmanageBills2.java:241:441:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_bfb244_64d897src/main/java/presentation/financialui/JPmanageBills2.java:241:441:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_bfd387_f6bb97src/main/java/businesslogic/strategybl/StubStrategyPool.java:75:75:NM_METHOD_NAMING_CONVENTION -#Null_Violation_Hunk:minusone13-InvoicingSystem_bfd387_f6bb97src/main/java/businesslogic/strategybl/StubStrategyPool.java:79:79:NM_METHOD_NAMING_CONVENTION -#Null_Violation_Hunk:minusone13-InvoicingSystem_bfd387_f6bb97src/main/java/businesslogic/strategybl/StubStrategyPool.java:71:71:NM_METHOD_NAMING_CONVENTION -#Null_Violation_Hunk:minusone13-InvoicingSystem_c37a04_903e05src/main/java/businesslogic/managerbl/StubManager.java:37:37:NM_METHOD_NAMING_CONVENTION -#Null_Violation_Hunk:minusone13-InvoicingSystem_c37a04_903e05src/main/java/businesslogic/managerbl/StubManager.java:61:61:NM_METHOD_NAMING_CONVENTION -#Null_Violation_Hunk:minusone13-InvoicingSystem_c37a04_903e05src/main/java/businesslogic/managerbl/StubManager.java:57:57:NM_METHOD_NAMING_CONVENTION -#Null_Violation_Hunk:minusone13-InvoicingSystem_c37a04_903e05src/main/java/businesslogic/managerbl/StubManager.java:53:53:NM_METHOD_NAMING_CONVENTION -#Null_Violation_Hunk:minusone13-InvoicingSystem_c7aa53_6a87b8src/main/java/presentation/financialui/JPmanageAccount.java:279:370:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_c7aa53_6a87b8src/main/java/presentation/financialui/JPmanageAccount.java:486:547:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_c7aa53_6a87b8src/main/java/presentation/userui/JPmanageUser.java:478:539:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:minusone13-InvoicingSystem_cfa646_94c68csrc/main/java/businesslogic/examinebl/StubBillPool.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:minusone13-InvoicingSystem_d26296_8c52cesrc/main/java/presentation/commodityui/JPmanageBills2.java:356:464:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_d26296_8c52cesrc/main/java/presentation/saleui/JPmanageBills2.java:392:611:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_d26296_8c52cesrc/main/java/presentation/saleui/JPmanageCustomer.java:258:415:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_d422c1_169427src/main/java/vo/financialBillVO/ReceiptVO.java:91:91:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:minusone13-InvoicingSystem_d7ccc1_c19d89src/main/java/businesslogic/salebillbl/StubSale.java:65:65:NM_METHOD_NAMING_CONVENTION -#Null_Violation_Hunk:minusone13-InvoicingSystem_d8e94a_9ca421src/main/java/vo/financialBillVO/ReceiptVO.java:91:91:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:minusone13-InvoicingSystem_f3e674_b691ffsrc/main/java/presentation/financialui/JPmanageAccount.java:279:370:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_f3e674_b691ffsrc/main/java/presentation/financialui/JPmanageAccount.java:486:547:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_f3e674_b691ffsrc/main/java/presentation/userui/JPmanageUser.java:478:539:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:minusone13-InvoicingSystem_f6a518_afdb4bsrc/main/java/vo/financialBillVO/ReceiptVO.java:91:91:UC_USELESS_VOID_METHOD -#Illegal_Line_Position:minusone13-InvoicingSystem_f7ae52_8f53e3src/main/java/businesslogic/salebillbl/salebillController.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:mkovatsc-Californium_0e9a09_0e0ae2californium/src/main/java/ch/ethz/inf/vs/californium/coap/registries/OptionNumberRegistry.java:47:48:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:mkovatsc-Californium_1ec0f5_90a109californium/src/test/java/ch/ethz/inf/vs/californium/test/lockstep/BlockwiseServerSide.java:594:594:UPM_UNCALLED_PRIVATE_METHOD -#Illegal_Line_Position:mkovatsc-Californium_42eedf_a63ee5californium/src/main/java/ch/ethz/inf/vs/californium/endpoint/resources/ProxyCacheResource.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:mkovatsc-Californium_42eedf_a63ee5californium/src/main/java/ch/ethz/inf/vs/californium/endpoint/resources/ProxyCacheResource.java:358:358:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:mkovatsc-Californium_484cf7_7b4f54californium/src/main/java/ch/ethz/inf/vs/californium/endpoint/ProxyEndpoint.java:219:242:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:mkovatsc-Californium_4cfc94_04600bcalifornium/src/main/java/ch/ethz/inf/vs/californium/endpoint/RDResource.java:53:53:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:mkovatsc-Californium_4cfc94_04600bcalifornium/src/main/java/ch/ethz/inf/vs/californium/endpoint/RDResource.java:37:37:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:mkovatsc-Californium_4cfc94_04600bcalifornium/src/main/java/ch/ethz/inf/vs/californium/endpoint/RDResource.java:58:58:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:mkovatsc-Californium_4cfc94_04600bcalifornium/src/main/java/ch/ethz/inf/vs/californium/endpoint/RDResource.java:48:48:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:mkovatsc-Californium_5bf1a0_3da6a7californium/src/main/java/ch/ethz/inf/vs/californium/coap/OptionNumberRegistry.java:74:79:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:mkovatsc-Californium_6d199b_84768ecf-browser/src/main/java/ch/ethz/inf/vs/californium/examples/GUIClient.java:247:257:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:mkovatsc-Californium_735237_4d0822californium/src/test/java/ch/ethz/inf/vs/californium/test/lockstep/ObserveServerSide.java:255:255:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:mkovatsc-Californium_86d96e_367d3acalifornium/src/test/java/ch/ethz/inf/vs/californium/test/lockstep/BlockwiseServerSide.java:594:594:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:mkovatsc-Californium_8a27d4_035716californium/src/main/java/ch/ethz/inf/vs/californium/coap/Message.java:106:110:NM_CLASS_NAMING_CONVENTION -#Illegal_Line_Position:mkovatsc-Californium_a42a48_fc751ccf-plugtest-client/src/main/java/ch/ethz/inf/vs/californium/examples/PlugtestClient.java:-1:-1:NM_FIELD_NAMING_CONVENTION -#Illegal_Line_Position:mkovatsc-Californium_c3693c_f9ea4ccf-plugtest-client/src/main/java/ch/ethz/inf/vs/californium/examples/PlugtestClient.java:-1:-1:NM_FIELD_NAMING_CONVENTION -#Null_Violation_Hunk:mkovatsc-Californium_d3b3bb_f45660californium/src/main/java/ch/ethz/inf/vs/californium/endpoint/RDResource.java:37:37:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:mkovatsc-Californium_d3b3bb_f45660californium/src/main/java/ch/ethz/inf/vs/californium/endpoint/RDResource.java:48:48:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:mkovatsc-Californium_d3b3bb_f45660californium/src/main/java/ch/ethz/inf/vs/californium/endpoint/RDResource.java:53:53:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:mkovatsc-Californium_d3b3bb_f45660californium/src/main/java/ch/ethz/inf/vs/californium/endpoint/RDResource.java:58:58:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:mkovatsc-Californium_d77979_40eac2cf-plugtest-client/src/main/java/ch/ethz/inf/vs/californium/examples/block/TD_COAP_BLOCK_01.java:48:81:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:mojohaus-nbm-maven-plugin_3ddb4e_44ea3dsrc/main/java/org/codehaus/mojo/nbm/CreateNetbeansFileStructureMojo.java:107:107:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Illegal_Line_Position:mojohaus-nbm-maven-plugin_40c5a1_054d80src/main/java/org/codehaus/mojo/nbm/CreateClusterMojo.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:mojohaus-nbm-maven-plugin_40c5a1_054d80src/main/java/org/codehaus/mojo/nbm/RunNetBeansMojo.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:mojohaus-nbm-maven-plugin_b97659_3392e5src/main/java/org/codehaus/mojo/nbm/AbstractNbmMojo.java:388:388:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:mojohaus-nbm-maven-plugin_bdf3fe_0fd11csrc/main/java/org/codehaus/mojo/nbm/AbstractNbmMojo.java:464:482:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:mojohaus-nbm-maven-plugin_bdf3fe_0fd11csrc/main/java/org/codehaus/mojo/nbm/CreateClusterAppMojo.java:638:646:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:mojohaus-nbm-maven-plugin_bdf3fe_0fd11csrc/main/java/org/codehaus/mojo/nbm/PopulateRepositoryMojo.java:969:1016:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:mojohaus-nbm-maven-plugin_bdf3fe_0fd11csrc/main/java/org/codehaus/mojo/nbm/PopulateRepositoryMojo.java:1021:1101:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:mojohaus-nbm-maven-plugin_dac289_8090edsrc/main/java/org/codehaus/mojo/nbm/CreateNetbeansFileStructure.java:96:96:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:mojohaus-nbm-maven-plugin_f71b29_d1057dsrc/main/java/org/codehaus/mojo/nbm/CreateNetbeansFileStructure.java:118:118:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:mojohaus-nbm-maven-plugin_fa517c_9703bcsrc/main/java/org/codehaus/mojo/nbm/CreateNetbeansFileStructureMojo.java:111:111:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Illegal_Line_Position:movsim-movsim_0d3876_e07086src/main/java/org/movsim/simulator/roadSection/impl/OnrampMobilImpl.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:movsim-movsim_371f60_fae14esrc/main/java/org/movsim/simulator/Simulator.java:232:232:UC_USELESS_VOID_METHOD -#Illegal_Line_Position:movsim-movsim_4202b6_b271a9src/main/java/org/movsim/simulator/roadSection/impl/OnrampMobilImpl.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:movsim-movsim_4202b6_b271a9src/main/java/org/movsim/simulator/vehicles/lanechanging/impl/LaneChangingModelImpl.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:movsim-movsim_8841f5_f9f52fsrc/main/java/org/movsim/consumption/impl/EngineModelImpl.java:278:278:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:movsim-movsim_92717c_c45a8csrc/main/java/org/movsim/simulator/roadSection/impl/OnrampMobilImpl.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:mrniko-netty-socketio_1ef006_50bdf7src/main/java/com/corundumstudio/socketio/parser/JacksonJsonSupport.java:98:152:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:mrniko-netty-socketio_1ef006_50bdf7src/main/java/com/corundumstudio/socketio/parser/JacksonJsonSupport.java:52:93:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:mrniko-netty-socketio_1ef006_50bdf7src/main/java/com/corundumstudio/socketio/parser/JacksonJsonSupport.java:157:192:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:mrniko-netty-socketio_1ef006_50bdf7src/main/java/com/corundumstudio/socketio/parser/JacksonJsonSupport.java:157:192:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:mrniko-netty-socketio_2525d5_f7da1asrc/main/java/com/corundumstudio/socketio/protocol/JacksonJsonSupport.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:mrniko-netty-socketio_2525d5_f7da1asrc/main/java/com/corundumstudio/socketio/protocol/JacksonJsonSupport.java:56:99:SE_BAD_FIELD_INNER_CLASS -#Null_Violation_Hunk:mrniko-netty-socketio_2d34e8_a20ce2src/main/java/com/corundumstudio/socketio/parser/JacksonJsonSupport.java:52:93:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:mrniko-netty-socketio_2d34e8_a20ce2src/main/java/com/corundumstudio/socketio/parser/JacksonJsonSupport.java:98:152:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:mrniko-netty-socketio_2d34e8_a20ce2src/main/java/com/corundumstudio/socketio/parser/JacksonJsonSupport.java:157:192:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:mrniko-netty-socketio_2d34e8_a20ce2src/main/java/com/corundumstudio/socketio/parser/JacksonJsonSupport.java:157:192:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:mrniko-netty-socketio_477336_3924d2src/main/java/com/corundumstudio/socketio/ack/AckManager.java:35:56:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:mrniko-netty-socketio_5e9ffb_512968src/main/java/com/corundumstudio/socketio/protocol/JacksonJsonSupport.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:mrniko-netty-socketio_5e9ffb_512968src/main/java/com/corundumstudio/socketio/protocol/JacksonJsonSupport.java:55:98:SE_BAD_FIELD_INNER_CLASS -#Null_Violation_Hunk:mrniko-netty-socketio_5e9ffb_512968src/main/java/com/corundumstudio/socketio/protocol/JacksonJsonSupport.java:103:158:SE_BAD_FIELD_INNER_CLASS -#Null_Violation_Hunk:mrniko-netty-socketio_5e9ffb_512968src/main/java/com/corundumstudio/socketio/protocol/JacksonJsonSupport.java:163:202:SE_BAD_FIELD_INNER_CLASS -#Null_Violation_Hunk:mrniko-netty-socketio_623c9f_a0d2b1src/main/java/com/corundumstudio/socketio/transport/WebSocketTransport.java:41:41:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:mrniko-redisson_7855cd_b0822fsrc/main/java/org/redisson/connection/ClusterConnectionManager.java:159:159:UPM_UNCALLED_PRIVATE_METHOD -#Illegal_Line_Position:mrniko-redisson_925f14_2b06casrc/main/java/org/redisson/RedissonTopic.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:mrniko-redisson_f4424a_e4a325src/main/java/org/redisson/reactive/RedissonListReactive.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:mrniko-redisson_f4424a_e4a325src/main/java/org/redisson/reactive/RedissonSetReactive.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Illegal_Line_Position:msokolov-lux_019449_c246dasrc/main/java/lux/index/analysis/XmlTextTokenStream.java:-1:-1:CI_CONFUSED_INHERITANCE -#Null_Violation_Hunk:msokolov-lux_136152_d9fef1src/main/java/lux/solr/LuxUpdateProcessor.java:146:151:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:msokolov-lux_1406a5_8b7895src/main/java/lux/api/QueryStats.java:39:39:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:msokolov-lux_15677c_4588e3src/main/java/lux/index/field/PathOccurrenceField.java:32:84:SIC_INNER_SHOULD_BE_STATIC 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-#Null_Violation_Hunk:objectos-way_27a598_436bd7way-base/src/test/java/br/com/objectos/comuns/matematica/financeira/TesteDeNumeroAbstrato.java:233:243:SE_BAD_FIELD_INNER_CLASS -#Null_Violation_Hunk:objectos-way_27a598_436bd7way-base/src/test/java/br/com/objectos/comuns/matematica/financeira/TesteDeNumeroAbstrato.java:206:220:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:objectos-way_27a598_436bd7way-base/src/test/java/br/com/objectos/comuns/matematica/financeira/TesteDeNumeroAbstrato.java:233:243:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:objectos-way_27a598_436bd7way-base/src/test/java/br/com/objectos/comuns/matematica/financeira/TesteDeNumeroAbstrato.java:206:220:SE_BAD_FIELD_INNER_CLASS -#Null_Violation_Hunk:objectos-way_27a598_436bd7way-base/src/test/java/br/com/objectos/way/base/SeqNumColTest.java:68:71:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:objectos-way_27a598_436bd7way-base/src/test/java/br/com/objectos/way/base/SeqNumColTest.java:62:65:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:objectos-way_30eea0_fb1435src/main/java/br/com/objectos/way/gdrive/DriveExecValid.java:206:233:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:objectos-way_31083a_30eea0src/main/java/br/com/objectos/way/gdrive/GDrive.java:280:292:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:objectos-way_31083a_30eea0src/main/java/br/com/objectos/way/gdrive/GDrive.java:247:268:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:objectos-way_86db68_9aa1easrc/test/java/br/com/objectos/way/io/TableReaderTest.java:85:89:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:objectos-way_90e438_42fbe5src/test/java/br/com/objectos/way/io/TableReaderConverterTest.java:107:118:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:objectos-way_9a562a_69238fsrc/test/java/br/com/objectos/way/io/TableReaderTest.java:99:102:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:objectos-way_9a562a_69238fsrc/test/java/br/com/objectos/way/io/TableReaderTest.java:92:95:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:objectos-way_9cf5c6_138840src/test/java/br/com/objectos/way/io/TableReaderConverterTest.java:91:102:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:objectos-way_bada75_9737b0src/main/java/br/com/objectos/way/gdrive/GDrive.java:316:330:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:objectos-way_f06e09_dbec9asrc/main/java/br/com/objectos/way/gdrive/GDrive.java:208:222:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:oboformat-oboformat_9b4522_2ffcf2src/main/java/org/obolibrary/gui/GuiMainFrame.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:oboformat-oboformat_f60f4d_5af3ccsrc/main/java/org/obolibrary/owl/LabelFunctionalSyntaxOntologyStorer.java:21:42:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:oboformat-oboformat_f60f4d_5af3ccsrc/main/java/org/obolibrary/owl/LabelFunctionalSyntaxOntologyStorer.java:46:59:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:Omertron-api-themoviedb_0e5760_1f1054src/main/java/com/omertron/themoviedbapi/model2/media/MediaState.java:72:83:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:Omertron-api-themoviedb_0e5760_1f1054src/main/java/com/omertron/themoviedbapi/model2/media/MediaState.java:72:83:SE_INNER_CLASS -#Null_Violation_Hunk:Omertron-api-themoviedb_0e5760_1f1054src/main/java/com/omertron/themoviedbapi/model2/media/MediaState.java:72:83:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:Omertron-api-themoviedb_28c814_8e11e9src/main/java/com/omertron/themoviedbapi/model/Genre.java:28:28:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:Omertron-api-themoviedb_28c814_8e11e9src/main/java/com/omertron/themoviedbapi/model/keyword/Keyword.java:29:29:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:Omertron-api-themoviedb_28c814_8e11e9src/main/java/com/omertron/themoviedbapi/model/movie/ProductionCompany.java:29:29:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:Omertron-api-themoviedb_2ef414_1ac805src/main/java/com/omertron/themoviedbapi/model/MovieDb.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:Omertron-api-themoviedb_3e1b0f_e4dc8esrc/main/java/com/omertron/themoviedbapi/wrapper/WrapperGenericList.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:Omertron-api-themoviedb_d0ec5c_aa6bb1src/main/java/com/omertron/themoviedbapi/model2/artwork/ArtworkMedia.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Illegal_Line_Position:Omertron-api-themoviedb_e00d93_8451a4src/main/java/com/omertron/themoviedbapi/model/account/Account.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:omnifaces-omnifaces_121a37_7c1a29src/main/java/org/omnifaces/component/output/cache/el/CachingValueExpression.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:omnifaces-omnifaces_121a37_7c1a29src/main/java/org/omnifaces/taghandler/ImportConstants.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Illegal_Line_Position:omnifaces-omnifaces_15adb1_54a7f7src/main/java/org/omnifaces/component/output/Cache.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:omnifaces-omnifaces_15adb1_54a7f7src/main/java/org/omnifaces/util/FacesLocal.java:238:238:UC_USELESS_VOID_METHOD -#Illegal_Line_Position:omnifaces-omnifaces_320287_c171dcsrc/main/java/org/omnifaces/util/Events.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:omnifaces-omnifaces_320287_c171dcsrc/main/java/org/omnifaces/util/FacesLocal.java:238:238:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:omnifaces-omnifaces_35e0ae_da8459src/main/java/org/omnifaces/util/FacesLocal.java:238:238:UC_USELESS_VOID_METHOD -#Illegal_Line_Position:omnifaces-omnifaces_38d033_fedc70src/main/java/org/omnifaces/util/concurrentlinkedhashmap/ConcurrentLinkedHashMap.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:omnifaces-omnifaces_38d033_fedc70src/main/java/org/omnifaces/util/FacesLocal.java:238:238:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:omnifaces-omnifaces_449432_4a1a8dsrc/org/omnifaces/util/concurrentlinkedhashmap/ConcurrentLinkedHashMap.java:1423:1434:SE_INNER_CLASS -#Null_Violation_Hunk:omnifaces-omnifaces_475ac8_0e397csrc/org/omnifaces/util/concurrentlinkedhashmap/ConcurrentLinkedHashMap.java:1365:1376:SE_INNER_CLASS -#Null_Violation_Hunk:omnifaces-omnifaces_500019_342124src/main/java/org/omnifaces/util/FacesLocal.java:238:238:UC_USELESS_VOID_METHOD -#Illegal_Line_Position:omnifaces-omnifaces_60021d_b4850csrc/main/java/org/omnifaces/component/output/Cache.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:omnifaces-omnifaces_60021d_b4850csrc/main/java/org/omnifaces/util/FacesLocal.java:238:238:UC_USELESS_VOID_METHOD -#Illegal_Line_Position:omnifaces-omnifaces_685ab5_110570src/main/java/org/omnifaces/util/Events.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:omnifaces-omnifaces_89fa05_bf940asrc/main/java/org/omnifaces/taghandler/ValidateBean.java:381:381:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:omnifaces-omnifaces_a0884a_5e76easrc/main/java/org/omnifaces/util/FacesLocal.java:238:238:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:omnifaces-omnifaces_acebe3_54a7f7src/main/java/org/omnifaces/component/output/cache/el/CachingValueExpression.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:omnifaces-omnifaces_acebe3_54a7f7src/main/java/org/omnifaces/taghandler/ImportConstants.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Illegal_Line_Position:omnifaces-omnifaces_afb3d8_ff18bbsrc/main/java/org/omnifaces/cdi/param/ParamValue.java:-1:-1:SE_TRANSIENT_FIELD_NOT_RESTORED -#Null_Violation_Hunk:omnifaces-omnifaces_bf31d4_9c127fsrc/main/java/org/omnifaces/taghandler/ValidateBean.java:381:381:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:omnifaces-omnifaces_c67442_9fed2fsrc/main/java/org/omnifaces/util/FacesLocal.java:238:238:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:opendaylight-bgpcep_1dca38_71f45fframework/src/main/java/org/opendaylight/protocol/framework/DispatcherImpl.java:104:112:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:OpenHFT-Chronicle-Queue_0cba0d_d22551chronicle/src/main/java/net/openhft/chronicle/ChronicleQueueBuilder.java:284:292:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:OpenHFT-Chronicle-Queue_0cba0d_d22551chronicle/src/main/java/net/openhft/chronicle/ChronicleQueueBuilder.java:272:281:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:OpenHFT-Chronicle-Queue_0cba0d_d22551chronicle/src/main/java/net/openhft/chronicle/ChronicleQueueBuilder.java:261:269:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:OpenHFT-Java-Lang_0c3915_60cd7alang/src/main/java/net/openhft/lang/io/serialization/impl/ByteBufferMarshaller.java:9:44:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:OpenHFT-Java-Lang_0c3915_60cd7alang/src/main/java/net/openhft/lang/io/serialization/impl/StringZMapMarshaller.java:37:102:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:OpenHFT-Java-Lang_87816f_6053cflang/src/main/java/net/openhft/lang/io/serialization/impl/StringMarshaller.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:openpnp-openpnp_0bb975_4588ddsrc/main/java/org/openpnp/gui/MainFrame.java:-1:-1:MS_PKGPROTECT -#Null_Violation_Hunk:openpnp-openpnp_0bb975_4588ddsrc/main/java/org/openpnp/machine/reference/ReferenceJobProcessor.java:837:841:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:openpnp-openpnp_0c1eb2_b4f319src/main/java/org/openpnp/machine/reference/ReferenceJobProcessor.java:837:841:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:openpnp-openpnp_102408_27cac9src/main/java/org/openpnp/machine/reference/ReferenceJobProcessor.java:837:841:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:openpnp-openpnp_357d57_18c1c1src/main/java/org/openpnp/model/Placement.java:-1:-1:UWF_NULL_FIELD -#Illegal_Line_Position:openpnp-openpnp_4a4d3c_6a9a72src/main/java/org/openpnp/gui/MainFrame.java:-1:-1:MS_PKGPROTECT -#Null_Violation_Hunk:openpnp-openpnp_5314b9_71899dsrc/main/java/org/openpnp/machine/reference/ReferenceJobProcessor.java:837:841:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:openpnp-openpnp_6a9a72_5c5eb0src/main/java/org/openpnp/gui/MainFrame.java:-1:-1:MS_PKGPROTECT -#Illegal_Line_Position:openpnp-openpnp_98d022_0bb975src/main/java/org/openpnp/gui/MainFrame.java:-1:-1:MS_PKGPROTECT -#Illegal_Line_Position:openpnp-openpnp_98d022_0bb975src/main/java/org/openpnp/model/Placement.java:-1:-1:UWF_NULL_FIELD -#Illegal_Line_Position:openpnp-openpnp_9f6532_800eecsrc/main/java/org/openpnp/gui/MainFrame.java:-1:-1:MS_CANNOT_BE_FINAL -#Illegal_Line_Position:openpnp-openpnp_ba1f6c_4550e9src/main/java/org/openpnp/gui/MainFrame.java:-1:-1:MS_PKGPROTECT -#Illegal_Line_Position:openpnp-openpnp_c831ea_2fb767src/main/java/org/openpnp/model/Placement.java:-1:-1:UWF_NULL_FIELD -#Null_Violation_Hunk:openpnp-openpnp_fb0a3e_b18889src/main/java/org/openpnp/machine/reference/ReferenceJobProcessor.java:837:841:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:openspim-SPIMAcquisition_6c55a0_0a7274src/main/java/spim/algorithm/AbstractAntiDrift.java:29:29:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Illegal_Line_Position:openspim-SPIMAcquisition_89ef59_6a6ccasrc/main/java/spim/SPIMAcquisition.java:-1:-1:UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:openspim-SPIMAcquisition_9697f3_69fdafsrc/main/java/spim/algorithm/AbstractAntiDrift.java:29:29:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Illegal_Line_Position:openspim-SPIMAcquisition_9d1cee_38886csrc/main/java/spim/SPIMAcquisition.java:-1:-1:UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD -#Illegal_Line_Position:OpenTreeOfLife-taxomachine_0c184a_ea3d70src/main/java/opentree/tnrs/adaptersupport/gnr/GNRMatch.java:-1:-1:UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD -#Illegal_Line_Position:OpenTreeOfLife-taxomachine_0c184a_ea3d70src/main/java/opentree/tnrs/TNRSMatchSet.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:OpenTreeOfLife-taxomachine_25f38c_05e43dsrc/main/java/opentree/TaxonomyBase.java:44:44:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:OpenTreeOfLife-taxomachine_453340_2bcfffsrc/main/java/opentree/tnrs/TNRSQuery.java:180:233:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:OpenTreeOfLife-taxomachine_70d238_fbfd49src/main/java/opentree/TaxonomyBase.java:-1:-1:MS_PKGPROTECT -#Illegal_Line_Position:OpenTreeOfLife-taxomachine_70d238_fbfd49src/main/java/opentree/TaxonomyBase.java:-1:-1:MS_SHOULD_BE_FINAL -#Null_Violation_Hunk:OpenTreeOfLife-taxomachine_70d238_fbfd49src/main/java/opentree/TaxonomyBase.java:41:41:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:OpenTreeOfLife-taxomachine_70d238_fbfd49src/main/java/opentree/TaxonomyBase.java:40:40:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Illegal_Line_Position:OpenTreeOfLife-taxomachine_75ab8c_16020fsrc/main/java/opentree/TaxonomyBase.java:-1:-1:MS_PKGPROTECT -#Illegal_Line_Position:OpenTreeOfLife-treemachine_018d88_aa97f6src/main/java/opentree/GraphInitializer.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:OpenTreeOfLife-treemachine_233d25_9e1becsrc/main/java/opentree/GraphImporter.java:1407:1407:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:OpenTreeOfLife-treemachine_59abce_534fd5src/main/java/opentree/plugins/PhylografterUpdater.java:24:24:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:OpenTreeOfLife-treemachine_5bb246_fab7c3src/main/java/opentree/TaxonomyBase.java:46:46:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:OpenTreeOfLife-treemachine_9e0b65_cc5fbbsrc/main/java/opentree/GraphImporter.java:1108:1108:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:OpenTreeOfLife-treemachine_c327ed_a23920src/main/java/opentree/plugins/PhylografterUpdater.java:24:24:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:optimizationBenchmarking-optimizationBenchmarking_66efb9_3349dfsrc/main/java/org/optimizationBenchmarking/utils/math/fitting/impl/opti/OptiFittingJob.java:138:148:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:optimizationBenchmarking-optimizationBenchmarking_6d438b_f1a471src/main/java/examples/org/optimizationBenchmarking/utils/graphics/GraphicsExample.java:30:30:MS_MUTABLE_ARRAY -#Null_Violation_Hunk:optimizationBenchmarking-optimizationBenchmarking_a69592_ba6923src/main/java/org/optimizationBenchmarking/experimentation/attributes/clusters/behavior/_BehaviorCluster.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:optimizationBenchmarking-optimizationBenchmarking_c212b7_6ede13src/main/java/org/optimizationBenchmarking/utils/math/fitting/impl/opti/OptiFittingJob.java:147:157:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:optimizationBenchmarking-optimizationBenchmarking_e82438_dad893src/main/java/org/optimizationBenchmarking/experimentation/data/impl/delegates/DelegatingRun.java:95:95:URF_UNREAD_FIELD -#Null_Violation_Hunk:optimizationBenchmarking-optimizationBenchmarking_f1a471_0e1bb2src/main/java/examples/org/optimizationBenchmarking/utils/graphics/GraphicsExample.java:32:32:MS_MUTABLE_ARRAY -#Illegal_Line_Position:osiam-connector4java_f39219_110a35src/main/java/org/osiam/client/query/metamodel/Group_.java:-1:-1:UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD -#Illegal_Line_Position:osiam-connector4java_f39219_110a35src/main/java/org/osiam/client/query/metamodel/User_.java:-1:-1:UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ovgu-ccd-jchess_033a9a_1f173djchess/gui/GameTab.java:128:128:UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ovgu-ccd-jchess_033a9a_e1c0c3jchess/Player.java:66:67:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:ovgu-ccd-jchess_033a9a_e1c0c3jchess/Player.java:58:61:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:ovgu-ccd-jchess_0831a9_0eeed9jchess/gui/BoardView.java:146:146:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:ovgu-ccd-jchess_08edcb_5a15bejchess/Moves.java:51:52:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:ovgu-ccd-jchess_08edcb_5a15bejchess/Player.java:33:35:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:ovgu-ccd-jchess_15d366_e595f7jchess/Moves.java:57:59:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:ovgu-ccd-jchess_15d366_e595f7jchess/Player.java:34:37:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:ovgu-ccd-jchess_15d366_e595f7jchess/Player.java:41:44:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:ovgu-ccd-jchess_15d366_e595f7jchess/Settings.java:41:44:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:ovgu-ccd-jchess_15d366_e595f7jchess/Settings.java:50:53:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:ovgu-ccd-jchess_17eeb8_3517dbjchess/gui/GameTab.java:128:128:UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ovgu-ccd-jchess_191416_0831a9jchess/gui/GameTab.java:128:128:UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:ovgu-ccd-jchess_2aa025_eedf50jchess/Moves.java:55:56:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:ovgu-ccd-jchess_2aa025_eedf50jchess/Settings.java:48:50:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:ovgu-ccd-jchess_2aa025_eedf50jchess/Settings.java:40:42:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:ovgu-ccd-jchess_309f93_d5a6c5jchess/Moves.java:55:56:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:ovgu-ccd-jchess_309f93_d5a6c5jchess/Settings.java:48:50:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:ovgu-ccd-jchess_309f93_d5a6c5jchess/Settings.java:40:42:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:ovgu-ccd-jchess_6e0464_273695jchess/Player.java:66:67:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:ovgu-ccd-jchess_6e0464_273695jchess/Player.java:58:61:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:ovgu-ccd-jchess_77796f_679f5djchess/gui/GameTab.java:128:128:UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD -#Illegal_Line_Position:ovgu-ccd-jchess_77796f_679f5djchess/gui/JChessTabbedPane.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:ovgu-ccd-jchess_accad2_956deejchess/tests/game/MoveTest.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:ovgu-ccd-jchess_adfe39_d8d917jchess/gui/GameTab.java:128:128:UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD -#Illegal_Line_Position:ovgu-ccd-jchess_be45d3_c60cdcjchess/Game.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:ovgu-ccd-jchess_c3f4a0_bdca7bjchess/util/PixelCoordinateNotOnBoardException.java:6:6:NM_CLASS_NOT_EXCEPTION -#Null_Violation_Hunk:ovgu-ccd-jchess_cd1f73_c12258jchess/Moves.java:55:56:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:ovgu-ccd-jchess_cd1f73_c12258jchess/Settings.java:40:42:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:ovgu-ccd-jchess_cd1f73_c12258jchess/Settings.java:48:50:NM_CLASS_NAMING_CONVENTION -#Illegal_Line_Position:ovgu-ccd-jchess_e1f7fd_117abajchess/Game.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:ovgu-ccd-jchess_e4ff68_4cbaa5jchess/Game.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:owlcs-owlapi_09174b_38e827api/src/main/java/org/semanticweb/owlapi/profiles/OWL2QLProfile.java:351:387:SE_INNER_CLASS -#Null_Violation_Hunk:owlcs-owlapi_09174b_38e827api/src/main/java/org/semanticweb/owlapi/profiles/OWL2RLProfile.java:356:415:SE_INNER_CLASS -#Null_Violation_Hunk:owlcs-owlapi_09174b_38e827api/src/main/java/org/semanticweb/owlapi/profiles/OWL2RLProfile.java:288:345:SE_INNER_CLASS -#Null_Violation_Hunk:owlcs-owlapi_09174b_38e827api/src/main/java/org/semanticweb/owlapi/util/HornAxiomVisitorEx.java:244:285:SE_INNER_CLASS -#Null_Violation_Hunk:owlcs-owlapi_09174b_38e827api/src/main/java/org/semanticweb/owlapi/util/HornAxiomVisitorEx.java:187:240:SE_INNER_CLASS -#Illegal_Line_Position:owlcs-owlapi_0b2270_b20fe9oboformat/src/main/java/org/obolibrary/oboformat/writer/OBOFormatWriter.java:-1:-1:CI_CONFUSED_INHERITANCE -#Null_Violation_Hunk:owlcs-owlapi_0b8d35_8e556coboformat/src/main/java/org/obolibrary/oboformat/parser/OBOFormatParser.java:44:162:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:owlcs-owlapi_0b8d35_8e556coboformat/src/main/java/org/obolibrary/owl/LabelFunctionalFormat.java:13:13:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_101e91_621073parsers/src/main/java/org/coode/owlapi/latex/LatexAxiomsListOntologyFormat.java:49:53:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_112983_d13ce3tools/src/main/java/uk/ac/manchester/cs/owl/explanation/ordering/ExplanationOrdererImpl.java:373:385:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:owlcs-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/formats/BinaryRdfOntologyFormatFactory.java:12:28:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/formats/N3OntologyFormatFactory.java:12:23:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/formats/NQuadsOntologyFormatFactory.java:12:23:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/formats/NTriplesOntologyFormatFactory.java:12:23:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/formats/RdfJsonOntologyFormatFactory.java:12:20:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/formats/RDFXMLOntologyFormatFactory.java:12:23:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/formats/TrigOntologyFormatFactory.java:12:23:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/formats/TrixOntologyFormatFactory.java:12:23:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/formats/TurtleOntologyFormatFactory.java:11:22:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/rio/RioBinaryRdfOntologyStorerFactory.java:48:64:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/rio/RioBinaryRdfParserFactory.java:46:51:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/rio/RioJsonOntologyStorerFactory.java:48:64:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/rio/RioJsonParserFactory.java:49:55:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/rio/RioN3OntologyStorerFactory.java:48:63:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/rio/RioN3ParserFactory.java:49:55:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/rio/RioNQuadsOntologyStorerFactory.java:48:64:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/rio/RioNQuadsParserFactory.java:49:55:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/rio/RioNTriplesOntologyStorerFactory.java:48:64:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/rio/RioNTriplesParserFactory.java:49:55:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/rio/RioRDFXMLOntologyStorerFactory.java:48:64:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/rio/RioRDFXMLParserFactory.java:49:55:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/rio/RioTrigOntologyStorerFactory.java:48:64:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/rio/RioTrigParserFactory.java:49:55:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/rio/RioTrixOntologyStorerFactory.java:48:64:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/rio/RioTrixParserFactory.java:49:55:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/rio/RioTurtleOntologyStorerFactory.java:50:67:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_206a4c_8c0ef9rio/src/main/java/org/semanticweb/owlapi/rio/RioTurtleParserFactory.java:47:52:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:owlcs-owlapi_3221dd_f67b95oboformat/src/main/java/org/obolibrary/oboformat/writer/OBOFormatWriter.java:-1:-1:CI_CONFUSED_INHERITANCE -#Null_Violation_Hunk:owlcs-owlapi_3ce0c8_72a28fparsers/src/main/java/de/uulm/ecs/ai/owlapi/krssparser/KRSS2OWLParserFactory.java:48:51:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_4defcc_e501ebapi/src/main/java/org/semanticweb/owlapi/io/OWLParserFactoryImpl.java:14:31:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_4defcc_e501ebapi/src/main/java/org/semanticweb/owlapi/util/OWLOntologyStorerFactoryImpl.java:33:52:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_4defcc_e501ebrio/src/main/java/org/semanticweb/owlapi/rio/RioBinaryRdfOntologyStorerFactory.java:49:59:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_4defcc_e501ebrio/src/main/java/org/semanticweb/owlapi/rio/RioJsonOntologyStorerFactory.java:49:59:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_4defcc_e501ebrio/src/main/java/org/semanticweb/owlapi/rio/RioN3OntologyStorerFactory.java:49:58:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_4defcc_e501ebrio/src/main/java/org/semanticweb/owlapi/rio/RioNQuadsOntologyStorerFactory.java:49:59:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_4defcc_e501ebrio/src/main/java/org/semanticweb/owlapi/rio/RioNTriplesOntologyStorerFactory.java:49:59:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_4defcc_e501ebrio/src/main/java/org/semanticweb/owlapi/rio/RioRDFXMLOntologyStorerFactory.java:49:59:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_4defcc_e501ebrio/src/main/java/org/semanticweb/owlapi/rio/RioTrigOntologyStorerFactory.java:49:59:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_4defcc_e501ebrio/src/main/java/org/semanticweb/owlapi/rio/RioTrixOntologyStorerFactory.java:49:59:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_4defcc_e501ebrio/src/main/java/org/semanticweb/owlapi/rio/RioTurtleOntologyStorerFactory.java:51:61:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_570cfa_93df9fimpl/src/main/java/uk/ac/manchester/cs/owl/owlapi/OWLOntologyBuilderImpl.java:50:54:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_621073_07de69parsers/src/main/java/org/coode/owl/krssparser/KRSSOntologyFormat.java:48:51:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_621073_07de69parsers/src/main/java/org/coode/owlapi/latex/LatexOntologyFormat.java:48:51:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_621073_07de69parsers/src/main/java/uk/ac/manchester/cs/owlapi/dlsyntax/DLSyntaxHTMLOntologyFormat.java:48:51:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_621073_07de69parsers/src/main/java/uk/ac/manchester/cs/owlapi/dlsyntax/DLSyntaxOntologyFormat.java:48:51:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_70efa7_d41db2tools/src/main/java/com/clarkparsia/owlapi/modularity/locality/SyntacticLocalityEvaluator.java:1258:1258:NP_NONNULL_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:owlcs-owlapi_70efa7_d41db2tools/src/main/java/com/clarkparsia/owlapi/modularity/locality/SyntacticLocalityEvaluator.java:878:878:NP_NONNULL_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:owlcs-owlapi_743e4c_8a6a56impl/src/main/java/uk/ac/manchester/cs/owl/owlapi/Internals.java:103:137:SE_INNER_CLASS -#Null_Violation_Hunk:owlcs-owlapi_743e4c_8a6a56impl/src/main/java/uk/ac/manchester/cs/owl/owlapi/Internals.java:1657:1691:SE_INNER_CLASS -#Null_Violation_Hunk:owlcs-owlapi_777b3e_7b036eimpl/src/main/java/uk/ac/manchester/cs/owl/owlapi/Internals.java:94:128:SE_INNER_CLASS -#Illegal_Line_Position:owlcs-owlapi_9c42ae_2fab17parsers/src/main/java/org/coode/owlapi/functionalparser/OWLFunctionalSyntaxParser.java:-1:-1:UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD -#Illegal_Line_Position:owlcs-owlapi_b46875_8df833impl/src/main/java/uk/ac/manchester/cs/owl/owlapi/OWLOntologyManagerImpl.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:owlcs-owlapi_b4ba8c_e696d4api/src/main/java/org/semanticweb/owlapi/io/RDFParserMetaData.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:owlcs-owlapi_b4ba8c_e696d4api/src/main/java/org/semanticweb/owlapi/util/DefaultPrefixManager.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:owlcs-owlapi_b4ba8c_e696d4api/src/main/java/org/semanticweb/owlapi/util/HasPriorityComparator.java:29:45:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Illegal_Line_Position:owlcs-owlapi_b4ba8c_e696d4api/src/main/java/org/semanticweb/owlapi/util/HornAxiomVisitorEx.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:owlcs-owlapi_b4ba8c_e696d4api/src/main/java/org/semanticweb/owlapi/util/OWLEntityComparator.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:owlcs-owlapi_b4ba8c_e696d4impl/src/main/java/uk/ac/manchester/cs/owl/owlapi/Internals.java:132:162:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:owlcs-owlapi_b4ba8c_e696d4impl/src/main/java/uk/ac/manchester/cs/owl/owlapi/Internals.java:132:162:SE_INNER_CLASS -#Illegal_Line_Position:owlcs-owlapi_b4ba8c_e696d4impl/src/main/java/uk/ac/manchester/cs/owl/owlapi/MapPointer.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:owlcs-owlapi_b4ba8c_e696d4impl/src/main/java/uk/ac/manchester/cs/owl/owlapi/OWLOntologyManagerImpl.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:owlcs-owlapi_b4ba8c_e696d4impl/src/main/java/uk/ac/manchester/cs/owl/owlapi/SWRLRuleImpl.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:owlcs-owlapi_b4ba8c_e696d4rio/src/main/java/org/semanticweb/owlapi/formats/RioRDFOntologyFormat.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:owlcs-owlapi_b4ba8c_e696d4rio/src/main/java/org/semanticweb/owlapi/rio/RioOntologyStorer.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:owlcs-owlapi_b4ba8c_e696d4rio/src/main/java/org/semanticweb/owlapi/rio/RioParserImpl.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:owlcs-owlapi_b4ba8c_e696d4tools/src/main/java/uk/ac/manchester/cs/owl/explanation/ordering/ExplanationOrdererImpl.java:358:371:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:owlcs-owlapi_b5388d_2898c6impl/src/main/java/uk/ac/manchester/cs/owl/owlapi/SWRLRuleImpl.java:254:317:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:owlcs-owlapi_d1df2f_a1f918parsers/src/main/java/org/semanticweb/owlapi/rdf/turtle/parser/TurtleParser.java:-1:-1:UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:owlcs-owlapi_e14abb_cc74b3parsers/src/main/java/org/semanticweb/owlapi/rdf/RDFRendererBase.java:568:581:SIC_INNER_SHOULD_BE_STATIC_NEEDS_THIS -#Illegal_Line_Position:owlcs-owlapi_e15cc9_4cd590oboformat/src/main/java/org/coode/owlapi/oboformat/OBOFormatRenderer.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:owlcs-owlapi_e16e3b_b4ba8cimpl/src/main/java/uk/ac/manchester/cs/owl/owlapi/Internals.java:1353:1387:SE_INNER_CLASS -#Null_Violation_Hunk:owlcs-owlapi_e3c497_ce87baimpl/src/main/java/uk/ac/manchester/cs/owl/owlapi/Internals.java:94:128:SE_INNER_CLASS -#Null_Violation_Hunk:owlcs-owlapi_e3c497_ce87batools/src/main/java/com/clarkparsia/owlapi/modularity/locality/SyntacticLocalityEvaluator.java:878:878:NP_NONNULL_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:owlcs-owlapi_e3c497_ce87batools/src/main/java/com/clarkparsia/owlapi/modularity/locality/SyntacticLocalityEvaluator.java:1258:1258:NP_NONNULL_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:owlcs-owlapi_e7634e_edbdc7parsers/src/main/java/org/coode/owl/krssparser/KRSSOntologyFormat.java:51:55:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_e7634e_edbdc7parsers/src/main/java/org/coode/owlapi/latex/LatexAxiomsListOntologyFormat.java:52:58:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:owlcs-owlapi_e7634e_edbdc7parsers/src/main/java/org/coode/owlapi/latex/LatexOntologyFormat.java:51:56:SE_NO_SERIALVERSIONID 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-#Illegal_Line_Position:protegeproject-swrlapi_c5c1a9_4afae3src/main/java/org/swrlapi/ui/controller/SWRLAPIApplicationController.java:-1:-1:UWF_NULL_FIELD -#Null_Violation_Hunk:protegeproject-swrlapi_cbd2f3_0cfd7asrc/main/java/org/swrlapi/ui/dialog/SWRLRuleEditorDialog.java:348:361:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:protegeproject-swrlapi_cd352f_ec8d90src/main/java/org/swrlapi/core/arguments/impl/SWRLBuiltInArgumentImpl.java:23:23:EQ_COMPARETO_USE_OBJECT_EQUALS -#Null_Violation_Hunk:rage-tmc-cli_08d1a9_f8c7e1src/main/java/hy/tmc/cli/Configuration/ConfigurationParser.java:15:15:UC_USELESS_VOID_METHOD -#Illegal_Line_Position:rage-tmc-cli_1dab81_d146d1src/main/java/hy/tmc/cli/frontend/communication/commands/Command.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:rage-tmc-cli_38131b_341296src/main/java/hy/tmc/cli/frontend/communication/commands/Command.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:rage-tmc-cli_58c9c2_445251src/main/java/hy/tmc/cli/Configuration/ConfigurationParser.java:15:15:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:rage-tmc-cli_990fc3_2a5e08src/main/java/hy/tmc/cli/Configuration/ConfigurationParser.java:15:15:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:rage-tmc-cli_aedb12_0948ccsrc/main/java/hy/tmc/cli/Configuration/ConfigurationParser.java:15:15:UC_USELESS_VOID_METHOD -#Illegal_Line_Position:rage-tmc-cli_b18a6f_fb2466src/main/java/hy/tmc/cli/frontend/communication/commands/Command.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:rage-tmc-cli_b1cc26_f92075src/main/java/hy/tmc/cli/frontend/communication/server/Server.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:rage-tmc-cli_b4250f_6e63d7src/main/java/hy/tmc/cli/Configuration/ConfigurationParser.java:15:15:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:rage-tmc-cli_c9abd4_99947dsrc/main/java/hy/tmc/cli/Configuration/ConfigurationParser.java:15:15:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:rage-tmc-cli_d6ee70_54f64bsrc/main/java/hy/tmc/cli/frontend/communication/commands/AnswerQuestion.java:18:18:UC_USELESS_VOID_METHOD -#Illegal_Line_Position:rage-tmc-cli_f7c957_817857src/main/java/hy/tmc/cli/frontend/communication/commands/Command.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:rasto-lcmc_07b20c_656559src/main/java/lcmc/gui/resources/CRMInfo.java:-1:-1:CI_CONFUSED_INHERITANCE -#Illegal_Line_Position:rasto-lcmc_19ace1_647956src/main/java/lcmc/view/MainPanel.java:-1:-1:SE_TRANSIENT_FIELD_NOT_RESTORED -#Illegal_Line_Position:rasto-lcmc_227005_94d58esrc/main/java/lcmc/LCMC.java:-1:-1:MS_CANNOT_BE_FINAL -#Null_Violation_Hunk:rasto-lcmc_2a09b8_a306f7src/main/java/lcmc/data/ResourceAgent.java:229:229:MS_MUTABLE_COLLECTION -#Null_Violation_Hunk:rasto-lcmc_3d1fdc_3a5057src/main/java/lcmc/data/ResourceAgent.java:254:254:MS_MUTABLE_COLLECTION -#Null_Violation_Hunk:rasto-lcmc_46525d_e8647asrc/main/java/lcmc/gui/resources/drbd/BlockDevInfo.java:75:75:EQ_COMPARETO_USE_OBJECT_EQUALS -#Null_Violation_Hunk:rasto-lcmc_4f8fe0_4972fdsrc/main/java/lcmc/data/crm/ResourceAgent.java:235:235:MS_MUTABLE_COLLECTION -#Illegal_Line_Position:rasto-lcmc_572003_d18cdcsrc/main/java/lcmc/gui/resources/drbd/HostDrbdMenu.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:rasto-lcmc_671682_cf908fsrc/main/java/lcmc/data/ResourceAgent.java:254:254:MS_MUTABLE_COLLECTION -#Illegal_Line_Position:rasto-lcmc_672912_cd9023src/main/java/lcmc/gui/resources/CRMInfo.java:-1:-1:CI_CONFUSED_INHERITANCE -#Null_Violation_Hunk:rasto-lcmc_8304e7_13e5efsrc/main/java/lcmc/data/ResourceAgent.java:254:254:MS_MUTABLE_COLLECTION -#Null_Violation_Hunk:rasto-lcmc_8f01ea_1a0fdbsrc/main/java/lcmc/utilities/CRM.java:505:505:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:rasto-lcmc_962320_be315asrc/main/java/lcmc/data/ResourceAgent.java:254:254:MS_MUTABLE_COLLECTION -#Null_Violation_Hunk:rasto-lcmc_a7583a_5d4d00src/main/java/lcmc/data/crm/ResourceAgent.java:236:236:MS_MUTABLE_COLLECTION -#Null_Violation_Hunk:rasto-lcmc_aeaac1_4b3831src/main/java/lcmc/gui/resources/drbd/BlockDevInfo.java:79:79:EQ_COMPARETO_USE_OBJECT_EQUALS -#Null_Violation_Hunk:rasto-lcmc_fbc427_562545src/main/java/lcmc/data/ResourceAgent.java:254:254:MS_MUTABLE_COLLECTION -#Null_Violation_Hunk:Razz0991-Minigames_6451fb_edd374Minigames/src/au/com/mineauz/minigames/Minigames.java:25:25:MS_CANNOT_BE_FINAL -#Null_Violation_Hunk:Razz0991-Minigames_ed57f0_50486bMinigames/src/au/com/mineauz/minigames/Minigames.java:25:25:MS_CANNOT_BE_FINAL -#Null_Violation_Hunk:Razz0991-Minigames_f136d5_b93528Minigames/src/au/com/mineauz/minigames/minigame/reward/scheme/ScoreRewardScheme.java:219:329:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:Razz0991-Minigames_f18777_b8ef5aMinigames/src/au/com/mineauz/minigames/Minigames.java:14:14:MS_CANNOT_BE_FINAL -#Null_Violation_Hunk:Razz0991-Minigames_fce53f_32c059Minigames/src/au/com/mineauz/minigames/Minigames.java:23:23:MS_CANNOT_BE_FINAL -#Illegal_Line_Position:reinert-requestor_8549b0_505029src/main/java/io/reinert/requestor/RequestProgress.java:-1:-1:NM_SAME_SIMPLE_NAME_AS_INTERFACE -#Null_Violation_Hunk:relayrides-pushy_3b384b_81ed0asrc/main/java/com/relayrides/pushy/apns/FeedbackServiceConnection.java:132:153:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:relayrides-pushy_68cc13_69f470src/main/java/com/relayrides/pushy/apns/FeedbackServiceClient.java:119:135:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:relayrides-pushy_cea7c3_fb232asrc/main/java/com/relayrides/pushy/apns/FeedbackServiceClient.java:119:130:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:relayrides-pushy_d20104_f5cbaasrc/main/java/com/relayrides/pushy/apns/FeedbackServiceClient.java:120:131:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:relayrides-pushy_e3658a_d05082src/main/java/com/relayrides/pushy/apns/FeedbackServiceConnection.java:136:185:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:relayrides-pushy_f79d6f_43c96bsrc/main/java/com/relayrides/pushy/apns/FeedbackConnection.java:124:149:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:renepickhardt-generalized-language-modeling-toolkit_7f97b8_d8e140src/de/typology/splitter/DataSetSplitter.java:-1:-1:UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD -#Illegal_Line_Position:renepickhardt-generalized-language-modeling-toolkit_92c300_15e6absrc/de/typology/smoother/KneserNeyResultAggregator.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:renepickhardt-generalized-language-modeling-toolkit_9f7c43_6890f4src/main/java/de/typology/executables/Glmtk.java:42:47:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:renepickhardt-generalized-language-modeling-toolkit_9f7c43_6890f4src/main/java/de/typology/executables/GlmtkCount.java:106:111:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:renepickhardt-generalized-language-modeling-toolkit_a3dfa3_35f28csrc/main/java/de/typology/utils/Config.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Illegal_Line_Position:renepickhardt-generalized-language-modeling-toolkit_b97586_0e78a5src/de/typology/splitter/SplitterTask.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:renepickhardt-generalized-language-modeling-toolkit_bd49fa_be7c03src/main/java/de/glmtk/querying/probability/QueryCacherCreator.java:58:58:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:renepickhardt-generalized-language-modeling-toolkit_c5e8c8_684562src/de/typology/splitter/Sequencer.java:36:36:UC_USELESS_VOID_METHOD -#Illegal_Line_Position:renepickhardt-generalized-language-modeling-toolkit_d8e140_4ccd9dsrc/de/typology/utils/Config.java:-1:-1:MS_SHOULD_BE_FINAL -#Null_Violation_Hunk:renepickhardt-generalized-language-modeling-toolkit_e5e598_726e21src/de/typology/utilsOld/Config.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Illegal_Line_Position:renepickhardt-generalized-language-modeling-toolkit_fda5b9_271ddfsrc/de/typology/smoother/KneserNeyResultAggregator.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:Requinard-TeamTab_6fc0b8_e25afbsrc/main/java/Game/Instruction.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:Requinard-TeamTab_6fc0b8_e25afbsrc/main/java/Game/Team.java:57:57:UC_USELESS_VOID_METHOD -#Illegal_Line_Position:Requinard-TeamTab_add6b1_616f86src/main/java/Game/Instruction.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:rhuss-docker-maven-plugin_026ffb_65f42csrc/main/java/org/jolokia/docker/maven/AbstractDockerMojo.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:rhuss-docker-maven-plugin_060338_bb6123src/main/java/org/jolokia/docker/maven/log/LogDispatcher.java:103:141:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:rhuss-docker-maven-plugin_060338_bb6123src/main/java/org/jolokia/docker/maven/WatchMojo.java:54:54:UWF_UNWRITTEN_FIELD -#Illegal_Line_Position:rhuss-docker-maven-plugin_2d1bd9_60eb31src/main/java/org/jolokia/docker/maven/AbstractDockerMojo.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:rhuss-docker-maven-plugin_2d1bd9_60eb31src/main/java/org/jolokia/docker/maven/assembly/DockerFileBuilder.java:116:129:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:rhuss-docker-maven-plugin_376b8c_a47eeasrc/main/java/org/jolokia/docker/maven/config/AssemblyConfiguration.java:128:128:UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD -#Illegal_Line_Position:rhuss-docker-maven-plugin_3b4574_670e55src/main/java/org/jolokia/docker/maven/config/WatchConfiguration.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:rhuss-docker-maven-plugin_65f42c_8c423asrc/main/java/org/jolokia/docker/maven/BuildMojo.java:-1:-1:MF_CLASS_MASKS_FIELD -#Null_Violation_Hunk:rhuss-docker-maven-plugin_786ebd_e5f01asrc/main/java/org/jolokia/docker/maven/WatchMojo.java:53:53:UWF_UNWRITTEN_FIELD -#Null_Violation_Hunk:rhuss-docker-maven-plugin_84a19b_0ae55asrc/main/java/org/jolokia/docker/maven/log/LogDispatcher.java:103:141:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:rhuss-docker-maven-plugin_84a19b_0ae55asrc/main/java/org/jolokia/docker/maven/WatchMojo.java:54:54:UWF_UNWRITTEN_FIELD -#Null_Violation_Hunk:rhuss-docker-maven-plugin_a66547_f7829csrc/main/java/org/jolokia/docker/maven/config/AssemblyConfiguration.java:128:128:UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD -#Illegal_Line_Position:rhuss-docker-maven-plugin_b6fca4_670e55src/main/java/org/jolokia/docker/maven/config/WatchConfiguration.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:rhuss-docker-maven-plugin_bb97f1_f236dasrc/main/java/org/jolokia/docker/maven/WatchMojo.java:53:53:UWF_UNWRITTEN_FIELD -#Null_Violation_Hunk:rhuss-docker-maven-plugin_d33bc9_895828src/main/java/org/jolokia/docker/maven/WatchMojo.java:58:58:UWF_UNWRITTEN_FIELD -#Null_Violation_Hunk:rhuss-docker-maven-plugin_e0e618_ab3f52src/main/java/org/jolokia/docker/maven/WatchMojo.java:52:52:UWF_UNWRITTEN_FIELD -#Illegal_Line_Position:rhuss-docker-maven-plugin_e4ae7d_8a32c5src/main/java/org/jolokia/docker/maven/config/RunImageConfiguration.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:rhuss-docker-maven-plugin_ebf8c9_1230a2src/main/java/org/jolokia/maven/docker/assembly/DockerFileBuilder.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:rhuss-docker-maven-plugin_ebf8c9_1230a2src/main/java/org/jolokia/maven/docker/StartMojo.java:128:128:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:rhuss-docker-maven-plugin_f8e572_8c800csrc/main/java/org/jolokia/docker/maven/log/LogDispatcher.java:113:144:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:rhuss-docker-maven-plugin_f8e572_8c800csrc/main/java/org/jolokia/docker/maven/WatchMojo.java:52:52:UWF_UNWRITTEN_FIELD -#Null_Violation_Hunk:rinde-RinSim_0365b7_afe859central/src/test/java/com/github/rinde/rinsim/central/rt/RtSolverModelTest.java:67:67:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:rinde-RinSim_d59ab7_947d5aexperiment-base/src/main/java/com/github/rinde/rinsim/experiment/base/DefaultScenario.java:25:25:EQ_COMPARETO_USE_OBJECT_EQUALS -#Illegal_Line_Position:rinde-RinSim_d59ab7_947d5aexperiment-base/src/test/java/com/github/rinde/rinsim/experiment/base/ExperimentTest.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:rinde-RinSim_d59ab7_947d5aexperiment-base/src/test/java/com/github/rinde/rinsim/experiment/base/ExperimentTest.java:161:161:EQ_COMPARETO_USE_OBJECT_EQUALS -#Null_Violation_Hunk:rinde-RinSim_d59ab7_947d5aexperiment-base/src/test/java/com/github/rinde/rinsim/experiment/base/ExperimentTest.java:146:157:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:roberth-pitest_329fb0_ca4f4csrc/main/java/org/pitest/junit/RunnerAdapterTestUnit.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:robovm-robovm_23cfac_a20267cocoatouch/src/main/java/org/robovm/apple/uikit/UIFontDescriptorAttribute.java:-1:-1:NM_FIELD_NAMING_CONVENTION -#Illegal_Line_Position:robovm-robovm_23cfac_a20267cocoatouch/src/main/java/org/robovm/apple/uikit/UIFontTextStyle.java:-1:-1:NM_FIELD_NAMING_CONVENTION -#Null_Violation_Hunk:robovm-robovm_2c4699_aeff73cocoatouch/src/main/java/org/robovm/apple/mediatoolbox/MTAudioProcessingTap.java:60:60:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:robovm-robovm_395c01_9ad1adcocoatouch/src/main/java/org/robovm/apple/mediatoolbox/MTAudioProcessingTap.java:60:60:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:robovm-robovm_640595_6fe06ecocoatouch/src/main/java/org/robovm/apple/uikit/UIFontDescriptorAttribute.java:-1:-1:NM_FIELD_NAMING_CONVENTION -#Illegal_Line_Position:robovm-robovm_640595_6fe06ecocoatouch/src/main/java/org/robovm/apple/uikit/UIFontTextStyle.java:-1:-1:NM_FIELD_NAMING_CONVENTION -#Null_Violation_Hunk:robovm-robovm_d0e478_b0cfe1cocoatouch/src/main/java/org/robovm/apple/mediatoolbox/MTAudioProcessingTap.java:60:60:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:robovm-robovm_e96bf5_17e813cocoatouch/src/main/java/org/robovm/apple/uikit/UIFontDescriptorAttribute.java:-1:-1:NM_FIELD_NAMING_CONVENTION -#Illegal_Line_Position:robovm-robovm_e96bf5_17e813cocoatouch/src/main/java/org/robovm/apple/uikit/UIFontTextStyle.java:-1:-1:NM_FIELD_NAMING_CONVENTION -#Null_Violation_Hunk:roundrop-facebook4j_1760cd_7789f6facebook4j-core/src/main/java/facebook4j/internal/json/InboxResponseListImpl.java:71:95:SE_INNER_CLASS -#Null_Violation_Hunk:roundrop-facebook4j_217f99_0e3521src/main/java/facebook4j/internal/json/AchievementJSONImpl.java:199:224:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:roundrop-facebook4j_217f99_0e3521src/main/java/facebook4j/internal/json/EventJSONImpl.java:181:216:SE_INNER_CLASS -#Null_Violation_Hunk:roundrop-facebook4j_217f99_0e3521src/main/java/facebook4j/internal/json/EventJSONImpl.java:181:216:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:roundrop-facebook4j_217f99_0e3521src/main/java/facebook4j/internal/json/PhotoJSONImpl.java:258:282:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:roundrop-facebook4j_217f99_0e3521src/main/java/facebook4j/internal/json/UserJSONImpl.java:582:602:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:roundrop-facebook4j_217f99_0e3521src/main/java/facebook4j/internal/json/UserJSONImpl.java:582:602:SE_INNER_CLASS -#Null_Violation_Hunk:roundrop-facebook4j_54e3ad_6e784efacebook4j-core/src/main/java/facebook4j/internal/json/InboxResponseListImpl.java:71:95:SE_INNER_CLASS -#Null_Violation_Hunk:roundrop-facebook4j_6a8c5a_e9ade1facebook4j-core/src/main/java/facebook4j/internal/json/InboxResponseListImpl.java:71:95:SE_INNER_CLASS -#Null_Violation_Hunk:roundrop-facebook4j_750f06_a11755facebook4j-core/src/main/java/facebook4j/internal/json/PhotoJSONImpl.java:326:397:SE_INNER_CLASS -#Null_Violation_Hunk:roundrop-facebook4j_844370_2ed9d8src/main/java/facebook4j/internal/json/AchievementJSONImpl.java:199:224:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:roundrop-facebook4j_844370_2ed9d8src/main/java/facebook4j/internal/json/EventJSONImpl.java:182:217:SE_INNER_CLASS -#Null_Violation_Hunk:roundrop-facebook4j_844370_2ed9d8src/main/java/facebook4j/internal/json/EventJSONImpl.java:182:217:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:roundrop-facebook4j_844370_2ed9d8src/main/java/facebook4j/internal/json/PhotoJSONImpl.java:258:282:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:roundrop-facebook4j_844370_2ed9d8src/main/java/facebook4j/internal/json/UserJSONImpl.java:582:602:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:roundrop-facebook4j_844370_2ed9d8src/main/java/facebook4j/internal/json/UserJSONImpl.java:582:602:SE_INNER_CLASS -#Null_Violation_Hunk:roundrop-facebook4j_8e1564_854230facebook4j-core/src/main/java/facebook4j/internal/json/InboxResponseListImpl.java:71:95:SE_INNER_CLASS -#Null_Violation_Hunk:roundrop-facebook4j_a3edae_6fe0f6src/main/java/facebook4j/internal/json/AchievementJSONImpl.java:199:224:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:roundrop-facebook4j_a3edae_6fe0f6src/main/java/facebook4j/internal/json/EventJSONImpl.java:181:216:SE_INNER_CLASS -#Null_Violation_Hunk:roundrop-facebook4j_a3edae_6fe0f6src/main/java/facebook4j/internal/json/EventJSONImpl.java:181:216:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:roundrop-facebook4j_a3edae_6fe0f6src/main/java/facebook4j/internal/json/PhotoJSONImpl.java:258:282:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:roundrop-facebook4j_a3edae_6fe0f6src/main/java/facebook4j/internal/json/UserJSONImpl.java:582:602:SE_INNER_CLASS -#Null_Violation_Hunk:roundrop-facebook4j_a3edae_6fe0f6src/main/java/facebook4j/internal/json/UserJSONImpl.java:582:602:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:roundrop-facebook4j_ac0dac_4d7454facebook4j-core/src/main/java/facebook4j/internal/json/InboxResponseListImpl.java:71:95:SE_INNER_CLASS -#Null_Violation_Hunk:roundrop-facebook4j_b1100f_f12070facebook4j-core/src/main/java/facebook4j/internal/json/PhotoJSONImpl.java:326:397:SE_INNER_CLASS -#Null_Violation_Hunk:roundrop-facebook4j_bd35c5_c41f35facebook4j-core/src/main/java/facebook4j/internal/json/InboxResponseListImpl.java:71:95:SE_INNER_CLASS -#Null_Violation_Hunk:roundrop-facebook4j_cbf648_331fb4facebook4j-core/src/main/java/facebook4j/internal/json/UserJSONImpl.java:875:915:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:roundrop-facebook4j_cbf648_331fb4facebook4j-core/src/main/java/facebook4j/internal/json/UserJSONImpl.java:875:915:SE_INNER_CLASS -#Null_Violation_Hunk:roundrop-facebook4j_cca35d_866e6cfacebook4j-core/src/main/java/facebook4j/internal/json/EventJSONImpl.java:212:252:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:roundrop-facebook4j_cca35d_866e6cfacebook4j-core/src/main/java/facebook4j/internal/json/EventJSONImpl.java:212:252:SE_INNER_CLASS -#Null_Violation_Hunk:roundrop-facebook4j_daf824_e6a2d0facebook4j-core/src/main/java/facebook4j/internal/json/PhotoJSONImpl.java:326:397:SE_INNER_CLASS -#Null_Violation_Hunk:roundrop-facebook4j_e6e671_7486fafacebook4j-core/src/main/java/facebook4j/internal/json/InboxResponseListImpl.java:71:95:SE_INNER_CLASS -#Null_Violation_Hunk:roundrop-facebook4j_f6e72e_628cb4src/main/java/facebook4j/internal/json/AchievementJSONImpl.java:199:224:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:roundrop-facebook4j_f6e72e_628cb4src/main/java/facebook4j/internal/json/EventJSONImpl.java:182:217:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:roundrop-facebook4j_f6e72e_628cb4src/main/java/facebook4j/internal/json/EventJSONImpl.java:182:217:SE_INNER_CLASS -#Null_Violation_Hunk:roundrop-facebook4j_f6e72e_628cb4src/main/java/facebook4j/internal/json/PhotoJSONImpl.java:258:282:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:roundrop-facebook4j_f6e72e_628cb4src/main/java/facebook4j/internal/json/UserJSONImpl.java:582:602:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:roundrop-facebook4j_f6e72e_628cb4src/main/java/facebook4j/internal/json/UserJSONImpl.java:582:602:SE_INNER_CLASS -#Null_Violation_Hunk:roundrop-facebook4j_fdad8c_d01f8ffacebook4j-core/src/main/java/facebook4j/internal/json/EventJSONImpl.java:243:305:SE_INNER_CLASS -#Null_Violation_Hunk:roundrop-facebook4j_fdad8c_d01f8ffacebook4j-core/src/main/java/facebook4j/internal/json/EventJSONImpl.java:243:305:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:rovo89-public-transport-enabler-fork_e28210_9c7150src/de/schildbach/pte/dto/QueryConnectionsResult.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:sanity-quickml_ca649e_35941csrc/main/java/quickml/supervised/tree/branchFinders/branchFinderBuilders/BranchFinderBuilder.java:28:28:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:sanity-quickml_ca649e_35941csrc/main/java/quickml/supervised/tree/branchFinders/branchFinderBuilders/BranchFinderBuilder.java:38:38:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:sannies-mp4parser_17bdd4_31ca35src/main/java/com/googlecode/mp4parser/boxes/apple/AppleCoverBox.java:86:111:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:sannies-mp4parser_2430e6_ff7ca9src/main/java/com/googlecode/mp4parser/AbstractContainerBox.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:sannies-mp4parser_5dcfde_1a931esrc/main/java/com/googlecode/mp4parser/authoring/tracks/AACTrackImpl.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:sannies-mp4parser_6e3278_d72143src/main/java/com/googlecode/mp4parser/contentprotection/PlayReadyHeader.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:sannies-mp4parser_6e3278_d72143src/main/java/com/googlecode/mp4parser/contentprotection/PlayReadyHeader.java:25:25:MS_SHOULD_BE_FINAL -#Null_Violation_Hunk:sannies-mp4parser_99f022_05cf34src/main/java/com/googlecode/mp4parser/boxes/piff/TfrfBox.java:110:129:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:sannies-mp4parser_e15acd_db53c5src/main/java/com/coremedia/iso/IsoFile.java:-1:-1:MF_CLASS_MASKS_FIELD -#Null_Violation_Hunk:sannies-mp4parser_f21047_426a25src/main/java/com/googlecode/mp4parser/boxes/cenc/CencSampleAuxiliaryDataFormat.java:45:80:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:sannies-mp4parser_fa213e_bd5e43src/main/java/com/googlecode/mp4parser/h264/model/SliceHeader.java:98:98:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:sannies-mp4parser_fa213e_bd5e43src/main/java/com/googlecode/mp4parser/h264/model/SliceHeader.java:234:234:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:sannies-mp4parser_fa213e_bd5e43src/main/java/com/googlecode/mp4parser/h264/model/SliceHeader.java:84:84:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:sannies-mp4parser_fa213e_bd5e43src/main/java/com/googlecode/mp4parser/h264/model/SliceHeader.java:101:101:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:sannies-mp4parser_fa213e_bd5e43src/main/java/com/googlecode/mp4parser/h264/model/SliceHeader.java:109:109:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:sannies-mp4parser_fa213e_bd5e43src/main/java/com/googlecode/mp4parser/h264/model/SliceHeader.java:141:141:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:sannies-mp4parser_fa213e_bd5e43src/main/java/com/googlecode/mp4parser/h264/model/SliceHeader.java:58:58:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:sannies-mp4parser_fa213e_bd5e43src/main/java/com/googlecode/mp4parser/h264/model/SliceHeader.java:66:66:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:sannies-mp4parser_fa213e_bd5e43src/main/java/com/googlecode/mp4parser/h264/model/SliceHeader.java:112:112:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:sannies-mp4parser_fa213e_bd5e43src/main/java/com/googlecode/mp4parser/h264/model/SliceHeader.java:130:130:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:sannies-mp4parser_fa213e_bd5e43src/main/java/com/googlecode/mp4parser/h264/model/SliceHeader.java:155:155:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:sannies-mp4parser_fa213e_bd5e43src/main/java/com/googlecode/mp4parser/h264/model/SliceHeader.java:139:139:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:sannies-mp4parser_fa213e_bd5e43src/main/java/com/googlecode/mp4parser/h264/model/SliceHeader.java:133:133:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Illegal_Line_Position:sboesebeck-morphium_0919e4_113020src/de/caluga/morphium/ConfigElement.java:-1:-1:NM_FIELD_NAMING_CONVENTION -#Illegal_Line_Position:sboesebeck-morphium_281fca_3aa6ecsrc/de/caluga/morphium/LazyDeReferencingProxy.java:-1:-1:SE_TRANSIENT_FIELD_NOT_RESTORED -#Illegal_Line_Position:sboesebeck-morphium_2d2d40_037703src/de/caluga/morphium/ConfigElement.java:-1:-1:NM_FIELD_NAMING_CONVENTION -#Null_Violation_Hunk:sboesebeck-morphium_721c29_2b6fd8src/de/caluga/morphium/writer/WriterImpl.java:715:715:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:sboesebeck-morphium_7ebb12_0e3c27src/de/caluga/morphium/Morphium.java:343:343:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:sboesebeck-morphium_822690_b00c2bsrc/de/caluga/morphium/Morphium.java:1959:2012:SE_BAD_FIELD_INNER_CLASS -#Null_Violation_Hunk:sboesebeck-morphium_822690_b00c2bsrc/de/caluga/morphium/Morphium.java:1959:2012:SIC_INNER_SHOULD_BE_STATIC_NEEDS_THIS -#Null_Violation_Hunk:sboesebeck-morphium_822690_b00c2bsrc/de/caluga/morphium/Morphium.java:2085:2133:SE_BAD_FIELD_INNER_CLASS -#Null_Violation_Hunk:sboesebeck-morphium_822690_b00c2bsrc/de/caluga/morphium/Morphium.java:2085:2133:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:sboesebeck-morphium_a1fee4_2b693bsrc/de/caluga/morphium/Morphium.java:1204:1232:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:sboesebeck-morphium_d1ba6d_8d69aesrc/de/caluga/morphium/Morphium.java:1946:1959:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:sboesebeck-morphium_eeb738_b7b13csrc/de/caluga/morphium/PartiallyUpdateableProxy.java:-1:-1:SE_TRANSIENT_FIELD_NOT_RESTORED -#Null_Violation_Hunk:sbwhitecap-Phex-trunk_8ea6bd_073c01src/main/java/phex/gui/tabs/network/NetworkTab.java:805:831:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:sbwhitecap-Phex-trunk_8ea6bd_073c01src/main/java/phex/gui/tabs/network/NetworkTab.java:718:802:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:sbwhitecap-Phex-trunk_b0223b_4a79basrc/main/java/phex/prefs/api/PreferencesFactory.java:327:365:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:sdl-Testy_c077e3_4d851bsrc/main/java/com/sdl/selenium/web/WebLocator.java:-1:-1:MS_CANNOT_BE_FINAL -#Null_Violation_Hunk:searchbox-io-Jest_005792_beed2dsrc/main/java/io/searchbox/Indices/CreateIndex.java:19:45:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:searchbox-io-Jest_1ce876_79400csrc/main/java/io/searchbox/indices/IndicesExists.java:13:20:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:searchbox-io-Jest_1ce876_79400csrc/main/java/io/searchbox/indices/mapping/PutMapping.java:14:33:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:searchbox-io-Jest_1e43c4_0d4774src/main/java/io/searchbox/indices/GetMapping.java:13:28:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:searchbox-io-Jest_1e43c4_0d4774src/main/java/io/searchbox/indices/GetTemplate.java:12:25:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:searchbox-io-Jest_1e43c4_0d4774src/main/java/io/searchbox/indices/PutMapping.java:13:29:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:searchbox-io-Jest_1e43c4_0d4774src/main/java/io/searchbox/indices/PutTemplate.java:12:26:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:searchbox-io-Jest_33815f_a684aesrc/main/java/io/searchbox/core/Get.java:18:146:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:searchbox-io-Jest_33815f_a684aesrc/main/java/io/searchbox/Indices/CreateIndex.java:19:45:RI_REDUNDANT_INTERFACES -#Illegal_Line_Position:searchbox-io-Jest_4b1801_6281a1src/main/java/io/searchbox/core/MoreLikeThis.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:searchbox-io-Jest_4b7c25_470c71src/main/java/io/searchbox/core/Get.java:16:69:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:searchbox-io-Jest_4b7c25_470c71src/main/java/io/searchbox/core/MultiGet.java:16:102:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:searchbox-io-Jest_4b7c25_470c71src/main/java/io/searchbox/indices/DeleteIndex.java:15:30:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:searchbox-io-Jest_4b7c25_470c71src/main/java/io/searchbox/indices/mapping/PutMapping.java:12:28:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:searchbox-io-Jest_8c48e3_90718esrc/main/java/io/searchbox/indices/IndicesExists.java:13:20:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:searchbox-io-Jest_8c48e3_90718esrc/main/java/io/searchbox/indices/mapping/PutMapping.java:14:33:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:searchbox-io-Jest_e2436d_f6ccc8src/main/java/io/searchbox/core/search/facet/TermsFacet.java:55:65:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:searchbox-io-Jest_f41ef7_0150edsrc/main/java/io/searchbox/core/Delete.java:14:21:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:sesuncedu-htmlparser_652684_9d1d76src/nu/validator/htmlparser/impl/StackNode.java:134:134:UPM_UNCALLED_PRIVATE_METHOD -#Null_Violation_Hunk:sesuncedu-htmlparser_f3e696_0ee8e0src/nu/validator/htmlparser/io/MetaSniffer.java:38:38:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:shabbies-clockwork_85dd0b_db98e1src/main/java/model/PostManager.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:simon-eastwood-DependencyCheckCM_193bba_e307cesrc/main/java/org/owasp/dependencycheck/data/lucene/VersionTokenizingFilter.java:-1:-1:CI_CONFUSED_INHERITANCE -#Illegal_Line_Position:simon-eastwood-DependencyCheckCM_1ead96_ac8920src/main/java/org/owasp/dependencycheck/analyzer/FalsePositiveAnalyzer.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:simon-eastwood-DependencyCheckCM_474018_367da7src/main/java/org/codesecure/dependencycheck/utils/Settings.java:39:39:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:simon-eastwood-DependencyCheckCM_836c1b_ab27a7src/main/java/org/owasp/dependencycheck/data/lucene/VersionTokenizingFilter.java:-1:-1:CI_CONFUSED_INHERITANCE -#Illegal_Line_Position:simon-eastwood-DependencyCheckCM_ae279d_065a80src/main/java/org/codesecure/dependencycheck/dependency/VulnerableSoftware.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:simon-eastwood-DependencyCheckCM_d02c31_5b310dsrc/main/java/org/codesecure/dependencycheck/utils/Settings.java:39:39:SIC_INNER_SHOULD_BE_STATIC 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-#Null_Violation_Hunk:skillcoyne-IGCSA_c720c1_b2a958src/main/java/org/lcsb/lu/igcsa/genome/Chromosome.java:112:112:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:slipcor-pvparena_0df1a3_c78b23src/net/slipcor/pvparena/arena/Arena.java:23:23:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:slipcor-pvparena_9a1bc7_192c0fsrc/net/slipcor/pvparena/commands/PAA_Install.java:217:217:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:slipcor-pvparena_9a1bc7_192c0fsrc/net/slipcor/pvparena/commands/PAA_Uninstall.java:142:142:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:slipcor-pvparena_e7ec82_7790c9src/net/slipcor/pvparena/loadables/ArenaRegionShape.java:20:61:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:slowenthal-classproject_fddaaf_f7f8e6src/main/java/playlist/model/UserDAO.java:94:94:UC_USELESS_VOID_METHOD -#Illegal_Line_Position:soluvas-soluvas-framework_5d8924_ad85cdjson/src/main/java/org/soluvas/json/LowerEnumDeserializer.java:-1:-1:SE_TRANSIENT_FIELD_NOT_RESTORED 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-#Null_Violation_Hunk:SpoutDev-Spout_3bec58_035cd9src/main/java/org/getspout/api/inventory/Inventory.java:9:32:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:SpoutDev-Spout_4e46cc_ce20acsrc/main/java/org/spout/math/Matrix2.java:321:329:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:SpoutDev-Spout_4e46cc_ce20acsrc/main/java/org/spout/math/Matrix3.java:444:452:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:SpoutDev-Spout_4e46cc_ce20acsrc/main/java/org/spout/math/Matrix4.java:583:591:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:SpoutDev-Spout_7af7c1_7cd2c9src/main/java/org/spout/math/matrix/Matrix.java:600:612:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:SpoutDev-Spout_d3e912_9f07c9src/main/java/org/getspout/api/math/Vector3.java:-1:-1:NM_FIELD_NAMING_CONVENTION -#Illegal_Line_Position:SpoutDev-Spout_e693d9_8bd6f8src/main/java/org/getspout/api/math/Vector3.java:-1:-1:NM_FIELD_NAMING_CONVENTION -#Null_Violation_Hunk:spring-projects-spring-data-commons_0f448d_71f159src/main/java/org/springframework/data/geo/GeoPage.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Illegal_Line_Position:stackmob-stackmob-java-client-sdk_bc7d77_641192src/main/java/com/stackmob/sdk/api/StackMobCookieStore.java:-1:-1:STCAL_STATIC_SIMPLE_DATE_FORMAT_INSTANCE -#Null_Violation_Hunk:stackmob-stackmob-java-client-sdk_f1da86_38252asrc/main/java/com/stackmob/sdk/model/StackMobModel.java:41:58:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:stackmob-stackmob-java-client-sdk_fccb90_d1c762src/main/java/com/stackmob/sdk/api/StackMobSession.java:-1:-1:STCAL_STATIC_SIMPLE_DATE_FORMAT_INSTANCE -#Illegal_Line_Position:Stratio-cassandra-lucene-index_246cea_0bf9a1plugin/src/main/java/com/stratio/cassandra/lucene/search/condition/SingleColumnCondition.java:-1:-1:MF_CLASS_MASKS_FIELD 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-#Illegal_Line_Position:swagger-api-swagger-codegen_d1daf3_812520src/main/java/com/wordnik/swagger/codegen/CodegenProperty.java:-1:-1:UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD -#Illegal_Line_Position:swagger-api-swagger-core_1485e6_2e65c6modules/swagger-models/src/main/java/com/wordnik/swagger/models/Operation.java:-1:-1:UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD -#Illegal_Line_Position:swagger-api-swagger-core_218a68_bfb9d2modules/swagger-models/src/main/java/com/wordnik/swagger/models/Operation.java:-1:-1:UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:swagger-api-swagger-core_253bd9_24c41cmodules/swagger-models/src/main/java/io/swagger/models/properties/DecimalProperty.java:6:25:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:swagger-api-swagger-core_253bd9_24c41cmodules/swagger-models/src/main/java/io/swagger/models/properties/DoubleProperty.java:8:86:RI_REDUNDANT_INTERFACES 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-#Null_Violation_Hunk:swagger-api-swagger-core_400662_b4fbe3modules/swagger-models/src/main/java/io/swagger/models/properties/DoubleProperty.java:8:86:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:swagger-api-swagger-core_400662_b4fbe3modules/swagger-models/src/main/java/io/swagger/models/properties/FloatProperty.java:8:86:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:swagger-api-swagger-core_400662_b4fbe3modules/swagger-models/src/main/java/io/swagger/models/properties/IntegerProperty.java:9:87:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:swagger-api-swagger-core_400662_b4fbe3modules/swagger-models/src/main/java/io/swagger/models/properties/LongProperty.java:8:86:RI_REDUNDANT_INTERFACES -#Illegal_Line_Position:swagger-api-swagger-core_e46368_1485e6modules/swagger-models/src/main/java/com/wordnik/swagger/models/Operation.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:swagger-api-swagger-core_ee0b63_db79ccmodules/swagger-models/src/main/java/com/wordnik/swagger/models/Operation.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:swagger-api-swagger-core_ee0b63_db79ccmodules/swagger-models/src/main/java/com/wordnik/swagger/models/SecurityRequirement.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:tananaev-traccar_320d41_eb4ee7src/org/traccar/model/Device.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:tananaev-traccar_8e555a_81a7fbsrc/org/traccar/BasePipelineFactory.java:57:79:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tananaev-traccar_8e555a_81a7fbsrc/org/traccar/protocol/NavisProtocolDecoder.java:65:75:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tananaev-traccar_8e555a_81a7fbsrc/org/traccar/web/AsyncServlet.java:51:174:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:tastybento-askyblock_340671_3d8c98src/com/wasteofplastic/askyblock/Settings.java:-1:-1:MS_CANNOT_BE_FINAL -#Illegal_Line_Position:tastybento-askyblock_340671_3d8c98src/com/wasteofplastic/askyblock/Settings.java:-1:-1:MS_PKGPROTECT -#Illegal_Line_Position:tastybento-askyblock_81b3c3_3686c1src/com/wasteofplastic/askyblock/Settings.java:-1:-1:MS_PKGPROTECT -#Illegal_Line_Position:tastybento-askyblock_8b89c6_c90cd0src/com/wasteofplastic/askyblock/commands/AdminCmd.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:taverna-taverna-ui-components_ef086e_85f24bactivity-palette-ui/src/main/java/net/sf/taverna/t2/workbench/ui/servicepanel/ServicePanel.java:181:203:SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -#Null_Violation_Hunk:TeamExodus-external_gson_0e8569_983fc6src/main/java/com/google/gson/internal/bind/CollectionTypeAdapterFactory.java:60:103:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:TeamExodus-external_gson_24d67a_cc7708src/test/java/com/google/gson/internal/LinkedHashTreeMap.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:TeamExodus-external_gson_63c611_8a5405src/main/java/com/google/gson/internal/LazilyParsedNumber.java:29:67:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:TeamExodus-external_gson_7a5632_8e3a24src/main/java/com/google/gson/ParseException.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:TeamExodus-external_gson_7a5632_8e3a24src/main/java/com/google/gson/SimpleCharStream.java:-1:-1:CI_CONFUSED_INHERITANCE -#Illegal_Line_Position:TeamExodus-external_gson_7a5632_8e3a24src/main/java/com/google/gson/Token.java:-1:-1:UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:TeamExodus-external_gson_7a5632_8e3a24src/main/java/com/google/gson/Token.java:1087:1087:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:TeamExodus-external_gson_7a5632_8e3a24src/main/java/com/google/gson/Token.java:1085:1085:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:TeamExodus-external_gson_9a5a09_ba14fasrc/main/java/com/google/gson/internal/bind/MapTypeAdapterFactory.java:58:99:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:TeamExodus-external_gson_ad8d90_b664d1src/main/java/com/google/gson/JsonParserImpl.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:TeamExodus-external_gson_bcd6a2_1e2562src/main/java/com/google/gson/internal/bind/ReflectiveTypeAdapterFactory.java:147:202:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:TeamExodus-external_gson_f4ae65_1d73cfsrc/main/java/com/google/gson/internal/LinkedTreeMap.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:TeamExodus-external_gson_f8104a_bf08a0src/main/java/com/google/gson/internal/LazilyParsedNumber.java:29:67:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:teanutella-AppEmployee_1905ad_d6d397src/main/java/ca/ulaval/glo4003/appemployee/domain/Project.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:teanutella-AppEmployee_83fc11_3e082bsrc/main/java/ca/ulaval/glo4003/appemployee/web/dto/UserDto.java:17:17:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Illegal_Line_Position:tehbeard-BeardStat_233110_ec664aspigot/src/main/java/com/tehbeard/beardstat/bukkit/identifier/GrahamIdentifierService.java:-1:-1:UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD -#Illegal_Line_Position:tehbeard-BeardStat_38428f_525045src/main/java/com/tehbeard/beardstat/bukkit/identifier/GrahamIdentifierService.java:-1:-1:UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:tehbeard-BeardStat_38428f_525045src/main/java/com/tehbeard/beardstat/bukkit/identifier/GrahamIdentifierService.java:62:62:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:tehbeard-BeardStat_39ec62_ed1ca3src/main/java/com/tehbeard/BeardStat/DataProviders/JDBCStatDataProvider.java:-1:-1:UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD -#Illegal_Line_Position:tehbeard-BeardStat_a5e66c_44371csrc/main/java/me/tehbeard/BeardStat/DataProviders/MysqlStatDataProvider.java:-1:-1:MS_PKGPROTECT -#Illegal_Line_Position:tehbeard-BeardStat_a5e66c_44371csrc/main/java/me/tehbeard/BeardStat/DataProviders/SQLiteStatDataProvider.java:-1:-1:MS_PKGPROTECT -#Null_Violation_Hunk:tehbeard-BeardStat_b9c2af_a3b5f3src/main/java/me/tehbeard/BeardStat/commands/playedCommand.java:22:121:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:tehbeard-BeardStat_f2254b_cae8b6src/main/java/com/tehbeard/BeardStat/BeardStat.java:287:299:NM_CLASS_NAMING_CONVENTION -#Illegal_Line_Position:telefonicaid-fiware-cygnus_be2509_b4640csrc/main/java/com/telefonica/iot/cygnus/sinks/OrionSink.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:telefonicaid-fiware-cygnus_bf99fd_92be37src/main/java/com/telefonica/iot/cygnus/sinks/OrionSink.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:telefonicaid-fiware-cygnus_d0e8cb_8ef4bcsrc/main/java/com/telefonica/iot/cygnus/sinks/OrionSink.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:telefonicaid-fiware-cygnus_d87281_adc7d9src/main/java/com/telefonica/iot/cygnus/sinks/OrionMongoBaseSink.java:-1:-1:MF_CLASS_MASKS_FIELD -#Illegal_Line_Position:telefonicaid-fiware-cygnus_fa7d12_5dd173src/main/java/com/telefonica/iot/cygnus/sinks/OrionSink.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:tengstrand-Laja_0cdde7_27fe9esrc/main/java/net/sf/laja/parser/cdd/statetemplate/StateTemplate.java:126:126:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:tengstrand-Laja_8fed87_9de7fbsrc/main/java/net/sf/laja/parser/cdd/statetemplate/StateTemplate.java:152:152:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:tengstrand-Laja_b940e5_8fed87src/main/java/net/sf/laja/parser/cdd/statetemplate/StateTemplate.java:146:146:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:tengstrand-Laja_dd37e3_21eb52src/test/java/net/sf/laja/cdd/testgen/Person.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:tengstrand-Laja_dd37e3_21eb52src/test/java/net/sf/laja/cdd/testgen/SpecialAddress.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:tengstrand-Laja_dd37e3_21eb52src/test/java/net/sf/laja/cdd/testgen/SpecialPerson.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:tengstrand-Laja_dd37e3_21eb52src/test/java/net/sf/laja/cdd/testgen/state/AddressState.java:126:264:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:tengstrand-Laja_dd37e3_21eb52src/test/java/net/sf/laja/cdd/testgen/state/PersonState.java:229:481:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:tengstrand-Laja_ec9e70_15dfcdsrc/main/java/net/sf/laja/cdd/testgen/state/AddressState.java:230:260:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:tengstrand-Laja_ec9e70_15dfcdsrc/main/java/net/sf/laja/cdd/testgen/state/PersonState.java:427:502:SE_NO_SERIALVERSIONID -#Illegal_Line_Position:The-Dream-Team-Tardis_f7d98c_c71f75src/main/java/me/dreamteam/tardis/Database.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:TheCoder4eu-BootsFaces-OSP_0b3dca_e37f37src/main/java/net/bootsfaces/component/switchComponent/Switch.java:46:53:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:TheCoder4eu-BootsFaces-OSP_262b14_6ea2a6src/main/java/net/bootsfaces/component/switchComponent/Switch.java:46:53:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:TheCoder4eu-BootsFaces-OSP_262b14_6ea2a6src/main/java/net/bootsfaces/render/H.java:173:173:MS_PKGPROTECT -#Null_Violation_Hunk:TheCoder4eu-BootsFaces-OSP_262b14_6ea2a6src/main/java/net/bootsfaces/render/H.java:169:169:MS_PKGPROTECT -#Null_Violation_Hunk:TheCoder4eu-BootsFaces-OSP_262b14_6ea2a6src/main/java/net/bootsfaces/render/H.java:174:174:MS_PKGPROTECT -#Null_Violation_Hunk:TheCoder4eu-BootsFaces-OSP_262b14_6ea2a6src/main/java/net/bootsfaces/render/H.java:170:170:MS_PKGPROTECT -#Null_Violation_Hunk:TheCoder4eu-BootsFaces-OSP_262b14_6ea2a6src/main/java/net/bootsfaces/render/H.java:172:172:MS_PKGPROTECT -#Null_Violation_Hunk:TheCoder4eu-BootsFaces-OSP_3b207b_074c39src/main/java/net/bootsfaces/render/H.java:175:175:MS_PKGPROTECT -#Null_Violation_Hunk:TheCoder4eu-BootsFaces-OSP_3b207b_074c39src/main/java/net/bootsfaces/render/H.java:169:169:MS_PKGPROTECT -#Null_Violation_Hunk:TheCoder4eu-BootsFaces-OSP_3b207b_074c39src/main/java/net/bootsfaces/render/H.java:172:172:MS_PKGPROTECT -#Null_Violation_Hunk:TheCoder4eu-BootsFaces-OSP_3b207b_074c39src/main/java/net/bootsfaces/render/H.java:173:173:MS_PKGPROTECT -#Null_Violation_Hunk:TheCoder4eu-BootsFaces-OSP_3b207b_074c39src/main/java/net/bootsfaces/render/H.java:171:171:MS_PKGPROTECT -#Illegal_Line_Position:TheCoder4eu-BootsFaces-OSP_634812_c80707src/main/java/net/bootsfaces/component/tabView/TabView.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:TheCoder4eu-BootsFaces-OSP_8385b7_db33aesrc/main/java/net/bootsfaces/component/switchComponent/Switch.java:46:53:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:TheCoder4eu-BootsFaces-OSP_b55074_210515src/main/java/net/bootsfaces/render/H.java:171:171:MS_PKGPROTECT -#Null_Violation_Hunk:TheCoder4eu-BootsFaces-OSP_b55074_210515src/main/java/net/bootsfaces/render/H.java:175:175:MS_PKGPROTECT -#Null_Violation_Hunk:TheCoder4eu-BootsFaces-OSP_b55074_210515src/main/java/net/bootsfaces/render/H.java:173:173:MS_PKGPROTECT -#Null_Violation_Hunk:TheCoder4eu-BootsFaces-OSP_b55074_210515src/main/java/net/bootsfaces/render/H.java:172:172:MS_PKGPROTECT -#Null_Violation_Hunk:TheCoder4eu-BootsFaces-OSP_b55074_210515src/main/java/net/bootsfaces/render/H.java:174:174:MS_PKGPROTECT -#Null_Violation_Hunk:TheCoder4eu-BootsFaces-OSP_b55074_210515src/main/java/net/bootsfaces/render/H.java:169:169:MS_PKGPROTECT -#Null_Violation_Hunk:TheCoder4eu-BootsFaces-OSP_f05180_8385b7src/main/java/net/bootsfaces/render/H.java:174:174:MS_PKGPROTECT -#Null_Violation_Hunk:TheCoder4eu-BootsFaces-OSP_f05180_8385b7src/main/java/net/bootsfaces/render/H.java:169:169:MS_PKGPROTECT -#Null_Violation_Hunk:TheCoder4eu-BootsFaces-OSP_f05180_8385b7src/main/java/net/bootsfaces/render/H.java:171:171:MS_PKGPROTECT -#Null_Violation_Hunk:TheCoder4eu-BootsFaces-OSP_f05180_8385b7src/main/java/net/bootsfaces/render/H.java:170:170:MS_PKGPROTECT -#Null_Violation_Hunk:TheCoder4eu-BootsFaces-OSP_f05180_8385b7src/main/java/net/bootsfaces/render/H.java:172:172:MS_PKGPROTECT -#Null_Violation_Hunk:thervh70-SEM_Team9_0c9e8d_b07216src/main/java/nl/tudelft/ti2206/group9/entities/Coin.java:31:31:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:thinkaurelius-titan_02f228_22ccebsrc/main/java/com/thinkaurelius/faunus/hdfs/GraphFilter.java:15:25:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:thinkaurelius-titan_104742_6723c0src/main/java/com/thinkaurelius/faunus/hdfs/OnlyGraphFilter.java:15:25:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:thinkaurelius-titan_99e32d_74a81csrc/main/java/com/thinkaurelius/faunus/io/graph/FaunusElement.java:17:17:EQ_COMPARETO_USE_OBJECT_EQUALS -#Null_Violation_Hunk:thinkaurelius-titan_9f8867_f1e139src/main/java/com/thinkaurelius/faunus/FaunusGraph.java:650:655:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:thinkaurelius-titan_b696b7_730e9fsrc/main/java/com/thinkaurelius/faunus/hdfs/NoSideEffectFilter.java:15:25:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:thinkaurelius-titan_c28673_c311d3src/main/java/com/thinkaurelius/faunus/mapreduce/FaunusCompiler.java:637:647:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:thinkaurelius-titan_c311d3_57a932src/main/java/com/thinkaurelius/faunus/hdfs/HDFSTools.java:100:110:SE_NO_SERIALVERSIONID -#Null_Violation_Hunk:thinkaurelius-titan_e6fe1d_c349a2src/main/java/com/thinkaurelius/faunus/io/formats/FaunusTextInputFormat.java:17:17:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:thinkofdeath-ThinkMap_a9ba1b_ea8eecclient/src/main/java/uk/co/thinkofdeath/mapviewer/worker/Worker.java:49:49:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:thinkofdeath-ThinkMap_cea619_639205bukkit/src/main/java/think/webglmap/bukkit/ChunkManager.java:77:117:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:thomasjungblut-thomasjungblut-common_536bfe_c40d4asrc/de/jungblut/classification/nn/MultilayerPerceptronCostFunction.java:253:253:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:threerings-clyde_7d9052_2c8783src/main/java/com/threerings/config/ManagedConfig.java:59:59:URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:timmolter-XChart_0c9e93_4e918dsrc/main/java/com/xeiam/xchart/swing/SwingWrapper.java:162:176:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tinkerpop-blueprints_6f6ce4_fca85bblueprints-neo4j2-graph/src/main/java/com/tinkerpop/blueprints/impls/neo4j2/Neo4j2Vertex.java:92:116:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tinkerpop-blueprints_6f6ce4_fca85bblueprints-neo4j2-graph/src/main/java/com/tinkerpop/blueprints/impls/neo4j2/Neo4j2Vertex.java:135:160:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tinkerpop-blueprints_bf2c57_16bd1cblueprints-neo4j2-graph/src/main/java/com/tinkerpop/blueprints/impls/neo4j2/Neo4j2Vertex.java:135:160:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tinkerpop-blueprints_bf2c57_16bd1cblueprints-neo4j2-graph/src/main/java/com/tinkerpop/blueprints/impls/neo4j2/Neo4j2Vertex.java:92:116:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tomp2p-TomP2P_1236d8_3b963esrc/main/java/net/tomp2p/connection/ChannelCreator.java:166:171:SIC_INNER_SHOULD_BE_STATIC_ANON -#Null_Violation_Hunk:tomp2p-TomP2P_1236d8_3b963esrc/main/java/net/tomp2p/connection/ChannelCreator.java:286:291:SIC_INNER_SHOULD_BE_STATIC_ANON -#Null_Violation_Hunk:tomp2p-TomP2P_371cb9_051ca1src/main/java/net/tomp2p/connection/Scheduler.java:525:556:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:tomp2p-TomP2P_371cb9_051ca1src/main/java/net/tomp2p/connection/Scheduler.java:137:144:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tomp2p-TomP2P_371cb9_051ca1src/main/java/net/tomp2p/connection/Scheduler.java:148:239:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:tomp2p-TomP2P_371cb9_051ca1src/main/java/net/tomp2p/connection/Scheduler.java:426:503:RI_REDUNDANT_INTERFACES -#Null_Violation_Hunk:tomp2p-TomP2P_371cb9_051ca1src/main/java/net/tomp2p/peers/PeerMap.java:78:102:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tomp2p-TomP2P_371cb9_051ca1src/main/java/net/tomp2p/upnp/ActionMessage.java:593:593:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tomp2p-TomP2P_4a6971_6f2a7csrc/main/java/net/tomp2p/p2p/builder/DHTBuilder.java:237:237:UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -#Null_Violation_Hunk:tomp2p-TomP2P_4a6971_6f2a7csrc/main/java/net/tomp2p/upnp/ActionMessage.java:526:526:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:tomp2p-TomP2P_77ad45_6f71a2core/src/main/java/net/tomp2p/storage/Data.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:tomp2p-TomP2P_c2f081_ed8a9acore/src/main/java/net/tomp2p/message/Message.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:tomp2p-TomP2P_c2f081_ed8a9acore/src/main/java/net/tomp2p/message/Message.java:-1:-1:SE_TRANSIENT_FIELD_NOT_RESTORED -#Illegal_Line_Position:tomp2p-TomP2P_c2f081_ed8a9acore/src/main/java/net/tomp2p/storage/Data.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:tomp2p-TomP2P_f650c9_541772src/main/java/net/tomp2p/connection/ChannelCreator.java:282:287:SIC_INNER_SHOULD_BE_STATIC_ANON -#Null_Violation_Hunk:tranzero-SoftServe_Java-105_Project_218277_adac44src/main/java/com/ita/edu/softserve/web/TripsController.java:30:30:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:tranzero-SoftServe_Java-105_Project_2eb3b1_2c1f09src/main/java/com/ita/edu/softserve/web/TripsController.java:30:30:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:tranzero-SoftServe_Java-105_Project_3bc585_a3b038src/main/java/com/ita/edu/softserve/web/TripsController.java:30:30:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:treasure-data-td-import-java_264e2e_aba834src/main/java/com/treasure_data/file/AlasTimeFormatProcessor.java:22:22:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:treasure-data-td-import-java_8a4bdd_9dd3f1src/main/java/com/treasure_data/bulk_import/BulkImportMain.java:307:307:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:treasure-data-td-import-java_b85804_bb89a7src/main/java/com/treasure_data/bulk_import/upload_parts/TaskResult.java:23:24:NM_SAME_SIMPLE_NAME_AS_SUPERCLASS -#Null_Violation_Hunk:TridentSDK-TridentSDK_38e880_c1099fsrc/main/java/net/tridentsdk/plugin/PluginClassLoader.java:83:83:UC_USELESS_VOID_METHOD -#Null_Violation_Hunk:TridentSDK-TridentSDK_58ba68_48be58src/main/java/net/tridentsdk/plugin/cmd/CommandHandler.java:120:142:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:TridentSDK-TridentSDK_79820f_72357esrc/main/java/net/tridentsdk/api/event/player/PlayerInteractEvent.java:-1:-1:UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD -#Illegal_Line_Position:TridentSDK-TridentSDK_79820f_72357esrc/main/java/net/tridentsdk/api/event/player/PlayerMoveEvent.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:TridentSDK-TridentSDK_98d727_daa2f0src/main/java/net/tridentsdk/util/WeakEntity.java:367:370:SIC_INNER_SHOULD_BE_STATIC_ANON -#Null_Violation_Hunk:TridentSDK-TridentSDK_98d727_daa2f0src/main/java/net/tridentsdk/util/WeakEntity.java:593:593:WMI_WRONG_MAP_ITERATOR -#Null_Violation_Hunk:TridentSDK-TridentSDK_b93a8a_72adb6src/main/java/net/tridentsdk/plugin/cmd/CommandHandler.java:116:138:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:TridentSDK-TridentSDK_c5d69a_e36819src/main/java/net/tridentsdk/world/ChunkLocation.java:32:46:CN_IDIOM -#Illegal_Line_Position:TridentSDK-TridentSDK_c784df_3a2feesrc/main/java/net/tridentsdk/api/Location.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:TridentSDK-TridentSDK_d5dc75_c1dbc8src/main/java/net/tridentsdk/api/event/player/PlayerInteractEvent.java:-1:-1:UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD -#Illegal_Line_Position:TridentSDK-TridentSDK_d5dc75_c1dbc8src/main/java/net/tridentsdk/api/event/player/PlayerMoveEvent.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:TridentSDK-TridentSDK_d64633_fcf5a6src/main/java/net/tridentsdk/api/scheduling/TridentRunnable.java:95:95:UWF_UNWRITTEN_FIELD -#Null_Violation_Hunk:TridentSDK-TridentSDK_ff2fba_5d5dbesrc/main/java/net/tridentsdk/plugin/cmd/CommandHandler.java:115:137:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_0eee6d_bac0afcore/src/main/java/org/fiteagle/core/aaa/KeyManagement.java:298:298:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_0eee6d_bac0afcore/src/main/java/org/fiteagle/core/aaa/KeyStoreManagement.java:122:122:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_113b20_969203core/src/main/java/org/fiteagle/core/aaa/AuthenticationHandler.java:170:170:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_113b20_969203core/src/main/java/org/fiteagle/core/aaa/AuthenticationHandler.java:164:164:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_31bffc_e9bc3fcore/src/main/java/org/fiteagle/core/aaa/AuthenticationHandler.java:130:130:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_31bffc_e9bc3fcore/src/main/java/org/fiteagle/core/aaa/AuthenticationHandler.java:118:118:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_31bffc_e9bc3fcore/src/main/java/org/fiteagle/core/aaa/AuthenticationHandler.java:124:124:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_36e66f_7910e7core/src/main/java/org/fiteagle/core/userdatabase/UserDBManager.java:166:166:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_3a104b_346272core/src/main/java/org/fiteagle/core/aaa/KeyStoreManagement.java:234:234:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_3a104b_346272core/src/main/java/org/fiteagle/core/aaa/KeyStoreManagement.java:230:230:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_3a104b_346272core/src/main/java/org/fiteagle/core/userdatabase/UserDBManager.java:215:215:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_434121_c41c73core/src/main/java/org/fiteagle/core/aaa/CertificateAuthority.java:180:180:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_434121_c41c73core/src/main/java/org/fiteagle/core/aaa/CertificateAuthority.java:172:172:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_434121_c41c73core/src/main/java/org/fiteagle/core/aaa/CertificateAuthority.java:177:177:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_434121_c41c73core/src/main/java/org/fiteagle/core/userdatabase/UserDBManager.java:35:35:NM_CLASS_NAMING_CONVENTION -#Null_Violation_Hunk:tubav-fiteagle_434121_c41c73core/src/main/java/org/fiteagle/core/userdatabase/UserDBManager.java:212:212:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:tubav-fiteagle_47ed2a_20e3a1core/src/main/java/org/fiteagle/core/persistence/SQLiteDatabase.java:-1:-1:MS_CANNOT_BE_FINAL -#Null_Violation_Hunk:tubav-fiteagle_5d4f8d_e8e4ddcore/src/main/java/org/fiteagle/core/userdatabase/UserDBManager.java:210:210:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_7ae1d4_1bfdaccore/src/main/java/org/fiteagle/core/aaa/AuthenticationHandler.java:204:204:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_8ae30a_3420eacore/src/main/java/org/fiteagle/core/aaa/KeyManagement.java:265:265:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_a912f0_575c75core/src/main/java/org/fiteagle/core/aaa/AuthenticationHandler.java:221:221:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_a912f0_575c75core/src/main/java/org/fiteagle/core/aaa/AuthenticationHandler.java:215:215:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_b2be0b_c17596core/src/main/java/org/fiteagle/core/aaa/KeyManagement.java:298:298:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_b2be0b_c17596core/src/main/java/org/fiteagle/core/aaa/KeyStoreManagement.java:122:122:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_c1894a_6aa330core/src/main/java/org/fiteagle/core/aaa/KeyManagement.java:298:298:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_c1894a_6aa330core/src/main/java/org/fiteagle/core/aaa/KeyStoreManagement.java:122:122:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_d9594c_44b4d0core/src/main/java/org/fiteagle/core/aaa/AuthenticationHandler.java:124:124:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_d9594c_44b4d0core/src/main/java/org/fiteagle/core/aaa/AuthenticationHandler.java:130:130:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_dd2dfa_a912f0core/src/main/java/org/fiteagle/core/aaa/AuthenticationHandler.java:130:130:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_deff26_32f8afcore/src/main/java/org/fiteagle/core/aaa/KeyManagement.java:298:298:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_deff26_32f8afcore/src/main/java/org/fiteagle/core/aaa/KeyStoreManagement.java:122:122:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_e89a8a_3bd8edcore/src/main/java/org/fiteagle/core/aaa/CertificateAuthority.java:159:159:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_e89a8a_3bd8edcore/src/main/java/org/fiteagle/core/aaa/CertificateAuthority.java:154:154:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_e89a8a_3bd8edcore/src/main/java/org/fiteagle/core/groupmanagement/SQLiteGroupDatabase.java:116:116:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_e89a8a_3bd8edcore/src/main/java/org/fiteagle/core/groupmanagement/SQLiteGroupDatabase.java:120:120:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_e8da92_da460ecore/src/main/java/org/fiteagle/core/aaa/KeyManagement.java:265:265:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_e9bc3f_e8e4ddcore/src/main/java/org/fiteagle/core/userdatabase/UserDBManager.java:158:158:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_f1503a_d7c963core/src/main/java/org/fiteagle/core/aaa/KeyManagement.java:298:298:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_f1503a_d7c963core/src/main/java/org/fiteagle/core/aaa/KeyStoreManagement.java:122:122:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_f3cf3c_04ea73core/src/main/java/org/fiteagle/core/aaa/KeyStoreManagement.java:230:230:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_f3cf3c_04ea73core/src/main/java/org/fiteagle/core/aaa/KeyStoreManagement.java:234:234:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_f3cf3c_04ea73core/src/main/java/org/fiteagle/core/userdatabase/UserDBManager.java:215:215:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_f6b16f_b538b1core/src/main/java/org/fiteagle/core/aaa/KeyManagement.java:298:298:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tubav-fiteagle_f6b16f_b538b1core/src/main/java/org/fiteagle/core/aaa/KeyStoreManagement.java:122:122:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:tuwiendsg-rSYBL_08cc08_589cf7rSYBL-control-service-pom/rSYBL-learning-engine/src/main/java/at/ac/tuwien/dsg/rSybl/learningEngine/advise/kMeans/Clustering.java:105:121:SIC_INNER_SHOULD_BE_STATIC -#Null_Violation_Hunk:twilio-twilio-java_21242f_0f2a8dsrc/main/java/com/twilio/sdk/AppEngineClientConnectionManager.java:28:38:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:twilio-twilio-java_482120_2c8b2dsrc/main/java/com/twilio/sdk/resource/NextGenInstanceResource.java:-1:-1:STCAL_STATIC_SIMPLE_DATE_FORMAT_INSTANCE -#Null_Violation_Hunk:twilio-twilio-java_51a41b_593584src/main/java/com/twilio/sdk/AppEngineClientConnectionManager.java:28:38:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:twilio-twilio-java_531510_e63ae5src/main/java/com/twilio/sdk/resource/InstanceResource.java:-1:-1:STCAL_STATIC_SIMPLE_DATE_FORMAT_INSTANCE -#Illegal_Line_Position:twilio-twilio-java_6e52b6_8d9c16src/main/java/com/twilio/sdk/taskrouter/TaskRouterCapability.java:-1:-1:MF_CLASS_MASKS_FIELD -#Illegal_Line_Position:twilio-twilio-java_761e45_378c17src/main/java/com/twilio/sdk/resource/InstanceResource.java:-1:-1:STCAL_STATIC_SIMPLE_DATE_FORMAT_INSTANCE -#Null_Violation_Hunk:twilio-twilio-java_d32130_0620eesrc/main/java/com/twilio/sdk/AppEngineClientConnectionManager.java:28:38:SIC_INNER_SHOULD_BE_STATIC -#Illegal_Line_Position:ucam-cl-dtg-urop-2013-questions_583746_1e0e63src/main/java/uk/ac/cam/sup/models/QuestionSet.java:-1:-1:UUF_UNUSED_FIELD -#Illegal_Line_Position:ucam-cl-dtg-urop-2013-questions_72921e_d9311csrc/main/java/uk/ac/cam/sup/models/QuestionSet.java:-1:-1:UUF_UNUSED_FIELD -#Null_Violation_Hunk:UnifiedViews-Plugin-DevEnv_6b5c02_1a23dduv-dpu-helpers/src/main/java/eu/unifiedviews/helpers/dpu/extension/faulttolerance/FaultTolerance.java:131:169:SIC_INNER_SHOULD_BE_STATIC_NEEDS_THIS -#Null_Violation_Hunk:UnifiedViews-Plugin-DevEnv_878992_bcf189uv-dpu-helpers/src/main/java/eu/unifiedviews/helpers/dpu/extension/faulttolerance/FaultTolerance.java:131:169:SIC_INNER_SHOULD_BE_STATIC_NEEDS_THIS -#Illegal_Line_Position:UniTime-unitime_78be2f_616163JavaSource/org/unitime/timetable/onlinesectioning/custom/purdue/XEInterface.java:-1:-1:UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD -#Illegal_Line_Position:UniTime-unitime_78be2f_616163JavaSource/org/unitime/timetable/onlinesectioning/custom/purdue/XEInterface.java:-1:-1:UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:UniTime-unitime_78be2f_616163JavaSource/org/unitime/timetable/onlinesectioning/custom/purdue/XEInterface.java:254:254:UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:UniTime-unitime_78be2f_616163JavaSource/org/unitime/timetable/onlinesectioning/custom/purdue/XEInterface.java:254:254:UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:UniTime-unitime_78be2f_616163JavaSource/org/unitime/timetable/onlinesectioning/custom/purdue/XEInterface.java:233:233:UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:UniTime-unitime_78be2f_616163JavaSource/org/unitime/timetable/onlinesectioning/custom/purdue/XEInterface.java:254:254:UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:UniTime-unitime_78be2f_616163JavaSource/org/unitime/timetable/onlinesectioning/custom/purdue/XEInterface.java:98:98:UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:UniTime-unitime_78be2f_616163JavaSource/org/unitime/timetable/onlinesectioning/custom/purdue/XEInterface.java:100:100:UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD -#Illegal_Line_Position:UniTime-unitime_b6519b_292001JavaSource/org/unitime/timetable/onlinesectioning/custom/purdue/XEInterface.java:-1:-1:UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD -#Illegal_Line_Position:UniTime-unitime_b6519b_292001JavaSource/org/unitime/timetable/onlinesectioning/custom/purdue/XEInterface.java:-1:-1:UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:UniTime-unitime_b6519b_292001JavaSource/org/unitime/timetable/onlinesectioning/custom/purdue/XEInterface.java:280:280:UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:UniTime-unitime_b6519b_292001JavaSource/org/unitime/timetable/onlinesectioning/custom/purdue/XEInterface.java:111:111:UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:UniTime-unitime_b6519b_292001JavaSource/org/unitime/timetable/onlinesectioning/custom/purdue/XEInterface.java:113:113:UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:valis-vclang_2e3200_af3649src/main/java/com/jetbrains/jetpad/vclang/parser/BuildVisitor.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS -#Null_Violation_Hunk:valis-vclang_39adfe_bc233dsrc/main/java/com/jetbrains/jetpad/vclang/term/expr/InferHoleExpression.java:7:15:HE_INHERITS_EQUALS_USE_HASHCODE -#Illegal_Line_Position:valis-vclang_758c50_fff66asrc/main/java/com/jetbrains/jetpad/vclang/serialization/ModuleDeserialization.java:-1:-1:SE_BAD_FIELD -#Illegal_Line_Position:valis-vclang_758c50_fff66asrc/main/java/com/jetbrains/jetpad/vclang/serialization/ModuleDeserialization.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:valis-vclang_7942ed_b83444src/main/java/com/jetbrains/jetpad/vclang/parser/BuildVisitor.java:1:1:EQ_DOESNT_OVERRIDE_EQUALS 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-#Illegal_Line_Position:valis-vclang_fd4077_91ba71src/main/java/com/jetbrains/jetpad/vclang/serialization/ModuleDeserialization.java:-1:-1:SE_BAD_FIELD -#Null_Violation_Hunk:veraPDF-veraPDF-library_23b737_3be2d4modelimplementation/src/main/java/org/verapdf/model/impl/pb/xmp/schemas/PBXMPPredefinedSchema.java:35:35:UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:veraPDF-veraPDF-library_8b1871_0d8547modelimplementation/src/main/java/org/verapdf/model/impl/pb/xmp/schemas/PBXMPPredefinedSchema.java:35:35:UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD -#Null_Violation_Hunk:veraPDF-veraPDF-library_c68658_013c62modelimplementation/src/main/java/org/verapdf/model/impl/pb/xmp/schemas/PBXMPPredefinedSchema.java:35:35:UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD -#Illegal_Line_Position:veraPDF-veraPDF-library_c7ff64_e2ccb4modelimplementation/src/main/java/org/verapdf/model/impl/pb/xmp/schemas/PBXMPPredefinedSchema.java:-1:-1:MF_CLASS_MASKS_FIELD 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-prev_zendesk-maxwell_3fdf2a_23869dsrc#main#java#com#zendesk#maxwell#RowMap.java : 9 : 47 -prev_zendesk-maxwell_71a288_f50122src#main#java#com#zendesk#maxwell#MaxwellAbstractRowsEvent.java : 200 : 237 -prev_zendesk-maxwell_739033_e6c89bsrc#main#java#com#zendesk#maxwell#MaxwellAbstractRowsEvent.java : 199 : 233 -prev_zendesk-maxwell_8aec1e_534cf7src#main#java#com#zendesk#maxwell#RowMap.java : 9 : 47 -prev_zendesk-maxwell_9bb17d_2272b2src#main#java#com#zendesk#maxwell#MaxwellAbstractRowsEvent.java : 200 : 237 -prev_zendesk-maxwell_d9b984_d0f921src#main#java#com#zendesk#maxwell#RowMap.java : 9 : 47 -prev_zendesk-maxwell_e6c89b_8f1f0fsrc#main#java#com#zendesk#maxwell#MaxwellAbstractRowsEvent.java : 200 : 237 -prev_zendesk-maxwell_f50122_2c9ae7src#main#java#com#zendesk#maxwell#RowMap.java : 9 : 47 -CN_IMPLEMENTS_CLONE_BUT_NOT_CLONEABLE -prev_ClemsonRSRG-RESOLVE_9ee405_202d6dsrc#main#java#edu#clemson#cs#r2jt#absyn#FunctionArgList.java : 100 : 109 diff --git a/logs/Null.txt b/logs/Null.txt deleted file mode 100644 index 3b1b8cd..0000000 --- a/logs/Null.txt +++ /dev/null @@ -1,124 +0,0 @@ -1 - BC_VACUOUS_INSTANCEOF Ignore it. no source code, no source code change - CN_IDIOM_NO_SUPER_CALL Ignore it. no source code, no source code change - CN_IMPLEMENTS_CLONE_BUT_NOT_CLONEABLE Ignore it. no source code, no source code change - DLS_DEAD_LOCAL_STORE Ignore it. no source code, no source code change - DM_DEFAULT_ENCODING - DM_NUMBER_CTOR - DM_STRING_CTOR - DM_STRING_VOID_CTOR - DP_DO_INSIDE_DO_PRIVILEGED - EI_EXPOSE_REP - EQ_COMPARETO_USE_OBJECT_EQUALS - EQ_DOESNT_OVERRIDE_EQUALS - EQ_SELF_USE_OBJECT - HE_EQUALS_USE_HASHCODE - HE_HASHCODE_USE_OBJECT_EQUALS - HE_INHERITS_EQUALS_USE_HASHCODE - IS2_INCONSISTENT_SYNC - MS_CANNOT_BE_FINAL - MS_MUTABLE_ARRAY - MS_PKGPROTECT - MS_SHOULD_BE_FINAL - NM_CLASS_NAMING_CONVENTION - NM_CLASS_NOT_EXCEPTION - NM_SAME_SIMPLE_NAME_AS_SUPERCLASS - OBL_UNSATISFIED_OBLIGATION_EXCEPTION_EDGE - OS_OPEN_STREAM - OS_OPEN_STREAM_EXCEPTION_PATH - RI_REDUNDANT_INTERFACES - SA_FIELD_DOUBLE_ASSIGNMENT - SE_COMPARATOR_SHOULD_BE_SERIALIZABLE - SE_NO_SERIALVERSIONID - SIO_SUPERFLUOUS_INSTANCEOF - UCF_USELESS_CONTROL_FLOW - UG_SYNC_SET_UNSYNC_GET - UPM_UNCALLED_PRIVATE_METHOD - URF_UNREAD_FIELD - URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD - UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR - UWF_UNWRITTEN_FIELD - UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD - WMI_WRONG_MAP_ITERATOR --1 - CI_CONFUSED_INHERITANCE - CO_ABSTRACT_SELF - DMI_COLLECTION_OF_URLS - EQ_ABSTRACT_SELF - HE_SIGNATURE_DECLARES_HASHING_OF_UNHASHABLE_CLASS - JCIP_FIELD_ISNT_FINAL_IN_IMMUTABLE_CLASS - ME_MUTABLE_ENUM_FIELD - MF_CLASS_MASKS_FIELD - MS_CANNOT_BE_FINAL - MS_PKGPROTECT - MS_SHOULD_BE_FINAL - NM_FIELD_NAMING_CONVENTION - NM_SAME_SIMPLE_NAME_AS_INTERFACE - SE_BAD_FIELD - SE_TRANSIENT_FIELD_NOT_RESTORED - STCAL_STATIC_SIMPLE_DATE_FORMAT_INSTANCE - UPM_UNCALLED_PRIVATE_METHOD - UUF_UNUSED_FIELD - UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD - UWF_NULL_FIELD - UWF_UNWRITTEN_FIELD - UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD - VO_VOLATILE_REFERENCE_TO_ARRAY - - - - CI_CONFUSED_INHERITANCE change modifier of fields from protected to private or public, or remove final of class. - CO_ABSTRACT_SELF Interface, remove compareTo() method. - - SE_NO_SERIALVERSIONID add a field: serialVersionUID - EQ_ABSTRACT_SELF Interface, remove compareTo() method. - EQ_COMPARETO_USE_OBJECT_EQUALS: Update or Delete compareTo(), Add equals() - EQ_DOESNT_OVERRIDE_EQUALS override equals() - HE_SIGNATURE_DECLARES_HASHING_OF_UNHASHABLE_CLASS remove equals() only one instance - ME_MUTABLE_ENUM_FIELD enum, field add final. - MF_CLASS_MASKS_FIELD, change super class or delete the field with a same name in super class. - MS_SHOULD_BE_FINAL Add final key word - STCAL_STATIC_SIMPLE_DATE_FORMAT_INSTANCE remove public static final DateFormat DATE_FORMAT.... or SimpleDateFormat - UUF_UNUSED_FIELD remove unused fields. not sure - UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD field - UWF_NULL_FIELD update field, remove field - UWF_UNWRITTEN_FIELD field - UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD remove field - VO_VOLATILE_REFERENCE_TO_ARRAY field - - all GumTree results. class, field, method, //statements. - -NM_SAME_SIMPLE_NAME_AS_INTERFACE rename class name or remove super class -NM_SAME_SIMPLE_NAME_AS_SUPERCLASS, class name -NM_METHOD_NAMING_CONVENTION -NM_CLASS_NAMING_CONVENTION class name -NM_CLASS_NOT_EXCEPTION class name -RI_REDUNDANT_INTERFACES class implemented interface -SE_NO_SUITABLE_CONSTRUCTOR Serializable Class level remove Serializable interface and serialVersionUID - -SIC_INNER_SHOULD_BE_STATIC add static to inner class, not sure, delete it, 如果是匿名内部类，该如何处理？ ，其他的直接内部类的范围。 -SIC_INNER_SHOULD_BE_STATIC_NEEDS_THIS 同上 -=== -CO_ABSTRACT_SELF inner class -SE_INNER_CLASS inner class -SE_COMPARATOR_SHOULD_BE_SERIALIZABLE, inner class, 读definition -SE_BAD_FIELD_INNER_CLASS inner class -SIC_INNER_SHOULD_BE_STATIC_ANON inner class - -HE_INHERITS_EQUALS_USE_HASHCODE inner class or class -CN_IDIOM add clone method. or update clone method - -DM_NUMBER_CTOR multi v multi patches -EQ_COMPARETO_USE_OBJECT_EQUALS, the same as before -IC_INIT_CIRCULARITY, multi V, multi patches> - - - -SE_NO_SUITABLE_CONSTRUCTOR_FOR_EXTERNALIZATION, add a constructor or add public to old constructor, - - - -NP_NONNULL_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR - -SE_NO_SERIALVERSIONID change superclass or interface, add field or remove @SuppressWarnings("serial"), some are inner class - \ No newline at end of file diff --git a/logs/NullSourceCode.txt b/logs/NullSourceCode.txt deleted file mode 100644 index 75e1853..0000000 --- a/logs/NullSourceCode.txt +++ /dev/null @@ -1,1305 +0,0 @@ -UUF_UNUSED_FIELD : prev_0xCopy-RelaxFactory_aa9d34_931213rxf-couch#src#main#java#rxf#couch#driver#CouchMetaDriver.java : -1 : -1 -NM_FIELD_NAMING_CONVENTION : prev_aaron-santos-lanterna_4eac0e_33c490src#main#java#com#googlecode#lanterna#gui#component#TextGrid.java : -1 : -1 -NM_FIELD_NAMING_CONVENTION : 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prev_aeshell-aesh_1780ee_938c76src#test#java#org#jboss#aesh#console#aesh#AeshCommandDynamicTest.java : -1 : -1 -MS_CANNOT_BE_FINAL : prev_aherbert-GDSC-SMLM_b6538a_2db8f3src#main#java#gdsc#smlm#ij#utils#Utils.java : -1 : -1 -UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR : prev_aherbert-GDSC-SMLM_e23773_c6e912src#main#java#gdsc#smlm#fitting#function#gaussian#FreeCircularGaussian2DFunction.java : 59 : 59 -UWF_NULL_FIELD : prev_aherbert-GDSC-SMLM_f32d6c_47ab63src#main#java#gdsc#smlm#fitting#function#PoissonGammaGaussianLikelihoodWrapper.java : -1 : -1 -UWF_NULL_FIELD : prev_aherbert-GDSC-SMLM_f32d6c_47ab63src#main#java#gdsc#smlm#fitting#function#PoissonGaussianLikelihoodWrapper.java : -1 : -1 -UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD : prev_aht-group-ofx_0e06e8_180211core#src#main#java#org#openfuxml#renderer#latex#AbstractOfxLatexRenderer.java : 113 : 113 -EQ_ABSTRACT_SELF : prev_airlift-airlift_dd0c0a_a06897src#main#java#com#facebook#presto#Cursor.java : -1 : -1 -UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR : prev_alibaba-druid_3eb0b6_aaf1f2src#main#java#com#alibaba#druid#sql#ast#statement#SQLJoinTableSource.java : 73 : 73 -SE_TRANSIENT_FIELD_NOT_RESTORED : prev_allanbank-mongodb-async-driver_222a77_541915src#main#java#com#allanbank#mongodb#Credential.java : -1 : -1 -SE_TRANSIENT_FIELD_NOT_RESTORED : prev_allanbank-mongodb-async-driver_2df4f3_405b07src#main#java#com#allanbank#mongodb#MongoClientConfiguration.java : -1 : -1 -SE_TRANSIENT_FIELD_NOT_RESTORED : prev_allanbank-mongodb-async-driver_4481cc_2bbf92src#main#java#com#allanbank#mongodb#bson#impl#RootDocument.java : -1 : -1 -SE_BAD_FIELD : prev_allanbank-mongodb-async-driver_5ca324_112eb3src#main#java#com#allanbank#mongodb#bson#builder#impl#AbstractBuilder.java : -1 : -1 -CI_CONFUSED_INHERITANCE : prev_allanbank-mongodb-async-driver_98a1be_348fccsrc#main#java#com#allanbank#mongodb#connection#FutureCallback.java : -1 : -1 -CI_CONFUSED_INHERITANCE : 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-NP_LOAD_OF_KNOWN_NULL_VALUE -DM_NUMBER_CTOR -SIC_INNER_SHOULD_BE_STATIC -SBSC_USE_STRINGBUFFER_CONCATENATION -OS_OPEN_STREAM_EXCEPTION_PATH -NP_NONNULL_RETURN_VIOLATION -SF_SWITCH_NO_DEFAULT -UWF_UNWRITTEN_FIELD -DE_MIGHT_IGNORE -IS2_INCONSISTENT_SYNC -DM_BOXED_PRIMITIVE_FOR_PARSING -RV_RETURN_VALUE_IGNORED_NO_SIDE_EFFECT -ODR_OPEN_DATABASE_RESOURCE -PZLA_PREFER_ZERO_LENGTH_ARRAYS -RI_REDUNDANT_INTERFACES -NP_NULL_ON_SOME_PATH_FROM_RETURN_VALUE -UCF_USELESS_CONTROL_FLOW -UC_USELESS_CONDITION -NP_NULL_ON_SOME_PATH -UC_USELESS_OBJECT -DM_FP_NUMBER_CTOR -MS_PKGPROTECT -SQL_PREPARED_STATEMENT_GENERATED_FROM_NONCONSTANT_STRING -OBL_UNSATISFIED_OBLIGATION_EXCEPTION_EDGE -ES_COMPARING_STRINGS_WITH_EQ -OS_OPEN_STREAM -RCN_REDUNDANT_NULLCHECK_WOULD_HAVE_BEEN_A_NPE -NP_PARAMETER_MUST_BE_NONNULL_BUT_MARKED_AS_NULLABLE -SS_SHOULD_BE_STATIC -FE_FLOATING_POINT_EQUALITY -HE_EQUALS_USE_HASHCODE -DM_EXIT -NM_CONFUSING -LI_LAZY_INIT_STATIC -BX_UNBOXING_IMMEDIATELY_REBOXED -EQ_COMPARETO_USE_OBJECT_EQUALS -SQL_NONCONSTANT_STRING_PASSED_TO_EXECUTE -NP_NULL_ON_SOME_PATH_EXCEPTION -NP_UNWRITTEN_FIELD -MS_MUTABLE_COLLECTION_PKGPROTECT -UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD -CN_IMPLEMENTS_CLONE_BUT_NOT_CLONEABLE -DMI_HARDCODED_ABSOLUTE_FILENAME -SE_BAD_FIELD -DM_STRING_TOSTRING -UUF_UNUSED_FIELD -ICAST_INTEGER_MULTIPLY_CAST_TO_LONG -EC_UNRELATED_TYPES -BC_VACUOUS_INSTANCEOF -ICAST_IDIV_CAST_TO_DOUBLE -RCN_REDUNDANT_NULLCHECK_OF_NULL_VALUE -ES_COMPARING_PARAMETER_STRING_WITH_EQ -RV_RETURN_VALUE_IGNORED -CI_CONFUSED_INHERITANCE -DB_DUPLICATE_SWITCH_CLAUSES -ODR_OPEN_DATABASE_RESOURCE_EXCEPTION_PATH -NP_ALWAYS_NULL -RpC_REPEATED_CONDITIONAL_TEST -SE_BAD_FIELD_STORE -NP_NULL_PARAM_DEREF -GC_UNRELATED_TYPES -DLS_DEAD_LOCAL_STORE_OF_NULL -RC_REF_COMPARISON_BAD_PRACTICE -MS_MUTABLE_ARRAY -SE_INNER_CLASS -UL_UNRELEASED_LOCK_EXCEPTION_PATH -SE_COMPARATOR_SHOULD_BE_SERIALIZABLE -CN_IDIOM_NO_SUPER_CALL -NP_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD -UC_USELESS_VOID_METHOD -NP_NONNULL_PARAM_VIOLATION -DMI_INVOKING_TOSTRING_ON_ARRAY -DP_DO_INSIDE_DO_PRIVILEGED -SF_SWITCH_FALLTHROUGH -NP_BOOLEAN_RETURN_NULL -NM_CLASS_NOT_EXCEPTION -SIO_SUPERFLUOUS_INSTANCEOF -NP_GUARANTEED_DEREF - -UL_UNRELEASED_LOCK -IP_PARAMETER_IS_DEAD_BUT_OVERWRITTEN -HE_INHERITS_EQUALS_USE_HASHCODE -MS_CANNOT_BE_FINAL -DB_DUPLICATE_BRANCHES -STCAL_INVOKE_ON_STATIC_DATE_FORMAT_INSTANCE -MS_MUTABLE_COLLECTION -IL_INFINITE_RECURSIVE_LOOP -VO_VOLATILE_INCREMENT -JLM_JSR166_UTILCONCURRENT_MONITORENTER -NP_NULL_PARAM_DEREF_NONVIRTUAL -DM_STRING_CTOR -UR_UNINIT_READ -XFB_XML_FACTORY_BYPASS -RV_EXCEPTION_NOT_THROWN -UI_INHERITANCE_UNSAFE_GETRESOURCE -VA_FORMAT_STRING_EXTRA_ARGUMENTS_PASSED -IT_NO_SUCH_ELEMENT -NM_CLASS_NAMING_CONVENTION -RC_REF_COMPARISON -RC_REF_COMPARISON_BAD_PRACTICE_BOOLEAN -DLS_DEAD_LOCAL_STORE_SHADOWS_FIELD -HE_EQUALS_NO_HASHCODE -NS_NON_SHORT_CIRCUIT -NP_DEREFERENCE_OF_READLINE_VALUE -NP_GUARANTEED_DEREF_ON_EXCEPTION_PATH -EQ_DOESNT_OVERRIDE_EQUALS -DM_STRING_VOID_CTOR -DP_CREATE_CLASSLOADER_INSIDE_DO_PRIVILEGED -BIT_SIGNED_CHECK -ME_ENUM_FIELD_SETTER -BC_EQUALS_METHOD_SHOULD_WORK_FOR_ALL_OBJECTS -NS_DANGEROUS_NON_SHORT_CIRCUIT -NP_EQUALS_SHOULD_HANDLE_NULL_ARGUMENT -SR_NOT_CHECKED -RR_NOT_CHECKED -UUF_UNUSED_PUBLIC_OR_PROTECTED_FIELD -VA_FORMAT_STRING_MISSING_ARGUMENT -EC_BAD_ARRAY_COMPARE -NP_NONNULL_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR -DM_BOXED_PRIMITIVE_FOR_COMPARE -NP_NULL_ON_SOME_PATH_MIGHT_BE_INFEASIBLE -UMAC_UNCALLABLE_METHOD_OF_ANONYMOUS_CLASS -UWF_NULL_FIELD -CO_COMPARETO_INCORRECT_FLOATING -NP_NULL_PARAM_DEREF_ALL_TARGETS_DANGEROUS -NO_NOTIFY_NOT_NOTIFYALL -SC_START_IN_CTOR -RV_RETURN_VALUE_IGNORED_INFERRED -UM_UNNECESSARY_MATH -SA_FIELD_SELF_ASSIGNMENT -BC_IMPOSSIBLE_CAST -LI_LAZY_INIT_UPDATE_STATIC -NP_TOSTRING_COULD_RETURN_NULL -SIC_INNER_SHOULD_BE_STATIC_NEEDS_THIS -AT_OPERATION_SEQUENCE_ON_CONCURRENT_ABSTRACTION -EQ_UNUSUAL -SE_NO_SUITABLE_CONSTRUCTOR -UW_UNCOND_WAIT -MF_CLASS_MASKS_FIELD -FE_TEST_IF_EQUAL_TO_NOT_A_NUMBER -IA_AMBIGUOUS_INVOCATION_OF_INHERITED_OR_OUTER_METHOD -SE_BAD_FIELD_INNER_CLASS -RV_NEGATING_RESULT_OF_COMPARETO -ISC_INSTANTIATE_STATIC_CLASS -HE_HASHCODE_USE_OBJECT_EQUALS -DM_BOOLEAN_CTOR -DMI_RANDOM_USED_ONLY_ONCE -EQ_CHECK_FOR_OPERAND_NOT_COMPATIBLE_WITH_THIS -DM_GC -NM_SAME_SIMPLE_NAME_AS_SUPERCLASS -EC_NULL_ARG -EQ_SELF_USE_OBJECT -RV_ABSOLUTE_VALUE_OF_RANDOM_INT -SE_NO_SUITABLE_CONSTRUCTOR_FOR_EXTERNALIZATION -MS_EXPOSE_REP -SE_TRANSIENT_FIELD_NOT_RESTORED -IM_AVERAGE_COMPUTATION_COULD_OVERFLOW -NP_METHOD_PARAMETER_TIGHTENS_ANNOTATION -NP_METHOD_RETURN_RELAXING_ANNOTATION -UG_SYNC_SET_UNSYNC_GET -NM_FIELD_NAMING_CONVENTION -MS_OOI_PKGPROTECT -UCF_USELESS_CONTROL_FLOW_NEXT_LINE -VA_FORMAT_STRING_BAD_CONVERSION -BX_BOXING_IMMEDIATELY_UNBOXED_TO_PERFORM_COERCION -SA_FIELD_DOUBLE_ASSIGNMENT -BC_BAD_CAST_TO_CONCRETE_COLLECTION -SF_DEAD_STORE_DUE_TO_SWITCH_FALLTHROUGH -MS_FINAL_PKGPROTECT -DMI_COLLECTION_OF_URLS -INT_BAD_COMPARISON_WITH_SIGNED_BYTE -RV_CHECK_FOR_POSITIVE_INDEXOF -RE_CANT_USE_FILE_SEPARATOR_AS_REGULAR_EXPRESSION -RU_INVOKE_RUN -BC_IMPOSSIBLE_DOWNCAST_OF_TOARRAY -ICAST_BAD_SHIFT_AMOUNT -ICAST_INT_CAST_TO_FLOAT_PASSED_TO_ROUND -DM_BOXED_PRIMITIVE_TOSTRING -UR_UNINIT_READ_CALLED_FROM_SUPER_CONSTRUCTOR -WA_NOT_IN_LOOP -CN_IDIOM -DMI_BLOCKING_METHODS_ON_URL -EC_UNRELATED_CLASS_AND_INTERFACE -SWL_SLEEP_WITH_LOCK_HELD -IM_BAD_CHECK_FOR_ODD -RE_POSSIBLE_UNINTENDED_PATTERN -INT_BAD_COMPARISON_WITH_NONNEGATIVE_VALUE -ICAST_INT_CAST_TO_DOUBLE_PASSED_TO_CEIL -EQ_OVERRIDING_EQUALS_NOT_SYMMETRIC -LG_LOST_LOGGER_DUE_TO_WEAK_REFERENCE -DLS_DEAD_LOCAL_STORE_IN_RETURN -J2EE_STORE_OF_NON_SERIALIZABLE_OBJECT_INTO_SESSION -NP_STORE_INTO_NONNULL_FIELD -RANGE_ARRAY_INDEX -IL_INFINITE_LOOP -DC_DOUBLECHECK -NN_NAKED_NOTIFY -EC_UNRELATED_TYPES_USING_POINTER_EQUALITY -SE_PRIVATE_READ_RESOLVE_NOT_INHERITED -INT_VACUOUS_BIT_OPERATION -DM_NEXTINT_VIA_NEXTDOUBLE -VA_FORMAT_STRING_ILLEGAL -DMI_INVOKING_HASHCODE_ON_ARRAY -RV_DONT_JUST_NULL_CHECK_READLINE -RE_BAD_SYNTAX_FOR_REGULAR_EXPRESSION -SA_LOCAL_SELF_ASSIGNMENT_INSTEAD_OF_FIELD -NM_VERY_CONFUSING -MSF_MUTABLE_SERVLET_FIELD -BC_IMPOSSIBLE_INSTANCEOF -SA_LOCAL_SELF_COMPARISON -SA_LOCAL_SELF_ASSIGNMENT -IC_SUPERCLASS_USES_SUBCLASS_DURING_INITIALIZATION -CNT_ROUGH_CONSTANT_VALUE -SI_INSTANCE_BEFORE_FINALS_ASSIGNED -DLS_DEAD_STORE_OF_CLASS_LITERAL -RV_ABSOLUTE_VALUE_OF_HASHCODE -NM_SAME_SIMPLE_NAME_AS_INTERFACE -HE_HASHCODE_NO_EQUALS -DM_NEW_FOR_GETCLASS -SA_FIELD_SELF_COMPARISON -NM_METHOD_CONSTRUCTOR_CONFUSION -EQ_COMPARING_CLASS_NAMES -UC_USELESS_CONDITION_TYPE -RV_01_TO_INT -SA_LOCAL_DOUBLE_ASSIGNMENT -SQL_BAD_RESULTSET_ACCESS -EQ_GETCLASS_AND_CLASS_CONSTANT -BSHIFT_WRONG_ADD_PRIORITY -HRS_REQUEST_PARAMETER_TO_HTTP_HEADER -DMI_USING_REMOVEALL_TO_CLEAR_COLLECTION -STCAL_STATIC_SIMPLE_DATE_FORMAT_INSTANCE -FI_FINALIZER_NULLS_FIELDS -ML_SYNC_ON_FIELD_TO_GUARD_CHANGING_THAT_FIELD -JCIP_FIELD_ISNT_FINAL_IN_IMMUTABLE_CLASS -CO_COMPARETO_RESULTS_MIN_VALUE -IMSE_DONT_CATCH_IMSE -QF_QUESTIONABLE_FOR_LOOP -MWN_MISMATCHED_NOTIFY -RV_RETURN_VALUE_OF_PUTIFABSENT_IGNORED -DMI_NONSERIALIZABLE_OBJECT_WRITTEN -BC_BAD_CAST_TO_ABSTRACT_COLLECTION -SW_SWING_METHODS_INVOKED_IN_SWING_THREAD -EC_ARRAY_AND_NONARRAY -NP_NULL_INSTANCEOF -MTIA_SUSPECT_SERVLET_INSTANCE_FIELD -EQ_ALWAYS_FALSE -INT_BAD_COMPARISON_WITH_INT_VALUE -NP_OPTIONAL_RETURN_NULL -BX_BOXING_IMMEDIATELY_UNBOXED -VA_FORMAT_STRING_EXPECTED_MESSAGE_FORMAT_SUPPLIED -BIT_IOR -FI_MISSING_SUPER_CALL -VO_VOLATILE_REFERENCE_TO_ARRAY -SF_DEAD_STORE_DUE_TO_SWITCH_FALLTHROUGH_TO_THROW -DMI_CONSTANT_DB_PASSWORD -NP_IMMEDIATE_DEREFERENCE_OF_READLINE -ML_SYNC_ON_UPDATED_FIELD -HE_USE_OF_UNHASHABLE_CLASS -FI_PUBLIC_SHOULD_BE_PROTECTED -DMI_BIGDECIMAL_CONSTRUCTED_FROM_DOUBLE -TQ_NEVER_VALUE_USED_WHERE_ALWAYS_REQUIRED -XSS_REQUEST_PARAMETER_TO_SERVLET_WRITER -NP_ALWAYS_NULL_EXCEPTION -DM_INVALID_MIN_MAX -NM_WRONG_PACKAGE -MS_SHOULD_BE_REFACTORED_TO_BE_FINAL -DC_PARTIALLY_CONSTRUCTED -WA_AWAIT_NOT_IN_LOOP -INT_VACUOUS_COMPARISON -RV_CHECK_COMPARETO_FOR_SPECIFIC_RETURN_VALUE -RCN_REDUNDANT_COMPARISON_OF_NULL_AND_NONNULL_VALUE -DL_SYNCHRONIZATION_ON_SHARED_CONSTANT -EQ_ALWAYS_TRUE -DMI_EMPTY_DB_PASSWORD -DMI_ENTRY_SETS_MAY_REUSE_ENTRY_OBJECTS -WL_USING_GETCLASS_RATHER_THAN_CLASS_LITERAL -FI_USELESS -VA_FORMAT_STRING_BAD_CONVERSION_FROM_ARRAY -SP_SPIN_ON_FIELD -BOA_BADLY_OVERRIDDEN_ADAPTER -MWN_MISMATCHED_WAIT -NP_CLONE_COULD_RETURN_NULL -CO_ABSTRACT_SELF -DMI_COLLECTIONS_SHOULD_NOT_CONTAIN_THEMSELVES -QBA_QUESTIONABLE_BOOLEAN_ASSIGNMENT -IC_INIT_CIRCULARITY -ICAST_INT_2_LONG_AS_INSTANT -FI_EXPLICIT_INVOCATION -ME_MUTABLE_ENUM_FIELD -RCN_REDUNDANT_COMPARISON_TWO_NULL_VALUES -HE_SIGNATURE_DECLARES_HASHING_OF_UNHASHABLE_CLASS -RS_READOBJECT_SYNC -SQL_BAD_PREPARED_STATEMENT_ACCESS -VA_FORMAT_STRING_BAD_CONVERSION_TO_BOOLEAN -EQ_ABSTRACT_SELF -NP_CLOSING_NULL -RV_REM_OF_HASHCODE -PT_RELATIVE_PATH_TRAVERSAL -TLW_TWO_LOCK_WAIT -INT_BAD_REM_BY_1 -ICAST_QUESTIONABLE_UNSIGNED_RIGHT_SHIFT -VA_PRIMITIVE_ARRAY_PASSED_TO_OBJECT_VARARG -DM_USELESS_THREAD -DMI_DOH -IJU_ASSERT_METHOD_INVOKED_FROM_RUN_METHOD -BIT_IOR_OF_SIGNED_BYTE -DMI_THREAD_PASSED_WHERE_RUNNABLE_EXPECTED -SA_LOCAL_SELF_COMPUTATION - This method performs a nonsensical computation of a local variable with another reference to the same variable (e.g., x&x or x-x). - Because of the nature of the computation, this operation doesn't seem to make sense, and may indicate a typo or a logic error. Double check the computation. -IM_MULTIPLYING_RESULT_OF_IREM - The code multiplies the result of an integer remaining by an integer constant. - Be sure you don't have your operator precedence confused. For example i % 60 * 1000 is (i % 60) * 1000, not i % (60 * 1000). -MS_MUTABLE_HASHTABLE - Field is a mutable Hashtable (MS_MUTABLE_HASHTABLE) - A final static field references a Hashtable and can be accessed by malicious code or by accident from another package. - This code can freely modify the contents of the Hashtable. \ No newline at end of file diff --git a/logs/myLog.log b/logs/myLog.log deleted file mode 100644 index e69de29..0000000 diff --git a/pom.xml b/pom.xml index 016c216..20628f7 100644 --- a/pom.xml +++ b/pom.xml @@ -25,11 +25,11 @@ 1.2 - - edu.lu.uni - simple-utils - 0.0.1-SNAPSHOT - + + + + + @@ -69,17 +69,12 @@ ${logback.version} + - + - - - edu.lu.uni.serval - GitTraveller - 0.0.1-SNAPSHOT - junit diff --git a/src/main/java/edu/lu/uni/serval/FixPattern/utils/CNodeMap.java b/src/main/java/edu/lu/uni/serval/FixPattern/utils/CNodeMap.java deleted file mode 100644 index 648449c..0000000 --- a/src/main/java/edu/lu/uni/serval/FixPattern/utils/CNodeMap.java +++ /dev/null @@ -1,101 +0,0 @@ -package edu.lu.uni.serval.FixPattern.utils; - -import java.util.HashMap; -import java.util.Map; - -public class CNodeMap { - - public static Map map; - - static { - map = new HashMap(); - map.put(20100,"Left"); - map.put(30100,"ActMisc"); - map.put(40000,"FullType"); - map.put(50000,"TypeQualifier"); - map.put(60100,"BaseType"); - map.put(60200,"Pointer"); - map.put(60800,"EnumName"); - map.put(60900,"StructUnionName"); - map.put(61000,"TypeName"); - map.put(70002,"SizeType"); - map.put(70100,"IntType"); - map.put(80001,"CChar"); - map.put(80100,"Si"); - map.put(90002,"UnSigned"); - map.put(100003,"CInt"); - map.put(200000,"ParamList"); - map.put(210000,"DotsParameter"); - map.put(220100,"ParameterType"); - map.put(240100,"Ident"); - map.put(240200,"Constant"); - map.put(240400,"FunCall"); - map.put(240500,"CondExpr"); - map.put(240600,"Sequence"); - map.put(240700,"Assignment"); - map.put(240800,"Postfix"); - map.put(240900,"Infix"); - map.put(241000,"Unary"); - map.put(241100,"Binary"); - map.put(241200,"ArrayAccess"); - map.put(241300,"RecordAccess"); - map.put(241400,"RecordPtAccess"); - map.put(241500,"SizeOfExpr"); - map.put(241600,"SizeOfType"); - map.put(241700,"Cast"); - map.put(241900,"Constructor"); - map.put(242000,"ParenExpr"); - map.put(260300,"ExprStatement"); - map.put(260800,"Asm"); - map.put(270100,"Label"); - map.put(270200,"Case"); - map.put(270300,"CaseRange"); - map.put(270400,"Default"); - map.put(280001,"Continue"); - map.put(280002,"Break"); - map.put(280003,"Return"); - map.put(280100,"Goto"); - map.put(280200,"ReturnExpr"); - map.put(290001,"None"); - map.put(290100,"Some"); - map.put(300100,"If"); - map.put(300200,"Switch"); - map.put(310100,"While"); - map.put(310200,"DoWhile"); - map.put(310300,"For"); - map.put(310400,"MacroIteration"); - map.put(330000,"Compound"); - map.put(340000,"Storage"); - map.put(350100,"DeclList"); - map.put(350200,"MacroDecl"); - map.put(360100,"InitExpr"); - map.put(360200,"InitList"); - map.put(360300,"InitDesignators"); - map.put(370100,"DesignatorField"); - map.put(370200,"DesignatorIndex"); - map.put(370300,"DesignatorRange"); - map.put(380000,"Definition"); - map.put(400100,"Define"); - map.put(400200,"Include"); - map.put(400400,"OtherDirective"); - map.put(410001,"DefineVar"); - map.put(410002,"Undef"); - map.put(410100,"DefineFunc"); - map.put(420001,"DefineEmpty"); - map.put(420100,"DefineExpr"); - map.put(420200,"DefineStmt"); - map.put(420400,"DefineDoWhileZero"); - map.put(420600,"DefineInit"); - map.put(440100,"IfdefDirective"); - map.put(450100,"Declaration"); - map.put(450200,"Definition"); - map.put(450300,"CppTop"); - map.put(450400,"IfdefTop"); - map.put(450700,"NotParsedCorrectly"); - map.put(450800,"FinalDef"); - map.put(460000,"Program"); - map.put(470000,"GenericList"); - map.put(480000,"GenericString"); - map.put(490100,"IfToken"); - } -} diff --git a/src/main/java/edu/lu/uni/serval/FixPattern/utils/EDiff.java b/src/main/java/edu/lu/uni/serval/FixPattern/utils/EDiff.java new file mode 100644 index 0000000..acec7ff --- /dev/null +++ b/src/main/java/edu/lu/uni/serval/FixPattern/utils/EDiff.java @@ -0,0 +1,98 @@ +package edu.lu.uni.serval.FixPattern.utils; + +import com.github.gumtreediff.actions.model.*; +import com.github.gumtreediff.tree.ITree; +import com.github.gumtreediff.tree.TreeContext; +import edu.lu.uni.serval.gumtree.regroup.HierarchicalActionSet; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import redis.clients.jedis.Jedis; +import redis.clients.jedis.JedisPool; + +import java.io.IOException; +import java.util.List; + +/** + * Created by anilkoyuncu on 17/09/2018. + */ +public class EDiff { + private static Logger log = LoggerFactory.getLogger(EDiff.class); + public static ITree getSimpliedTree(String fn, JedisPool outerPool) { + + ITree tree = null; + Jedis inner = null; + try { + inner = outerPool.getResource(); + while (!inner.ping().equals("PONG")){ + log.info("wait"); + } + inner.select(1); + String dist2load = inner.get(fn); + inner.select(0); + String s = inner.get(dist2load); + HierarchicalActionSet actionSet = (HierarchicalActionSet) EDiffHelper.fromString(s); + + ITree parent = null; + ITree children =null; + TreeContext tc = new TreeContext(); + tree = EDiffHelper.getASTTree(actionSet, parent, children,tc); + tree.setParent(null); + tc.validate(); + + } catch (IOException e) { + e.printStackTrace(); + } catch (ClassNotFoundException e) { + e.printStackTrace(); + }finally { + if (inner != null) { + inner.close(); + } + } + return tree; + + } + public static ITree getActionTree(HierarchicalActionSet actionSet, ITree parent, ITree children,TreeContext tc){ + + int newType = 0; + + Action action = actionSet.getAction(); + if (action instanceof Update){ + newType = 101; + }else if(action instanceof Insert){ + newType =100; + }else if(action instanceof Move){ + newType = 102; + }else if(action instanceof Delete){ + newType=103; + }else{ + new Exception("unknow action"); + } + if(actionSet.getParent() == null){ + //root + + parent = tc.createTree(newType, "", null); + tc.setRoot(parent); + +// parent = new Tree(newType,""); + }else{ + children = tc.createTree(newType, "", null); + children.setParentAndUpdateChildren(parent); +// children = new Tree(newType,""); +// parent.addChild(children); + } + List subActions = actionSet.getSubActions(); + if (subActions.size() != 0){ + for (HierarchicalActionSet subAction : subActions) { + + if(actionSet.getParent() == null){ + children = parent; + } + getActionTree(subAction,children,null,tc); + + } + + + } + return parent; + } +} diff --git a/src/main/java/edu/lu/uni/serval/FixPattern/utils/EDiffHelper.java b/src/main/java/edu/lu/uni/serval/FixPattern/utils/EDiffHelper.java new file mode 100644 index 0000000..b6f7980 --- /dev/null +++ b/src/main/java/edu/lu/uni/serval/FixPattern/utils/EDiffHelper.java @@ -0,0 +1,88 @@ +package edu.lu.uni.serval.FixPattern.utils; + +import com.github.gumtreediff.tree.ITree; +import com.github.gumtreediff.tree.TreeContext; +import edu.lu.uni.serval.gumtree.regroup.HierarchicalActionSet; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.io.*; +import java.util.Base64; +import java.util.List; +import java.util.Map; +import java.util.Objects; +import java.util.stream.Collectors; + +/** + * Created by anilkoyuncu on 17/09/2018. + */ +public class EDiffHelper { + private static Logger log = LoggerFactory.getLogger(EDiffHelper.class); + /** Read the object from Base64 string. */ + public static Object fromString( String s ) throws IOException, + ClassNotFoundException { + byte [] data = Base64.getDecoder().decode( s ); + ObjectInputStream ois = new ObjectInputStream( + new ByteArrayInputStream( data ) ); + Object o = ois.readObject(); + ois.close(); + return o; + } + + /** Write the object to a Base64 string. */ + public static String toString( Serializable o ) throws IOException { + ByteArrayOutputStream baos = new ByteArrayOutputStream(); + ObjectOutputStream oos = new ObjectOutputStream( baos ); + oos.writeObject( o ); + oos.close(); + return Base64.getEncoder().encodeToString(baos.toByteArray()); + } + + public static ITree getASTTree(HierarchicalActionSet actionSet, ITree parent, ITree children, TreeContext tc){ + + int newType = 0; + + String astNodeType = actionSet.getAstNodeType(); + List keysByValue = getKeysByValue(ASTNodeMap.map, astNodeType); + + if(keysByValue.size() != 1){ + log.error("More than 1"); + } + newType = keysByValue.get(0); + if(actionSet.getParent() == null){ + //root + +// parent = new Tree(newType,""); + parent = tc.createTree(newType, "", null); + tc.setRoot(parent); + }else{ +// children = new Tree(newType,""); +// parent.addChild(children); + children = tc.createTree(newType, "", null); + children.setParentAndUpdateChildren(parent); + } + List subActions = actionSet.getSubActions(); + if (subActions.size() != 0){ + for (HierarchicalActionSet subAction : subActions) { + + if(actionSet.getParent() == null){ + children = parent; + } + getASTTree(subAction,children,null,tc); + + } + + + } + return parent; + } + + + public static List getKeysByValue(Map map, E value) { + return map.entrySet() + .stream() + .filter(entry -> Objects.equals(entry.getValue(), value)) + .map(Map.Entry::getKey) + .collect(Collectors.toList()); + } +} diff --git a/src/main/java/edu/lu/uni/serval/FixPattern/utils/PoolBuilder.java b/src/main/java/edu/lu/uni/serval/FixPattern/utils/PoolBuilder.java new file mode 100644 index 0000000..fba3f04 --- /dev/null +++ b/src/main/java/edu/lu/uni/serval/FixPattern/utils/PoolBuilder.java @@ -0,0 +1,33 @@ +package edu.lu.uni.serval.FixPattern.utils; + +import redis.clients.jedis.JedisPoolConfig; + +import java.time.Duration; + +/** + * Created by anilkoyuncu on 17/09/2018. + */ +public class PoolBuilder { + public static JedisPoolConfig getPoolConfig() { + return poolConfig; + } + + static final JedisPoolConfig poolConfig = buildPoolConfig(); + + + private static JedisPoolConfig buildPoolConfig() { + final JedisPoolConfig poolConfig = new JedisPoolConfig(); + poolConfig.setMaxTotal(128); + poolConfig.setMaxIdle(128); + poolConfig.setMinIdle(16); + poolConfig.setTestOnBorrow(true); + poolConfig.setTestOnReturn(true); + poolConfig.setTestWhileIdle(true); + poolConfig.setMinEvictableIdleTimeMillis(Duration.ofMinutes(60).toMillis()); + poolConfig.setTimeBetweenEvictionRunsMillis(Duration.ofHours(30).toMillis()); + poolConfig.setNumTestsPerEvictionRun(3); + poolConfig.setBlockWhenExhausted(true); + + return poolConfig; + } +} diff --git a/src/main/java/edu/lu/uni/serval/FixPatternParser/CUCreator.java b/src/main/java/edu/lu/uni/serval/FixPatternParser/CUCreator.java index f495837..ec47e1a 100644 --- a/src/main/java/edu/lu/uni/serval/FixPatternParser/CUCreator.java +++ b/src/main/java/edu/lu/uni/serval/FixPatternParser/CUCreator.java @@ -1,15 +1,11 @@ package edu.lu.uni.serval.FixPatternParser; -import java.io.BufferedReader; -import java.io.File; -import java.io.FileNotFoundException; -import java.io.FileReader; -import java.io.IOException; - import org.eclipse.jdt.core.dom.AST; import org.eclipse.jdt.core.dom.ASTParser; import org.eclipse.jdt.core.dom.CompilationUnit; +import java.io.*; + /** * Creator of a CompilationUnit. * diff --git a/src/main/java/edu/lu/uni/serval/FixPatternParser/Parser.java b/src/main/java/edu/lu/uni/serval/FixPatternParser/Parser.java index fe86e18..2b7367b 100644 --- a/src/main/java/edu/lu/uni/serval/FixPatternParser/Parser.java +++ b/src/main/java/edu/lu/uni/serval/FixPatternParser/Parser.java @@ -1,19 +1,6 @@ package edu.lu.uni.serval.FixPatternParser; import java.io.File; -import java.util.ArrayList; -import java.util.List; -import java.util.Locale; - -import com.github.gumtreediff.actions.model.Action; -import com.github.gumtreediff.actions.model.Move; -import com.github.gumtreediff.tree.ITree; - -import edu.lu.uni.serval.gumtree.GumTreeComparer; -import edu.lu.uni.serval.gumtree.regroup.ActionFilter; -import edu.lu.uni.serval.gumtree.regroup.HierarchicalActionSet; -import edu.lu.uni.serval.gumtree.regroup.HierarchicalRegrouper; -import edu.lu.uni.serval.gumtree.regroup.SimplifyTree; /** * Parse fix patterns with GumTree. @@ -33,435 +20,7 @@ public abstract class Parser implements ParserInterface { public abstract void parseFixPatterns(File prevFile, File revFile, File diffEntryFile,String project); - protected List parseChangedSourceCodeWithGumTree(File prevFile, File revFile) { - List actionSets = new ArrayList<>(); - // GumTree results - List gumTreeResults = new GumTreeComparer().compareTwoFilesWithGumTree(prevFile, revFile); -// List gumTreeResults = new GumTreeComparer().compareTwoFilesWithGumTreeForCCode(prevFile, revFile); - if (gumTreeResults != null && gumTreeResults.size() > 0) { - // Regroup GumTre results. - List allActionSets = new HierarchicalRegrouper().regroupGumTreeResults(gumTreeResults); - - // Filter out modified actions of changing method names, method parameters, variable names and field names in declaration part. - // TODO: variable effects range, sub-actions are these kinds of modification? - actionSets.addAll(new ActionFilter().filterOutUselessActions(allActionSets)); - } - - return actionSets; - } - - protected List getFirstAndLastMoveAction(HierarchicalActionSet gumTreeResult) { - List firstAndLastMoveActions = new ArrayList<>(); - List actions = gumTreeResult.getSubActions(); - if (actions.size() == 0) { - return null; - } - Move firstMoveAction = null; - Move lastMoveAction = null; - while (actions.size() > 0) { - List subActions = new ArrayList<>(); - for (HierarchicalActionSet action : actions) { - subActions.addAll(action.getSubActions()); - if (action.toString().startsWith("MOV")) { - if (firstMoveAction == null) { - firstMoveAction = (Move) action.getAction(); - lastMoveAction = (Move) action.getAction(); - } else { - int startPosition = action.getStartPosition(); - int length = action.getLength(); - int startPositionFirst = firstMoveAction.getPosition(); - int startPositionLast = lastMoveAction.getPosition(); - int lengthLast = lastMoveAction.getNode().getLength(); - if (startPosition < startPositionFirst || (startPosition == startPositionFirst && length > firstMoveAction.getLength())) { - firstMoveAction = (Move) action.getAction(); - } - if ((startPosition + length) > (startPositionLast + lengthLast)) { - lastMoveAction = (Move) action.getAction(); - } - } - } - } - - actions.clear(); - actions.addAll(subActions); - } - if (firstMoveAction == null) { - return null; - } - firstAndLastMoveActions.add(firstMoveAction); - firstAndLastMoveActions.add(lastMoveAction); - return firstAndLastMoveActions; - } - - protected String getSemiSourceCodeEditScripts(HierarchicalActionSet actionSet) { - // TODO Auto-generated method stub - return null; - } - protected String getAbstractIdentifiersEditScripts(HierarchicalActionSet actionSet) { - // TODO Auto-generated method stub - return null; - } - - protected String getRawTokenEditScripts(HierarchicalActionSet actionSet) { - // TODO Auto-generated method stub - return null; - } - - protected int getEndPosition(List children) { - int endPosition = 0; - for (ITree child : children) { - if (child.getLabel().endsWith("Body")) { - endPosition = child.getPos() - 1; - break; - } - } - return endPosition; - } - - /** - * Get the AST node based edit script of patches in terms of breadth first. - * - * @param actionSet - * @return - */ - protected String getASTEditScriptsBreadthFirst(HierarchicalActionSet actionSet) { - String editScript = ""; - - List actionSets = new ArrayList<>(); - actionSets.add(actionSet); - while (actionSets.size() != 0) { - List subSets = new ArrayList<>(); - for (HierarchicalActionSet set : actionSets) { - subSets.addAll(set.getSubActions()); - String actionStr = set.getActionString(); - int index = actionStr.indexOf("@@"); - String singleEdit = actionStr.substring(0, index).replace(" ", ""); - - singleEdit = handleSimpleNameNode(singleEdit, actionStr, index); - - editScript += singleEdit + " "; - } - actionSets.clear(); - actionSets.addAll(subSets); - } - return editScript; - } - - private String handleSimpleNameNode(String singleEdit, String actionStr, int index) { - // TODO - if (singleEdit.endsWith("SimpleName")) { - actionStr = actionStr.substring(index + 2); - if (actionStr.startsWith("MethodName")) { - singleEdit = singleEdit.replace("SimpleName", "MethodName"); - } else if (actionStr.startsWith("ClassName")) { - singleEdit = singleEdit.replace("SimpleName", "ClassName"); - } else { - if (actionStr.startsWith("Name")) { - char c = actionStr.charAt(5); - if (Character.isUpperCase(c)) { - singleEdit = singleEdit.replace("SimpleName", "Name"); - } else { - singleEdit = singleEdit.replace("SimpleName", "Variable"); - } - } else { - singleEdit = singleEdit.replace("SimpleName", "Variable"); - } - } - } - return singleEdit; - } - - /** - * Get the AST node based edit script of patches in terms of deep first. - * - * @param actionSet - * @return - */ - protected String getASTEditScriptsDeepFirst(HierarchicalActionSet actionSet) { - String editScript = ""; - String actionStr = actionSet.getActionString(); - int index = actionStr.indexOf("@@"); - String singleEdit = actionStr.substring(0, index).replace(" ", ""); - - singleEdit = handleSimpleNameNode(singleEdit, actionStr, index); - - editScript = singleEdit + " "; - - List subActionSets = actionSet.getSubActions();; - for (HierarchicalActionSet subActionSet : subActionSets) { - editScript += getASTEditScriptsDeepFirst(subActionSet); - } - return editScript; - } - - /** - * - * @param hunkActionSets - * @param bugStartLine - * @param bugEndLine - * @param fixStartLine - * @param fixEndLine - * @return - */ - protected String getASTEditScriptsBreadthFirst(List hunkActionSets, int bugEndPosition, int fixEndPosition) { - String editScript = ""; - - for (HierarchicalActionSet hunkActionSet : hunkActionSets) { - editScript += getASTEditScriptsBreadthFirst(hunkActionSet, bugEndPosition, fixEndPosition); - } - return editScript; - } - - private String getASTEditScriptsBreadthFirst(HierarchicalActionSet hunkActionSet, int bugEndPosition, int fixEndPosition) { - String editScript = ""; - List actionSets = new ArrayList<>(); - actionSets.add(hunkActionSet); - while (actionSets.size() != 0) { - List subSets = new ArrayList<>(); - for (HierarchicalActionSet set : actionSets) { - int position = set.getAction().getPosition(); - String actionStr = set.getActionString(); - if (isOutofPosition(actionStr, position, bugEndPosition, fixEndPosition)) { - continue; - } - - subSets.addAll(set.getSubActions()); - int index = actionStr.indexOf("@@"); - String singleEdit = actionStr.substring(0, index).replace(" ", ""); - - singleEdit = handleSimpleNameNode(singleEdit, actionStr, index); - - editScript += singleEdit + " "; - } - actionSets.clear(); - actionSets.addAll(subSets); - } - return editScript; - } - - private boolean isOutofPosition(String actionStr, int actionPosition, int bugEndPosition, int fixEndPosition) { - if (actionStr.startsWith("INS")) { - if (actionPosition > fixEndPosition) { - return true; - } - } else if (!actionStr.startsWith("MOV") && actionPosition > bugEndPosition) { - return true; - } - return false; - } - - protected String getASTEditScriptsDeepFirst(List hunkActionSets, int bugEndPosition, int fixEndPosition) { - StringBuilder editScript = new StringBuilder(); - - for (HierarchicalActionSet hunkActionSet : hunkActionSets) { - editScript.append(getASTEditScriptsDeepFirst2(hunkActionSet, bugEndPosition, fixEndPosition)); - } - return editScript.toString(); - } - - private String getASTEditScriptsDeepFirst(HierarchicalActionSet actionSet, int bugEndPosition, int fixEndPosition) { - String editScripts = ""; - String actionStr = actionSet.getActionString(); - int index = actionStr.indexOf("@@"); - String singleEdit = actionStr.substring(0, index).replace(" ", ""); - - singleEdit = handleSimpleNameNode(singleEdit, actionStr, index); - - editScripts += singleEdit + " "; - - for (HierarchicalActionSet subActionSet : actionSet.getSubActions()) { - int position = subActionSet.getAction().getPosition(); - actionStr = subActionSet.getActionString(); - if (isOutofPosition(actionStr, position, bugEndPosition, fixEndPosition)) { - continue; - } - editScripts += getASTEditScriptsDeepFirst(subActionSet, bugEndPosition, fixEndPosition); - } - - return editScripts; - } - - private String getASTEditScriptsDeepFirst2(HierarchicalActionSet actionSet, int bugEndPosition, int fixEndPosition) { - StringBuilder editScripts = new StringBuilder(); - String actionStr = actionSet.getActionString(); - int index = actionStr.indexOf("@@"); - String singleEdit = actionStr.substring(0, index); - - if (singleEdit.endsWith("Statement")) { - singleEdit = singleEdit + " " + singleEdit.substring(4, singleEdit.indexOf("Statement")).toLowerCase(Locale.ENGLISH); - } else { - singleEdit = handleSimpleNameNode2(singleEdit, actionStr, index, actionSet); - } - editScripts.append(singleEdit).append(" "); - - for (HierarchicalActionSet subActionSet : actionSet.getSubActions()) { - int position = subActionSet.getAction().getPosition(); - actionStr = subActionSet.getActionString(); - if (isOutofPosition(actionStr, position, bugEndPosition, fixEndPosition)) { - continue; - } - editScripts.append(getASTEditScriptsDeepFirst2(subActionSet, bugEndPosition, fixEndPosition)); - } - - return editScripts.toString(); - } - - private String handleSimpleNameNode2(String singleEdit, String actionStr, int index, HierarchicalActionSet actionSet) { - if (singleEdit.endsWith("SimpleName")) { - actionStr = actionStr.substring(index + 2); - if (actionStr.startsWith("MethodName")) { - singleEdit = singleEdit.replace("SimpleName", "MethodName"); - String methodName = actionStr.substring(actionStr.indexOf("MethodName:") + 11); - int index1 = methodName.indexOf(":"); - int index2 = methodName.indexOf(" "); - index = (index1 < 0 || index1 > index2) ? index2 : index1; - methodName = methodName.substring(0, index); - singleEdit += " " + methodName; - } else if (actionStr.startsWith("ClassName")) { - singleEdit = singleEdit.replace("SimpleName", "ClassName"); - String className = actionStr.substring(actionStr.indexOf("ClassName:") + 10); - int index1 = className.indexOf(" "); - index = index1 < 0 ? className.length() : index1; - className = className.substring(0, index); - singleEdit += " " + className; - } else { - if (actionStr.startsWith("Name")) { - char c = actionStr.charAt(5); - if (Character.isUpperCase(c)) { - singleEdit = singleEdit.replace("SimpleName", "Name"); - String name = actionStr.substring(actionStr.indexOf("Name:") + 5); - int index1 = name.indexOf(" "); - index = index1 < 0 ? name.length() : index1; - name = name.substring(0, index); - singleEdit += " " + name; - } else { - singleEdit = singleEdit.replace("SimpleName", "Variable"); - int index1 = actionStr.indexOf(" "); - index = index1 < 0 ? actionStr.length() : index1; - String var = actionStr.substring(0, index); - var = new SimplifyTree().canonicalVariableName(var, actionSet.getAction().getNode()); - singleEdit += " " + var.replaceAll(" ", ""); - } - } else { - singleEdit = singleEdit.replace("SimpleName", "Variable"); - String var = actionStr.substring(0, (actionStr.indexOf(" ") < 0 ? actionStr.length() : actionStr.indexOf(" "))); - var = new SimplifyTree().canonicalVariableName(var, actionSet.getAction().getNode()); - singleEdit += " " + var.replaceAll(" ", ""); - } - } - } else { - if (actionSet.getSubActions() != null && actionSet.getSubActions().size() > 0) { - singleEdit += " " + actionSet.getAstNodeType()+ "exp"; - } else { - if (singleEdit.endsWith("CharacterLiteral")) { - singleEdit += " charLiteral"; - } else if (singleEdit.endsWith("NumberLiteral")) { - singleEdit += " numLiteral"; - } else if (singleEdit.endsWith("StringLiteral")) { - singleEdit += " strLiteral"; - } else if (singleEdit.endsWith("BooleanLiteral") || singleEdit.endsWith("NullLiteral") || singleEdit.endsWith("Operator") || - singleEdit.endsWith("ThisExpression") || singleEdit.endsWith("TypeLiteral") || singleEdit.endsWith("Instanceof") || - singleEdit.endsWith("New") || singleEdit.endsWith("WildcardType") || singleEdit.endsWith("SimpleType") || - singleEdit.endsWith("QualifiedType") || singleEdit.endsWith("PrimitiveType") || singleEdit.endsWith("NameQualifiedType")) { - singleEdit += " " + actionSet.getNode().getLabel(); - } else if (singleEdit.endsWith("SuperConstructorInvocation")) { - singleEdit += " super"; - } else if (singleEdit.endsWith("ConstructorInvocation")) { - singleEdit += " this"; - } else if (singleEdit.endsWith("SimpleName")) { - actionStr = actionStr.substring(index + 2); - if (actionStr.startsWith("MethodName")) { - singleEdit = singleEdit.replace("SimpleName", "MethodName"); - String methodName = actionStr.substring(actionStr.indexOf("MethodName:") + 11); - int index1 = methodName.indexOf(":"); - int index2 = methodName.indexOf(" "); - index = (index1 < 0 || index1 > index2) ? index2 : index1; - methodName = methodName.substring(0, index); - singleEdit += " " + methodName; - } else if (actionStr.startsWith("ClassName")) { - singleEdit = singleEdit.replace("SimpleName", "ClassName"); - String className = actionStr.substring(actionStr.indexOf("ClassName:") + 10); - int index1 = className.indexOf(" "); - index = index1 < 0 ? className.length() : index1; - className = className.substring(0, index); - singleEdit += " " + className; - } else { - if (actionStr.startsWith("Name")) { - char c = actionStr.charAt(5); - if (Character.isUpperCase(c)) { - singleEdit = singleEdit.replace("SimpleName", "Name"); - String name = actionStr.substring(actionStr.indexOf("Name:") + 5); - int index1 = name.indexOf(" "); - index = index1 < 0 ? name.length() : index1; - name = name.substring(0, index); - singleEdit += " " + name; - } else { - singleEdit = singleEdit.replace("SimpleName", "Variable"); - int index1 = actionStr.indexOf(" "); - index = index1 < 0 ? actionStr.length() : index1; - String var = actionStr.substring(0, index); - var = new SimplifyTree().canonicalVariableName(var, actionSet.getAction().getNode()); - singleEdit += " " + var.replaceAll(" ", ""); - } - } else { - singleEdit = singleEdit.replace("SimpleName", "Variable"); - String var = actionStr.substring(0, (actionStr.indexOf(" ") < 0 ? actionStr.length() : actionStr.indexOf(" "))); - var = new SimplifyTree().canonicalVariableName(var, actionSet.getAction().getNode()); - singleEdit += " " + var.replaceAll(" ", ""); - } - } - } else { - ITree nodeTree = actionSet.getNode(); - if (nodeTree.getChildren().size() > 0) { - singleEdit += " " + actionSet.getAstNodeType()+ "exp"; - } else { - singleEdit += " " + nodeTree.getLabel().replaceAll(" ", ""); - } - } - } - } - return singleEdit; - } - - protected String getAstEditScripts(List actionSets, int bugEndLine, int fixEndLine) { - String editScripts = ""; - for (HierarchicalActionSet actionSet : actionSets) { - editScripts += getActionString(actionSet, bugEndLine, fixEndLine, ""); - } - return editScripts; - } - - private String getActionString(HierarchicalActionSet actionSet, int bugEndPosition, int fixEndPosition, String hierarchicalLabel) { - String editScripts = ""; - - String actionStr = actionSet.getActionString(); - int index = actionStr.indexOf("@@"); - String singleEdit = actionStr.substring(0, index); - - singleEdit = handleSimpleNameNode(singleEdit, actionStr, index); - - editScripts += hierarchicalLabel + singleEdit + "\n"; - - for (HierarchicalActionSet subActionSet : actionSet.getSubActions()) { - int position = subActionSet.getAction().getPosition(); - actionStr = subActionSet.getActionString(); - if (isOutofPosition(actionStr, position, bugEndPosition, fixEndPosition)) { - continue; - } - editScripts += getActionString(subActionSet, bugEndPosition, fixEndPosition, hierarchicalLabel + "---"); - } - - return editScripts; - } - - protected void clearITree(HierarchicalActionSet actionSet) { - actionSet.getAction().setNode(null); - for (HierarchicalActionSet subActionSet : actionSet.getSubActions()) { - clearITree(subActionSet); - } - } - @Override public String getAstEditScripts() { return astEditScripts; @@ -472,10 +31,10 @@ public abstract class Parser implements ParserInterface { return patchesSourceCode; } - @Override - public String getBuggyTrees() { - return buggyTrees; - } +// @Override +// public String getBuggyTrees() { +// return buggyTrees; +// } @Override public String getSizes() { @@ -487,13 +46,13 @@ public abstract class Parser implements ParserInterface { return tokensOfSourceCode; } - @Override - public String getOriginalTree() { - return originalTree; - } - - @Override - public String getActionSets() { - return actionSets; - } +// @Override +// public String getOriginalTree() { +// return originalTree; +// } +// +// @Override +// public String getActionSets() { +// return actionSets; +// } } diff --git a/src/main/java/edu/lu/uni/serval/FixPatternParser/ParserInterface.java b/src/main/java/edu/lu/uni/serval/FixPatternParser/ParserInterface.java index 2245087..2a4c517 100644 --- a/src/main/java/edu/lu/uni/serval/FixPatternParser/ParserInterface.java +++ b/src/main/java/edu/lu/uni/serval/FixPatternParser/ParserInterface.java @@ -1,23 +1,21 @@ package edu.lu.uni.serval.FixPatternParser; -import java.io.File; - public interface ParserInterface { - public void parseFixPatterns(File prevFile, File revFile, File diffEntryFile); +// public void parseFixPatterns(File prevFile, File revFile, File diffEntryFile); public String getAstEditScripts(); public String getPatchesSourceCode(); - public String getBuggyTrees(); +// public String getBuggyTrees(); public String getSizes(); public String getTokensOfSourceCode(); - public String getOriginalTree(); +// public String getOriginalTree(); - public String getActionSets(); +// public String getActionSets(); } diff --git a/src/main/java/edu/lu/uni/serval/FixPatternParser/Tokenizer.java b/src/main/java/edu/lu/uni/serval/FixPatternParser/Tokenizer.java deleted file mode 100644 index b9a9030..0000000 --- a/src/main/java/edu/lu/uni/serval/FixPatternParser/Tokenizer.java +++ /dev/null @@ -1,75 +0,0 @@ -package edu.lu.uni.serval.FixPatternParser; - -import java.util.List; - -import edu.lu.uni.serval.gumtree.regroup.SimpleTree; - -public class Tokenizer { - - public static String getTokensDeepFirst(SimpleTree simpleTree) { - String tokens = ""; - List children = simpleTree.getChildren(); - String astNodeType = simpleTree.getNodeType(); - - if (children.isEmpty()) { // BreakStatement, ContinueStatement, ReturnStatement, TryStatement - if (astNodeType.endsWith("Statement")) { - String label = astNodeType; - label = label.substring(0, label.lastIndexOf("S")).toLowerCase(); - tokens += astNodeType + " " + label + " "; - } else if ("SuperConstructorInvocation".equals(astNodeType)) { - tokens += astNodeType + " super "; - } else if ("ConstructorInvocation".equals(astNodeType)) { - tokens += astNodeType + " this "; - } else if ("StringLiteral".equals(astNodeType)) { - tokens += astNodeType + " stringLiteral "; - } else if ("CharacterLiteral".equals(astNodeType)) { - tokens += astNodeType + " charLiteral "; - } else if ("ArrayInitializer".equals(astNodeType)) { - tokens += astNodeType + " arrayInitializer "; - } else if ("LambdaExpression".equals(astNodeType)) { - tokens += astNodeType + " lambda "; - } else if ("NumberLiteral".equals(astNodeType)) { - tokens += astNodeType + " numberLiteral "; - } else { - tokens += astNodeType + " " + simpleTree.getLabel() + " "; - } - } else { - if ("AssertStatement".equals(astNodeType) || "DoStatement".equals(astNodeType) - || "ForStatement".equals(astNodeType) || "IfStatement".equals(astNodeType) - || "ReturnStatement".equals(astNodeType) || "SwitchStatement".equals(astNodeType) - || "SynchronizedStatement".equals(astNodeType) || "ThrowStatement".equals(astNodeType) - || "TryStatement".equals(astNodeType) || "WhileStatement".equals(astNodeType)) { - String label = astNodeType; - label = label.substring(0, label.lastIndexOf("S")).toLowerCase(); - tokens += astNodeType + " " + label + " "; - } else if ("EnhancedForStatement".equals(astNodeType)) { - tokens += astNodeType + " " + "for "; - } else if ("CatchClause".equals(astNodeType)) { - tokens += astNodeType + " " + "catch "; - } else if ("SwitchCase".equals(astNodeType)) { - tokens += astNodeType + " case "; - } else if ("SuperConstructorInvocation".equals(astNodeType)) { - tokens += astNodeType + " super "; - } else if ("ConstructorInvocation".equals(astNodeType)) { - tokens += astNodeType + " this "; - } else if ("FinallyBody".equals(astNodeType)) { - tokens += astNodeType + " finally "; - } else if ("LabeledStatement".equals(astNodeType)) { - tokens += "LabeledStatement " + simpleTree.getLabel(); - } else if ("SuperMethodInvocation".equals(astNodeType)) { - tokens += astNodeType + " super "; - } else if ("MethodName".equals(astNodeType)) { - tokens += "MethodName " + simpleTree.getLabel() + " "; - } - - if ("ArrayInitializer".equals(astNodeType)) { - tokens += astNodeType + " arrayInitializer "; - } else { - for (SimpleTree child : children) { - tokens += getTokensDeepFirst(child); - } - } - } - return tokens; - } -} diff --git a/src/main/java/edu/lu/uni/serval/FixPatternParser/patch/CommitPatchHunkParser.java b/src/main/java/edu/lu/uni/serval/FixPatternParser/patch/CommitPatchHunkParser.java deleted file mode 100644 index a100e28..0000000 --- a/src/main/java/edu/lu/uni/serval/FixPatternParser/patch/CommitPatchHunkParser.java +++ /dev/null @@ -1,113 +0,0 @@ -package edu.lu.uni.serval.FixPatternParser.patch; - -import java.io.File; -import java.util.ArrayList; -import java.util.List; - -import edu.lu.uni.serval.FixPatternParser.Tokenizer; -import edu.lu.uni.serval.config.Configuration; -import edu.lu.uni.serval.diffentry.DiffEntryHunk; -import edu.lu.uni.serval.diffentry.DiffEntryReader; -import edu.lu.uni.serval.gumtree.regroup.HierarchicalActionSet; -import edu.lu.uni.serval.gumtree.regroup.HunkActionFilter; -import edu.lu.uni.serval.gumtree.regroup.HunkFixPattern; -import edu.lu.uni.serval.gumtree.regroup.SimpleTree; -import edu.lu.uni.serval.gumtree.regroup.SimplifyTree; - -/** - * Parse fix patterns with GumTree. - * - * Multiple statements bugs. - * - * @author kui.liu - * - */ -public class CommitPatchHunkParser extends CommitPatchParser { - - - @Override - public void parseFixPatterns(File prevFile, File revFile, File diffEntryFile) { - - // GumTree results - List actionSets = parseChangedSourceCodeWithGumTree(prevFile, revFile); - - if (actionSets.size() > 0) { - // DiffEntry size: filter out big hunks. - List diffentryHunks = new DiffEntryReader().readHunks(diffEntryFile); - //Filter out the modify actions, which are not in the DiffEntry hunks. - HunkActionFilter hunkFilter = new HunkActionFilter(); - List allHunkFixPatterns = hunkFilter.filterActionsByDiffEntryHunk2(diffentryHunks, actionSets, revFile, prevFile); - - for (HunkFixPattern hunkFixPattern : allHunkFixPatterns) { - // Range of buggy source code - int startLine = 0; - int endLine = 0; - // Range of fixing source code - int startLine2 = 0; - int endLine2 = 0; - /* - * Convert the ITree of buggy code to a simple tree. - * It will be used to compute the similarity. - */ - List hunkActionSets = hunkFixPattern.getHunkActionSets(); - SimpleTree simpleTree = new SimpleTree(); - simpleTree.setLabel("Block"); - simpleTree.setNodeType("Block"); - List children = new ArrayList<>(); - String astEditScripts = ""; - for (HierarchicalActionSet hunkActionSet : hunkActionSets) { - SimplifyTree abstractIdentifier = new SimplifyTree(); - abstractIdentifier.abstractTree(hunkActionSet); - SimpleTree simpleT = hunkActionSet.getSimpleTree(); - if (simpleT == null) { // Failed to get the simple tree for INS actions. - continue; - } - children.add(simpleT); - - /** - * Select edit scripts for deep learning. - * Edit scripts will be used to mine common fix patterns. - */ - // 1. First level: AST node type. - astEditScripts += getASTEditScriptsBreadthFirst(hunkActionSet); - // 2. source code: raw tokens - // 3. abstract identifiers: - // 4. semi-source code: - - if (startLine == 0) { - startLine = hunkActionSet.getBugStartLineNum(); - endLine = hunkActionSet.getBugEndLineNum(); - startLine2 = hunkActionSet.getFixStartLineNum(); - endLine2 = hunkActionSet.getFixEndLineNum(); - } else { - if (startLine > hunkActionSet.getBugStartLineNum()) startLine = hunkActionSet.getBugStartLineNum(); - if (startLine2 > hunkActionSet.getFixStartLineNum()) startLine2 = hunkActionSet.getFixStartLineNum(); - if (endLine < hunkActionSet.getBugEndLineNum()) endLine = hunkActionSet.getBugEndLineNum(); - if (endLine2 < hunkActionSet.getFixEndLineNum()) endLine2 = hunkActionSet.getFixEndLineNum(); - } - } - if (children.size() == 0) continue; - if (endLine - startLine >= Configuration.HUNK_SIZE - 2 || endLine2 - startLine2 >= Configuration.HUNK_SIZE - 2 ) continue; - - simpleTree.setChildren(children); - simpleTree.setParent(null); - - // Source Code of patches. - String patchSourceCode = getPatchSourceCode(hunkFixPattern.getHunk(), startLine, endLine, startLine2, endLine2); - if ("".equals(patchSourceCode)) continue; - - this.patchesSourceCode += "PATCH###\n" + patchSourceCode + "\n"; - int size = astEditScripts.split(" ").length; - this.sizes += size + "\n"; - this.astEditScripts += astEditScripts + "\n"; - -// this.buggyTrees += Configuration.BUGGY_TREE_TOKEN + "\n" + simpleTree.toString() + "\n"; - this.tokensOfSourceCode += Tokenizer.getTokensDeepFirst(simpleTree).trim() + "\n"; -// this.actionSets += Configuration.BUGGY_TREE_TOKEN + "\n" + readActionSet(actionSet, "") + "\n"; -// this.originalTree += Configuration.BUGGY_TREE_TOKEN + "\n" + actionSet.getOriginalTree().toString() + "\n"; - - } - } - } - -} diff --git a/src/main/java/edu/lu/uni/serval/FixPatternParser/patch/CommitPatchParser.java b/src/main/java/edu/lu/uni/serval/FixPatternParser/patch/CommitPatchParser.java deleted file mode 100644 index b1edcc3..0000000 --- a/src/main/java/edu/lu/uni/serval/FixPatternParser/patch/CommitPatchParser.java +++ /dev/null @@ -1,105 +0,0 @@ -package edu.lu.uni.serval.FixPatternParser.patch; - -import java.io.BufferedReader; -import java.io.File; -import java.io.IOException; -import java.io.StringReader; -import java.util.List; - -import edu.lu.uni.serval.FixPatternParser.Parser; -import edu.lu.uni.serval.diffentry.DiffEntryHunk; - -/** - * Parse fix patterns with GumTree. - * - * @author kui.liu - * - */ -public class CommitPatchParser extends Parser{ - - @Override - public void parseFixPatterns(File prevFile, File revFile, File diffEntryFile) { - } - - protected DiffEntryHunk matchHunk(int startLine, int endLine, int startLine2, int endLine2, String actionStr, List hunks) { - for (DiffEntryHunk hunk : hunks) { - int bugStartLine = hunk.getBugLineStartNum(); - int bugRange = hunk.getBugRange(); - int fixStartLine = hunk.getFixLineStartNum(); - int fixRange = hunk.getFixRange(); - - if (actionStr.startsWith("INS")) { - if (fixStartLine + fixRange < startLine2) { - continue; - } - if (endLine2 < fixStartLine ) { - return null; - } - return hunk; - } else { - if (bugStartLine + bugRange < startLine) { - continue; - } - if (endLine < bugStartLine ) { - return null; - } - return hunk; - } - } - return null; - } - - protected String getPatchSourceCode(DiffEntryHunk hunk, int startLineNum, int endLineNum, int startLineNum2, int endLineNum2) { - String sourceCode = hunk.getHunk(); - int bugStartLine = hunk.getBugLineStartNum(); - int fixStartLine = hunk.getFixLineStartNum(); - String buggyStatements = ""; - String fixedStatements = ""; - BufferedReader reader = null; - try { - reader = new BufferedReader(new StringReader(sourceCode)); - String line = null; - int bugLines = 0; - int fixLines = 0; - int contextLines = 0; // counter of non-buggy code line. - while ((line = reader.readLine()) != null) { - int bugLineIndex = bugLines + contextLines; - int fixLineIndex = fixLines + contextLines; - if (line.startsWith("-")) { - if (bugStartLine + bugLineIndex >= startLineNum && bugStartLine + bugLineIndex <= endLineNum) { - buggyStatements += line + "\n"; - } - bugLines ++; - } else if (line.startsWith("+")) { - if (fixStartLine + fixLineIndex >= startLineNum2 && fixStartLine + fixLineIndex <= endLineNum2) { - fixedStatements += line + "\n"; - } - fixLines ++; - } else { - contextLines ++; - } - - if (bugStartLine + bugLineIndex > endLineNum && fixStartLine + fixLineIndex > endLineNum2) { - break; - } - } - } catch (IOException e) { - e.printStackTrace(); - } finally { - try { - if (reader != null) { - reader.close(); - reader = null; - } - } catch (IOException e) { - e.printStackTrace(); - } - } - return buggyStatements + fixedStatements; - } - - @Override - public void parseFixPatterns(File prevFile, File revFile, File diffEntryFile, String project) { - - } -} diff --git a/src/main/java/edu/lu/uni/serval/FixPatternParser/patch/CommitPatchSingleStatementParser.java b/src/main/java/edu/lu/uni/serval/FixPatternParser/patch/CommitPatchSingleStatementParser.java deleted file mode 100644 index 63e31b7..0000000 --- a/src/main/java/edu/lu/uni/serval/FixPatternParser/patch/CommitPatchSingleStatementParser.java +++ /dev/null @@ -1,158 +0,0 @@ -package edu.lu.uni.serval.FixPatternParser.patch; - -import java.io.File; -import java.util.List; - -import org.eclipse.jdt.core.dom.CompilationUnit; - -import com.github.gumtreediff.actions.model.Move; -import com.github.gumtreediff.actions.model.Update; -import com.github.gumtreediff.tree.ITree; - -import edu.lu.uni.serval.FixPattern.utils.Checker; -import edu.lu.uni.serval.FixPatternParser.CUCreator; -import edu.lu.uni.serval.FixPatternParser.Tokenizer; -import edu.lu.uni.serval.config.Configuration; -import edu.lu.uni.serval.diffentry.DiffEntryHunk; -import edu.lu.uni.serval.diffentry.DiffEntryReader; -import edu.lu.uni.serval.gumtree.regroup.HierarchicalActionSet; -import edu.lu.uni.serval.gumtree.regroup.SimpleTree; -import edu.lu.uni.serval.gumtree.regroup.SimplifyTree; - -/** - * Parse fix patterns with GumTree. - * - * Single Statement bugs. - * - * @author kui.liu - * - */ -public class CommitPatchSingleStatementParser extends CommitPatchParser { - - @Override - public void parseFixPatterns(File prevFile, File revFile, File diffEntryFile) { - // GumTree results - List actionSets = parseChangedSourceCodeWithGumTree(prevFile, revFile); - - if (actionSets.size() > 0) { - // DiffEntry Hunks: filter out big hunks. - List diffentryHunks = new DiffEntryReader().readHunks(diffEntryFile); - CUCreator cuCreator = new CUCreator(); - CompilationUnit prevUnit = cuCreator.createCompilationUnit(prevFile); - CompilationUnit revUnit = cuCreator.createCompilationUnit(revFile); - if (prevUnit == null || revUnit == null) { - return; - } - for (HierarchicalActionSet actionSet : actionSets) { - // position of buggy statements - int startPosition = 0; - int endPosition = 0; - // position of fixed statements - int startPosition2 = 0; - int endPosition2 = 0; - - String actionStr = actionSet.getActionString(); - String astNodeType = actionSet.getAstNodeType(); - if (actionStr.startsWith("INS")) { - startPosition2 = actionSet.getStartPosition(); - endPosition2 = startPosition2 + actionSet.getLength(); - List firstAndLastMov = getFirstAndLastMoveAction(actionSet); - if (firstAndLastMov != null) { - startPosition = firstAndLastMov.get(0).getNode().getPos(); - ITree lastTree = firstAndLastMov.get(1).getNode(); - endPosition = lastTree.getPos() + lastTree.getLength(); - } else { // Ignore the pure insert actions without any move actions. - continue; - } - } else if (actionStr.startsWith("UPD")) { - startPosition = actionSet.getStartPosition(); - endPosition = startPosition + actionSet.getLength(); - Update update = (Update) actionSet.getAction(); - ITree newNode = update.getNewNode(); - startPosition2 = newNode.getPos(); - endPosition2 = startPosition2 + newNode.getLength(); - - if (Checker.containsBodyBlock(astNodeType)) { - List children = update.getNode().getChildren(); - endPosition = getEndPosition(children); - List newChildren = newNode.getChildren(); - endPosition2 = getEndPosition(newChildren); - - if (endPosition == 0) { - endPosition = startPosition + actionSet.getLength(); - } - if (endPosition2 == 0) { - endPosition2 = startPosition2 + newNode.getLength(); - } - } - } else {// DEL actions and MOV actions: we don't need these actions, as for now. - continue; - } - if (startPosition == 0 || startPosition2 == 0) { - continue; - } - - // Get line numbers. - int startLine = prevUnit.getLineNumber(startPosition); - int endLine = prevUnit.getLineNumber(endPosition); - int startLine2 = revUnit.getLineNumber(startPosition2); - int endLine2 = revUnit.getLineNumber(endPosition2); - if (endLine - startLine >= Configuration.HUNK_SIZE - 2 || endLine2 - startLine2 >= Configuration.HUNK_SIZE - 2) - continue; - // Filter out the modify actions, which are not in the DiffEntry hunks. - DiffEntryHunk hunk = matchHunk(startLine, endLine, startLine2, endLine2, actionStr, diffentryHunks); - if (hunk == null) { - continue; - } - - /* - * Convert the ITree of buggy code to a simple tree. It will be - * used to compute the similarity. - */ - SimplifyTree abstractIdentifier = new SimplifyTree(); - abstractIdentifier.abstractTree(actionSet); - SimpleTree simpleTree = actionSet.getSimpleTree(); - if (simpleTree == null) { // Failed to get the simple tree for INS actions. - continue; - } - - /** - * Select edit scripts for deep learning. Edit scripts will be - * used to mine common fix patterns. - */ - // 1. First level: AST node type. - String astEditScripts = getASTEditScriptsBreadthFirst(actionSet); - int size = astEditScripts.split(" ").length; - if (size < 2) { - // System.out.println(actionSet); - continue; - } - - // Source Code of patches. - String patchSourceCode = getPatchSourceCode(hunk, startLine, endLine, startLine2, endLine2); - if ("".equals(patchSourceCode)) - continue; - - this.patchesSourceCode += Configuration.PATCH_SIGNAL + "\n" + patchSourceCode + "\n"; - this.sizes += size + "\n"; - this.astEditScripts += astEditScripts + "\n"; -// // 2. source code: raw tokens -// String rawTokenEditScripts = getRawTokenEditScripts(actionSet); -// // 3. abstract identifiers: -// String abstractIdentifiersEditScripts = getAbstractIdentifiersEditScripts(actionSet); -// // 4. semi-source code: -// String semiSourceCodeEditScripts = getSemiSourceCodeEditScripts(actionSet); - - // this.buggyTrees += Configuration.BUGGY_TREE_TOKEN + "\n" + - // simpleTree.toString() + "\n"; - this.tokensOfSourceCode += Tokenizer.getTokensDeepFirst(simpleTree).trim() + "\n"; - // this.actionSets += Configuration.BUGGY_TREE_TOKEN + "\n" + - // readActionSet(actionSet, "") + "\n"; - // this.originalTree += Configuration.BUGGY_TREE_TOKEN + "\n" + - // actionSet.getOriginalTree().toString() + "\n"; - } - actionSets.clear(); - } - } - -} diff --git a/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/CSVUtils.java b/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/CSVUtils.java deleted file mode 100644 index 1c5981b..0000000 --- a/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/CSVUtils.java +++ /dev/null @@ -1,62 +0,0 @@ -package edu.lu.uni.serval.FixPatternParser.violations; - -import java.io.IOException; -import java.io.Writer; -import java.util.List; - -/** - * Created by anilkoyuncu on 19/03/2018. - */ -public class CSVUtils { - - private static final char DEFAULT_SEPARATOR = ','; - - public static void writeLine(Writer w, List values) throws IOException { - writeLine(w, values, DEFAULT_SEPARATOR, ' '); - } - - public static void writeLine(Writer w, List values, char separators) throws IOException { - writeLine(w, values, separators, ' '); - } - - //https://tools.ietf.org/html/rfc4180 - private static String followCVSformat(String value) { - - String result = value; - if (result.contains("\"")) { - result = result.replace("\"", "\"\""); - } - return result; - - } - - public static void writeLine(Writer w, List values, char separators, char customQuote) throws IOException { - - boolean first = true; - - //default customQuote is empty - - if (separators == ' ') { - separators = DEFAULT_SEPARATOR; - } - - StringBuilder sb = new StringBuilder(); - for (String value : values) { - if (!first) { - sb.append(separators); - } - if (customQuote == ' ') { - sb.append(followCVSformat(value)); - } else { - sb.append(customQuote).append(followCVSformat(value)).append(customQuote); - } - - first = false; - } - sb.append("\n"); - w.append(sb.toString()); - - - } - -} diff --git a/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/Consumer.java b/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/Consumer.java deleted file mode 100644 index 9cda090..0000000 --- a/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/Consumer.java +++ /dev/null @@ -1,226 +0,0 @@ -package edu.lu.uni.serval.FixPatternParser.violations; - -import com.github.gumtreediff.actions.ActionGenerator; -import com.github.gumtreediff.actions.model.Action; -import com.github.gumtreediff.matchers.Matcher; -import com.github.gumtreediff.matchers.Matchers; -import com.github.gumtreediff.tree.ITree; -import com.github.gumtreediff.tree.Tree; -import com.rabbitmq.client.*; -import edu.lu.uni.serval.FixPattern.utils.ASTNodeMap; -import edu.lu.uni.serval.gumtree.regroup.HierarchicalActionSet; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import redis.clients.jedis.Jedis; -import redis.clients.jedis.JedisPool; -import redis.clients.jedis.JedisPoolConfig; - -import java.io.*; -import java.util.List; -import java.util.Map; -import java.util.Objects; -import java.util.concurrent.TimeoutException; -import java.util.stream.Collectors; - -/** - * Created by anilkoyuncu on 03/04/2018. - */ -public class Consumer { - - private static Logger log = LoggerFactory.getLogger(Consumer.class); - private static String inputPath = "/Users/anilkoyuncu/bugStudy/dataset/GumTreeOutput2"; - - public static void main(String[] args) { - - ConnectionFactory factory = new ConnectionFactory(); - factory.setHost("10.240.5.10"); -// factory.setVirtualHost("treeCompare"); - factory.setPort(5672); - factory.setUsername("anil"); - factory.setPassword("changeme2018"); - factory.setConnectionTimeout(1000); - Connection connection = null; - Channel channel = null; - try { - connection = factory.newConnection(); - - channel = connection.createChannel(); - channel.queueDeclare("tree_queue", false, false, false, null); - - - boolean autoAck = false; - Channel finalChannel = channel; - channel.basicConsume("tree_queue", autoAck,"myConsumerTag", - new DefaultConsumer(finalChannel) { - @Override - public void handleDelivery( - String consumerTag, - Envelope envelope, - AMQP.BasicProperties properties, - byte[] body) throws IOException { - - String message = new String(body, "UTF-8"); - String[] split = message.split(","); - String key = split[0]; - String firstV = split[1]; - String secondV = split[2]; - try{ - calculateSimi(firstV,secondV,key); - }catch (Exception e){ - finalChannel.basicNack(envelope.getDeliveryTag(),false,false); - } - finalChannel.basicAck(envelope.getDeliveryTag(),false); - - // process the message - } - }); - -// channel.basicConsume("tree_queue", true, consumer); - - } catch (IOException e) { - e.printStackTrace(); - } catch (TimeoutException e) { - e.printStackTrace(); - } - } - - public static void calculateSimi(String firstVal,String secondVal, String key){ - - String[] split = key.split("_"); - - - String i = split[1]; - String j = split[2]; - - String[] firstValueSplit = firstVal.split("GumTreeOutput2"); - String[] secondValueSplit = secondVal.split("GumTreeOutput2"); - - String firstValue; - if (firstValueSplit.length == 1) { - firstValue = inputPath + firstValueSplit[0]; - } else { - firstValue = inputPath + firstValueSplit[1]; - } - - String secondValue; - if (secondValueSplit.length == 1) { - secondValue = inputPath + secondValueSplit[0]; - } else { - secondValue = inputPath + secondValueSplit[1]; - } - - ITree oldTree = getSimpliedTree(firstValue); - - ITree newTree = getSimpliedTree(secondValue); - - Matcher m = Matchers.getInstance().getMatcher(oldTree, newTree); - m.match(); - - - ActionGenerator ag = new ActionGenerator(oldTree, newTree, m.getMappings()); - ag.generate(); - List actions = ag.getActions(); - - double chawatheSimilarity1 = m.chawatheSimilarity(oldTree, newTree); - String chawatheSimilarity = String.format("%1.2f", chawatheSimilarity1); - double diceSimilarity1 = m.diceSimilarity(oldTree, newTree); - String diceSimilarity = String.format("%1.2f", diceSimilarity1); - double jaccardSimilarity1 = m.jaccardSimilarity(oldTree, newTree); - String jaccardSimilarity = String.format("%1.2f", jaccardSimilarity1); - - String editDistance = String.valueOf(actions.size()); - - String result = firstVal + "," + secondVal + "," + chawatheSimilarity + "," + diceSimilarity + "," + jaccardSimilarity + "," + editDistance; - - - if (((Double) chawatheSimilarity1).equals(1.0) || ((Double) diceSimilarity1).equals(1.0) - || ((Double) jaccardSimilarity1).equals(1.0) || actions.size() == 0) { - String matchKey = "match_" + (String.valueOf(i)) + "_" + String.valueOf(j); - log.info(matchKey); -// JedisPool jedisPool = new JedisPool(new JedisPoolConfig(), "127.0.0.1", Integer.valueOf(port), 20000000); -// try (Jedis outer = jedisPool.getResource()) { -// outer.select(1); -// outer.set(matchKey, result); -// } - } - - -// try (Jedis jedis = pool.getResource()) { -// jedis.del("pair_"+ (String.valueOf(i)) + "_" + String.valueOf(j)); -// } - - } - - public static ITree getSimpliedTree(String fn) { - HierarchicalActionSet actionSet = null; - try { - FileInputStream fi = new FileInputStream(new File(fn)); - ObjectInputStream oi = new ObjectInputStream(fi); - actionSet = (HierarchicalActionSet) oi.readObject(); - oi.close(); - fi.close(); - - - } catch (FileNotFoundException e) { - log.error("File not found"); - e.printStackTrace(); - } catch (IOException e) { - log.error("Error initializing stream"); - e.printStackTrace(); - } catch (ClassNotFoundException e) { - // TODO Auto-generated catch block - e.printStackTrace(); - } - - ITree parent = null; - ITree children =null; - ITree tree = getASTTree(actionSet, parent, children); - tree.setParent(null); - - return tree; - - } - - public static List getKeysByValue(Map map, E value) { - return map.entrySet() - .stream() - .filter(entry -> Objects.equals(entry.getValue(), value)) - .map(Map.Entry::getKey) - .collect(Collectors.toList()); - } - - public static ITree getASTTree(HierarchicalActionSet actionSet, ITree parent, ITree children){ - - int newType = 0; - - String astNodeType = actionSet.getAstNodeType(); - List keysByValue = getKeysByValue(ASTNodeMap.map, astNodeType); - - if(keysByValue.size() != 1){ - log.error("Birden cok astnodemapmapping"); - } - newType = keysByValue.get(0); - if(actionSet.getParent() == null){ - //root - - parent = new Tree(newType,""); - }else{ - children = new Tree(newType,""); - parent.addChild(children); - } - List subActions = actionSet.getSubActions(); - if (subActions.size() != 0){ - for (HierarchicalActionSet subAction : subActions) { - - if(actionSet.getParent() == null){ - children = parent; - } - getASTTree(subAction,children,null); - - } - - - } - return parent; - } -} diff --git a/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/FieldViolation.java b/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/FieldViolation.java deleted file mode 100644 index a011853..0000000 --- a/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/FieldViolation.java +++ /dev/null @@ -1,121 +0,0 @@ -package edu.lu.uni.serval.FixPatternParser.violations; - -public enum FieldViolation { - UWF_FIELD_NOT_INITIALIZED_IN_CONSTRUCTOR, - ST_WRITE_TO_STATIC_FROM_INSTANCE_METHOD, - LI_LAZY_INIT_STATIC, - URF_UNREAD_FIELD, - MS_SHOULD_BE_FINAL, - URF_UNREAD_PUBLIC_OR_PROTECTED_FIELD, - UWF_UNWRITTEN_FIELD, - MS_PKGPROTECT, - SS_SHOULD_BE_STATIC, - NP_UNWRITTEN_FIELD, - UWF_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD, - SE_BAD_FIELD, - UUF_UNUSED_FIELD, - SE_BAD_FIELD_STORE, - MS_MUTABLE_ARRAY, - NP_UNWRITTEN_PUBLIC_OR_PROTECTED_FIELD, -} - -enum ClassViolation{ - SIC_INNER_SHOULD_BE_STATIC_ANON, //inner class. ClassInstanceCreation by overriding some methods. - SIC_INNER_SHOULD_BE_STATIC, - RI_REDUNDANT_INTERFACES, - SE_COMPARATOR_SHOULD_BE_SERIALIZABLE, - - SE_NO_SERIALVERSIONID, - CI_CONFUSED_INHERITANCE, - SE_INNER_CLASS, - - NM_CLASS_NOT_EXCEPTION, -} - -enum MethodViolation { - NM_METHOD_NAMING_CONVENTION, - UPM_UNCALLED_PRIVATE_METHOD, - DE_MIGHT_IGNORE, - - NM_CONFUSING, - CN_IMPLEMENTS_CLONE_BUT_NOT_CLONEABLE, - UC_USELESS_VOID_METHOD, -} - -enum StmtViolation { - DLS_DEAD_LOCAL_STORE, //Assignment statement. false positives may be high. - //This instruction assigns a value to a local variable, but the value is not read or used in any subsequent instruction. - - DM_BOXED_PRIMITIVE_FOR_PARSING, - - DM_CONVERT_CASE, - DM_DEFAULT_ENCODING, - IS2_INCONSISTENT_SYNC, - - NP_GUARANTEED_DEREF, - SIO_SUPERFLUOUS_INSTANCEOF, - NP_BOOLEAN_RETURN_NULL, - SF_SWITCH_FALLTHROUGH, - DP_DO_INSIDE_DO_PRIVILEGED, - DMI_INVOKING_TOSTRING_ON_ARRAY, - NP_NONNULL_PARAM_VIOLATION, - CN_IDIOM_NO_SUPER_CALL, - UL_UNRELEASED_LOCK_EXCEPTION_PATH, - RC_REF_COMPARISON_BAD_PRACTICE, - NP_ALWAYS_NULL, - NP_NULL_PARAM_DEREF, - GC_UNRELATED_TYPES, - DLS_DEAD_LOCAL_STORE_OF_NULL, - RpC_REPEATED_CONDITIONAL_TEST, - ODR_OPEN_DATABASE_RESOURCE_EXCEPTION_PATH, - DB_DUPLICATE_SWITCH_CLAUSES, - RV_RETURN_VALUE_IGNORED, - ES_COMPARING_PARAMETER_STRING_WITH_EQ, - RCN_REDUNDANT_NULLCHECK_OF_NULL_VALUE, - ICAST_IDIV_CAST_TO_DOUBLE, - BC_VACUOUS_INSTANCEOF, - EC_UNRELATED_TYPES, - ICAST_INTEGER_MULTIPLY_CAST_TO_LONG, - DM_STRING_TOSTRING, - DMI_HARDCODED_ABSOLUTE_FILENAME, - MS_MUTABLE_COLLECTION_PKGPROTECT, - NP_NULL_ON_SOME_PATH_EXCEPTION, - SQL_NONCONSTANT_STRING_PASSED_TO_EXECUTE, - EQ_COMPARETO_USE_OBJECT_EQUALS, - BX_UNBOXING_IMMEDIATELY_REBOXED, - HE_EQUALS_USE_HASHCODE, - DM_EXIT, - FE_FLOATING_POINT_EQUALITY, - RCN_REDUNDANT_NULLCHECK_OF_NONNULL_VALUE, - BC_UNCONFIRMED_CAST, - REC_CATCH_EXCEPTION, - BC_UNCONFIRMED_CAST_OF_RETURN_VALUE, - VA_FORMAT_STRING_USES_NEWLINE, - RV_RETURN_VALUE_IGNORED_BAD_PRACTICE, - EI_EXPOSE_REP2, - WMI_WRONG_MAP_ITERATOR, - EI_EXPOSE_REP, - NP_LOAD_OF_KNOWN_NULL_VALUE, - DM_NUMBER_CTOR, - SBSC_USE_STRINGBUFFER_CONCATENATION, - OS_OPEN_STREAM_EXCEPTION_PATH, - NP_NONNULL_RETURN_VIOLATION, - SF_SWITCH_NO_DEFAULT, - RV_RETURN_VALUE_IGNORED_NO_SIDE_EFFECT, - ODR_OPEN_DATABASE_RESOURCE, - PZLA_PREFER_ZERO_LENGTH_ARRAYS, - NP_NULL_ON_SOME_PATH_FROM_RETURN_VALUE, - UCF_USELESS_CONTROL_FLOW, - UC_USELESS_CONDITION, - NP_NULL_ON_SOME_PATH, - DM_FP_NUMBER_CTOR, - SQL_PREPARED_STATEMENT_GENERATED_FROM_NONCONSTANT_STRING, - OBL_UNSATISFIED_OBLIGATION_EXCEPTION_EDGE, - ES_COMPARING_STRINGS_WITH_EQ, - OS_OPEN_STREAM, - RCN_REDUNDANT_NULLCHECK_WOULD_HAVE_BEEN_A_NPE, - NP_PARAMETER_MUST_BE_NONNULL_BUT_MARKED_AS_NULLABLE, - - UC_USELESS_OBJECT, - OBL_UNSATISFIED_OBLIGATION, -} diff --git a/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/FixedViolationHunkParser.java b/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/FixedViolationHunkParser.java index ccf4804..4d885ea 100644 --- a/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/FixedViolationHunkParser.java +++ b/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/FixedViolationHunkParser.java @@ -1,25 +1,11 @@ package edu.lu.uni.serval.FixPatternParser.violations; -import java.io.*; -import java.util.ArrayList; -import java.util.HashMap; -import java.util.List; -import java.util.Map; - -import com.github.gumtreediff.actions.model.Delete; -import com.github.gumtreediff.actions.model.Insert; -import com.github.gumtreediff.actions.model.Move; -import com.github.gumtreediff.actions.model.Update; -import com.github.gumtreediff.tree.ITree; - -import edu.lu.uni.serval.FixPatternParser.Tokenizer; -import edu.lu.uni.serval.config.Configuration; -import edu.lu.uni.serval.diffentry.DiffEntryHunk; -import edu.lu.uni.serval.diffentry.DiffEntryReader; import edu.lu.uni.serval.gumtree.regroup.HierarchicalActionSet; -import edu.lu.uni.serval.gumtree.regroup.HunkActionFilter; -import edu.lu.uni.serval.gumtree.regroup.SimplifyTree; -import edu.lu.uni.serval.violation.code.parser.ViolationSourceCodeTree; + +import java.io.*; +import java.util.List; + + /** * Parse fix violations with GumTree in terms of multiple statements. @@ -97,232 +83,5 @@ public class FixedViolationHunkParser extends FixedViolationParser { } -// public void parseFixPatterns(File prevFile, File revFile, File diffentryFile) { -// // GumTree results -// List actionSets = parseChangedSourceCodeWithGumTree2(prevFile, revFile); -// -// -// if (this.resultType != 0) { -//// String type = ""; -//// if (this.resultType == 1) { -//// type = "#NullGumTreeResult:"; -//// } else if (this.resultType == 2) { -//// type = "#NoSourceCodeChange:"; -//// } else if (this.resultType == 3) { -//// type = "#NoStatementChange:"; -//// } -// } else { -// List diffentryHunks = new DiffEntryReader().readHunks3(diffentryFile); -// -// //Filter out the modify actions, which are not in the DiffEntry hunks. -// HunkActionFilter hunkFilter = new HunkActionFilter(); -// List selectedPatchHunks = hunkFilter.filterActionsByModifiedRange2(diffentryHunks, actionSets, revFile, prevFile); -// -// for (DiffEntryHunk patchHunk : selectedPatchHunks) { -// List hunkActionSets = patchHunk.getActionSets(); -// // multiple UPD, and some UPD contain other UPD. -// removeOverlapperdUPD(hunkActionSets); -// -// // Range of buggy source code -// int bugStartLine = 0; -// int bugEndLine = 0; -// // Range of fixing source code -// int fixStartLine = 0; -// int fixEndLine = 0; -// int bugEndPosition = 0; -// int fixEndPosition = 0; -// int hunkSet = 0; -// for (HierarchicalActionSet hunkActionSet : hunkActionSets) { -// -// -// FileOutputStream f = null; -// try { -// String pj = diffentryFile.getParent().split("GumTreeInputBug4")[1]; -// String root = "/Users/anilkoyuncu/bugStudy/dataset/GumTreeOutput2"; -// String hunkTreeFileName = root+pj.replace("DiffEntries","ASTDumps/") + diffentryFile.getName() + "_" + String.valueOf(hunkSet); -// f = new FileOutputStream(new File(hunkTreeFileName)); -// ObjectOutputStream o = new ObjectOutputStream(f); -// o.writeObject(hunkActionSet.getNode()); -// -// o.close(); -// f.close(); -// } catch (FileNotFoundException e) { -// e.printStackTrace(); -// } catch (IOException e) { -// e.printStackTrace(); -// } -// hunkSet++; -// -// -// -// int actionBugStart = hunkActionSet.getBugStartLineNum(); -// int actionBugEnd = hunkActionSet.getBugEndLineNum(); -// int actionFixStart = hunkActionSet.getFixStartLineNum(); -// int actionFixEnd = hunkActionSet.getFixEndLineNum(); -// if (bugStartLine == 0) { -// bugStartLine = actionBugStart; -// } else if (actionBugStart != 0 && actionBugStart < bugStartLine) { -// bugStartLine = actionBugStart; -// } -// if (fixStartLine == 0) { -// fixStartLine = actionFixStart; -// } else if (actionFixStart != 0 && actionFixStart < fixStartLine) { -// fixStartLine = actionFixStart; -// } -// if (bugEndLine < actionBugEnd) { -// bugEndLine = actionBugEnd; -// bugEndPosition = hunkActionSet.getBugEndPosition(); -// } -// if (fixEndLine < actionFixEnd) { -// fixEndLine = actionFixEnd; -// fixEndPosition = hunkActionSet.getFixEndPosition(); -// } -// } -// -// if (fixStartLine == 0 && bugStartLine == 0) { -// this.unfixedViolations += "#WRONG: " + revFile.getName() + ":" + patchHunk.getBugLineStartNum() + ", " + patchHunk.getBuggyHunkSize() + "\n"; -// this.nullMappingGumTreeResult ++; -// continue; -// } -// -// if (fixStartLine == 0 && bugStartLine != 0) {// pure delete actions. -// // get the exact buggy code by violation's position. TODO later -// } -// -//// if (children.size() == 0) continue; -// boolean isPureInsert = false; -// if (bugStartLine == 0 && patchHunk.getBugLineStartNum() > 0) { -// bugStartLine = patchHunk.getBugLineStartNum(); -// bugEndLine = bugStartLine + patchHunk.getBuggyHunkSize() - 1; -// isPureInsert = true; -//// continue; -// } -//// if ((bugEndLine - bugStartLine > Configuration.HUNK_SIZE ) || fixEndLine - fixStartLine > Configuration.HUNK_SIZE) { -//// continue; //TODO hunk size -//// } -// if(patchHunk.getBuggyHunkSize() > Configuration.HUNK_SIZE || patchHunk.getFixedHunkSize() > Configuration.HUNK_SIZE){ -// continue; -// } -// -// /** -// * Select edit scripts for deep learning. -// * Edit scripts will be used to mine common fix patterns. -// */ -// // 1. First level: AST node type. -// String astEditScripts = getASTEditScriptsDeepFirst(hunkActionSets, bugEndPosition, fixEndPosition); -// if (astEditScripts.contains("\n") || astEditScripts.split(" ").length % 3 != 0) { -// System.err.println("===+++===: " + revFile.getName() + ":" +patchHunk.getBugLineStartNum() + ", " + patchHunk.getBuggyHunkSize()); -// } -// // 2. source code: raw tokens -// // 3. abstract identifiers: -// // 4. semi-source code: -// String[] editScriptTokens = astEditScripts.split(" "); -// int size = editScriptTokens.length; -// if (size == 1) { -// this.nullMappingGumTreeResult ++; -// this.unfixedViolations += "#NullMatchedGumTreeResult1:" + revFile.getName() + ":" + patchHunk.getBugLineStartNum() + ", " + patchHunk.getBuggyHunkSize() + "\n"; -// continue; -// } -// -// String patchPosition = "\n" + revFile.getName() + "\n@@ -" + bugStartLine + ", " + bugEndLine + " +" + fixStartLine + ", " + fixEndLine + "@@\n"; -//// String info = Configuration.PATCH_SIGNAL + "\n" + patchPosition + patchHunk.getHunk() + "\nAST Diff###:\n" + getAstEditScripts(hunkActionSets, bugEndPosition, fixEndPosition) + "\n"; -////TODO uncomment the line below for more detailed gumtree input. -// String info = Configuration.PATCH_SIGNAL + "\n" + patchPosition + patchHunk.getHunk() + "\nAST Diff###:\n" + getAstEditScripts(hunkActionSets) + "\n"; -//// if (noUpdate(editScriptTokens)) { -//// } -// -// String canonicalVariableNames = getBuggyCodeTree(patchHunk, prevFile, revFile); -// this.patchesSourceCode += info; -// this.patchesSourceCode += "\nRenamed_Variables###:\n" + canonicalVariableNames; -// this.sizes += size + "\n"; -// this.astEditScripts += astEditScripts + "\n"; -//// String tokens = Tokenizer.getTokensDeepFirst(simpleTree).trim(); -//// this.tokensOfSourceCode += tokens + "\n"; -// } -// } -// } - - private String getAstEditScripts(List hunkActionSets) { - String scripts = ""; - for (HierarchicalActionSet hunkActionSet : hunkActionSets) { - scripts += hunkActionSet.toString() + "\n"; - } - return scripts; - } - - private String getBuggyCodeTree(DiffEntryHunk patchHunk, File prevFile, File revFile) { - int bugStartLine = patchHunk.getBugLineStartNum(); - int bugEndLine = bugStartLine + patchHunk.getBugRange() - 1; - - ViolationSourceCodeTree parser = new ViolationSourceCodeTree(prevFile, bugStartLine, bugEndLine); - parser.extract(); - List matchedTrees = parser.getViolationSourceCodeTrees(); - Map renamedVariablesMap = new HashMap<>(); - Map canonicalVariables = new HashMap<>(); - if (matchedTrees.size() > 0) { - SimplifyTree st = new SimplifyTree(); - for (ITree matchedTree : matchedTrees) { - st.canonicalizeSourceCodeTree(matchedTree); - } - renamedVariablesMap = st.canonicalVariableMap; - canonicalVariables = st.canonicalVariables; - } - - int fixStartLine = patchHunk.getFixLineStartNum(); - int fixEndLine = fixStartLine + patchHunk.getFixRange() - 1; - ViolationSourceCodeTree fixedParser = new ViolationSourceCodeTree(revFile, fixStartLine, fixEndLine); - fixedParser.extract(); - matchedTrees = fixedParser.getViolationSourceCodeTrees(); - if (matchedTrees.size() > 0) { - SimplifyTree st = new SimplifyTree(); - st.canonicalVariableMap = renamedVariablesMap; - st.canonicalVariables = canonicalVariables; - for (ITree matchedTree : matchedTrees) { - st.canonicalizeSourceCodeTree(matchedTree); - } - renamedVariablesMap = st.canonicalVariableMap; - } - - StringBuilder builder = new StringBuilder(); - for (Map.Entry entry : renamedVariablesMap.entrySet()) { - builder.append(entry.getKey()).append(" = ").append(entry.getValue()).append("\n"); - } - return builder.toString(); - } - - private void removeOverlapperdUPD(List actionSets) { - if (actionSets.size() == 1) { - return; - } - List updates = new ArrayList<>(); - for (HierarchicalActionSet actionSet : actionSets) { - if (actionSet.getActionString().startsWith("UPD")) { - updates.add(actionSet); - } - } - - List overlappedUpdates = new ArrayList<>(); - if (updates.size() > 1) { - for (HierarchicalActionSet update : updates) { - int startLine = update.getBugStartLineNum(); - int endLine = update.getBugEndLineNum(); - int endPosition = update.getBugEndPosition(); - for (HierarchicalActionSet update2 : updates) { - if (update.equals(update2)) continue; - int startLine2 = update2.getBugStartLineNum(); - int endLine2 = update2.getBugEndLineNum(); - int endPosition2 = update2.getBugEndPosition(); - if (startLine <= startLine2 - && endLine2 <= endLine && endPosition2 < endPosition) { - if (!overlappedUpdates.contains(update)) { - overlappedUpdates.add(update); - } - break; - } - } - } - } - actionSets.removeAll(overlappedUpdates); - } } diff --git a/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/FixedViolationParser.java b/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/FixedViolationParser.java index 264e854..3bbc4eb 100644 --- a/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/FixedViolationParser.java +++ b/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/FixedViolationParser.java @@ -1,21 +1,16 @@ package edu.lu.uni.serval.FixPatternParser.violations; -import java.io.BufferedReader; -import java.io.File; -import java.io.IOException; -import java.io.StringReader; -import java.util.ArrayList; -import java.util.List; - import com.github.gumtreediff.actions.model.Action; - import edu.lu.uni.serval.FixPatternParser.Parser; import edu.lu.uni.serval.gumtree.GumTreeComparer; import edu.lu.uni.serval.gumtree.regroup.HierarchicalActionSet; import edu.lu.uni.serval.gumtree.regroup.HierarchicalRegrouper; -import edu.lu.uni.serval.utils.FileHelper; import edu.lu.uni.serval.utils.ListSorter; +import java.io.File; +import java.util.ArrayList; +import java.util.List; + /** * Parse fix patterns with GumTree. * @@ -60,16 +55,7 @@ public class FixedViolationParser extends Parser { } else { // Regroup GumTre results. List allActionSets = new HierarchicalRegrouper().regroupGumTreeResults(gumTreeResults); -// for (HierarchicalActionSet actionSet : allActionSets) { -// String astNodeType = actionSet.getAstNodeType(); -// if (astNodeType.endsWith("Statement") || "FieldDeclaration".equals(astNodeType)) { -// actionSets.add(actionSet); -// } -// } - - // Filter out modified actions of changing method names, method parameters, variable names and field names in declaration part. - // variable effects range, sub-actions are these kinds of modification? -// actionSets.addAll(new ActionFilter().filterOutUselessActions(allActionSets)); + ListSorter sorter = new ListSorter<>(allActionSets); actionSets = sorter.sortAscending(); @@ -82,63 +68,14 @@ public class FixedViolationParser extends Parser { } } - /** - * Read patch source code from buggy and fixed files. - * @param prevFile - * @param revFile - * @param bugStartLineNum - * @param bugEndLineNum - * @param fixStartLineNum - * @param fixEndLineNum - * @param isInsert - * @return - */ - protected String getPatchSourceCode(File prevFile, File revFile, int bugStartLineNum, int bugEndLineNum, int fixStartLineNum, int fixEndLineNum, boolean isInsert) { - String buggyStatements = ""; - if (isInsert) { - buggyStatements = readSourceCode(prevFile, bugStartLineNum, bugEndLineNum, ""); - } else { - buggyStatements = readSourceCode(prevFile, bugStartLineNum, bugEndLineNum, "-"); - } - String fixedStatements = readSourceCode(revFile, fixStartLineNum, fixEndLineNum, "+"); - return buggyStatements + fixedStatements; - } - private String readSourceCode(File file, int startLineNum, int endLineNum, String type) { - String sourceCode = ""; - String fileContent = FileHelper.readFile(file); - BufferedReader reader = null; - try { - reader = new BufferedReader(new StringReader(fileContent)); - String line = null; - int lineIndex = 0; - while ((line = reader.readLine()) != null) { - lineIndex ++; - if (lineIndex >= startLineNum && lineIndex <= endLineNum) { - sourceCode += type + line + "\n"; - } - if (lineIndex == endLineNum) break; - } - } catch (IOException e) { - e.printStackTrace(); - } finally { - try { - reader.close(); - } catch (IOException e) { - e.printStackTrace(); - } - } - return sourceCode; - } - public String getAlarmTypes() { - return violationTypes; - } - @Override - public void parseFixPatterns(File prevFile, File revFile, File diffEntryFile) { - } +// @Override +// public void parseFixPatterns(File prevFile, File revFile, File diffEntryFile) { +// +// } // public void setUselessViolations(List uselessViolations) { // this.uselessViolations = uselessViolations; diff --git a/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/FixedViolationSingleStatementParser.java b/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/FixedViolationSingleStatementParser.java deleted file mode 100644 index 6fe1e46..0000000 --- a/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/FixedViolationSingleStatementParser.java +++ /dev/null @@ -1,156 +0,0 @@ -package edu.lu.uni.serval.FixPatternParser.violations; - -import java.io.File; -import java.util.List; - -import org.eclipse.jdt.core.dom.CompilationUnit; - -import com.github.gumtreediff.actions.model.Move; -import com.github.gumtreediff.actions.model.Update; -import com.github.gumtreediff.tree.ITree; - -import edu.lu.uni.serval.FixPattern.utils.Checker; -import edu.lu.uni.serval.FixPatternParser.CUCreator; -import edu.lu.uni.serval.FixPatternParser.Tokenizer; -import edu.lu.uni.serval.config.Configuration; -import edu.lu.uni.serval.gumtree.regroup.HierarchicalActionSet; -import edu.lu.uni.serval.gumtree.regroup.SimpleTree; -import edu.lu.uni.serval.gumtree.regroup.SimplifyTree; - -/** - * Parse fixed violations with GumTree in terms of single statement. - * - * @author kui.liu - * - */ -public class FixedViolationSingleStatementParser extends FixedViolationParser { - - @Override - public void parseFixPatterns(File prevFile, File revFile, File diffentryFile) { - // GumTree results - List actionSets = parseChangedSourceCodeWithGumTree(prevFile, revFile); - - if (actionSets.size() > 0) { - CUCreator cuCreator = new CUCreator(); - CompilationUnit prevUnit = cuCreator.createCompilationUnit(prevFile); - CompilationUnit revUnit = cuCreator.createCompilationUnit(revFile); - if (prevUnit == null || revUnit == null) { - return; - } - - // Read the positions of checked violations - for (HierarchicalActionSet actionSet : actionSets) { - // position of buggy statements - int startPosition = 0; - int endPosition = 0; - // position of fixed statements - int startPosition2 = 0; - int endPosition2 = 0; - - String actionStr = actionSet.getActionString(); - String astNodeType = actionSet.getAstNodeType(); - if (actionStr.startsWith("INS")) { - startPosition2 = actionSet.getStartPosition(); - endPosition2 = startPosition2 + actionSet.getLength(); - List firstAndLastMov = getFirstAndLastMoveAction(actionSet); - if (firstAndLastMov != null) { - startPosition = firstAndLastMov.get(0).getNode().getPos(); - ITree lastTree = firstAndLastMov.get(1).getNode(); - endPosition = lastTree.getPos() + lastTree.getLength(); - } else { // Ignore the pure insert actions without any move actions. - continue; - } - } else if (actionStr.startsWith("UPD")) { - startPosition = actionSet.getStartPosition(); - endPosition = startPosition + actionSet.getLength(); - Update update = (Update) actionSet.getAction(); - ITree newNode = update.getNewNode(); - startPosition2 = newNode.getPos(); - endPosition2 = startPosition2 + newNode.getLength(); - - if (Checker.containsBodyBlock(astNodeType)) { - List children = update.getNode().getChildren(); - endPosition = getEndPosition(children); - List newChildren = newNode.getChildren(); - endPosition2 = getEndPosition(newChildren); - - if (endPosition == 0) { - endPosition = startPosition + actionSet.getLength(); - } - if (endPosition2 == 0) { - endPosition2 = startPosition2 + newNode.getLength(); - } - } - } else {// DEL actions and MOV actions: we don't need these actions, as for now. - continue; - } - if (startPosition == 0 || startPosition2 == 0) { - continue; - } - - // Get line numbers. - int startLine = prevUnit.getLineNumber(startPosition); - int endLine = prevUnit.getLineNumber(endPosition); - int startLine2 = revUnit.getLineNumber(startPosition2); - int endLine2 = revUnit.getLineNumber(endPosition2); - - Violation violation = null;//findViolation(startLine, endLine, violations); - if (violation == null) continue; - - if (endLine - startLine >= Configuration.HUNK_SIZE - 2 || endLine2 - startLine2 >= Configuration.HUNK_SIZE - 2 ) continue; - - /* - * Convert the ITree of buggy code to a simple tree. - * It will be used to compute the similarity. - */ - SimplifyTree abstractIdentifier = new SimplifyTree(); - abstractIdentifier.abstractTree(actionSet); - SimpleTree simpleTree = actionSet.getSimpleTree(); - if (simpleTree == null) { // Failed to get the simple tree for INS actions. - continue; - } - - /** - * Select edit scripts for deep learning. - * Edit scripts will be used to mine common fix patterns. - */ - // 1. First level: AST node type. - String astEditScripts = getASTEditScriptsBreadthFirst(actionSet); - int size = astEditScripts.split(" ").length; - if (size == 1) { - continue; - } - - // Source Code of patches. - String patchSourceCode = getPatchSourceCode(prevFile, revFile, startLine, endLine, startLine2, endLine2, false); - this.patchesSourceCode += Configuration.PATCH_SIGNAL + "\n" + revFile.getName() + "\n" + patchSourceCode + "\n"; - this.sizes += size + "\n"; - this.astEditScripts += astEditScripts + "\n"; - this.violationTypes += violation.getViolationType() + "\n"; - // 2. source code: raw tokens -// String rawTokenEditScripts = getRawTokenEditScripts(actionSet); -// // 3. abstract identifiers: -// String abstractIdentifiersEditScripts = getAbstractIdentifiersEditScripts(actionSet); -// // 4. semi-source code: -// String semiSourceCodeEditScripts = getSemiSourceCodeEditScripts(actionSet); - -// this.buggyTrees += Configuration.BUGGY_TREE_TOKEN + "\n" + simpleTree.toString() + "\n"; - this.tokensOfSourceCode += Tokenizer.getTokensDeepFirst(simpleTree).trim() + "\n"; -// this.actionSets += Configuration.BUGGY_TREE_TOKEN + "\n" + readActionSet(actionSet, "") + "\n"; -// this.originalTree += Configuration.BUGGY_TREE_TOKEN + "\n" + actionSet.getOriginalTree().toString() + "\n"; - } - actionSets.clear(); - } else { - System.out.println(1); - } - } - - protected Violation findViolation(int startLine, int endLine, List violations) { - for (Violation violation : violations) { - int vStartLine = violation.getStartLineNum(); - int vEndLine = violation.getEndLineNum(); - if (!(startLine > vEndLine && endLine< vStartLine)) return violation; - } - return null; - } -} diff --git a/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/Message.java b/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/Message.java deleted file mode 100644 index 969a4c2..0000000 --- a/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/Message.java +++ /dev/null @@ -1,20 +0,0 @@ -package edu.lu.uni.serval.FixPatternParser.violations; - -import java.io.File; - -public class Message { - - private String name; - private String inputPath; - private String innerPort; - - public Message(String name , String inputPath, String innerPort) { - super(); - this.name = name; - this.inputPath = inputPath; - this.innerPort = innerPort; - } - - - -} diff --git a/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/Producer.java b/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/Producer.java deleted file mode 100644 index 53bd576..0000000 --- a/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/Producer.java +++ /dev/null @@ -1,150 +0,0 @@ -package edu.lu.uni.serval.FixPatternParser.violations; - -import com.rabbitmq.client.Channel; -import com.rabbitmq.client.Connection; -import com.rabbitmq.client.ConnectionFactory; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -import java.io.File; -import java.io.FilenameFilter; -import java.io.IOException; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.Collections; -import java.util.List; -import java.util.concurrent.TimeoutException; -import java.util.stream.Collectors; -import java.util.stream.Stream; - -/** - * Created by anilkoyuncu on 03/04/2018. - */ -public class Producer { - private static Logger log = LoggerFactory.getLogger(Producer.class); - public static void main(String[] args) { - - - String inputPath; - String outputPath; - String port; - String portInner; - String pairsCSVPath; - String importScript; - String pairsCompletedPath; - String serverWait; - if (args.length > 0) { - inputPath = args[0]; - port = args[1]; - portInner = args[2]; - serverWait = args[3]; -// pairsCSVPath = args[3]; -// importScript = args[4]; -// pairsCompletedPath = args[3]; - } else { - inputPath = "/Users/anilkoyuncu/bugStudy/dataset/GumTreeOutput2"; - outputPath = "/Users/anilkoyuncu/bugStudy/dataset/"; - port = "6379"; - portInner = "6380"; - serverWait = "10000"; - pairsCSVPath = "/Users/anilkoyuncu/bugStudy/dataset/pairs/test"; - importScript = "/Users/anilkoyuncu/bugStudy/dataset/pairs/test2.sh"; - pairsCompletedPath = "/Users/anilkoyuncu/bugStudy/dataset/pairs_completed"; - } - - - calculatePairs(inputPath, port); - log.info("Calculate pairs done"); - - - - } - public static void calculatePairs(String inputPath,String port) { - File folder = new File(inputPath); - File[] listOfFiles = folder.listFiles(); - Stream stream = Arrays.stream(listOfFiles); - List pjs = stream - .filter(x -> !x.getName().startsWith(".")) - .collect(Collectors.toList()); - - List fileToCompare = new ArrayList<>(); - for (File pj : pjs) { - File[] files = pj.listFiles(new FilenameFilter() { - public boolean accept(File dir, String name) { - return name.startsWith("ActionSetDumps"); - } - }); - Collections.addAll(fileToCompare, files[0].listFiles()); - - } - System.out.println("a"); -// compareAll(fileToCompare); - readMessageFiles(fileToCompare, port); - } - - private static void readMessageFiles(List folders, String port) { - - List treesFileNames = new ArrayList<>(); - - - for (File target : folders) { - - treesFileNames.add(target.toString()); - } - - - log.info("Calculating pairs"); - - int fileCounter = 0; - - ConnectionFactory factory = new ConnectionFactory(); - factory.setHost("10.240.5.10"); -// factory.setVirtualHost("treeCompare"); - factory.setPort(5672); - factory.setUsername("anil"); - factory.setPassword("changeme2018"); - factory.setConnectionTimeout(1000); - Connection connection = null; - Channel channel = null; - try { - connection = factory.newConnection(); - - channel = connection.createChannel(); - channel.queueDeclare("tree_queue", false, false, false, null); - - } catch (IOException e) { - e.printStackTrace(); - } catch (TimeoutException e) { - e.printStackTrace(); - } - - - for (int i = 0; i < treesFileNames.size(); i++) { - for (int j = i + 1; j < treesFileNames.size(); j++) { - - - // do operations with jedis resource - - String key = "pair_" + String.valueOf(i) + "_" + String.valueOf(j); -// String value = treesFileNames.get(i).split("GumTreeOutput2")[1] +","+treesFileNames.get(j).split("GumTreeOutput2")[1]; -// jedis.set(key,value); - - String message = key +","+treesFileNames.get(i).split("GumTreeOutput2")[1] + "," + treesFileNames.get(j).split("GumTreeOutput2")[1]; - try { - channel.basicPublish("", "tree_queue", null, message.getBytes()); - } catch (IOException e) { - e.printStackTrace(); - } - - - - - } - } - - - - - log.info("Done pairs"); - } -} diff --git a/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/Violation.java b/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/Violation.java deleted file mode 100644 index b22530a..0000000 --- a/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/Violation.java +++ /dev/null @@ -1,133 +0,0 @@ -package edu.lu.uni.serval.FixPatternParser.violations; - -import java.util.ArrayList; -import java.util.List; - -import edu.lu.uni.serval.diffentry.DiffEntryHunk; -import edu.lu.uni.serval.gumtree.regroup.HierarchicalActionSet; - -public class Violation implements Comparable { - - private String fileName = ""; - private Integer startLineNum; - private int endLineNum; - private int bugStartLineNum; - private int bugEndLineNum; - private int fixStartLineNum = 0; - private int fixEndLineNum; - private String violationType; - private List hunks = new ArrayList<>(); - private List actionSets; - private int bugFixStartLineNum = 0; // the heuristic matched fix start line of a violation - private int bugFixEndLineNum = 0; // the heuristic matched fix end line of a violation - - public Violation(Integer startLineNum, int endLineNum, String violationType) { - super(); - this.startLineNum = startLineNum; - this.endLineNum = endLineNum; - this.violationType = violationType; - this.actionSets = new ArrayList<>(); - } - - public String getFileName() { - return fileName; - } - - public void setFileName(String fileName) { - this.fileName = fileName; - } - - public Integer getStartLineNum() { - return startLineNum; - } - - public int getEndLineNum() { - return endLineNum; - } - - public int getBugStartLineNum() { - return bugStartLineNum; - } - - public void setBugStartLineNum(int bugStartLineNum) { - this.bugStartLineNum = bugStartLineNum; - } - - public int getBugEndLineNum() { - return bugEndLineNum; - } - - public void setBugEndLineNum(int bugEndLineNum) { - this.bugEndLineNum = bugEndLineNum; - } - - public int getFixStartLineNum() { - return fixStartLineNum; - } - - public void setFixStartLineNum(int fixStartLineNum) { - this.fixStartLineNum = fixStartLineNum; - } - - public int getFixEndLineNum() { - return fixEndLineNum; - } - - public void setFixEndLineNum(int fixEndLineNum) { - this.fixEndLineNum = fixEndLineNum; - } - - public List getHunks() { - return hunks; - } - - public void setHunks(List hunks) { - this.hunks = hunks; - } - - public String getViolationType() { - return violationType; - } - - public List getActionSets() { - return actionSets; - } - - public int getBugFixStartLineNum() { - return bugFixStartLineNum; - } - - public void setBugFixStartLineNum(int bugFixStartLineNum) { - this.bugFixStartLineNum = bugFixStartLineNum; - } - - public int getBugFixEndLineNum() { - return bugFixEndLineNum; - } - - public void setBugFixEndLineNum(int bugFixEndLineNum) { - this.bugFixEndLineNum = bugFixEndLineNum; - } - - @Override - public int compareTo(Violation v) { - return this.startLineNum.compareTo(v.startLineNum); - } - - @Override - public String toString() { - return this.startLineNum + " : " + this.endLineNum + " : " + this.violationType; - } - - @Override - public boolean equals(Object obj) { - if (obj instanceof Violation) { - Violation v = (Violation) obj; - if (this.fileName.equals(v.fileName) && this.violationType.equals(v.violationType) && this.startLineNum == v.startLineNum && this.endLineNum == v.endLineNum) { - return true; - } - } - return false; - } - -} diff --git a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser/AkkaParser.java b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser/AkkaParser.java deleted file mode 100644 index c1c1d7b..0000000 --- a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser/AkkaParser.java +++ /dev/null @@ -1,121 +0,0 @@ -package edu.lu.uni.serval.MultipleThreadsParser; - -import java.io.File; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.List; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -import akka.actor.ActorRef; -import akka.actor.ActorSystem; -import edu.lu.uni.serval.config.Configuration; -import edu.lu.uni.serval.utils.FileHelper; - -/** - * Multi-thread parser of parsing the difference between buggy code file and fixed code file. - * - * @author kui.liu - * - */ -public class AkkaParser { - - private static Logger log = LoggerFactory.getLogger(AkkaParser.class); - - /** - * Two parameters: - * First one: the root path of input data. - * Second one: the number of threads. - * Third one: the threshold of selecting patch hunks. - * @param args - */ - @SuppressWarnings("deprecation") - public static void main(String[] args) { -// String inputRootPath = args[0]; - int numberOfWorkers = 5; //Integer.parseInt(args[1]); - int hunkThreshold = 10; -// try { -// hunkThreshold = Integer.parseInt(args[2]); -// } catch (NumberFormatException e1) { -// hunkThreshold = 10; -// } - -// Configuration.ROOT_PATH = inputRootPath; - Configuration.HUNK_SIZE = hunkThreshold; - - List pjList = Arrays.asList("APACHE-CAMEL","APACHE-HBASE","APACHE-HIVE","COMMONS-CODEC","COMMONS-COLLECTIONS", - "COMMONS-COMPRESS","COMMONS-CONFIGURATION","COMMONS-CRYPTO","COMMONS-CSV","COMMONS-IO","COMMONS-LANG", - "COMMONS-MATH","COMMONS-WEAVER","JBOSS-ENTESB","JBOSS-JBMETA","SPRING-AMQP","SPRING-ANDROID","SPRING-BATCH", - "SPRING-BATCHADM","SPRING-DATACMNS","SPRING-DATAGRAPH","SPRING-DATAJPA","SPRING-DATAMONGO","SPRING-DATAREDIS", - "SPRING-DATAREST","SPRING-LDAP","SPRING-MOBILE","SPRING-ROO","SPRING-SEC","SPRING-SECOAUTH","SPRING-SGF","SPRING-SHDP", - "SPRING-SOCIAL","SPRING-SOCIALFB","SPRING-SOCIALLI","SPRING-SOCIALTW","SPRING-SPR","SPRING-SWF","SPRING-SWS","WILDFLY-ELY", - "WILDFLY-SWARM","WILDFLY-WFARQ","WILDFLY-WFCORE","WILDFLY-WFLY","WILDFLY-WFMP"); - for (String pj : pjList) { - String[] split = pj.split("-"); - String pjPath = split[0]; - String pjName = split[1]; -// String rootPath = "/Volumes/data/bugStudy/"; -// String DATASET_FILE_PATH = rootPath + "/dataset/GumTreeInput/" + pjName; -// String GIT_REPOSITORY_PATH = "/Users/anilkoyuncu/bugLocalizationStudy/irblsensitivity/data/" + pjPath + "/" + pjName + "/gitrepo/.git"; - log.info(pjName); - // input data - log.info("Get the input data..."); - final List msgFiles = getMessageFiles(Configuration.GUM_TREE_INPUT +pjName +"gitrepo/"); - log.info("MessageFiles: " + msgFiles.size()); - - // output path - final String editScriptsFilePath = Configuration.EDITSCRIPTS_FILE_PATH + pjName + "/"; - final String patchesSourceCodeFilePath = Configuration.PATCH_SOURCECODE_FILE_PATH+ pjName + "/"; - final String buggyTokensFilePath = Configuration.BUGGY_CODE_TOKEN_FILE_PATH+ pjName + "/"; - final String editScriptSizesFilePath = Configuration.EDITSCRIPT_SIZES_FILE_PATH+ pjName + "/"; - FileHelper.deleteDirectory(editScriptsFilePath); - FileHelper.deleteDirectory(patchesSourceCodeFilePath); - FileHelper.deleteDirectory(buggyTokensFilePath); - FileHelper.deleteDirectory(editScriptSizesFilePath); - - ActorSystem system = null; - ActorRef parsingActor = null; - final WorkMessage msg = new WorkMessage(0, msgFiles); - try { - log.info("Akka begins..."); - system = ActorSystem.create("Mining-FixPattern-System"); -// parsingActor = system.actorOf(ParseFixPatternActor.props(numberOfWorkers, editScriptsFilePath, -// patchesSourceCodeFilePath, buggyTokensFilePath, editScriptSizesFilePath), "mine-fix-pattern-actor"); - parsingActor.tell(msg, ActorRef.noSender()); - } catch (Exception e) { - system.shutdown(); - e.printStackTrace(); - } - } - - } - - /** - * Get violation-related files. - * - * @param gumTreeInput - * @return - */ - public static List getMessageFiles(String gumTreeInput) { - String inputPath = gumTreeInput; // prevFiles revFiles diffentryFile positionsFile - File revFilesPath = new File(inputPath + "revFiles/"); - File[] revFiles = revFilesPath.listFiles(); // project folders - List msgFiles = new ArrayList<>(); - - for (File revFile : revFiles) { - if (revFile.getName().endsWith(".java")) { - String fileName = revFile.getName(); - File prevFile = new File(gumTreeInput + "prevFiles/prev_" + fileName);// previous file - fileName = fileName.replace(".java", ".txt"); - File diffentryFile = new File(gumTreeInput + "diffentries/" + fileName); // DiffEntry file - File positionFile = new File(gumTreeInput + "positions/" + fileName); // position file - MessageFile msgFile = new MessageFile(revFile, prevFile, diffentryFile); - msgFile.setPositionFile(positionFile); - msgFiles.add(msgFile); - } - } - - return msgFiles; - } -} diff --git a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser/AkkaParser2.java b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser/AkkaParser2.java deleted file mode 100644 index b0057ae..0000000 --- a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser/AkkaParser2.java +++ /dev/null @@ -1,146 +0,0 @@ -package edu.lu.uni.serval.MultipleThreadsParser; - -import akka.actor.ActorRef; -import akka.actor.ActorSystem; -import edu.lu.uni.serval.config.Configuration; -import edu.lu.uni.serval.utils.FileHelper; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -import java.io.File; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.List; -import java.util.stream.Collectors; -import java.util.stream.Stream; - -/** - * Multi-thread parser of parsing the difference between buggy code file and fixed code file. - * - * @author kui.liu - * - */ -public class AkkaParser2 { - - private static Logger log = LoggerFactory.getLogger(AkkaParser2.class); - - /** - * Two parameters: - * First one: the root path of input data. - * Second one: the number of threads. - * Third one: the threshold of selecting patch hunks. - * @param args - */ - @SuppressWarnings("deprecation") - public static void main(String[] args) { - String inputRootPath; - String outputRootPath; - int numberOfWorkers; - if(args.length > 0){ - inputRootPath = args[0]; - outputRootPath = args[1]; - numberOfWorkers = Integer.parseInt(args[2]); - }else{ - inputRootPath = "/Users/anilkoyuncu/bugStudy/dataset/GumTreeInputBug"; - outputRootPath = "/Users/anilkoyuncu/bugStudy/dataset/GumTreeOutputBug/"; - numberOfWorkers = 1; - } - -// try { -// hunkThreshold = Integer.parseInt(args[2]); -// } catch (NumberFormatException e1) { -// hunkThreshold = 10; -// } - -// Configuration.ROOT_PATH = inputRootPath; -// log.info(Configuration.ROOT_PATH); -// Configuration.HUNK_SIZE = hunkThreshold; - - - - // input data -// String GUM_TREE_INPUT = inputRootPath + "GumTreeInput/"; - log.info("Get the input data..." + inputRootPath ); - - log.info("Set the output data..." + outputRootPath ); - - - File folder = new File(inputRootPath); - File[] listOfFiles = folder.listFiles(); - Stream stream = Arrays.stream(listOfFiles); - List folders = stream - .filter(x -> !x.getName().startsWith(".")) - .collect(Collectors.toList()); - - for (File target : folders) { - log.info("MessageFiles: " + target.toString()); - final List msgFiles = getMessageFiles(target.toString() + "/"); - log.info("MessageFiles: " + msgFiles.size()); - // output path - - - String pjName = target.getName(); - // output path - String GUM_TREE_OUTPUT = outputRootPath + pjName + "/"; - final String editScriptsFilePath = GUM_TREE_OUTPUT + "editScripts/"; - final String patchesSourceCodeFilePath =GUM_TREE_OUTPUT + "patchSourceCode/"; - final String buggyTokensFilePath = GUM_TREE_OUTPUT + "tokens/"; - final String editScriptSizesFilePath = GUM_TREE_OUTPUT + "editScriptSizes/"; - final String alarmTypesFilePath = GUM_TREE_OUTPUT + "alarmTypes/"; - - FileHelper.deleteDirectory(editScriptsFilePath); - FileHelper.deleteDirectory(patchesSourceCodeFilePath); - FileHelper.deleteDirectory(buggyTokensFilePath); - FileHelper.deleteDirectory(editScriptSizesFilePath); - - ActorSystem system = null; - ActorRef parsingActor = null; - final WorkMessage msg = new WorkMessage(0, msgFiles); - try { - log.info("Akka begins..."); - system = ActorSystem.create("Mining-FixPattern-System"); -// parsingActor = system.actorOf(ParseFixPatternActor.props(numberOfWorkers, editScriptsFilePath, -// patchesSourceCodeFilePath, buggyTokensFilePath, editScriptSizesFilePath), "mine-fix-pattern-actor"); - parsingActor.tell(msg, ActorRef.noSender()); - } catch (Exception e) { - system.shutdown(); - e.printStackTrace(); - } - - - } - - - } - - /** - * Get violation-related files. - * - * @param gumTreeInput - * @return - */ - public static List getMessageFiles(String gumTreeInput) { - String inputPath = gumTreeInput; // prevFiles revFiles diffentryFile positionsFile - File revFilesPath = new File(inputPath + "revFiles/"); - File[] revFiles = revFilesPath.listFiles(); // project folders - List msgFiles = new ArrayList<>(); - - for (File revFile : revFiles) { -// if (revFile.getName().endsWith(".c") || revFile.getName().endsWith(".h")) { - if (revFile.getName().endsWith(".java")) { - String fileName = revFile.getName(); - File prevFile = new File(gumTreeInput + "prevFiles/prev_" + fileName);// previous file - fileName = fileName.replace(".java", ".txt"); - File diffentryFile = new File(gumTreeInput + "DiffEntries/" + fileName); // DiffEntry file - File positionFile = new File(gumTreeInput + "positions/" + fileName); // position file - MessageFile msgFile = new MessageFile(revFile, prevFile, diffentryFile); - msgFile.setPositionFile(positionFile); - msgFiles.add(msgFile); - - } -// } - } - - return msgFiles; //.subList(10,20); - } -} diff --git a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser/ParseFixPatternActor.java b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser/ParseFixPatternActor.java index 3e8fdf5..46ea6df 100644 --- a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser/ParseFixPatternActor.java +++ b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser/ParseFixPatternActor.java @@ -1,15 +1,14 @@ package edu.lu.uni.serval.MultipleThreadsParser; -import java.util.List; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - import akka.actor.ActorRef; import akka.actor.Props; import akka.actor.UntypedActor; import akka.japi.Creator; import akka.routing.RoundRobinPool; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.util.List; public class ParseFixPatternActor extends UntypedActor { diff --git a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser/ParseFixPatternWorker.java b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser/ParseFixPatternWorker.java index 8f88ce3..3084dbe 100644 --- a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser/ParseFixPatternWorker.java +++ b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser/ParseFixPatternWorker.java @@ -1,28 +1,17 @@ package edu.lu.uni.serval.MultipleThreadsParser; -import java.io.BufferedReader; -import java.io.File; -import java.io.IOException; -import java.io.StringReader; -import java.util.List; -import java.util.concurrent.ExecutionException; -import java.util.concurrent.ExecutorService; -import java.util.concurrent.Executors; -import java.util.concurrent.Future; -import java.util.concurrent.TimeUnit; -import java.util.concurrent.TimeoutException; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - import akka.actor.Props; import akka.actor.UntypedActor; import akka.japi.Creator; import edu.lu.uni.serval.FixPatternParser.RunnableParser; import edu.lu.uni.serval.FixPatternParser.violations.FixedViolationHunkParser; -import edu.lu.uni.serval.FixPatternParser.violations.Violation; import edu.lu.uni.serval.config.Configuration; -import edu.lu.uni.serval.utils.FileHelper; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.io.File; +import java.util.List; +import java.util.concurrent.*; public class ParseFixPatternWorker extends UntypedActor { private static Logger log = LoggerFactory.getLogger(ParseFixPatternActor.class); @@ -79,10 +68,6 @@ public class ParseFixPatternWorker extends UntypedActor { File diffentryFile = msgFile.getDiffEntryFile(); -// File positionFile = msgFile.getPositionFile(); - /*if (revFile.getName().toLowerCase().contains("test")) { - continue; - }*/ FixedViolationHunkParser parser = new FixedViolationHunkParser(); final ExecutorService executor = Executors.newSingleThreadExecutor(); @@ -103,13 +88,7 @@ public class ParseFixPatternWorker extends UntypedActor { String editScript = parser.getAstEditScripts(); if ("".equals(editScript)) { -// if (parser.resultType == 1) { -// nullGumTreeResults += countAlarms(positionFile, ""); -// } else if (parser.resultType == 2) { -// noSourceCodeChanges += countAlarms(positionFile, ""); -// } else if (parser.resultType == 3) { -// noStatementChanges += countAlarms(positionFile, ""); -// } + } else { editScripts.append(editScript); patchesSourceCode.append(parser.getPatchesSourceCode()); @@ -118,29 +97,21 @@ public class ParseFixPatternWorker extends UntypedActor { counter ++; if (counter % 100 == 0) { -// FileHelper.outputToFile(editScriptsFilePath + "edistScripts_" + id + ".list", editScripts, true); -// FileHelper.outputToFile(patchesSourceCodeFilePath + "patches_" + id + ".list", patchesSourceCode, true); -// FileHelper.outputToFile(editScriptSizesFilePath + "sizes_" + id + ".list", sizes, true); -// FileHelper.outputToFile(buggyTokensFilePath + "tokens_" + id + ".list", tokens, true); editScripts.setLength(0); patchesSourceCode.setLength(0); sizes.setLength(0); tokens.setLength(0); log.info("Worker #" + id +" finialized parsing " + counter + " files..."); -// FileHelper.outputToFile("OUTPUT/testingInfo_" + id + ".list", testingInfo, true); testingInfo.setLength(0); } } } catch (TimeoutException e) { future.cancel(true); -// timeouts += countAlarms(positionFile, "#Timeout:"); System.err.println("#Timeout: " + revFile.getName()); } catch (InterruptedException e) { -// timeouts += countAlarms(positionFile, "#TimeInterrupted:"); System.err.println("#TimeInterrupted: " + revFile.getName()); e.printStackTrace(); } catch (ExecutionException e) { -// timeouts += countAlarms(positionFile, "#TimeAborted:"); System.err.println("#TimeAborted: " + revFile.getName()); e.printStackTrace(); } finally { @@ -149,24 +120,13 @@ public class ParseFixPatternWorker extends UntypedActor { } if (sizes.length() > 0) { -// FileHelper.outputToFile(editScriptsFilePath + "editScripts_" + id + ".list", editScripts, true); -// FileHelper.outputToFile(patchesSourceCodeFilePath + "patches_" + id + ".list", patchesSourceCode, true); -// FileHelper.outputToFile(editScriptSizesFilePath + "sizes_" + id + ".list", sizes, true); -// FileHelper.outputToFile(buggyTokensFilePath + "tokens_" + id + ".list", tokens, true); editScripts.setLength(0); patchesSourceCode.setLength(0); sizes.setLength(0); tokens.setLength(0); -// FileHelper.outputToFile("OUTPUT/testingInfo_" + id + ".list", testingInfo, true); testingInfo.setLength(0); } -// String statistic = "\nNullGumTreeResults: " + nullGumTreeResults + "\nNoSourceCodeChanges: " + noSourceCodeChanges + -// "\nNoStatementChanges: " + noStatementChanges + "\nNullDiffEntry: " + nullDiffEntry + "\nNullMatchedGumTreeResults: " + nullMappingGumTreeResults + -// "\nPureDeletion: " + pureDeletion + "\nLargeHunk: " + largeHunk + "\nNullSourceCode: " + nullSourceCode + -// "\nTestingInfo: " + testInfos + "\nTimeout: " + timeouts; -// FileHelper.outputToFile("OUTPUT/statistic_" + id + ".list", statistic, false); -// FileHelper.outputToFile("OUTPUT/UnfixedV_" + id + ".list", builder, false); log.info("Worker #" + id +"finialized parsing " + counter + " files..."); log.info("Worker #" + id + " finialized the work..."); diff --git a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser/SingleThreadParser.java b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser/SingleThreadParser.java deleted file mode 100644 index 80b03db..0000000 --- a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser/SingleThreadParser.java +++ /dev/null @@ -1,190 +0,0 @@ -package edu.lu.uni.serval.MultipleThreadsParser; - -import java.io.BufferedReader; -import java.io.File; -import java.io.IOException; -import java.io.StringReader; -import java.util.List; -import java.util.concurrent.ExecutionException; -import java.util.concurrent.ExecutorService; -import java.util.concurrent.Executors; -import java.util.concurrent.Future; -import java.util.concurrent.TimeUnit; -import java.util.concurrent.TimeoutException; - -import edu.lu.uni.serval.FixPatternParser.RunnableParser; -import edu.lu.uni.serval.FixPatternParser.violations.FixedViolationHunkParser; -import edu.lu.uni.serval.FixPatternParser.violations.Violation; -import edu.lu.uni.serval.config.Configuration; -import edu.lu.uni.serval.utils.FileHelper; - -public class SingleThreadParser { - - public static void main(String[] args) { - // output path - final String editScriptsFilePath = Configuration.EDITSCRIPTS_FILE_PATH; - final String patchesSourceCodeFilePath = Configuration.PATCH_SOURCECODE_FILE_PATH; - final String buggyTokensFilePath = Configuration.BUGGY_CODE_TOKEN_FILE_PATH; - final String editScriptSizesFilePath = Configuration.EDITSCRIPT_SIZES_FILE_PATH; - final String alarmTypesFilePath = Configuration.ALARM_TYPES_FILE_PATH; - FileHelper.deleteDirectory(editScriptsFilePath); - FileHelper.deleteDirectory(patchesSourceCodeFilePath); - FileHelper.deleteDirectory(buggyTokensFilePath); - FileHelper.deleteDirectory(editScriptSizesFilePath); - FileHelper.deleteDirectory(alarmTypesFilePath); - - final List files = AkkaParser.getMessageFiles(Configuration.GUM_TREE_INPUT); - - StringBuilder editScripts = new StringBuilder(); - StringBuilder patchesSourceCode = new StringBuilder(); - StringBuilder sizes = new StringBuilder(); - StringBuilder tokens = new StringBuilder(); - StringBuilder alarmTypes = new StringBuilder(); - StringBuilder testingInfo = new StringBuilder(); - - int counter = 0; - - int testViolations = 0; - int nullGumTreeResults = 0; - int noSourceCodeChanges = 0; - int noStatementChanges = 0; - int nullDiffEntry = 0; - int nullMappingGumTreeResults = 0; - int pureDeletion = 0; - int largeHunk = 0; - int nullSourceCode = 0; - int testInfos = 0; - int timeouts = 0; - StringBuilder builder = new StringBuilder(); - - for (MessageFile msgFile : files) { - File revFile = msgFile.getRevFile(); - File prevFile = msgFile.getPrevFile(); - File diffentryFile = msgFile.getDiffEntryFile(); - File positionFile = msgFile.getPositionFile(); - if (revFile.getName().toLowerCase().contains("test#") || revFile.getName().toLowerCase().contains("tests#")) { - testViolations += countAlarms(positionFile, "#TestViolation:"); - continue; - } - FixedViolationHunkParser parser = new FixedViolationHunkParser(); -// parser.setUselessViolations(uselessViolations); - - final ExecutorService executor = Executors.newSingleThreadExecutor(); - // schedule the work - final Future future = executor.submit(new RunnableParser(prevFile, revFile, diffentryFile, parser)); - try { - // wait for task to complete - future.get(Configuration.SECONDS_TO_WAIT, TimeUnit.SECONDS); - - nullDiffEntry += parser.nullMatchedDiffEntry; - nullMappingGumTreeResults += parser.nullMappingGumTreeResult; - pureDeletion += parser.pureDeletions; - largeHunk += parser.largeHunk; - nullSourceCode += parser.nullSourceCode; - testInfos += parser.testInfos; - testingInfo.append(parser.testingInfo); - builder.append(parser.unfixedViolations); - - String editScript = parser.getAstEditScripts(); - if ("".equals(editScript)) { - if (parser.resultType == 1) { - nullGumTreeResults += countAlarms(positionFile, ""); - } else if (parser.resultType == 2) { - noSourceCodeChanges += countAlarms(positionFile, ""); - } else if (parser.resultType == 3) { - noStatementChanges += countAlarms(positionFile, ""); -// } else if (parser.resultType == 4) { - } - } else { - editScripts.append(editScript); - patchesSourceCode.append(parser.getPatchesSourceCode()); - sizes.append(parser.getSizes()); - alarmTypes.append(parser.getAlarmTypes()); - tokens.append(parser.getTokensOfSourceCode()); - - counter ++; - if (counter % 5000 == 0) { - FileHelper.outputToFile(editScriptsFilePath + "edistScripts.list", editScripts, true); - FileHelper.outputToFile(patchesSourceCodeFilePath + "patches.list", patchesSourceCode, true); - FileHelper.outputToFile(editScriptSizesFilePath + "sizes.list", sizes, true); - FileHelper.outputToFile(buggyTokensFilePath + "tokens.list", tokens, true); - editScripts.setLength(0); - patchesSourceCode.setLength(0); - sizes.setLength(0); - tokens.setLength(0); - FileHelper.outputToFile(alarmTypesFilePath + "alarmTypes.list", alarmTypes, true); - alarmTypes.setLength(0); - FileHelper.outputToFile("OUTPUT/testingInfo.list", testingInfo, true); - testingInfo.setLength(0); - } - } - } catch (TimeoutException e) { -// err.println("task timed out"); - future.cancel(true); - timeouts += countAlarms(positionFile, "#Timeout:"); -// System.err.println("#Timeout: " + revFile.getName()); - } catch (InterruptedException e) { - timeouts += countAlarms(positionFile, "#TimeInterrupted:"); -// err.println("task interrupted"); -// System.err.println("#TimeInterrupted: " + revFile.getName()); - } catch (ExecutionException e) { - timeouts += countAlarms(positionFile, "#TimeAborted:"); -// err.println("task aborted"); -// System.err.println("#TimeAborted: " + revFile.getName()); - } finally { - executor.shutdownNow(); - } - } - - if (sizes.length() > 0) { - FileHelper.outputToFile(editScriptsFilePath + "edistScripts.list", editScripts, true); - FileHelper.outputToFile(patchesSourceCodeFilePath + "patches.list", patchesSourceCode, true); - FileHelper.outputToFile(editScriptSizesFilePath + "sizes.list", sizes, true); - FileHelper.outputToFile(buggyTokensFilePath + "tokens.list", tokens, true); - editScripts.setLength(0); - patchesSourceCode.setLength(0); - sizes.setLength(0); - tokens.setLength(0); - - FileHelper.outputToFile(alarmTypesFilePath + "alarmTypes.list", alarmTypes, true); - alarmTypes.setLength(0); - FileHelper.outputToFile("OUTPUT/testingInfo.list", testingInfo, true); - testingInfo.setLength(0); - } - String statistic = "TestViolations: " + testViolations + "\nNullGumTreeResults: " + nullGumTreeResults + "\nNoSourceCodeChanges: " + noSourceCodeChanges + - "\nNoStatementChanges: " + noStatementChanges + "\nNullDiffEntry: " + nullDiffEntry + "\nNullMatchedGumTreeResults: " + nullMappingGumTreeResults + - "\nPureDeletion: " + pureDeletion + "\nLargeHunk: " + largeHunk + "\nNullSourceCode: " + nullSourceCode + - "\nTestingInfo: " + testInfos + "\nTimeout: " + timeouts; - FileHelper.outputToFile("OUTPUT/statistic.list", statistic, false); - FileHelper.outputToFile("OUTPUT/UnfixedV.list", builder, false); - } - - private static int countAlarms(File positionFile, String type) {//, List uselessViolations) { - int counter = 0; - String content = FileHelper.readFile(positionFile); - BufferedReader reader = new BufferedReader(new StringReader(content)); - String line = null; - try { - while ((line = reader.readLine()) != null) { - String[] elements = line.split(":"); - Violation v = new Violation(Integer.parseInt(elements[1]), Integer.parseInt(elements[2]), elements[0]); - String fileName = positionFile.getName().replace(".txt", ".java"); - v.setFileName(fileName); - counter ++; - if (!"".equals(type)) { - System.err.println(type + fileName + ":" + elements[1] + ":" + elements[2] + ":" + elements[0]); - } - } - } catch (IOException e) { - e.printStackTrace(); - } finally { - try { - reader.close(); - } catch (IOException e) { - e.printStackTrace(); - } - } - return counter; - } - -} diff --git a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/AkkaMatcher.java b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/AkkaMatcher.java deleted file mode 100644 index 0f59221..0000000 --- a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/AkkaMatcher.java +++ /dev/null @@ -1,214 +0,0 @@ -package edu.lu.uni.serval.MultipleThreadsParser2; - -import java.io.File; -import java.io.FileInputStream; -import java.io.FileNotFoundException; -import java.io.IOException; -import java.util.ArrayList; -import java.util.HashMap; -import java.util.List; -import java.util.Map; -import java.util.Scanner; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -import akka.actor.ActorRef; -import akka.actor.ActorSystem; -import edu.lu.uni.serval.MultipleThreadsParser.MessageFile; -import edu.lu.uni.serval.config.Configuration; -import edu.lu.uni.serval.utils.FileHelper; -import edu.lu.uni.serval.utils.MapSorter; - -/** - * Multi-thread parser of parsing the difference between buggy code file and fixed code file. - * - * @author kui.liu - * - */ -public class AkkaMatcher { - - private static Logger log = LoggerFactory.getLogger(AkkaMatcher.class); - - public static void main(String[] args) { - List extractedFeatures = readStringList(Configuration.ROOT_PATH + "TestData/2_CNNinput.csv"); - int size = extractedFeatures.size(); - List trainingFeatures = extractedFeatures.subList(0, size - 178); - List bugFeatures = extractedFeatures.subList(size - 178, size); - - - for (int index = 0; index < 178; index ++) { -// AkkaMatcher computor = new AkkaMatcher(); -// computor.matchFixPatterns(bugFeatures.get(index), index, trainingFeatures); - Map similarities = new HashMap<>(); - for (int i = 0; i < size - 178; i ++) { - Double similarity = Math.abs(computeSimilarity(bugFeatures.get(index), trainingFeatures.get(i))); - similarities.put(i + 1, similarity); - } - - MapSorter mapSorter = new MapSorter(); - Map sortedSimilarities = mapSorter.sortByValueDescending(similarities); - - List similarityList = new ArrayList<>(); - double similarity = 0; - int num = 0; - for (Map.Entry entry : sortedSimilarities.entrySet()) { - if (entry.getValue().equals(Double.NaN)) { - continue; - } - if (entry.getValue() == similarity) { - continue; - } - similarityList.add(entry.getKey()); - similarity = entry.getValue(); - if (++ num % 100 == 0) { - break; - } - } - outputMatchedPatterns(similarityList, index + 1); - } - - } - - private static Double computeSimilarity(Double[] feature, Double[] trainingFeature) { - Double similarity = DistanceCalculator.cosineSimilarityDistance(trainingFeature, feature); - return similarity; - } - - private static void outputMatchedPatterns(List similarityList, int bugId) { - String outputFile = Configuration.ROOT_PATH + "TestData/MatchedFixPatterns/Bug_" + bugId + ".list"; - StringBuilder builder = new StringBuilder("BugId: " + bugId + "\n\n\n"); - - for (int i = 0, size = similarityList.size(); i < size; i ++) { - int patternPosition = similarityList.get(i); - builder.append(readPattern(patternPosition)); - } - - FileHelper.outputToFile(outputFile, builder, false); - } - - private static String readPattern(int patternPosition) { - String patternInfo = ""; - FileInputStream fis = null; - Scanner scanner = null; - try { - fis = new FileInputStream(Configuration.SELECTED_PATCHES_SOURE_CODE_FILE); - scanner = new Scanner(fis); - int index = 0; - while (scanner.hasNextLine()) { - String line = scanner.nextLine(); - if (line.equals("PATCH###")) { - if (patternPosition == index) { - break; - } - index ++; - patternInfo = ""; - } - patternInfo += line + "\n"; - } - } catch (FileNotFoundException e) { - e.printStackTrace(); - } finally { - try { - scanner.close(); - fis.close(); - } catch (IOException e) { - e.printStackTrace(); - } - } - return patternInfo; - } - - @SuppressWarnings("deprecation") - public void matchFixPatterns(Double[] bugFeature, int bugIndex, List trainingFeatures) { - ActorSystem system = null; - ActorRef parsingActor = null; - int numberOfWorkers = 100; - final WorkMessage msg = new WorkMessage(bugIndex, bugFeature, trainingFeatures); - try { - log.info("Akka begins..."); - system = ActorSystem.create("Matching-FixPattern-System"); - parsingActor = system.actorOf(MatchFixPatternActor.props(numberOfWorkers), "match-fix-pattern-actor"); - parsingActor.tell(msg, ActorRef.noSender()); - } catch (Exception e) { - system.shutdown(); - e.printStackTrace(); - } - } - - - /** - * Get bug commit-related files. - * - * @return - */ - public static List getMessageFiles() { - String inputPath = Configuration.GUM_TREE_INPUT; //DiffEntries prevFiles revFiles - File inputFileDirector = new File(inputPath); - File[] files = inputFileDirector.listFiles(); // project folders - log.info("Projects: " + files.length); - List msgFiles = new ArrayList<>(); - - for (File file : files) { - if (!file.isDirectory()) continue; -// if (!(file.getName().startsWith("k") || file.getName().startsWith("l"))) continue; - if (file.getName().startsWith("a") || file.getName().startsWith("b") - || file.getName().startsWith("c") || file.getName().startsWith("d") - || file.getName().startsWith("e") || file.getName().startsWith("f") - || file.getName().startsWith("g") || file.getName().startsWith("h") - ||file.getName().startsWith("h") || file.getName().startsWith("i") - || file.getName().startsWith("k") || file.getName().startsWith("l") - || file.getName().startsWith("j") || file.getName().startsWith("t")) continue; -// if (!file.getName().startsWith("j")) continue; - log.info("Project name: " + file.getName()); - String projectFolder = file.getPath(); - File revFileFolder = new File(projectFolder + "/revFiles/");// revised file folder - File[] revFiles = revFileFolder.listFiles(); - for (File revFile : revFiles) { - if (revFile.getName().endsWith(".java")) { - File prevFile = new File(projectFolder + "/prevFiles/prev_" + revFile.getName());// previous file - File diffentryFile = new File(projectFolder + "/DiffEntries/" + revFile.getName().replace(".java", ".txt")); // DiffEntry file - MessageFile msgFile = new MessageFile(revFile, prevFile, diffentryFile); - msgFiles.add(msgFile); - } - } - } - - return msgFiles; - } - - public static List readStringList(String inputFile) { - List list = new ArrayList<>(); - FileInputStream fis = null; - Scanner scanner = null; - try { - fis = new FileInputStream(inputFile); - scanner = new Scanner(fis); - while(scanner.hasNextLine()) { - String line = scanner.nextLine(); - Double[] features = doubleParseFeature(line); - list.add(features); - } - } catch (FileNotFoundException e) { - e.printStackTrace(); - } finally { - try { - scanner.close(); - fis.close(); - } catch (IOException e) { - e.printStackTrace(); - } - } - return list; - } - - private static Double[] doubleParseFeature(String feature) { - String[] features = feature.split(", "); - int length = features.length; - Double[] doubleFeatures = new Double[length]; - for (int i = 0; i < length; i ++) { - doubleFeatures[i] = Double.parseDouble(features[i]); - } - return doubleFeatures; - } -} diff --git a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/DistanceCalculator.java b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/DistanceCalculator.java deleted file mode 100644 index 8ce4a9a..0000000 --- a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/DistanceCalculator.java +++ /dev/null @@ -1,68 +0,0 @@ -package edu.lu.uni.serval.MultipleThreadsParser2; - -public class DistanceCalculator { - - public static double calculateDistance(DistanceFunction distanceType, Double[] targetPoint, Double[] selfPoint) { - double distance = 0; - switch (distanceType) { - case EUCLIDEAN: - distance = DistanceCalculator.euclideanDistance(targetPoint, selfPoint); - break; - case COSINESIMILARITY: - distance = DistanceCalculator.cosineSimilarityDistance(targetPoint, selfPoint); - break; - case MANHATTAN: - distance = DistanceCalculator.manhattanDistance(targetPoint, selfPoint); - break; - default: - distance = DistanceCalculator.euclideanDistance(targetPoint, selfPoint); - break; - } - return distance; - } - - public static double euclideanDistance(Double[] targetPoint, Double[] selfPoint) { - double sum = 0.0; - - for (int i = 0, length = targetPoint.length; i < length; i++) { - double diff = targetPoint[i] - selfPoint[i]; - sum += diff * diff; - } - return Math.sqrt(sum); - } - - public static Double cosineSimilarityDistance(Double[] targetPoint, Double[] selfPoint) { - Double sim = 0.0d; - int length = targetPoint.length; - double dot = 0.0d; - double mag1 = 0.0d; - double mag2 = 0.0d; - - for (int i = 0; i < length; i ++) { - dot += targetPoint[i] * selfPoint[i]; - mag1 += Math.pow(targetPoint[i], 2); - mag2 += Math.pow(selfPoint[i], 2); - } - - sim = dot / (Math.sqrt(mag1) * Math.sqrt(mag2)); - return sim; - } - - public static Double manhattanDistance(Double[] targetPoint, Double[] selfPoint) { - double result = 0.0; - for (int i = 0; i < targetPoint.length; i++) { - result += Math.abs(selfPoint[i] - targetPoint[i]); - } - return result; - } - - public static Double minkowskiDistance(Double[] targetPoint, Double[] selfPoint) { - return null; - } - - public static Double jaccardSimilarity(Double[] targetPoint, Double[] selfPoint) { - return null; - } - -} - diff --git a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/DistanceFunction.java b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/DistanceFunction.java deleted file mode 100644 index a54b3a3..0000000 --- a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/DistanceFunction.java +++ /dev/null @@ -1,5 +0,0 @@ -package edu.lu.uni.serval.MultipleThreadsParser2; - -public enum DistanceFunction { - EUCLIDEAN, COSINESIMILARITY, MANHATTAN -} diff --git a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/MatchFixPatternActor.java b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/MatchFixPatternActor.java deleted file mode 100644 index 754375b..0000000 --- a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/MatchFixPatternActor.java +++ /dev/null @@ -1,172 +0,0 @@ -package edu.lu.uni.serval.MultipleThreadsParser2; - -import java.io.FileInputStream; -import java.io.FileNotFoundException; -import java.io.IOException; -import java.util.ArrayList; -import java.util.HashMap; -import java.util.List; -import java.util.Map; -import java.util.Scanner; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -import akka.actor.ActorRef; -import akka.actor.Props; -import akka.actor.UntypedActor; -import akka.japi.Creator; -import akka.routing.RoundRobinPool; -import edu.lu.uni.serval.config.Configuration; -import edu.lu.uni.serval.utils.FileHelper; -import edu.lu.uni.serval.utils.ListSorter; -import edu.lu.uni.serval.utils.MapSorter; - -public class MatchFixPatternActor extends UntypedActor { - - private static Logger logger = LoggerFactory.getLogger(MatchFixPatternActor.class); - - private ActorRef mineRouter; - private final int numberOfWorkers; - private int counter = 0; - - public MatchFixPatternActor(int numberOfWorkers) { - mineRouter = this.getContext().actorOf(new RoundRobinPool(numberOfWorkers) - .props(MatchFixPatternWorker.props()), "match-fix-pattern-router"); - this.numberOfWorkers = numberOfWorkers; - } - - public static Props props(final int numberOfWorkers) { - - return Props.create(new Creator() { - - private static final long serialVersionUID = 9207427376110704705L; - - @Override - public MatchFixPatternActor create() throws Exception { - return new MatchFixPatternActor(numberOfWorkers); - } - - }); - } - - @SuppressWarnings("deprecation") - @Override - public void onReceive(Object message) throws Exception { - if (message instanceof WorkMessage) { - WorkMessage msg = (WorkMessage) message; - List trainingFeatures = msg.getTrainingFeatures(); - int size = trainingFeatures.size(); - int average = size / numberOfWorkers; - this.bugId = msg.getId(); - Double[] bugFeature = msg.getBugFeature(); - - for (int i = 0; i < numberOfWorkers; i ++) { - int fromIndex = i * average; - int toIndex = (i + 1) * average; - if (i == numberOfWorkers - 1) { - toIndex = size; - } - - List subTrainingFeatures = new ArrayList<>(); - subTrainingFeatures.addAll(trainingFeatures.subList(fromIndex, toIndex)); - final WorkMessage workMsg = new WorkMessage(bugId, bugFeature, subTrainingFeatures); - workMsg.setNum(i + 1); - mineRouter.tell(workMsg, getSelf()); - logger.info("Assign a task to worker #" + (i + 1) + "..."); - } - } else if (message instanceof ReturnMessage) { - counter ++; - logger.info(counter + " workers finished their work..."); - ReturnMessage rMsg = (ReturnMessage) message; - returnMessages.add(rMsg); - - if (counter >= numberOfWorkers) { - ListSorter sorter = new ListSorter(returnMessages); - returnMessages = sorter.sortAscending(); - - Map similarities = new HashMap<>(); - int index = 0; - for (int i = 0; i < numberOfWorkers; i ++) { - ReturnMessage returnMessage = returnMessages.get(i); - List similarity = returnMessage.getSimilarities(); - for (int j = 0, size = similarity.size(); j < size; j ++) { - index ++; - similarities.put(index, similarity.get(j)); - } - } - - MapSorter mapSorter = new MapSorter(); - Map sortedSimilarities = mapSorter.sortByValueDescending(similarities); - - List similarityList = new ArrayList<>(); - double similarity = 0; - int num = 0; - for (Map.Entry entry : sortedSimilarities.entrySet()) { - if (entry.getValue() == similarity) { - continue; - } - similarityList.add(entry.getKey()); - similarity = entry.getValue(); - if (++ num % 100 == 0) { - break; - } - } - outputMatchedPatterns(similarityList); - logger.info("All workers finished their work..."); - this.getContext().stop(mineRouter); - this.getContext().stop(getSelf()); - this.getContext().system().shutdown(); - } - } else { - unhandled(message); - } - } - - private void outputMatchedPatterns(List similarityList) { - String outputFile = Configuration.ROOT_PATH + "TestData/MatchedFixPatterns/Bug_" + bugId + ".list"; - StringBuilder builder = new StringBuilder("BugId: " + bugId + "\n\n\n"); - - for (int i = 0, size = similarityList.size(); i < size; i ++) { - int patternPosition = similarityList.get(i); - builder.append(readPattern(patternPosition)); - } - - FileHelper.outputToFile(outputFile, builder, false); - } - - private String readPattern(int patternPosition) { - String patternInfo = ""; - FileInputStream fis = null; - Scanner scanner = null; - try { - fis = new FileInputStream(Configuration.SELECTED_PATCHES_SOURE_CODE_FILE); - scanner = new Scanner(fis); - int index = 0; - while (scanner.hasNextLine()) { - String line = scanner.nextLine(); - if (line.equals("PATCH###")) { - if (patternPosition == index) { - break; - } - index ++; - patternInfo = ""; - } - patternInfo += line + "\n"; - } - } catch (FileNotFoundException e) { - e.printStackTrace(); - } finally { - try { - scanner.close(); - fis.close(); - } catch (IOException e) { - e.printStackTrace(); - } - } - return patternInfo; - } - - private int bugId; - private List returnMessages = new ArrayList<>(); -} diff --git a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/MatchFixPatternWorker.java b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/MatchFixPatternWorker.java deleted file mode 100644 index 5470afb..0000000 --- a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/MatchFixPatternWorker.java +++ /dev/null @@ -1,60 +0,0 @@ -package edu.lu.uni.serval.MultipleThreadsParser2; - -import java.util.ArrayList; -import java.util.List; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -import akka.actor.Props; -import akka.actor.UntypedActor; -import akka.japi.Creator; - -public class MatchFixPatternWorker extends UntypedActor { - private static Logger log = LoggerFactory.getLogger(MatchFixPatternActor.class); - - public MatchFixPatternWorker() { - } - - public static Props props() { - return Props.create(new Creator() { - - private static final long serialVersionUID = -7615153844097275009L; - - @Override - public MatchFixPatternWorker create() throws Exception { - return new MatchFixPatternWorker(); - } - - }); - } - - @Override - public void onReceive(Object message) throws Exception { - if (message instanceof WorkMessage) { - WorkMessage msg = (WorkMessage) message; - List trainingFeatures = msg.getTrainingFeatures(); - Double[] bugFeature = msg.getBugFeature(); - int bugID = msg.getId(); - int workNum = msg.getNum(); - - List similarities = new ArrayList<>(); - for (int i = 0, size = trainingFeatures.size(); i < size; i ++) { - Double similarity = Math.abs(computeSimilarity(bugFeature, trainingFeatures.get(i))); - similarities.add(similarity); - } - - final ReturnMessage rMsg = new ReturnMessage(bugID, workNum, similarities); - log.info("Worker #" + workNum + " finished the work..."); - this.getSender().tell(rMsg, getSelf()); - } else { - unhandled(message); - } - } - - private Double computeSimilarity(Double[] feature, Double[] trainingFeature) { - Double similarity = DistanceCalculator.cosineSimilarityDistance(trainingFeature, feature); - return similarity; - } - -} diff --git a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/ReturnMessage.java b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/ReturnMessage.java deleted file mode 100644 index af52dd7..0000000 --- a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/ReturnMessage.java +++ /dev/null @@ -1,35 +0,0 @@ -package edu.lu.uni.serval.MultipleThreadsParser2; - -import java.util.List; - -public class ReturnMessage implements Comparable{ - - private int bugId; - private Integer workerId; - private List similarities; - - public ReturnMessage(int bugId, int workerId, List similarities) { - super(); - this.bugId = bugId; - this.workerId = workerId; - this.similarities = similarities; - } - - public int getBugId() { - return bugId; - } - - public int getWorkerId() { - return workerId; - } - - public List getSimilarities() { - return similarities; - } - - @Override - public int compareTo(ReturnMessage o) { - return this.workerId.compareTo(o.workerId); - } - -} diff --git a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/WorkMessage.java b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/WorkMessage.java deleted file mode 100644 index b6e8356..0000000 --- a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser2/WorkMessage.java +++ /dev/null @@ -1,39 +0,0 @@ -package edu.lu.uni.serval.MultipleThreadsParser2; - -import java.util.List; - -public class WorkMessage { - - private int id; - private Double[] bugFeature; - private List trainingFeatures; - private int num; - - public WorkMessage(int id, Double[] bugFeature, List trainingFeatures) { - super(); - this.id = id; - this.bugFeature = bugFeature; - this.trainingFeatures = trainingFeatures; - } - - public int getId() { - return id; - } - - public Double[] getBugFeature() { - return bugFeature; - } - - public List getTrainingFeatures() { - return trainingFeatures; - } - - public int getNum() { - return num; - } - - public void setNum(int num) { - this.num = num; - } - -} diff --git a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser3/AkkaParser.java b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser3/AkkaParser.java deleted file mode 100644 index 40a8917..0000000 --- a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser3/AkkaParser.java +++ /dev/null @@ -1,90 +0,0 @@ -package edu.lu.uni.serval.MultipleThreadsParser3; - -import java.io.File; -import java.util.ArrayList; -import java.util.List; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -import akka.actor.ActorRef; -import akka.actor.ActorSystem; -import edu.lu.uni.serval.MultipleThreadsParser.MessageFile; -import edu.lu.uni.serval.MultipleThreadsParser.WorkMessage; -import edu.lu.uni.serval.config.Configuration; -import edu.lu.uni.serval.utils.FileHelper; - -/** - * Multi-thread parser of parsing source code of unfixed violations. - * - * @author kui.liu - * - */ -public class AkkaParser { - - private static Logger log = LoggerFactory.getLogger(AkkaParser.class); - - @SuppressWarnings("deprecation") - public static void main(String[] args) { - String violationType = Configuration.GUM_TREE_INPUT + "UnfixedViolations/"; - File file = new File(violationType); - File[] violationTypes = file.listFiles(); - for (File violationT : violationTypes) { - if (violationT.isDirectory()) { - violationType = violationT.getName(); - if (//violationType.equals("SF_SWITCH_NO_DEFAULT") || -// violationType.equals("SE_NO_SERIALVERSIONID") || - violationType.equals("DM_DEFAULT_ENCODING")) { - // input data - log.info("Get the input data..."); - final List msgFiles = getMessageFiles(Configuration.GUM_TREE_INPUT, violationType); - log.info("MessageFiles: " + msgFiles.size()); - - // output path - final String sourceCodeFilesPath = Configuration.ROOT_PATH + "UnfixedViolations_RQ3/" + violationType + "/"; - FileHelper.deleteDirectory(sourceCodeFilesPath); - - ActorSystem system = null; - ActorRef parsingActor = null; - int numberOfWorkers = 200; - final WorkMessage msg = new WorkMessage(0, msgFiles); - try { - log.info("Akka begins..."); - system = ActorSystem.create("Mining-Pattern-System-" + violationType); - parsingActor = system.actorOf(ParseFixPatternActor.props(numberOfWorkers, sourceCodeFilesPath, violationType), "mine-pattern-actor-" + violationType); - parsingActor.tell(msg, ActorRef.noSender()); - } catch (Exception e) { - system.shutdown(); - e.printStackTrace(); - } - } - } - } - } - - - /** - * Get violation-related files. - * - * @param gumTreeInput - * @return - */ - public static List getMessageFiles(String inputPath, String violationType) { - File sourceCodeFilesPath = new File(inputPath + "UnfixedViolations/" + violationType + "/"); - File[] sourceCodeFiles = sourceCodeFilesPath.listFiles(); // project folders - List msgFiles = new ArrayList<>(); - - for (File sourceCodeFile : sourceCodeFiles) { - if (sourceCodeFile.getName().endsWith(".java")) { - String fileName = sourceCodeFile.getName(); - fileName = fileName.substring(8).replace(".java", ".txt"); - File positionFile = new File(inputPath + "UnFV_positions/" + violationType + "/" + fileName); // position file - MessageFile msgFile = new MessageFile(null, sourceCodeFile, null); - msgFile.setPositionFile(positionFile); - msgFiles.add(msgFile); - } - } - - return msgFiles; - } -} diff --git a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser3/AkkaParser2.java b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser3/AkkaParser2.java deleted file mode 100644 index 6354a9f..0000000 --- a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser3/AkkaParser2.java +++ /dev/null @@ -1,78 +0,0 @@ -package edu.lu.uni.serval.MultipleThreadsParser3; - -import java.io.File; -import java.util.ArrayList; -import java.util.List; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -import akka.actor.ActorRef; -import akka.actor.ActorSystem; -import edu.lu.uni.serval.MultipleThreadsParser.MessageFile; -import edu.lu.uni.serval.MultipleThreadsParser.WorkMessage; -import edu.lu.uni.serval.config.Configuration; -import edu.lu.uni.serval.utils.FileHelper; - -/** - * Multi-thread parser of parsing source code of fixed violations. - * - * @author kui.liu - * - */ -public class AkkaParser2 { - - private static Logger log = LoggerFactory.getLogger(AkkaParser2.class); - - @SuppressWarnings("deprecation") - public static void main(String[] args) { - // input data - log.info("Get the input data..."); - final List msgFiles = getMessageFiles(Configuration.GUM_TREE_INPUT); - log.info("MessageFiles: " + msgFiles.size()); - - // output path - final String sourceCodeFilesPath = Configuration.ROOT_PATH + "fixedViolations/"; - FileHelper.deleteDirectory(sourceCodeFilesPath); - - ActorSystem system = null; - ActorRef parsingActor = null; - int numberOfWorkers = 431; - final WorkMessage msg = new WorkMessage(0, msgFiles); - try { - log.info("Akka begins..."); - system = ActorSystem.create("Mining-Pattern-System"); - parsingActor = system.actorOf(ParseFixPatternActor.props(numberOfWorkers, sourceCodeFilesPath, "Type"), "mine-pattern-actor"); - parsingActor.tell(msg, ActorRef.noSender()); - } catch (Exception e) { - system.shutdown(); - e.printStackTrace(); - } - } - - - /** - * Get violation-related files. - * - * @param gumTreeInput - * @return - */ - public static List getMessageFiles(String inputPath) { - File sourceCodeFilesPath = new File(inputPath + "prevFiles/"); - File[] sourceCodeFiles = sourceCodeFilesPath.listFiles(); - List msgFiles = new ArrayList<>(); - - for (File sourceCodeFile : sourceCodeFiles) { - if (sourceCodeFile.getName().endsWith(".java")) { - String fileName = sourceCodeFile.getName(); - fileName = fileName.substring(5).replace(".java", ".txt"); - File positionFile = new File(inputPath + "positions/" + fileName); // position file - MessageFile msgFile = new MessageFile(null, sourceCodeFile, null); - msgFile.setPositionFile(positionFile); - msgFiles.add(msgFile); - } - } - - return msgFiles; - } -} diff --git a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser3/ParseFixPatternActor.java b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser3/ParseFixPatternActor.java deleted file mode 100644 index 4c30d3a..0000000 --- a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser3/ParseFixPatternActor.java +++ /dev/null @@ -1,80 +0,0 @@ -package edu.lu.uni.serval.MultipleThreadsParser3; - -import java.util.ArrayList; -import java.util.List; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -import akka.actor.ActorRef; -import akka.actor.Props; -import akka.actor.UntypedActor; -import akka.japi.Creator; -import akka.routing.RoundRobinPool; -import edu.lu.uni.serval.MultipleThreadsParser.MessageFile; -import edu.lu.uni.serval.MultipleThreadsParser.WorkMessage; - -public class ParseFixPatternActor extends UntypedActor { - - private static Logger logger = LoggerFactory.getLogger(ParseFixPatternActor.class); - - private ActorRef mineRouter; - private final int numberOfWorkers; - private int counter = 0; - - public ParseFixPatternActor(int numberOfWorkers, String sourceCodeFilesPath, String vType) { - mineRouter = this.getContext().actorOf(new RoundRobinPool(numberOfWorkers) - .props(ParseFixPatternWorker.props(sourceCodeFilesPath)), "mine-pattern-router-" + vType); - this.numberOfWorkers = numberOfWorkers; - } - - public static Props props(final int numberOfWorkers, final String sourceCodeFilesPath, final String vType) { - - return Props.create(new Creator() { - - private static final long serialVersionUID = 9207427376110704705L; - - @Override - public ParseFixPatternActor create() throws Exception { - return new ParseFixPatternActor(numberOfWorkers, sourceCodeFilesPath, vType); - } - - }); - } - - @SuppressWarnings("deprecation") - @Override - public void onReceive(Object message) throws Exception { - if (message instanceof WorkMessage) { - List files = ((WorkMessage) message).getMsgFiles(); - int size = files.size(); - int average = size / numberOfWorkers; - - for (int i = 0; i < numberOfWorkers; i ++) { - int fromIndex = i * average; - int toIndex = (i + 1) * average; - if (i == numberOfWorkers - 1) { - toIndex = size; - } - - List filesOfWorkers = new ArrayList<>(); - filesOfWorkers.addAll(files.subList(fromIndex, toIndex)); - final WorkMessage workMsg = new WorkMessage(i + 1, filesOfWorkers); - mineRouter.tell(workMsg, getSelf()); - logger.info("Assign a task to worker #" + (i + 1) + "..."); - } - } else if ("STOP".equals(message.toString())) { - counter ++; - logger.info(counter + " workers finished their work..."); - if (counter >= numberOfWorkers) { - logger.info("All workers finished their work..."); - this.getContext().stop(mineRouter); - this.getContext().stop(getSelf()); - this.getContext().system().shutdown(); - } - } else { - unhandled(message); - } - } - -} diff --git a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser3/ParseFixPatternWorker.java b/src/main/java/edu/lu/uni/serval/MultipleThreadsParser3/ParseFixPatternWorker.java deleted file mode 100644 index 5137cd7..0000000 --- a/src/main/java/edu/lu/uni/serval/MultipleThreadsParser3/ParseFixPatternWorker.java +++ /dev/null @@ -1,122 +0,0 @@ -package edu.lu.uni.serval.MultipleThreadsParser3; - -import java.io.BufferedReader; -import java.io.File; -import java.io.IOException; -import java.io.StringReader; -import java.util.ArrayList; -import java.util.List; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -import akka.actor.Props; -import akka.actor.UntypedActor; -import akka.japi.Creator; -import edu.lu.uni.serval.MultipleThreadsParser.MessageFile; -import edu.lu.uni.serval.MultipleThreadsParser.WorkMessage; -import edu.lu.uni.serval.config.Configuration; -import edu.lu.uni.serval.utils.FileHelper; -import edu.lu.uni.serval.violation.code.parser.ViolationCodeParser; - -public class ParseFixPatternWorker extends UntypedActor { - private static Logger log = LoggerFactory.getLogger(ParseFixPatternActor.class); - - private String sourceCodeFilesPath; - - public ParseFixPatternWorker(String sourceCodeFilesPath) { - this.sourceCodeFilesPath = sourceCodeFilesPath; - } - - public static Props props(final String sourceCodeFilesPath) { - return Props.create(new Creator() { - - private static final long serialVersionUID = -7615153844097275009L; - - @Override - public ParseFixPatternWorker create() throws Exception { - return new ParseFixPatternWorker(sourceCodeFilesPath); - } - - }); - } - - @Override - public void onReceive(Object message) throws Exception { - if (message instanceof WorkMessage) { - WorkMessage msg = (WorkMessage) message; - List files = msg.getMsgFiles(); - StringBuilder sourceCode = new StringBuilder(); - StringBuilder sizes = new StringBuilder(); - StringBuilder tokens = new StringBuilder(); - - List violationTypes = readTypes(); - - int id = msg.getId(); - int counter = 0; - - for (MessageFile msgFile : files) { - File prevFile = msgFile.getPrevFile(); - File positionFile = msgFile.getPositionFile(); - if (prevFile.getName().toLowerCase().contains("test")) { - continue; - } - ViolationCodeParser parser = new ViolationCodeParser(); - parser.parse(prevFile, positionFile); - parser.setTypes(violationTypes); - - String sourceCodeStr = parser.sourceCode; - if ("".equals(sourceCodeStr)) { - } else { - sourceCode.append(sourceCodeStr); - sizes.append(parser.sizes); - tokens.append(parser.tokens); - - counter ++; - if (counter % 100 == 0) { - FileHelper.outputToFile(sourceCodeFilesPath + "SourceCode/worker_" + id + ".list", sourceCode, true); - FileHelper.outputToFile(sourceCodeFilesPath + "Sizes/worker_" + id + ".list", sizes, true); - FileHelper.outputToFile(sourceCodeFilesPath + "Tokens/worker_" + id + ".list", tokens, true); - sourceCode.setLength(0); - sizes.setLength(0); - tokens.setLength(0); - } - } - } - - if (sizes.length() > 0) { - FileHelper.outputToFile(sourceCodeFilesPath + "SourceCode/worker_" + id + ".list", sourceCode, true); - FileHelper.outputToFile(sourceCodeFilesPath + "Sizes/worker_" + id + ".list", sizes, true); - FileHelper.outputToFile(sourceCodeFilesPath + "Tokens/worker_" + id + ".list", tokens, true); - sourceCode.setLength(0); - sizes.setLength(0); - tokens.setLength(0); - } - - log.info("Worker #" + id +"Finish of parsing " + counter + " files..."); - log.info("Worker #" + id + " finished the work..."); - this.getSender().tell("STOP", getSelf()); - } else { - unhandled(message); - } - } - - private List readTypes() { - String fileName = Configuration.ROOT_PATH + "fixedViolations/types.list"; - String content = FileHelper.readFile(fileName); - List types = new ArrayList<>(); - BufferedReader reader = new BufferedReader(new StringReader(content)); - try { - String line = null; - while ((line = reader.readLine()) != null) { - types.add(line); - } - reader.close(); - } catch (IOException e) { - e.printStackTrace(); - } -// System.err.println(types.size()); - return types; - } - -} diff --git a/src/main/java/edu/lu/uni/serval/TreeToString.java b/src/main/java/edu/lu/uni/serval/TreeToString.java deleted file mode 100644 index e234b69..0000000 --- a/src/main/java/edu/lu/uni/serval/TreeToString.java +++ /dev/null @@ -1,47 +0,0 @@ -package edu.lu.uni.serval; - -import java.util.ArrayList; -import java.util.List; - -import com.github.gumtreediff.tree.ITree; - -import edu.lu.uni.serval.FixPattern.utils.ASTNodeMap; - -public class TreeToString { - - private List strList = new ArrayList<>(); - - public String toString(ITree tree) { - List children = tree.getChildren(); - String str = ASTNodeMap.map.get(tree.getType()); - if (strList.size() == 0) { - strList.add(str); - for (ITree child : children) { - TreeToString t2s = new TreeToString(); - t2s.toString(child); - List strList1 = t2s.strList; - for (String str1 : strList1) { - strList.add("---" + str1); - } - } - } else { - strList.clear(); - strList.add(str); - for (ITree child : children) { - TreeToString t2s = new TreeToString(); - t2s.toString(child); - List strList1 = t2s.strList; - for (String str1 : strList1) { - strList.add("---" + str1); - } - } - } - - str = ""; - for (String str1 : strList) { - str += str1 + "\n"; - } - - return str; - } -} diff --git a/src/main/java/edu/lu/uni/serval/config/Configuration.java b/src/main/java/edu/lu/uni/serval/config/Configuration.java index 3325840..4421c72 100644 --- a/src/main/java/edu/lu/uni/serval/config/Configuration.java +++ b/src/main/java/edu/lu/uni/serval/config/Configuration.java @@ -4,88 +4,4 @@ public class Configuration { public static final long SECONDS_TO_WAIT = 900L; -// public static String ROOT_PATH = "/Volumes/data/bugStudy/dataset/"; // The root path of all output data. - public static String ROOT_PATH = "/Users/anilkoyuncu/bugStudy/dataset/"; // The root path of all output data. - - public static int HUNK_SIZE = 10; // The limitation of source code lines of each DiffEntry, which will be selected as training data. - public static final String BUGGY_TREE_SIGNAL = "BUGGY_TREE###"; // The starting signal of the tree of buggy source code . - public static final String PATCH_SIGNAL = "PATCH###"; // Th starting signal of each patch. - - // input path of GumTree. (i.e., Fix patterns parser) - public static final String GUM_TREE_INPUT = ROOT_PATH + "GumTreeInput/";// Buggy version file VS. Fixing version file, (DiffEntry File) - - - // the output path of GumTree results. - public static final String GUM_TREE_OUTPUT = ROOT_PATH + "GumTreeResults/"; - public static final String EDITSCRIPTS_FILE_PATH = GUM_TREE_OUTPUT + "editScripts/"; - public static final String PATCH_SOURCECODE_FILE_PATH = GUM_TREE_OUTPUT + "sourceCode/"; - public static final String BUGGYTREE_FILE_PATH = GUM_TREE_OUTPUT + "buggyTrees/"; - public static final String BUGGY_CODE_TOKEN_FILE_PATH = GUM_TREE_OUTPUT + "tokens/"; - public static final String EDITSCRIPT_SIZES_FILE_PATH = GUM_TREE_OUTPUT + "editScriptSizes/"; - public static final String ALARM_TYPES_FILE_PATH = GUM_TREE_OUTPUT + "alarmTypes/"; - - public static final String EDITSCRIPTS_FILE = GUM_TREE_OUTPUT + "editScripts.list"; - public static final String PATCH_SOURCECODE_FILE = GUM_TREE_OUTPUT + "patchSourceCode.list"; - public static final String BUGGYTREES_FILE = GUM_TREE_OUTPUT + "buggyTrees.list"; - public static final String BUGGY_CODE_TOKENS_FILE = GUM_TREE_OUTPUT + "tokens.list"; - public static final String EDITSCRIPT_SIZES_FILE = GUM_TREE_OUTPUT + "editScriptSizes.csv"; - public static final String ALARM_TYPES_FILE = GUM_TREE_OUTPUT + "alarmTypes.list"; - - public static final int VECTOR_SIZE_OF_EMBEDED_TOKEN1 = 100; // tokens of edit scripts. - public static final int VECTOR_SIZE_OF_EMBEDED_TOKEN2 = 200; // tokens of source code - - // the input path of fix patterns mining. - private static final String MINING_INPUT = ROOT_PATH + "MiningInput/"; - public static final String MAX_TOKEN_VECTORS_SIZE_OF_EDIT_SCRIPTS = MINING_INPUT + "/MaxTokenVectorSizeOfEditScripts.list"; // The max size of edit scripts: upper limitation of max size. - public static final String MAX_TOKEN_VECTORS_SIZE_OF_SOURCE_CODE = MINING_INPUT + "/MaxTokenVectorSizeOfBuggySourceCode.list"; // The max size of all buggy source code token vectors. - // the input path of token embedding. - public static final String EMBEDDING_INPUT = MINING_INPUT + "Embedding/"; - public static final String SELECTED_PATCHES_SOURE_CODE_FILE = EMBEDDING_INPUT + "patchSourceCode.list";// Selected patches. - public static final String SELECTED_BUGGY_TREE_FILE = EMBEDDING_INPUT + "buggyTrees.list"; - public static final String SELECTED_BUGGY_TOKEN_FILE = EMBEDDING_INPUT + "tokens.list"; // Selected token vectors of buggy source code. - public static final String SELECTED_EDITSCRIPTES_FILE = EMBEDDING_INPUT + "editScripts.list"; // Selected edit script vectors. - public static final String SELECTED_ALARM_TYPES_FILE = EMBEDDING_INPUT + "alarmTypes.list"; // Selected edit script vectors. - // the input path of feature learning. - public static final String FEATURE_LEARNING_INPUT = MINING_INPUT + "FeatureLearning/"; - public static final String EMBEDDED_EDIT_SCRIPT_TOKENS = FEATURE_LEARNING_INPUT + "embeddedEditScriptTokens.list"; // All embedded tokens of selected edit scripts. - public static final String VECTORIED_EDIT_SCRIPTS = FEATURE_LEARNING_INPUT + "vectorizedEditScripts.csv"; // Embedded and vectorized edit script vectors. - // the input path of clustering. - public static final String EXTRACTED_FEATURES = MINING_INPUT + "ExtractedFeatures/"; // Extracted features of all edit scripts. - public static final String CLUSTER_INPUT = MINING_INPUT + "ClusteringInput/input.arff"; - - // the output path of fix patterns mining. - private static final String MINING_OUTPUT = ROOT_PATH + "MiningOutput/"; - public static final String CLUSTER_OUTPUT = MINING_OUTPUT + "ClusteringOutput/clusterResults.list"; - public static final String CLUSTERED_PATCHES_FILE = MINING_OUTPUT + "ClusteredPatches/"; - public static final String CLUSTERED_TOKENSS_FILE = MINING_OUTPUT + "ClusteredTokens/"; // Token vectors of buggy source code. - public static final String COMMON_CLUSTERS_SIZES = MINING_OUTPUT + "ClusteringOutput/CommonClusterSizes.list"; - - // evaluation data - public static final String TEST_INPUT = ROOT_PATH + "TestProjects/"; - public static final String TEST_POSITION_FILE = ROOT_PATH + "TestData/Positions/"; // Positions of all test statements. - public static final String TEST_DATA_FILE = ROOT_PATH + "TestData/TestStatements/"; // Token vectors of all test statements. - - public static final String NUMBER_OF_TRAINING_DATA = ROOT_PATH + "TestData/NumberOfTrainingData.list";; - - // data of unsupervised learning - public static final String EMBEDDING_DATA_TOKENS1 = ROOT_PATH + "TestData/AllTokenVectorsForEvaluation.list"; - public static final String EMBEDDED_ALL_TOKENS1 = ROOT_PATH + "TestData/AllEmbeddedTokens.list"; - public static final String VECTORIED_ALL_SOURCE_CODE1 = ROOT_PATH + "TestData/AllVectorizedSourceCode/"; - public static final String EXTRACTED_FEATURES_EVALUATION = ROOT_PATH + "TestDataExtractedFeatures/"; // extracted features of all source code (training data and testing data) - - // Data of supervised learning - public static final String CLUSTERNUMBER_LABEL_MAP = ROOT_PATH + "TestData/clusterMappingLabel.list"; - public static final String EMBEDDING_DATA_TOKENS2 = ROOT_PATH + "TestData/AllTokenVectorsForSupervisedEvaluation.list"; - public static final String EMBEDDED_ALL_TOKENS2 = ROOT_PATH + "TestData/AllEmbeddedTokensForSuperVisedEvaluation.list"; - public static final String TRAINING_DATA = ROOT_PATH + "TestData/TrainingData.csv"; // Training data of supervised learning - public static final String TESTING_DATA = ROOT_PATH + "TestData/SupervisedLearning/"; // testing data of supervised learning - public static final String FEATURES_OF_TRAINING_DATA = ROOT_PATH + "TestingOutput/TraingFeatures/"; - public static final String FEATURES_OF_TESTING_DATA = ROOT_PATH + "TestingOutput/TestingFeatures/"; - public static final String POSSIBILITIES_OF_TESTING_DATA = ROOT_PATH + "TestingOutput/Posibilities/"; - public static final String PREDICTED_RESULTS_OF_TESTING_DATA = ROOT_PATH + "TestingOutput/Prediction/"; - - public static final String SUPERVISED_LEARNING_MODEL = ROOT_PATH + "TestingOutput/SupervisedLearningModel.zip"; - - public static final String FEATURES_OF_COMMON_CLUSTERS = ROOT_PATH + "FeaturesOfCommonClusters/"; - } diff --git a/src/main/java/edu/lu/uni/serval/defects4j/Bug.java b/src/main/java/edu/lu/uni/serval/defects4j/Bug.java deleted file mode 100644 index e169ddd..0000000 --- a/src/main/java/edu/lu/uni/serval/defects4j/Bug.java +++ /dev/null @@ -1,43 +0,0 @@ -package edu.lu.uni.serval.defects4j; - -public class Bug { - private String project; - - private String fileName; - - private int startLine; - - private int endLine; - - private String type; - - public Bug(String project, String fileName, int startLine, int endLine, String type) { - super(); - this.project = project; - this.fileName = fileName; - this.startLine = startLine; - this.endLine = endLine; - this.type = type; - } - - public String getProject() { - return project; - } - - public String getFileName() { - return fileName; - } - - public int getStartLine() { - return startLine; - } - - public int getEndLine() { - return endLine; - } - - public String getType() { - return type; - } - -} diff --git a/src/main/java/edu/lu/uni/serval/defects4j/BugParser.java b/src/main/java/edu/lu/uni/serval/defects4j/BugParser.java deleted file mode 100644 index 8a30ee0..0000000 --- a/src/main/java/edu/lu/uni/serval/defects4j/BugParser.java +++ /dev/null @@ -1,206 +0,0 @@ -package edu.lu.uni.serval.defects4j; - -import java.io.BufferedReader; -import java.io.File; -import java.io.FileInputStream; -import java.io.FileNotFoundException; -import java.io.IOException; -import java.io.StringReader; -import java.util.ArrayList; -import java.util.List; -import java.util.Scanner; - -import com.github.gumtreediff.tree.ITree; - -import edu.lu.uni.serval.FixPatternParser.Tokenizer; -import edu.lu.uni.serval.config.Configuration; -import edu.lu.uni.serval.gumtree.regroup.SimpleTree; -import edu.lu.uni.serval.gumtree.regroup.SimplifyTree; -import edu.lu.uni.serval.utils.FileHelper; -import edu.lu.uni.serval.violation.code.parser.ViolationSourceCodeTree; - -public class BugParser { - - public static void main(String[] args) throws IOException { - List bugs = new ArrayList<>(); - String bugsFile = "Dataset/Defects4j/Bugs.txt"; - String content = FileHelper.readFile(bugsFile); - BufferedReader reader = new BufferedReader(new StringReader(content)); - String line = null; - - StringBuilder tokensBuilder = new StringBuilder(); - StringBuilder buggyCodeBuilder = new StringBuilder(); - while ((line = reader.readLine()) != null) { - String[] elements = line.split(" : "); - String type = elements[0]; - String project = elements[1]; - project = project.substring(0, project.lastIndexOf(".")); - String fileName = elements[2]; - int startLine = Integer.parseInt(elements[3]); - int endLine = Integer.parseInt(elements[4]); - - Bug bug = new Bug(project, fileName, startLine, endLine, type); - bugs.add(bug); - } - int i = 0; - for (Bug bug : bugs) { - String type = bug.getType(); - String project = bug.getProject(); - String fileName = bug.getFileName(); - int startLine = bug.getStartLine(); - int endLine = bug.getEndLine(); - File buggyFile = null; - - String[] elements = project.split("_"); - if (elements.length < 2) System.out.println(type + "-" + project + "-" + fileName + "-" + startLine + "-" + endLine); - List javaFiles = FileHelper.getAllFiles(Configuration.ROOT_PATH + "Testing/projects1/" + elements[0] + "/" + elements[1] + "-b", ".java"); - for (File javaFile : javaFiles) { - if (javaFile.getPath().endsWith(fileName)) { - buggyFile = javaFile; - break; - } - } - if (i == 31) { - i = i + 1 - 1; - } - SimpleTree simpleTree = null; - if ("EQ_DOESNT_OVERRIDE_EQUALS".equals(type)|| "HE_EQUALS_USE_HASHCODE".equals(type) || "HE_INHERITS_EQUALS_USE_HASHCODE".equals(type)|| - "SE_NO_SUITABLE_CONSTRUCTOR".equals(type) || "RI_REDUNDANT_INTERFACES".equals(type) -// ||"CN_IDIOM_NO_SUPER_CALL".equals(type) - ||"SE_NO_SERIALVERSIONID".equals(type) || "SE_COMPARATOR_SHOULD_BE_SERIALIZABLE".equals(type)) { - ViolationSourceCodeTree parser = new ViolationSourceCodeTree(buggyFile, startLine, endLine); - ITree classNameTree = parser.getClassNameTokens(); - simpleTree = new SimplifyTree().canonicalizeSourceCodeTree(classNameTree, null); - - startLine = parser.getViolationFinalStartLine(); - endLine = parser.getViolationFinalEndLine(); - } else { - ViolationSourceCodeTree alarmTree = new ViolationSourceCodeTree(buggyFile, startLine, endLine); - alarmTree.extract(); - List matchedTrees = alarmTree.getViolationSourceCodeTrees(); - if (matchedTrees.size() == 0) { - System.err.println("#Null_Violation_Hunk: " + buggyFile.getName() + ":" + startLine + ":" + endLine); - continue; - } - simpleTree = new SimpleTree(); - simpleTree.setLabel("Block"); - simpleTree.setNodeType("Block"); - List children = new ArrayList<>(); - - for (ITree matchedTree : matchedTrees) { - SimpleTree simpleT = new SimplifyTree().canonicalizeSourceCodeTree(matchedTree, null); - children.add(simpleT); - } - simpleTree.setChildren(children); - - startLine = alarmTree.getViolationFinalStartLine(); - endLine = alarmTree.getViolationFinalEndLine(); - } - - String tokens = Tokenizer.getTokensDeepFirst(simpleTree); - String[] tokensArray = tokens.split(" "); - int length = tokensArray.length; - System.out.println((++ i) + "==" + length); -// sizes += length + "\n"; -// this.tokens += tokens + "\n"; - String sourceCode = readSourceCode(buggyFile, startLine, endLine, type); -// this.sourceCode += sourceCode + "\n"; -// tokensBuilder.append(type).append(":").append(tokens).append("\n"); - tokensBuilder.append(tokens).append("\n"); - buggyCodeBuilder.append(sourceCode).append("\n"); - } - - FileHelper.outputToFile("Dataset/Defects4j/buggyTokens.list", tokensBuilder, false); - FileHelper.outputToFile("Dataset/Defects4j/buggySourceCode.list", buggyCodeBuilder, false); - } - - private static String readSourceCode(File javaFile, int startLine, int endLine, String violationType) { - StringBuilder sourceCode = new StringBuilder("##Source_Code:\n"); - sourceCode.append(violationType).append("\n"); - sourceCode.append(javaFile.getName().replaceAll("#", "/")).append("\nPosition: ").append(startLine).append(" : ").append(endLine).append("\n"); - FileInputStream fis = null; - Scanner scanner = null; - - try { - fis = new FileInputStream(javaFile); - scanner = new Scanner(fis); - int counter = 0; - while (scanner.hasNextLine()) { - String line = scanner.nextLine(); - counter ++; - if (startLine <= counter && counter <= endLine) { - sourceCode.append(line + "\n"); - } - if (counter == endLine) break; - } - } catch (FileNotFoundException e) { - e.printStackTrace(); - } finally { - try { - scanner.close(); - fis.close(); - } catch (IOException e) { - e.printStackTrace(); - } - } - - return sourceCode.toString(); - } -} - - - -/* -20 -32 -20 -8 -8 -16 -22 -10 -10 -10 -12 -16 -18 -10 -12 -8 -14 -44 -8 -26 -20 -10 -12 -12 -10 -4 -10 -8 -8 -12 -16 -1776 -8 -10 -10 -12 -8 -50 -18 -8 -12 -38 -4 -4 -14 -16 -20 -26 -8 -14 -12 -14 -*/ \ No newline at end of file diff --git a/src/main/java/edu/lu/uni/serval/diffentry/DiffEntryHunk.java b/src/main/java/edu/lu/uni/serval/diffentry/DiffEntryHunk.java deleted file mode 100644 index ece32e5..0000000 --- a/src/main/java/edu/lu/uni/serval/diffentry/DiffEntryHunk.java +++ /dev/null @@ -1,85 +0,0 @@ -package edu.lu.uni.serval.diffentry; - -import java.util.ArrayList; -import java.util.List; - -import edu.lu.uni.serval.gumtree.regroup.HierarchicalActionSet; - -public class DiffEntryHunk { - - private int bugLineStartNum; - private int fixLineStartNum; - private int bugRange; - private int fixRange; - private String hunk; - private int buggyHunkSize; - private int fixedHunkSize; - private String file; - private List actionSets = new ArrayList<>(); - - public DiffEntryHunk(int bugLineStartNum, int fixLineStartNum, int bugRange, int fixRange) { - super(); - this.bugLineStartNum = bugLineStartNum; - this.fixLineStartNum = fixLineStartNum; - this.bugRange = bugRange; - this.fixRange = fixRange; - } - - public int getBugLineStartNum() { - return bugLineStartNum; - } - - public int getFixLineStartNum() { - return fixLineStartNum; - } - - public int getBugRange() { - return bugRange; - } - - public int getFixRange() { - return fixRange; - } - - public String getHunk() { - return hunk; - } - - public void setHunk(String hunk) { - this.hunk = hunk; - } - - public int getBuggyHunkSize() { - return buggyHunkSize; - } - - public void setBuggyHunkSize(int buggyHunkSize) { - this.buggyHunkSize = buggyHunkSize; - } - - public int getFixedHunkSize() { - return fixedHunkSize; - } - - public void setFixedHunkSize(int fixedHunkSize) { - this.fixedHunkSize = fixedHunkSize; - } - - public String getFile() { - return file; - } - - public void setFile(String file) { - this.file = file; - } - - public List getActionSets() { - return actionSets; - } - - @Override - public String toString() { - return "@@ -" + this.bugLineStartNum + ", " + this.bugRange + " +" + this.fixLineStartNum + ", " + this.fixRange + "\n" + this.hunk; - } - -} diff --git a/src/main/java/edu/lu/uni/serval/diffentry/DiffEntryReader.java b/src/main/java/edu/lu/uni/serval/diffentry/DiffEntryReader.java deleted file mode 100644 index 0e4806b..0000000 --- a/src/main/java/edu/lu/uni/serval/diffentry/DiffEntryReader.java +++ /dev/null @@ -1,250 +0,0 @@ -package edu.lu.uni.serval.diffentry; - -import java.io.BufferedReader; -import java.io.File; -import java.io.IOException; -import java.io.StringReader; -import java.util.ArrayList; -import java.util.List; -import java.util.regex.Pattern; - -import edu.lu.uni.serval.utils.FileHelper; - -public class DiffEntryReader { - - public List readHunks(File diffentryFile) { - List diffentryHunks = new ArrayList<>(); - String content = FileHelper.readFile(diffentryFile); - BufferedReader reader = null; - try { - reader = new BufferedReader(new StringReader(content)); - String line = null; - int startLine = 0; - int range = 0; - int startLine2 = 0; - int range2 = 0; - StringBuilder hunk = new StringBuilder(); - boolean sourceCode = false; - - while ((line = reader.readLine()) != null) { - if (RegExp.filterSignal(line.trim())) { - sourceCode = true; - if (hunk.length() > 0) { - if ((range < 7 && range2 < 7) || range == 0 || range2 == 0) { // filter out big hunks - DiffEntryHunk diffEntryHunk = new DiffEntryHunk(startLine, startLine2, range, range2); - diffEntryHunk.setHunk(hunk.toString()); - diffentryHunks.add(diffEntryHunk); - } - hunk.setLength(0); - } - int plusIndex = line.indexOf("+"); - String lineNum = line.substring(4, plusIndex); - String[] nums = lineNum.split(","); - startLine = Integer.parseInt(nums[0].trim()); - if (nums.length == 2) { - range = Integer.parseInt(nums[1].trim()); - } - - String lineNum2 = line.substring(plusIndex) .trim(); - lineNum2 = lineNum2.substring(1, lineNum2.length() - 2); - String[] nums2 = lineNum2.split(","); - startLine2 = Integer.parseInt(nums2[0].trim()); - if (nums2.length == 2) { - range2 = Integer.parseInt(nums2[1].trim()); - } - continue; - } - if (sourceCode) hunk.append(line + "\n"); - } - - if ((range < 7 && range2 < 7) || range == 0 || range2 == 0) { // filter out big hunks - DiffEntryHunk diffEntryHunk = new DiffEntryHunk(startLine, startLine2, range, range2); - diffEntryHunk.setHunk(hunk.toString()); - diffentryHunks.add(diffEntryHunk); - } - hunk.setLength(0); - - } catch (IOException e) { - e.printStackTrace(); - } finally { - try { - if (reader != null) { - reader.close(); - reader = null; - } - } catch (IOException e) { - e.printStackTrace(); - } - } - - return diffentryHunks; - } - - /** - * Read all hunks without considering their sizes. - * - * @param diffentryFile - * @return - */ - public List readHunks2(File diffentryFile) { - List diffentryHunks = new ArrayList<>(); - String content = FileHelper.readFile(diffentryFile); - BufferedReader reader = null; - try { - reader = new BufferedReader(new StringReader(content)); - String line = null; - int startLine = 0; - int range = 0; - int startLine2 = 0; - int range2 = 0; - StringBuilder hunk = new StringBuilder(); - boolean sourceCode = false; - - while ((line = reader.readLine()) != null) { - if (RegExp.filterSignal(line.trim())) { -// line = Pattern.compile("^@@\\s\\-\\d+,*\\d*\\s\\+\\d+,*\\d*\\s@@").split(line)[1]; - sourceCode = true; - if (hunk.length() > 0) { - if (startLine > 0) { - DiffEntryHunk diffEntryHunk = new DiffEntryHunk(startLine, startLine2, range, range2); - diffEntryHunk.setHunk(hunk.toString()); - diffentryHunks.add(diffEntryHunk); - } - hunk.setLength(0); - } - int plusIndex = line.indexOf("+"); - String lineNum = line.substring(4, plusIndex); - String[] nums = lineNum.split(","); - startLine = Integer.parseInt(nums[0].trim()); - if (nums.length == 2) { - range = Integer.parseInt(nums[1].trim()); - } - - String lineNum2 = line.substring(plusIndex) .trim(); - lineNum2 = lineNum2.substring(1, lineNum2.length() - 2); - String[] nums2 = lineNum2.split(","); - startLine2 = Integer.parseInt(nums2[0].trim()); - if (nums2.length == 2) { - range2 = Integer.parseInt(nums2[1].trim()); - } - continue; - } - if (sourceCode) hunk.append(line + "\n"); - } - - if (startLine > 0) { - DiffEntryHunk diffEntryHunk = new DiffEntryHunk(startLine, startLine2, range, range2); - diffEntryHunk.setHunk(hunk.toString()); - diffentryHunks.add(diffEntryHunk); - } - hunk.setLength(0); - - } catch (IOException e) { - e.printStackTrace(); - } finally { - try { - if (reader != null) { - reader.close(); - reader = null; - } - } catch (IOException e) { - e.printStackTrace(); - } - } - - return diffentryHunks; - } - - /** - * Read all hunks with pure deleted lines and added lines. - * - * @param diffentryFile - * @return - */ - public List readHunks3(File diffentryFile) { - List diffentryHunks = new ArrayList<>(); - String content = FileHelper.readFile(diffentryFile); - BufferedReader reader = null; - try { - reader = new BufferedReader(new StringReader(content)); - String line = null; - int buggyStartLine = 0; - int buggyRange = 0; - int fixedStartLine = 0; - int fixedRange = 0; - int buggyHunkSize = 0; - int fixedHunkSize = 0; - StringBuilder hunk = new StringBuilder(); - boolean sourceCode = false; - - while ((line = reader.readLine()) != null) { - if (RegExp.filterSignal(line.trim())) { - sourceCode = true; - if (hunk.length() > 0) { - if (buggyStartLine > 0) { - DiffEntryHunk diffEntryHunk = new DiffEntryHunk(buggyStartLine, fixedStartLine, buggyRange, fixedRange); - diffEntryHunk.setHunk(hunk.toString()); - diffEntryHunk.setBuggyHunkSize(buggyHunkSize); - diffEntryHunk.setFixedHunkSize(fixedHunkSize); - diffEntryHunk.setFile(diffentryFile.getPath()); - diffentryHunks.add(diffEntryHunk); - } - hunk.setLength(0); - buggyStartLine = 0; - buggyRange = 0; - fixedStartLine = 0; - fixedRange = 0; - buggyHunkSize = 0; - fixedHunkSize = 0; - } - int plusIndex = line.indexOf("+"); - String lineNum = line.substring(4, plusIndex); - String[] nums = lineNum.split(","); - buggyStartLine = Integer.parseInt(nums[0].trim()); - if (nums.length == 2) { - buggyRange = Integer.parseInt(nums[1].trim()); - } - - String lineNum2 = line.substring(plusIndex) .trim(); - lineNum2 = lineNum2.substring(1, lineNum2.length() - 2); - String[] nums2 = lineNum2.split(","); - fixedStartLine = Integer.parseInt(nums2[0].trim()); - if (nums2.length == 2) { - fixedRange = Integer.parseInt(nums2[1].trim()); - } - continue; - } else if (sourceCode) { - if (line.startsWith("-")) { - buggyHunkSize ++; - } else if (line.startsWith("+")) { - fixedHunkSize ++; - } - hunk.append(line + "\n"); - } - } - - if (buggyStartLine > 0 && hunk.length() > 0) { - DiffEntryHunk diffEntryHunk = new DiffEntryHunk(buggyStartLine, fixedStartLine, buggyRange, fixedRange); - diffEntryHunk.setHunk(hunk.toString()); - diffEntryHunk.setBuggyHunkSize(buggyHunkSize); - diffEntryHunk.setFixedHunkSize(fixedHunkSize); - diffEntryHunk.setFile(diffentryFile.getPath()); - diffentryHunks.add(diffEntryHunk); - hunk.setLength(0); - } - } catch (IOException e) { - e.printStackTrace(); - } finally { - try { - if (reader != null) { - reader.close(); - reader = null; - } - } catch (IOException e) { - e.printStackTrace(); - } - } - - return diffentryHunks; - } -} diff --git a/src/main/java/edu/lu/uni/serval/diffentry/RegExp.java b/src/main/java/edu/lu/uni/serval/diffentry/RegExp.java deleted file mode 100644 index b1d017d..0000000 --- a/src/main/java/edu/lu/uni/serval/diffentry/RegExp.java +++ /dev/null @@ -1,20 +0,0 @@ -package edu.lu.uni.serval.diffentry; - -import java.util.regex.Matcher; -import java.util.regex.Pattern; - -public class RegExp { - private static final String REGULAR_EXPRESSION = "^@@\\s\\-\\d+,*\\d*\\s\\+\\d+,*\\d*\\s@@$"; //@@ -21,0 +22,2 @@ - private static Pattern pattern = Pattern.compile(REGULAR_EXPRESSION); - - public static boolean filterSignal(String string) { - boolean flag = false; - - Matcher res = pattern.matcher(string); - if (res.matches()) { - flag = true; - } - - return flag; - } -} diff --git a/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/TestHunkParser.java b/src/main/java/edu/lu/uni/serval/fixminer/EnhancedASTDiff.java similarity index 59% rename from src/main/java/edu/lu/uni/serval/FixPatternParser/violations/TestHunkParser.java rename to src/main/java/edu/lu/uni/serval/fixminer/EnhancedASTDiff.java index 3d8916e..43895e0 100644 --- a/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/TestHunkParser.java +++ b/src/main/java/edu/lu/uni/serval/fixminer/EnhancedASTDiff.java @@ -1,4 +1,4 @@ -package edu.lu.uni.serval.FixPatternParser.violations; +package edu.lu.uni.serval.fixminer; import akka.actor.ActorRef; import akka.actor.ActorSystem; @@ -16,10 +16,10 @@ import java.util.List; import java.util.stream.Collectors; import java.util.stream.Stream; -public class TestHunkParser { +public class EnhancedASTDiff { + + private static Logger log = LoggerFactory.getLogger(EnhancedASTDiff.class); - private static Logger log = LoggerFactory.getLogger(TestHunkParser.class); -// public static void main(String[] args) { public static void main(String inputPath, String outputPath,String numOfWorkers,String project) { @@ -44,29 +44,13 @@ public class TestHunkParser { continue; String GUM_TREE_OUTPUT = outputPath + "/"+ pjName + "/"; -// final String editScriptsFilePath = GUM_TREE_OUTPUT + "editScripts.list"; -// final String patchesSourceCodeFilePath =GUM_TREE_OUTPUT + "patchSourceCode.list"; -// final String buggyTokensFilePath = GUM_TREE_OUTPUT + "tokens.list"; -// final String editScriptSizesFilePath = GUM_TREE_OUTPUT + "editScriptSizes.csv"; -// final String alarmTypesFilePath = GUM_TREE_OUTPUT + "alarmTypes.list"; - FileHelper.createDirectory(GUM_TREE_OUTPUT + "/UPD"); FileHelper.createDirectory(GUM_TREE_OUTPUT + "/INS"); FileHelper.createDirectory(GUM_TREE_OUTPUT + "/DEL"); FileHelper.createDirectory(GUM_TREE_OUTPUT + "/MOV"); FileHelper.createDirectory(GUM_TREE_OUTPUT + "/ALL"); -// FileHelper.deleteDirectory(editScriptsFilePath); -// FileHelper.deleteDirectory(patchesSourceCodeFilePath); -// FileHelper.deleteDirectory(buggyTokensFilePath); -// FileHelper.deleteDirectory(editScriptSizesFilePath); -// FileHelper.deleteDirectory(alarmTypesFilePath); -// StringBuilder astEditScripts = new StringBuilder(); -// StringBuilder tokens = new StringBuilder(); -// StringBuilder sizes = new StringBuilder(); -// StringBuilder patches = new StringBuilder(); -// StringBuilder alarmTypes = new StringBuilder(); int a = 0; @@ -76,7 +60,7 @@ public class TestHunkParser { try { log.info("Akka begins..."); system = ActorSystem.create("Mining-FixPattern-System"); - System.out.println(system.settings()); + parsingActor = system.actorOf(ParseFixPatternActor.props(Integer.valueOf(numOfWorkers), project), "mine-fix-pattern-actor"); parsingActor.tell(msg, ActorRef.noSender()); } catch (Exception e) { @@ -84,20 +68,6 @@ public class TestHunkParser { e.printStackTrace(); } - -// FileHelper.outputToFile(editScriptsFilePath, astEditScripts, true); -// FileHelper.outputToFile(buggyTokensFilePath, tokens, true); -// FileHelper.outputToFile(editScriptSizesFilePath, sizes, true); -// FileHelper.outputToFile(patchesSourceCodeFilePath, patches, true); -// FileHelper.outputToFile(alarmTypesFilePath, alarmTypes, true); -// astEditScripts.setLength(0); -// tokens.setLength(0); -// sizes.setLength(0); -// patches.setLength(0); -// alarmTypes.setLength(0); -// System.out.println(a); - -// classifyByAlarmTypes(); } } @@ -109,16 +79,15 @@ public class TestHunkParser { List msgFiles = new ArrayList<>(); if (revFiles.length >= 0) { for (File revFile : revFiles) { -// if (revFile.getName().endsWith(".java")) { String fileName = revFile.getName(); File prevFile = new File(gumTreeInput + "prevFiles/prev_" + fileName);// previous file fileName = fileName.replace(".java", ".txt"); File diffentryFile = new File(gumTreeInput + "DiffEntries/" + fileName); // DiffEntry file -// File positionFile = new File(gumTreeInput + "positions/" + fileName); // position file + MessageFile msgFile = new MessageFile(revFile, prevFile, diffentryFile); -// msgFile.setPositionFile(positionFile); + msgFiles.add(msgFile); -// } + } return msgFiles; diff --git a/src/main/java/edu/lu/uni/serval/fixminer/Launcher.java b/src/main/java/edu/lu/uni/serval/fixminer/Launcher.java index 6848d2c..d4cf22b 100644 --- a/src/main/java/edu/lu/uni/serval/fixminer/Launcher.java +++ b/src/main/java/edu/lu/uni/serval/fixminer/Launcher.java @@ -1,6 +1,5 @@ package edu.lu.uni.serval.fixminer; -import edu.lu.uni.serval.FixPatternParser.violations.TestHunkParser; import edu.lu.uni.serval.fixminer.cluster.*; import org.slf4j.Logger; import org.slf4j.LoggerFactory; @@ -27,34 +26,34 @@ public class Launcher { appProps.load(new FileInputStream(appConfigPath)); String portInner = appProps.getProperty("portInner","6380"); - String serverWait = appProps.getProperty("serverWait", "50000"); +// String serverWait = appProps.getProperty("serverWait", "50000"); String numOfWorkers = appProps.getProperty("numOfWorkers", "10"); String jobType = appProps.getProperty("jobType","ALL"); String portDumps = appProps.getProperty("portDumps","6399"); String pythonPath = appProps.getProperty("pythonPath","/Users/anilkoyuncu/bugStudy/code/python"); String datasetPath = appProps.getProperty("datasetPath","/Users/anilkoyuncu/bugStudy/dataset"); String pjName = appProps.getProperty("pjName","allDataset"); - String dbNo = appProps.getProperty("dbNo","0"); +// String dbNo = appProps.getProperty("dbNo","0"); String actionType = appProps.getProperty("actionType","ALL"); String threshold = appProps.getProperty("threshold","1"); String cursor = appProps.getProperty("cursor","10000000"); String chunk = appProps.getProperty("chunk","1.txt"); String parameters = String.format("\nportInner %s " + - "\nserverWait %s \nnumOfWorkers %s " + + "\nnumOfWorkers %s " + "\njobType %s \nport %s " + "\npythonPath %s \ndatasetPath %s" + - "\npjName %s \ndbNo %s \nactionType %s \nthreshold %s \ncursor %s" - , portInner, serverWait, numOfWorkers, jobType, portDumps, pythonPath,datasetPath,pjName,dbNo,actionType,threshold,cursor); + "\npjName %s \nactionType %s \nthreshold %s \ncursor %s" + , portInner, numOfWorkers, jobType, portDumps, pythonPath,datasetPath,pjName,actionType,threshold,cursor); log.info(parameters); - mainLaunch(portInner, serverWait, numOfWorkers, jobType, portDumps, pythonPath,datasetPath,pjName,dbNo,actionType,threshold,cursor,chunk); + mainLaunch(portInner, numOfWorkers, jobType, portDumps, pythonPath,datasetPath,pjName,actionType,threshold,cursor,chunk); } - public static void mainLaunch(String portInner, String serverWait, String numOfWorkers, String jobType, String portDumps, String pythonPath, String datasetPath, String pjName, String dbNo, String actionType, String threshold, String cursor, String chunk){ + public static void mainLaunch(String portInner, String numOfWorkers, String jobType, String portDumps, String pythonPath, String datasetPath, String pjName, String actionType, String threshold, String cursor, String chunk){ String dbDir; @@ -72,43 +71,35 @@ public class Launcher { try { switch (jobType) { case "ENHANCEDASTDIFF": - TestHunkParser.main(gumInput, gumOutput, numOfWorkers, pjName); + EnhancedASTDiff.main(gumInput, gumOutput, numOfWorkers, pjName); break; case "CACHE": - StoreFile.main(gumOutput, portDumps, serverWait, dbDir, actionType+dumpsName,actionType); + StoreEDiffInCache.main(gumOutput, portDumps, dbDir, actionType+dumpsName,actionType); break; - case "COMP": - CalculatePairs.main(serverWait, dbDir, actionType+dumpsName, portDumps, pairsPath+actionType, pjName+actionType); - - ImportPairs2DB.main(pairsPath+actionType, portInner, serverWait, dbDir,datasetPath); + case "SI": + CalculatePairs.main(dbDir, actionType+dumpsName, portDumps, pairsPath+actionType, pjName+actionType); + ImportPairs2DB.main(pairsPath+actionType, portInner, dbDir,datasetPath); break; - case "AKKA": - AkkaTreeLoader.main(portInner, serverWait, dbDir, pjName +actionType+chunk+".rdb" , portDumps, actionType+dumpsName,pairsPath+actionType,numOfWorkers,cursor); + case "SIMI": + AkkaTreeLoader.main(portInner, dbDir, pjName +actionType+chunk+".rdb" , portDumps, actionType+dumpsName,pairsPath+actionType,numOfWorkers,cursor,chunk); break; case "LEVEL1": - level1(portInner, serverWait, portDumps, pythonPath, datasetPath, pjName, actionType, threshold, dbDir, pairsPath, dumpsName, gumInput); + level1(portInner, portDumps, pythonPath, datasetPath, pjName, actionType, threshold, dbDir, pairsPath, dumpsName, gumInput); break; //CALC python abstractPatch.py to from cluster folder case "LEVEL2": - level2(serverWait, portDumps, pythonPath, datasetPath, pjName, actionType, threshold, dbDir, dumpsName, gumInput); + level2(portDumps, pythonPath, datasetPath, pjName, actionType, threshold, dbDir, dumpsName, gumInput); break; //CALC via python case "LEVEL3": - level3(serverWait, portDumps, pythonPath, datasetPath, pjName, actionType, threshold, dbDir, dumpsName, gumInput); - break; - case "ALL": -// TestHunkParser.main(gumInput, gumOutput, numOfWorkers, pjName); -// StoreFile.main(gumOutput, portInner, serverWait, dbDir, actionType+dumpsName,actionType); -// level1(portInner, serverWait, port, pythonPath, datasetPath, pjName, actionType, threshold, dbDir, pairsPath, dumpsName, gumInput); -// level2(serverWait, port, pythonPath, datasetPath, pjName, actionType, threshold, dbDir, dumpsName, gumInput); -// level3(serverWait, port, pythonPath, datasetPath, pjName, actionType, threshold, dbDir, dumpsName, gumInput); + level3(portDumps, pythonPath, datasetPath, pjName, actionType, threshold, dbDir, dumpsName, gumInput); break; case "EXTRACTPATTERN": - PatternExtractor.mainLaunch(portInner,serverWait,numOfWorkers,jobType,portDumps,pythonPath,datasetPath,pjName,dbNo,actionType,threshold); + PatternExtractor.mainLaunch(portInner,numOfWorkers,jobType,portDumps,pythonPath,datasetPath,pjName,actionType,threshold); break; case "GETPATTERN": - PatternExtractor.mainLaunch(portInner,serverWait,numOfWorkers,jobType,portDumps,pythonPath,datasetPath,pjName,dbNo,actionType,threshold); + PatternExtractor.mainLaunch(portInner,numOfWorkers,jobType,portDumps,pythonPath,datasetPath,pjName,actionType,threshold); break; } } catch (Exception e) { @@ -120,63 +111,63 @@ public class Launcher { } - private static void level1(String portInner, String serverWait, String port, String pythonPath, String datasetPath, String pjName, String actionType, String threshold, String dbDir, String pairsPath, String dumpsName, String gumInput) throws Exception { + private static void level1(String portInner, String port, String pythonPath, String datasetPath, String pjName, String actionType, String threshold, String dbDir, String pairsPath, String dumpsName, String gumInput) throws Exception { - TreeLoaderClusterL1.main(portInner, serverWait, port, dbDir, "level1-"+pjName+ actionType+".rdb", dbDir ,pjName + actionType); + TreeLoaderClusterL1.main(portInner, port, dbDir, "level1-"+pjName+ actionType+".rdb", dbDir ,pjName + actionType); CallShell cs1 =new CallShell(); String db1 = "bash "+dbDir + "/" + "startServer.sh" +" %s %s %s"; String db11 = String.format(db1, dbDir,"level1-"+pjName+ actionType+".rdb" ,Integer.valueOf(port)); - cs1.runShell(db11,serverWait, port); + cs1.runShell(db11, port); String runpy = "bash "+datasetPath + "/" + "launchPy.sh" +" %s %s %s %s %s %s"; String formatRunPy = String.format(runpy,pythonPath +"/abstractPatch.py", gumInput, datasetPath + "/cluster"+pjName+ actionType, port, "matches" + pjName + actionType, threshold); cs1.runShell(formatRunPy); String stopServer = "bash "+dbDir + "/" + "stopServer.sh" +" %s"; stopServer = String.format(stopServer,Integer.valueOf(port)); - cs1.runShell(stopServer,serverWait, port); + cs1.runShell(stopServer, port); } - private static void level2(String serverWait, String port, String pythonPath, String datasetPath, String pjName, String actionType, String threshold, String dbDir, String dumpsName, String gumInput) throws Exception { + private static void level2(String port, String pythonPath, String datasetPath, String pjName, String actionType, String threshold, String dbDir, String dumpsName, String gumInput) throws Exception { String stopServer; MultiThreadTreeLoaderCluster.calculatePairsOfClusters(datasetPath + "/cluster"+pjName+ actionType, datasetPath,actionType); - MultiThreadTreeLoaderCluster.mainCompare("6300", datasetPath+"/pairs"+actionType, datasetPath + "/redisSingleImport.sh", dbDir, "clusterl1-"+pjName+actionType+".rdb", actionType+dumpsName, "6301",serverWait,actionType); + MultiThreadTreeLoaderCluster.mainCompare("6300", datasetPath+"/pairs"+actionType, datasetPath + "/redisSingleImport.sh", dbDir, "clusterl1-"+pjName+actionType+".rdb", actionType+dumpsName, "6301",actionType); CallShell cs3 =new CallShell(); String db22 = "bash "+dbDir + "/" + "startServer.sh" +" %s %s %s"; String db1b = String.format(db22, dbDir,"clusterl1-"+pjName+actionType+".rdb",Integer.valueOf(port)); - cs3.runShell(db1b,serverWait, port); + cs3.runShell(db1b, port); String runpy2 = "bash "+datasetPath + "/" + "launchPy.sh" +" %s %s %s %s %s %s"; String formatRunPy1a = String.format(runpy2,pythonPath +"/abstractPatchCluster.py", gumInput, datasetPath + "/cluster"+pjName+ actionType, port, datasetPath + "/cluster-2l"+pjName+ actionType,threshold); cs3.runShell(formatRunPy1a); String stopServer1a = "bash "+dbDir + "/" + "stopServer.sh" +" %s"; stopServer = String.format(stopServer1a,Integer.valueOf(port)); - cs3.runShell(stopServer,serverWait, port); + cs3.runShell(stopServer, port); } - private static void level3(String serverWait, String port, String pythonPath, String datasetPath, String pjName, String actionType, String threshold, String dbDir, String dumpsName, String gumInput) throws Exception { + private static void level3(String port, String pythonPath, String datasetPath, String pjName, String actionType, String threshold, String dbDir, String dumpsName, String gumInput) throws Exception { String stopServer; MultiThreadTreeLoaderCluster3.calculatePairsOfClusters(datasetPath + "/cluster-2l"+pjName+ actionType, datasetPath,actionType); - MultiThreadTreeLoaderCluster3.mainCompare("6300", datasetPath+"/pairs-2l"+actionType, datasetPath + "/redisSingleImport.sh", dbDir, "clusterl2-"+pjName+actionType+".rdb", actionType+dumpsName, "6301",serverWait,actionType); + MultiThreadTreeLoaderCluster3.mainCompare("6300", datasetPath+"/pairs-2l"+actionType, datasetPath + "/redisSingleImport.sh", dbDir, "clusterl2-"+pjName+actionType+".rdb", actionType+dumpsName, "6301",actionType); CallShell cs5 =new CallShell(); String dba = "bash "+dbDir + "/" + "startServer.sh" +" %s %s %s"; String dbaa = String.format(dba, dbDir,"clusterl2-"+pjName+actionType+".rdb",Integer.valueOf(port)); - cs5.runShell(dbaa,serverWait, port); + cs5.runShell(dbaa, port); String runpya = "bash "+datasetPath + "/" + "launchPy.sh" +" %s %s %s %s %s %s"; String formatRunPya = String.format(runpya,pythonPath +"/abstractPatchClusterLevel3.py", gumInput, datasetPath + "/cluster-3l"+pjName+ actionType, port, datasetPath + "/cluster-2l"+pjName+ actionType,threshold); cs5.runShell(formatRunPya); String stopServera = "bash "+dbDir + "/" + "stopServer.sh" +" %s"; stopServer = String.format(stopServera,Integer.valueOf(port)); - cs5.runShell(stopServer,serverWait, port); + cs5.runShell(stopServer, port); return; } -// System.exit(1); + } diff --git a/src/main/java/edu/lu/uni/serval/fixminer/PatternExtractor.java b/src/main/java/edu/lu/uni/serval/fixminer/PatternExtractor.java index edd65c1..bbc33a5 100644 --- a/src/main/java/edu/lu/uni/serval/fixminer/PatternExtractor.java +++ b/src/main/java/edu/lu/uni/serval/fixminer/PatternExtractor.java @@ -1,7 +1,5 @@ package edu.lu.uni.serval.fixminer; -import com.github.gumtreediff.tree.ITree; -import com.github.gumtreediff.tree.TreeContext; import edu.lu.uni.serval.FixPattern.utils.Checker; import edu.lu.uni.serval.gumtree.regroup.HierarchicalActionSet; import org.slf4j.Logger; @@ -21,7 +19,6 @@ import java.util.List; import java.util.stream.Collectors; import java.util.stream.Stream; -import static edu.lu.uni.serval.fixminer.cluster.AkkaTreeLoader.getASTTree; /** * Created by anilkoyuncu on 02/08/2018. @@ -30,7 +27,7 @@ public class PatternExtractor { private static Logger log = LoggerFactory.getLogger(PatternExtractor.class); - public static void mainLaunch(String portInner,String serverWait, String numOfWorkers,String jobType,String port, String pythonPath, String datasetPath, String pjName, String dbNo, String actionType,String threshold) { + public static void mainLaunch(String portInner,String numOfWorkers,String jobType,String port, String pythonPath, String datasetPath, String pjName, String actionType,String threshold) { String dbDir; @@ -55,7 +52,7 @@ public class PatternExtractor { switch (jobType) { case "EXTRACTPATTERN": - loadDB(gumOutput, portInner, serverWait, dbDir, actionType+dumpsName,actionType,fixes); + loadDB(gumOutput, portInner, dbDir, actionType+dumpsName,actionType,fixes); break; case "GETPATTERN": getPattern(fixes,actionType); @@ -67,7 +64,7 @@ public class PatternExtractor { } - public static void loadDB(String inputPath,String portInner,String serverWait,String dbDir,String chunkName,String operation,List fixes) throws Exception { + public static void loadDB(String inputPath,String portInner,String dbDir,String chunkName,String operation,List fixes) throws Exception { // String inputPath; // String portInner; // String serverWait; @@ -246,24 +243,24 @@ public class PatternExtractor { } } - public static ITree getSimpliedTree(HierarchicalActionSet actionSet) { - - ITree tree = null; - Jedis inner = null; - try { - - ITree parent = null; - ITree children = null; - TreeContext tc = new TreeContext(); - tree = getASTTree(actionSet, parent, children, tc); -// tree.setParent(null); - tc.validate(); - - } catch (Exception e) { - e.printStackTrace(); - } - return tree; - } +// public static ITree getSimpliedTree(HierarchicalActionSet actionSet) { +// +// ITree tree = null; +// Jedis inner = null; +// try { +// +// ITree parent = null; +// ITree children = null; +// TreeContext tc = new TreeContext(); +// tree = getASTTree(actionSet, parent, children, tc); +//// tree.setParent(null); +// tc.validate(); +// +// } catch (Exception e) { +// e.printStackTrace(); +// } +// return tree; +// } diff --git a/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/TestHunkParserSingleFile.java b/src/main/java/edu/lu/uni/serval/fixminer/TestHunkParserSingleFile.java similarity index 72% rename from src/main/java/edu/lu/uni/serval/FixPatternParser/violations/TestHunkParserSingleFile.java rename to src/main/java/edu/lu/uni/serval/fixminer/TestHunkParserSingleFile.java index 58ad0dc..44575a7 100644 --- a/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/TestHunkParserSingleFile.java +++ b/src/main/java/edu/lu/uni/serval/fixminer/TestHunkParserSingleFile.java @@ -1,20 +1,18 @@ -package edu.lu.uni.serval.FixPatternParser.violations; +package edu.lu.uni.serval.fixminer; import akka.actor.ActorRef; import akka.actor.ActorSystem; import edu.lu.uni.serval.MultipleThreadsParser.MessageFile; import edu.lu.uni.serval.MultipleThreadsParser.ParseFixPatternActor; import edu.lu.uni.serval.MultipleThreadsParser.WorkMessage; -import edu.lu.uni.serval.config.Configuration; import edu.lu.uni.serval.utils.FileHelper; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import java.io.File; -import java.io.FileInputStream; -import java.io.FileNotFoundException; -import java.io.IOException; -import java.util.*; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.List; import java.util.stream.Collectors; import java.util.stream.Stream; @@ -232,131 +230,10 @@ public class TestHunkParserSingleFile { // } } - public static void classifyByAlarmTypes() { - final String alarmTypesFilePath = Configuration.ALARM_TYPES_FILE; - List alarmTypes = readStringList(alarmTypesFilePath); - //edit scripts, sizes of edit scripts, buggy tokens, patches. - classifyByAlarmTypes(alarmTypes, Configuration.EDITSCRIPT_SIZES_FILE); - classifyByAlarmTypes(alarmTypes, Configuration.EDITSCRIPTS_FILE); - classifyByAlarmTypes(alarmTypes, Configuration.BUGGY_CODE_TOKENS_FILE); - classifyByAlarmTypes2(alarmTypes, Configuration.PATCH_SOURCECODE_FILE); - } - private static void classifyByAlarmTypes(List alarmTypes, String file) { - Map buildersMap = new HashMap<>(); - FileInputStream fis = null; - Scanner scanner = null; - try { - fis = new FileInputStream(file); - scanner = new Scanner(fis); - int counter = 0; - while (scanner.hasNextLine()) { - String alarmType = alarmTypes.get(counter); - StringBuilder builder = getBuilder(buildersMap, alarmType); - builder.append(scanner.nextLine() + "\n"); - counter ++; - if (counter % 1000 == 0) { - outputBuilders(buildersMap, file); - } - } - } catch (FileNotFoundException e) { - e.printStackTrace(); - } finally { - try { - scanner.close(); - fis.close(); - } catch (IOException e) { - e.printStackTrace(); - } - } - outputBuilders(buildersMap, file); - } - - private static void classifyByAlarmTypes2(List alarmTypes, String patchSourcecodeFile) { - Map buildersMap = new HashMap<>(); - FileInputStream fis = null; - Scanner scanner = null; - try { - fis = new FileInputStream(patchSourcecodeFile); - scanner = new Scanner(fis); - int counter = 0; - String singlePatch = ""; - while (scanner.hasNextLine()) { - String line = scanner.nextLine(); - if (Configuration.PATCH_SIGNAL.equals(line)) { - if (!"".equals(singlePatch)) { - String alarmType = alarmTypes.get(counter); - StringBuilder builder = getBuilder(buildersMap, alarmType); - builder.append(scanner.nextLine() + "\n"); - counter ++; - if (counter % 2000 == 0) { - outputBuilders(buildersMap, patchSourcecodeFile); - } - } - singlePatch = line + "\n"; - } - singlePatch += line + "\n"; - } - } catch (FileNotFoundException e) { - e.printStackTrace(); - } finally { - try { - scanner.close(); - fis.close(); - } catch (IOException e) { - e.printStackTrace(); - } - } - - outputBuilders(buildersMap, patchSourcecodeFile); - } - private static void outputBuilders(Map map, String fileNameStr) { - File file = new File(fileNameStr); - String fileName = file.getName(); - String parentPath = file.getParent(); - for (Map.Entry entry : map.entrySet()) { - String alarmType = entry.getKey(); - StringBuilder builder = entry.getValue(); - - FileHelper.outputToFile(parentPath + "/" + alarmType + "/" + fileName, builder, true); - - builder.setLength(0); - entry.setValue(builder); - } - } - public static List readStringList(String inputFile) { - List list = new ArrayList<>(); - FileInputStream fis = null; - Scanner scanner = null; - try { - fis = new FileInputStream(inputFile); - scanner = new Scanner(fis); - while(scanner.hasNextLine()) { - list.add(scanner.nextLine()); - } - } catch (FileNotFoundException e) { - e.printStackTrace(); - } finally { - try { - scanner.close(); - fis.close(); - } catch (IOException e) { - e.printStackTrace(); - } - } - return list; - } - private static StringBuilder getBuilder(Map buildersMap, String alarmType) { - if (buildersMap.containsKey(alarmType)) { - return buildersMap.get(alarmType); - } else { - StringBuilder builder = new StringBuilder(); - buildersMap.put(alarmType, builder); - return builder; - } - } + } diff --git a/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/TestTreeLoader.java b/src/main/java/edu/lu/uni/serval/fixminer/TestTreeLoader.java similarity index 54% rename from src/main/java/edu/lu/uni/serval/FixPatternParser/violations/TestTreeLoader.java rename to src/main/java/edu/lu/uni/serval/fixminer/TestTreeLoader.java index ad23b9c..9beb253 100644 --- a/src/main/java/edu/lu/uni/serval/FixPatternParser/violations/TestTreeLoader.java +++ b/src/main/java/edu/lu/uni/serval/fixminer/TestTreeLoader.java @@ -1,15 +1,16 @@ -package edu.lu.uni.serval.FixPatternParser.violations; +package edu.lu.uni.serval.fixminer; import com.github.gumtreediff.actions.ActionGenerator; import com.github.gumtreediff.actions.model.Action; -import com.github.gumtreediff.matchers.Mapping; import com.github.gumtreediff.matchers.Matcher; import com.github.gumtreediff.matchers.Matchers; import com.github.gumtreediff.tree.ITree; -import edu.lu.uni.serval.gumtree.regroup.SimplifyTree; import java.io.*; -import java.util.*; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.Collections; +import java.util.List; import java.util.stream.Collectors; import java.util.stream.Stream; @@ -132,98 +133,98 @@ public class TestTreeLoader { } - public static void compareAll(List folders){ - List trees = new ArrayList<>(); - HashMap hmap = new HashMap(); - for (File target : folders) { - - try { - FileInputStream fi = new FileInputStream(new File(target.toString())); - ObjectInputStream oi = new ObjectInputStream(fi); - ITree pr1 = (ITree) oi.readObject(); - oi.close(); - fi.close(); - trees.add(pr1); - hmap.put(folders.indexOf(target), target.toString()); - - } catch (FileNotFoundException e) { - System.out.println("File not found"); - } catch (IOException e) { - System.out.println("Error initializing stream"); - } catch (ClassNotFoundException e) { - // TODO Auto-generated catch block - e.printStackTrace(); - } - } - - for (ITree tree : trees) { -// SimplifyTree simplifyTree = new SimplifyTree(); -// simplifyTree.canonicalizeSourceCodeTree(tree); - tree.setLabel(""); - tree.setParent(null); - List descendants = tree.getDescendants(); - for (ITree descendant : descendants) { - descendant.setLabel(""); - } - - } - System.out.println("a"); - - try { - - - - for (int i = 0; i < trees.size(); i++) { - for (int j = i + 1; j < trees.size(); j++) { - // compare list.get(i) and list.get(j) - BufferedWriter writer = new BufferedWriter(new FileWriter("output.txt",true)); - ITree oldTree = trees.get(i); - - ITree newTree = trees.get(j); - - Matcher m = Matchers.getInstance().getMatcher(oldTree, newTree); - m.match(); - - ActionGenerator ag = new ActionGenerator(oldTree, newTree, m.getMappings()); - ag.generate(); - List actions = ag.getActions(); - writer.write(String.valueOf(i)); - writer.write("\t"); - writer.write(String.valueOf(j)); - writer.write("\t"); - - writer.write(String.format("%1.2f", m.chawatheSimilarity(oldTree, newTree))); - writer.write("\t"); - writer.write(String.format("%1.2f", m.diceSimilarity(oldTree, newTree))); - writer.write("\t"); - writer.write(String.format("%1.2f", m.jaccardSimilarity(oldTree, newTree))); - writer.write("\t"); - writer.write(String.valueOf(actions.size())); - writer.write("\t"); - writer.write(hmap.get(i)); - writer.write("\t"); - writer.write(hmap.get(j)); - writer.write("\n"); - - writer.close(); - } - } - - - } catch (FileNotFoundException e) { - System.out.println("File not found"); - } catch (IOException e) { - System.out.println("Error initializing stream"); - - } - - -// if (actions.size() > 1) { -// Matcher m1 = Matchers.getInstance().getMatcher(actions.get(0).getNode(), actions.get(0).getNode()); -// m1.match(); -// Set mappingSet1 = m1.getMappingSet(); +// public static void compareAll(List folders){ +// List trees = new ArrayList<>(); +// HashMap hmap = new HashMap(); +// for (File target : folders) { +// +// try { +// FileInputStream fi = new FileInputStream(new File(target.toString())); +// ObjectInputStream oi = new ObjectInputStream(fi); +// ITree pr1 = (ITree) oi.readObject(); +// oi.close(); +// fi.close(); +// trees.add(pr1); +// hmap.put(folders.indexOf(target), target.toString()); +// +// } catch (FileNotFoundException e) { +// System.out.println("File not found"); +// } catch (IOException e) { +// System.out.println("Error initializing stream"); +// } catch (ClassNotFoundException e) { +// // TODO Auto-generated catch block +// e.printStackTrace(); +// } +// } +// +// for (ITree tree : trees) { +//// SimplifyTree simplifyTree = new SimplifyTree(); +//// simplifyTree.canonicalizeSourceCodeTree(tree); +// tree.setLabel(""); +// tree.setParent(null); +// List descendants = tree.getDescendants(); +// for (ITree descendant : descendants) { +// descendant.setLabel(""); +// } // // } - } +// System.out.println("a"); +// +// try { +// +// +// +// for (int i = 0; i < trees.size(); i++) { +// for (int j = i + 1; j < trees.size(); j++) { +// // compare list.get(i) and list.get(j) +// BufferedWriter writer = new BufferedWriter(new FileWriter("output.txt",true)); +// ITree oldTree = trees.get(i); +// +// ITree newTree = trees.get(j); +// +// Matcher m = Matchers.getInstance().getMatcher(oldTree, newTree); +// m.match(); +// +// ActionGenerator ag = new ActionGenerator(oldTree, newTree, m.getMappings()); +// ag.generate(); +// List actions = ag.getActions(); +// writer.write(String.valueOf(i)); +// writer.write("\t"); +// writer.write(String.valueOf(j)); +// writer.write("\t"); +// +// writer.write(String.format("%1.2f", m.chawatheSimilarity(oldTree, newTree))); +// writer.write("\t"); +// writer.write(String.format("%1.2f", m.diceSimilarity(oldTree, newTree))); +// writer.write("\t"); +// writer.write(String.format("%1.2f", m.jaccardSimilarity(oldTree, newTree))); +// writer.write("\t"); +// writer.write(String.valueOf(actions.size())); +// writer.write("\t"); +// writer.write(hmap.get(i)); +// writer.write("\t"); +// writer.write(hmap.get(j)); +// writer.write("\n"); +// +// writer.close(); +// } +// } +// +// +// } catch (FileNotFoundException e) { +// System.out.println("File not found"); +// } catch (IOException e) { +// System.out.println("Error initializing stream"); +// +// } +// +// +//// if (actions.size() > 1) { +//// Matcher m1 = Matchers.getInstance().getMatcher(actions.get(0).getNode(), actions.get(0).getNode()); +//// m1.match(); +//// Set mappingSet1 = m1.getMappingSet(); +//// +//// } +// } } diff --git a/src/main/java/edu/lu/uni/serval/fixminer/cluster/AkkaTreeLoader.java b/src/main/java/edu/lu/uni/serval/fixminer/cluster/AkkaTreeLoader.java index 2e2c19b..2cc115b 100644 --- a/src/main/java/edu/lu/uni/serval/fixminer/cluster/AkkaTreeLoader.java +++ b/src/main/java/edu/lu/uni/serval/fixminer/cluster/AkkaTreeLoader.java @@ -1,20 +1,17 @@ package edu.lu.uni.serval.fixminer.cluster; -import com.github.gumtreediff.tree.ITree; -import com.github.gumtreediff.tree.TreeContext; -import edu.lu.uni.serval.FixPattern.utils.ASTNodeMap; -import edu.lu.uni.serval.gumtree.regroup.HierarchicalActionSet; -import org.junit.Assert; +import edu.lu.uni.serval.FixPattern.utils.PoolBuilder; import org.slf4j.Logger; import org.slf4j.LoggerFactory; -import redis.clients.jedis.*; +import redis.clients.jedis.Jedis; +import redis.clients.jedis.JedisPool; -import java.io.*; -import java.time.Duration; -import java.util.*; -import java.util.concurrent.Executors; -import java.util.function.Consumer; -import java.util.stream.Collectors; +import java.io.BufferedReader; +import java.io.FileReader; +import java.io.IOException; +import java.util.HashMap; +import java.util.Map; +import java.util.regex.Pattern; import static edu.lu.uni.serval.fixminer.cluster.akka.AkkaTreeParser.akkaCompare; @@ -23,58 +20,13 @@ import static edu.lu.uni.serval.fixminer.cluster.akka.AkkaTreeParser.akkaCompare */ public class AkkaTreeLoader { - private static class StreamGobbler implements Runnable { - private InputStream inputStream; - private Consumer consumer; - - public StreamGobbler(InputStream inputStream, Consumer consumer) { - this.inputStream = inputStream; - this.consumer = consumer; - } - - @Override - public void run() { - new BufferedReader(new InputStreamReader(inputStream)).lines() - .forEach(consumer); - } - } - private static Logger log = LoggerFactory.getLogger(AkkaTreeLoader.class); - public static void loadRedis(String cmd,String serverWait){ - Process process; - - try { -// String comd = String.format(cmd, f.getAbsoluteFile()); - process = Runtime.getRuntime() - - .exec(cmd); + public static void main(String portInner, String dbDir, String chunkName, String port, String dumpsName, String pairsPath, String numOfWorkers, String cursor,String chunk) throws Exception { - StreamGobbler streamGobbler = - new StreamGobbler(process.getInputStream(), System.out::println); - Executors.newSingleThreadExecutor().submit(streamGobbler); - int exitCode = process.waitFor(); - assert exitCode == 0; -// Thread.sleep(Integer.valueOf(serverWait)); - - } catch (IOException e) { - e.printStackTrace(); - } - catch (InterruptedException e) { - e.printStackTrace(); - } - log.info("Load done"); - } - - private static Consumer consumer = Assert::assertNotNull; - - - public static void main(String portInner, String serverWait, String dbDir, String chunkName, String port, String dumpsName, String pairsPath, String numOfWorkers, String cursor) throws Exception { - - - String parameters = String.format("\nportInner %s \nserverWait %s \nchunkName %s \ndbDir %s \ndumpsName %s",portInner,serverWait,chunkName,dbDir,dumpsName); + String parameters = String.format("\nportInner %s \nchunkName %s \ndbDir %s \ndumpsName %s",portInner,chunkName,dbDir,dumpsName); log.info(parameters); @@ -82,243 +34,76 @@ public class AkkaTreeLoader { String cmd = "bash "+dbDir + "/" + "startServer.sh" +" %s %s %s"; String cmd1 = String.format(cmd, dbDir,dumpsName,Integer.valueOf(port)); // - cs.runShell(cmd1,serverWait,port); + cs.runShell(cmd1,port); String cmdInner = "bash "+dbDir + "/" + "startServer.sh" +" %s %s %s"; String cmd2 = String.format(cmdInner, dbDir,chunkName,Integer.valueOf(portInner)); log.info(cmd1); log.info(cmd2); // - cs.runShell(cmd2,serverWait, portInner); - JedisPool outerPool = new JedisPool(poolConfig, "127.0.0.1",Integer.valueOf(port),20000000); - JedisPool innerPool = new JedisPool(poolConfig, "127.0.0.1",Integer.valueOf(portInner),20000000); - - -// Jedis jedis = new Jedis(new URI("redis://localhost:"+port)); -// while (!jedis.ping().equals("PONG")){ -// log.info("wait"); -// } -// -// jedis = new Jedis(new URI("redis://localhost:"+portInner)); -// while (!jedis.ping().equals("PONG")){ -// log.info("wait"); -// } - - -// String pairsIndexFile = pairsPath + "/"+ chunkName; -// pairsIndexFile = pairsIndexFile.replace("csv.rdb","index"); -// -// -// Pattern pattern = Pattern.compile(","); -// String csvFile = pairsIndexFile; -// try { -// try (BufferedReader in = new BufferedReader(new FileReader(csvFile));){ -// Map namefreq = in -// .lines() -// // .skip(1) -// .map(x -> pattern.split(x)) -// // .filter(x -> x[4].equals("CA") && x[3].equals("F")) -// .collect(HashMap::new, (map, x) -> -// map.put(x[0], x[1]), -// Map::putAll); -// // namefreq.forEach((k, v) -> System.out.println(k + " => " + v)); -// -// Jedis inner = null; -// try { -// inner = outerPool.getResource(); -// -// for (Map.Entry entry : namefreq.entrySet()) { -// String key = entry.getKey(); -// String value = entry.getValue(); -// inner.select(1); -// inner.set(key,value); -// // ... -// } -// -// -// }finally { -// if (inner != null) { -// inner.close(); -// } -// } -// -// -// } -// } catch (IOException e) { -// e.printStackTrace(); -// } + cs.runShell(cmd2, portInner); + JedisPool outerPool = new JedisPool(PoolBuilder.getPoolConfig(), "127.0.0.1",Integer.valueOf(port),20000000); + JedisPool innerPool = new JedisPool(PoolBuilder.getPoolConfig(), "127.0.0.1",Integer.valueOf(portInner),20000000); -// comparePairs(innerPool,outerPool); - Thread.sleep(Integer.valueOf(serverWait)); - akkaCompare(innerPool,outerPool,numOfWorkers,cursor); - -// String stopServer = "bash "+dbDir + "/" + "stopServer.sh" +" %s"; -// String stopServer1 = String.format(stopServer,Integer.valueOf(portInner)); -// -// cs.runShell(stopServer1,serverWait); -// stopServer = "bash "+dbDir + "/" + "stopServer.sh" +" %s"; -// String stopServer2 = String.format(stopServer,Integer.valueOf(port)); -// -// cs.runShell(stopServer2,serverWait); + String pairsIndexFile = pairsPath + "/"+ chunkName; + //0.txt.rdb + pairsIndexFile = pairsIndexFile.replace(chunk+".rdb",".index"); - } + Pattern pattern = Pattern.compile(","); + String csvFile = pairsIndexFile; + try { + try (BufferedReader in = new BufferedReader(new FileReader(csvFile));){ + Map namefreq = in + .lines() + .map(x -> pattern.split(x)) + .collect(HashMap::new, (map, x) -> + map.put(x[0], x[1]), + Map::putAll); - public static void comparePairs(JedisPool innerPool,JedisPool outerPool){ + Jedis inner = null; + try { + inner = outerPool.getResource(); - - ScanResult scan; - - try (Jedis inner = innerPool.getResource()) { - while (!inner.ping().equals("PONG")){ - log.info("wait"); + for (Map.Entry entry : namefreq.entrySet()) { + String key = entry.getKey(); + String value = entry.getValue(); + inner.select(1); + inner.set(key,value); } - ScanParams sc = new ScanParams(); - //150000000 - log.info("Scanning "); - sc.count(250000000); - sc.match("pair_[0-9]*"); - - scan = inner.scan("0", sc); - int size = scan.getResult().size(); - log.info("Scanned " + String.valueOf(size)); + }finally { + if (inner != null) { + inner.close(); + } } - List result = scan.getResult(); - log.info("Getting results"); - result - .parallelStream() - .forEach(m -> - { - Compare compare = new Compare(); - compare.coreCompare(m, innerPool, outerPool); - ; - } - ); - - -// } - - - - - } - - /** Read the object from Base64 string. */ - private static Object fromString( String s ) throws IOException , - ClassNotFoundException { - byte [] data = Base64.getDecoder().decode( s ); - ObjectInputStream ois = new ObjectInputStream( - new ByteArrayInputStream( data ) ); - Object o = ois.readObject(); - ois.close(); - return o; - } - public static ITree getSimpliedTree(String fn,JedisPool outerPool) { - - ITree tree = null; - Jedis inner = null; - try { - inner = outerPool.getResource(); - while (!inner.ping().equals("PONG")){ - log.info("wait"); } - inner.select(1); - String dist2load = inner.get(fn); - inner.select(0); - String s = inner.get(dist2load); - HierarchicalActionSet actionSet = (HierarchicalActionSet) fromString(s); - - ITree parent = null; - ITree children =null; - TreeContext tc = new TreeContext(); - tree = getASTTree(actionSet, parent, children,tc); - tree.setParent(null); - tc.validate(); - } catch (IOException e) { e.printStackTrace(); - } catch (ClassNotFoundException e) { - e.printStackTrace(); - }finally { - if (inner != null) { - inner.close(); - } } - return tree; + + + + + akkaCompare(innerPool,outerPool,numOfWorkers,cursor); + + + } - public static List getKeysByValue(Map map, E value) { - return map.entrySet() - .stream() - .filter(entry -> Objects.equals(entry.getValue(), value)) - .map(Map.Entry::getKey) - .collect(Collectors.toList()); - } - - public static ITree getASTTree(HierarchicalActionSet actionSet, ITree parent, ITree children,TreeContext tc){ - - int newType = 0; - - String astNodeType = actionSet.getAstNodeType(); - List keysByValue = getKeysByValue(ASTNodeMap.map, astNodeType); - - if(keysByValue.size() != 1){ - log.error("More than 1"); - } - newType = keysByValue.get(0); - if(actionSet.getParent() == null){ - //root - -// parent = new Tree(newType,""); - parent = tc.createTree(newType, "", null); - tc.setRoot(parent); - }else{ -// children = new Tree(newType,""); -// parent.addChild(children); - children = tc.createTree(newType, "", null); - children.setParentAndUpdateChildren(parent); - } - List subActions = actionSet.getSubActions(); - if (subActions.size() != 0){ - for (HierarchicalActionSet subAction : subActions) { - - if(actionSet.getParent() == null){ - children = parent; - } - getASTTree(subAction,children,null,tc); - - } - } - return parent; - } - static final JedisPoolConfig poolConfig = buildPoolConfig(); - private static JedisPoolConfig buildPoolConfig() { - final JedisPoolConfig poolConfig = new JedisPoolConfig(); - poolConfig.setMaxTotal(128); - poolConfig.setMaxIdle(128); - poolConfig.setMinIdle(16); - poolConfig.setTestOnBorrow(false); - poolConfig.setTestOnReturn(false); - poolConfig.setTestWhileIdle(true); - poolConfig.setMinEvictableIdleTimeMillis(Duration.ofMinutes(60).toMillis()); - poolConfig.setTimeBetweenEvictionRunsMillis(Duration.ofHours(30).toMillis()); -// poolConfig.setNumTestsPerEvictionRun(3); - poolConfig.setBlockWhenExhausted(true); - return poolConfig; - } + diff --git a/src/main/java/edu/lu/uni/serval/fixminer/cluster/CalculatePairs.java b/src/main/java/edu/lu/uni/serval/fixminer/cluster/CalculatePairs.java index 5a80670..87ab887 100644 --- a/src/main/java/edu/lu/uni/serval/fixminer/cluster/CalculatePairs.java +++ b/src/main/java/edu/lu/uni/serval/fixminer/cluster/CalculatePairs.java @@ -1,5 +1,6 @@ package edu.lu.uni.serval.fixminer.cluster; +import edu.lu.uni.serval.FixPattern.utils.PoolBuilder; import edu.lu.uni.serval.utils.FileHelper; import org.slf4j.Logger; import org.slf4j.LoggerFactory; @@ -13,7 +14,6 @@ import java.nio.ByteBuffer; import java.nio.channels.FileChannel; import java.util.List; -import static edu.lu.uni.serval.fixminer.cluster.TreeLoaderClusterL1.poolConfig; /** * Created by anilkoyuncu on 05/04/2018. @@ -21,21 +21,21 @@ import static edu.lu.uni.serval.fixminer.cluster.TreeLoaderClusterL1.poolConfig; public class CalculatePairs { private static Logger log = LoggerFactory.getLogger(CalculatePairs.class); - public static void main(String serverWait,String dbDir,String chunkName,String port,String outputPath,String pjName) throws Exception { + public static void main(String dbDir,String chunkName,String port,String outputPath,String pjName) throws Exception { - String parameters = String.format("\nport %s \nserverWait %s \nchunkName %s \ndbDir %s",port,serverWait,chunkName,dbDir); + String parameters = String.format("\nport %s \nchunkName %s \ndbDir %s",port,chunkName,dbDir); log.info(parameters); CallShell cs =new CallShell(); String cmd = "bash "+dbDir + "/" + "startServer.sh" +" %s %s %s"; cmd = String.format(cmd, dbDir,chunkName,Integer.valueOf(port)); - cs.runShell(cmd,serverWait, port); + cs.runShell(cmd, port); FileHelper.createDirectory(outputPath); - JedisPool outerPool = new JedisPool(poolConfig, "127.0.0.1",Integer.valueOf(port),20000000); + JedisPool outerPool = new JedisPool(PoolBuilder.getPoolConfig(), "127.0.0.1",Integer.valueOf(port),20000000); ScanResult scan; try (Jedis outer = outerPool.getResource()) { diff --git a/src/main/java/edu/lu/uni/serval/fixminer/cluster/CallShell.java b/src/main/java/edu/lu/uni/serval/fixminer/cluster/CallShell.java index 3c32292..9c1d05d 100644 --- a/src/main/java/edu/lu/uni/serval/fixminer/cluster/CallShell.java +++ b/src/main/java/edu/lu/uni/serval/fixminer/cluster/CallShell.java @@ -26,7 +26,7 @@ public class CallShell { } - public static void runShell(String command, String serverWait, String port) throws Exception { + public static void runShell(String command, String port) throws Exception { Process process = Runtime.getRuntime().exec(command); BufferedReader reader = new BufferedReader(new InputStreamReader( @@ -101,7 +101,7 @@ try{ public static void main(String[] args) throws Exception { // runPing("redis-cli -p 6380 ping"); - runShell("bash /Users/anilkoyuncu/bugStudy/release/code/redis/startServer.sh /Users/anilkoyuncu/bugStudy/release/code/redis Defects4JALL0.txt.rdb 6380","1","6380"); + runShell("bash /Users/anilkoyuncu/bugStudy/release/code/redis/startServer.sh /Users/anilkoyuncu/bugStudy/release/code/redis Defects4JALL0.txt.rdb 6380","6380"); } diff --git a/src/main/java/edu/lu/uni/serval/fixminer/cluster/Compare.java b/src/main/java/edu/lu/uni/serval/fixminer/cluster/Compare.java index 27ea1c1..49c03af 100644 --- a/src/main/java/edu/lu/uni/serval/fixminer/cluster/Compare.java +++ b/src/main/java/edu/lu/uni/serval/fixminer/cluster/Compare.java @@ -5,6 +5,7 @@ import com.github.gumtreediff.actions.model.Action; import com.github.gumtreediff.matchers.Matcher; import com.github.gumtreediff.matchers.Matchers; import com.github.gumtreediff.tree.ITree; +import edu.lu.uni.serval.FixPattern.utils.EDiff; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import redis.clients.jedis.Jedis; @@ -13,7 +14,6 @@ import redis.clients.jedis.JedisPool; import java.util.List; import java.util.Map; -import static edu.lu.uni.serval.fixminer.cluster.AkkaTreeLoader.getSimpliedTree; /** * Created by anilkoyuncu on 03/04/2018. @@ -44,9 +44,9 @@ public class Compare { // String firstValue = resultMap.get("0"); // String secondValue = resultMap.get("1"); - oldTree = getSimpliedTree(i,outerPool); + oldTree = EDiff.getSimpliedTree(i,outerPool); - newTree = getSimpliedTree(j,outerPool); + newTree = EDiff.getSimpliedTree(j,outerPool); Matcher m = Matchers.getInstance().getMatcher(oldTree, newTree); m.match(); diff --git a/src/main/java/edu/lu/uni/serval/fixminer/cluster/ImportPairs2DB.java b/src/main/java/edu/lu/uni/serval/fixminer/cluster/ImportPairs2DB.java index b6a303f..6249a4a 100644 --- a/src/main/java/edu/lu/uni/serval/fixminer/cluster/ImportPairs2DB.java +++ b/src/main/java/edu/lu/uni/serval/fixminer/cluster/ImportPairs2DB.java @@ -9,9 +9,6 @@ import java.util.List; import java.util.stream.Collectors; import java.util.stream.Stream; -//import static edu.lu.uni.serval.fixminer.cluster.AkkaTreeLoader.loadRedis; -//import static edu.lu.uni.serval.fixminer.cluster.AkkaTreeLoader.loadRedisWait; - /** * Created by anilkoyuncu on 05/04/2018. @@ -19,10 +16,10 @@ import java.util.stream.Stream; public class ImportPairs2DB { private static Logger log = LoggerFactory.getLogger(ImportPairs2DB.class); - public static void main(String csvInputPath,String portInner,String serverWait,String dbDir,String datasetPath) throws Exception { + public static void main(String csvInputPath,String portInner,String dbDir,String datasetPath) throws Exception { - String parameters = String.format("\nInput path %s \nportInner %s \nserverWait %s \ndbDir %s",csvInputPath,portInner,serverWait,dbDir); + String parameters = String.format("\nInput path %s \nportInner %s \ndbDir %s",csvInputPath,portInner,dbDir); log.info(parameters); @@ -40,7 +37,7 @@ public class ImportPairs2DB { cmd = String.format(cmd, dbDir,pj.getName() +".rdb", portInt); log.info(cmd); CallShell cs = new CallShell(); - cs.runShell(cmd,serverWait, portInner); + cs.runShell(cmd, portInner); cmd = "bash "+datasetPath + "/redisSingleImport.sh" +" %s %s"; @@ -50,7 +47,7 @@ public class ImportPairs2DB { String stopServer = "bash "+dbDir + "/" + "stopServer.sh" +" %s"; String stopServer2 = String.format(stopServer,portInt); - cs.runShell(stopServer2,serverWait, portInner); + cs.runShell(stopServer2, portInner); portInt++; diff --git a/src/main/java/edu/lu/uni/serval/fixminer/cluster/MultiThreadTreeLoader.java b/src/main/java/edu/lu/uni/serval/fixminer/cluster/MultiThreadTreeLoader.java index baa1c42..e4e0441 100644 --- a/src/main/java/edu/lu/uni/serval/fixminer/cluster/MultiThreadTreeLoader.java +++ b/src/main/java/edu/lu/uni/serval/fixminer/cluster/MultiThreadTreeLoader.java @@ -1,14 +1,13 @@ package edu.lu.uni.serval.fixminer.cluster; import com.github.gumtreediff.actions.ActionGenerator; -import com.github.gumtreediff.actions.model.*; +import com.github.gumtreediff.actions.model.Action; import com.github.gumtreediff.matchers.Matcher; import com.github.gumtreediff.matchers.Matchers; import com.github.gumtreediff.tree.ITree; import com.github.gumtreediff.tree.Tree; import edu.lu.uni.serval.FixPattern.utils.ASTNodeMap; import edu.lu.uni.serval.gumtree.regroup.HierarchicalActionSet; -import edu.lu.uni.serval.utils.FileHelper; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import redis.clients.jedis.*; @@ -291,17 +290,17 @@ public class MultiThreadTreeLoader { readMessageFiles(fileToCompare,port); } - public static void processMessages(String inputPath, String outputPath) { - File folder = new File(outputPath + "pairs_splitted/"); - File[] listOfFiles = folder.listFiles(); - Stream stream = Arrays.stream(listOfFiles); - List pjs = stream - .filter(x -> !x.getName().startsWith(".")) - .collect(Collectors.toList()); - FileHelper.createDirectory(outputPath + "comparison_splitted/"); - pjs.parallelStream() - .forEach(m -> coreLoop(m, outputPath,inputPath)); - } +// public static void processMessages(String inputPath, String outputPath) { +// File folder = new File(outputPath + "pairs_splitted/"); +// File[] listOfFiles = folder.listFiles(); +// Stream stream = Arrays.stream(listOfFiles); +// List pjs = stream +// .filter(x -> !x.getName().startsWith(".")) +// .collect(Collectors.toList()); +// FileHelper.createDirectory(outputPath + "comparison_splitted/"); +// pjs.parallelStream() +// .forEach(m -> coreLoop(m, outputPath,inputPath)); +// } public static ITree getSimpliedTree(String fn) { @@ -377,45 +376,45 @@ public class MultiThreadTreeLoader { return parent; } - public static ITree getActionTree(HierarchicalActionSet actionSet, ITree parent, ITree children){ - - int newType = 0; - - Action action = actionSet.getAction(); - if (action instanceof Update){ - newType = 101; - }else if(action instanceof Insert){ - newType =100; - }else if(action instanceof Move){ - newType = 102; - }else if(action instanceof Delete){ - newType=103; - }else{ - new Exception("unknow action"); - } - if(actionSet.getParent() == null){ - //root - - parent = new Tree(newType,""); - }else{ - children = new Tree(newType,""); - parent.addChild(children); - } - List subActions = actionSet.getSubActions(); - if (subActions.size() != 0){ - for (HierarchicalActionSet subAction : subActions) { - - if(actionSet.getParent() == null){ - children = parent; - } - getActionTree(subAction,children,null); - - } - - - } - return parent; - } +// public static ITree getActionTree(HierarchicalActionSet actionSet, ITree parent, ITree children){ +// +// int newType = 0; +// +// Action action = actionSet.getAction(); +// if (action instanceof Update){ +// newType = 101; +// }else if(action instanceof Insert){ +// newType =100; +// }else if(action instanceof Move){ +// newType = 102; +// }else if(action instanceof Delete){ +// newType=103; +// }else{ +// new Exception("unknow action"); +// } +// if(actionSet.getParent() == null){ +// //root +// +// parent = new Tree(newType,""); +// }else{ +// children = new Tree(newType,""); +// parent.addChild(children); +// } +// List subActions = actionSet.getSubActions(); +// if (subActions.size() != 0){ +// for (HierarchicalActionSet subAction : subActions) { +// +// if(actionSet.getParent() == null){ +// children = parent; +// } +// getActionTree(subAction,children,null); +// +// } +// +// +// } +// return parent; +// } diff --git a/src/main/java/edu/lu/uni/serval/fixminer/cluster/MultiThreadTreeLoaderCluster.java b/src/main/java/edu/lu/uni/serval/fixminer/cluster/MultiThreadTreeLoaderCluster.java index 09d0eb4..fa6ed79 100644 --- a/src/main/java/edu/lu/uni/serval/fixminer/cluster/MultiThreadTreeLoaderCluster.java +++ b/src/main/java/edu/lu/uni/serval/fixminer/cluster/MultiThreadTreeLoaderCluster.java @@ -1,22 +1,29 @@ package edu.lu.uni.serval.fixminer.cluster; import com.github.gumtreediff.actions.ActionGenerator; -import com.github.gumtreediff.actions.model.*; +import com.github.gumtreediff.actions.model.Action; import com.github.gumtreediff.matchers.Matcher; import com.github.gumtreediff.matchers.Matchers; import com.github.gumtreediff.tree.ITree; import com.github.gumtreediff.tree.TreeContext; +import edu.lu.uni.serval.FixPattern.utils.EDiff; +import edu.lu.uni.serval.FixPattern.utils.EDiffHelper; +import edu.lu.uni.serval.FixPattern.utils.PoolBuilder; import edu.lu.uni.serval.gumtree.regroup.HierarchicalActionSet; import edu.lu.uni.serval.utils.FileHelper; - import org.javatuples.Pair; import org.slf4j.Logger; import org.slf4j.LoggerFactory; -import redis.clients.jedis.*; +import redis.clients.jedis.Jedis; +import redis.clients.jedis.JedisPool; +import redis.clients.jedis.ScanParams; +import redis.clients.jedis.ScanResult; import java.io.*; -import java.time.Duration; -import java.util.*; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.List; +import java.util.Map; import java.util.stream.Collectors; import java.util.stream.Stream; @@ -28,28 +35,27 @@ public class MultiThreadTreeLoaderCluster { private static Logger log = LoggerFactory.getLogger(MultiThreadTreeLoaderCluster.class); - public static void mainCompare(String port,String pairsCSVPath,String importScript,String dbDir,String chunkName,String dumpName,String portInner,String serverWait,String type) throws Exception { + public static void mainCompare(String port,String pairsCSVPath,String importScript,String dbDir,String chunkName,String dumpName,String portInner,String type) throws Exception { CallShell cs = new CallShell(); String cmd1 = "bash "+dbDir + "/" + "startServer.sh" +" %s %s %s"; cmd1 = String.format(cmd1, dbDir,chunkName,Integer.valueOf(portInner)); -// edu.lu.uni.serval.fixminer.cluster.AkkaTreeLoader.loadRedis(cmd1,"1000"); - cs.runShell(cmd1,serverWait, port); + cs.runShell(cmd1, port); String cmd2 = "bash "+dbDir + "/" + "startServer.sh" +" %s %s %s"; cmd2 = String.format(cmd2, dbDir,dumpName,Integer.valueOf(port)); - cs.runShell(cmd2,serverWait, port); -// edu.lu.uni.serval.fixminer.cluster.AkkaTreeLoader.loadRedis(cmd2,"10000"); + cs.runShell(cmd2, port); + String cmd3; cmd3 = "bash " + importScript +" %s %s"; - JedisPool jedisPool = new JedisPool(poolConfig, "127.0.0.1",Integer.valueOf(portInner),20000000); + JedisPool jedisPool = new JedisPool(PoolBuilder.getPoolConfig(), "127.0.0.1",Integer.valueOf(portInner),20000000); - JedisPool outerPool = new JedisPool(poolConfig, "127.0.0.1",Integer.valueOf(port),20000000); + JedisPool outerPool = new JedisPool(PoolBuilder.getPoolConfig(), "127.0.0.1",Integer.valueOf(port),20000000); File folder = new File(pairsCSVPath); @@ -104,29 +110,16 @@ public class MultiThreadTreeLoaderCluster { } String stopServer = "bash "+dbDir + "/" + "stopServer.sh" +" %s"; String stopServer1 = String.format(stopServer,Integer.valueOf(portInner)); -// loadRedis(stopServer2,serverWait); - cs.runShell(stopServer1,serverWait, port); + cs.runShell(stopServer1, port); String stopServer2 = String.format(stopServer,Integer.valueOf(port)); -// loadRedis(stopServer2,serverWait); - cs.runShell(stopServer2,serverWait, port); + cs.runShell(stopServer2, port); } - /** Read the object from Base64 string. */ - public static Object fromString( String s ) throws IOException , - ClassNotFoundException { - byte [] data = Base64.getDecoder().decode( s ); - ObjectInputStream ois = new ObjectInputStream( - new ByteArrayInputStream( data ) ); - Object o = ois.readObject(); - ois.close(); - return o; - } - public static Pair getTree(String firstValue, JedisPool outerPool,String type){ @@ -148,13 +141,13 @@ public class MultiThreadTreeLoaderCluster { inner = outerPool.getResource(); String filename = project + "/"+type+"/" + pureFileName + ".txt_" + actionSetPosition; String si= inner.get(filename); - HierarchicalActionSet actionSet = (HierarchicalActionSet) fromString(si); + HierarchicalActionSet actionSet = (HierarchicalActionSet) EDiffHelper.fromString(si); ITree parent = null; ITree children =null; TreeContext tc = new TreeContext(); - tree = getActionTree(actionSet, parent, children,tc); + tree = EDiff.getActionTree(actionSet, parent, children,tc); tree.setParent(null); tc.validate(); @@ -179,50 +172,7 @@ public class MultiThreadTreeLoaderCluster { } - public static ITree getActionTree(HierarchicalActionSet actionSet, ITree parent, ITree children,TreeContext tc){ - int newType = 0; - - Action action = actionSet.getAction(); - if (action instanceof Update){ - newType = 101; - }else if(action instanceof Insert){ - newType =100; - }else if(action instanceof Move){ - newType = 102; - }else if(action instanceof Delete){ - newType=103; - }else{ - new Exception("unknow action"); - } - if(actionSet.getParent() == null){ - //root - - parent = tc.createTree(newType, "", null); - tc.setRoot(parent); - -// parent = new Tree(newType,""); - }else{ - children = tc.createTree(newType, "", null); - children.setParentAndUpdateChildren(parent); -// children = new Tree(newType,""); -// parent.addChild(children); - } - List subActions = actionSet.getSubActions(); - if (subActions.size() != 0){ - for (HierarchicalActionSet subAction : subActions) { - - if(actionSet.getParent() == null){ - children = parent; - } - getActionTree(subAction,children,null,tc); - - } - - - } - return parent; - } private static void coreCompare(String name , JedisPool jedisPool,String clusterName,JedisPool outerPool,String type) { @@ -383,26 +333,6 @@ public class MultiThreadTreeLoaderCluster { - static final JedisPoolConfig poolConfig = buildPoolConfig(); - - - private static JedisPoolConfig buildPoolConfig() { - final JedisPoolConfig poolConfig = new JedisPoolConfig(); - poolConfig.setMaxTotal(128); - poolConfig.setMaxIdle(128); - poolConfig.setMinIdle(16); - poolConfig.setTestOnBorrow(true); - poolConfig.setTestOnReturn(true); - poolConfig.setTestWhileIdle(true); - poolConfig.setMinEvictableIdleTimeMillis(Duration.ofMinutes(60).toMillis()); - poolConfig.setTimeBetweenEvictionRunsMillis(Duration.ofHours(30).toMillis()); - poolConfig.setNumTestsPerEvictionRun(3); - poolConfig.setBlockWhenExhausted(true); - - return poolConfig; - } - - // return msgFiles; } diff --git a/src/main/java/edu/lu/uni/serval/fixminer/cluster/MultiThreadTreeLoaderCluster3.java b/src/main/java/edu/lu/uni/serval/fixminer/cluster/MultiThreadTreeLoaderCluster3.java index 5cea1b4..661595a 100644 --- a/src/main/java/edu/lu/uni/serval/fixminer/cluster/MultiThreadTreeLoaderCluster3.java +++ b/src/main/java/edu/lu/uni/serval/fixminer/cluster/MultiThreadTreeLoaderCluster3.java @@ -2,24 +2,26 @@ package edu.lu.uni.serval.fixminer.cluster; import com.github.gumtreediff.tree.ITree; import com.github.gumtreediff.tree.TreeContext; -import edu.lu.uni.serval.FixPattern.utils.ASTNodeMap; +import edu.lu.uni.serval.FixPattern.utils.EDiffHelper; +import edu.lu.uni.serval.FixPattern.utils.PoolBuilder; import edu.lu.uni.serval.gumtree.regroup.HierarchicalActionSet; import edu.lu.uni.serval.utils.FileHelper; import org.apache.commons.lang3.StringUtils; import org.apache.commons.text.similarity.JaroWinklerDistance; import org.slf4j.Logger; import org.slf4j.LoggerFactory; -import redis.clients.jedis.*; +import redis.clients.jedis.Jedis; +import redis.clients.jedis.JedisPool; +import redis.clients.jedis.ScanParams; +import redis.clients.jedis.ScanResult; import java.io.*; -import java.time.Duration; import java.util.*; import java.util.regex.Pattern; import java.util.stream.Collectors; import java.util.stream.Stream; -import static edu.lu.uni.serval.fixminer.cluster.MultiThreadTreeLoader.getKeysByValue; -import static edu.lu.uni.serval.fixminer.cluster.MultiThreadTreeLoaderCluster.fromString; + /** * Created by anilkoyuncu on 19/03/2018. @@ -30,27 +32,24 @@ public class MultiThreadTreeLoaderCluster3 { private static Logger log = LoggerFactory.getLogger(MultiThreadTreeLoaderCluster3.class); -// public static void mainCompare(String inputPath,String port,String pairsCSVPath,String importScript) { - public static void mainCompare(String port,String pairsCSVPath,String importScript,String dbDir,String chunkName,String dumpName,String portInner,String serverWait, String type) throws Exception { + public static void mainCompare(String port,String pairsCSVPath,String importScript,String dbDir,String chunkName,String dumpName,String portInner,String type) throws Exception { CallShell cs = new CallShell(); String cmd1 = "bash "+dbDir + "/" + "startServer.sh" +" %s %s %s"; cmd1 = String.format(cmd1, dbDir,chunkName,Integer.valueOf(portInner)); -// edu.lu.uni.serval.fixminer.cluster.AkkaTreeLoader.loadRedis(cmd1,"1000"); - cs.runShell(cmd1,serverWait, port); + cs.runShell(cmd1, port); String cmd2 = "bash "+dbDir + "/" + "startServer.sh" +" %s %s %s"; cmd2 = String.format(cmd2, dbDir,dumpName,Integer.valueOf(port)); -// edu.lu.uni.serval.fixminer.cluster.AkkaTreeLoader.loadRedis(cmd2,"10000"); - cs.runShell(cmd2,serverWait, port); + cs.runShell(cmd2, port); String cmd3; cmd3 = "bash " + importScript +" %s %s"; - JedisPool jedisPool = new JedisPool(poolConfig, "127.0.0.1",Integer.valueOf(portInner),20000000); + JedisPool jedisPool = new JedisPool(PoolBuilder.getPoolConfig(), "127.0.0.1",Integer.valueOf(portInner),20000000); - JedisPool outerPool = new JedisPool(poolConfig, "127.0.0.1",Integer.valueOf(port),20000000); + JedisPool outerPool = new JedisPool(PoolBuilder.getPoolConfig(), "127.0.0.1",Integer.valueOf(port),20000000); @@ -79,8 +78,7 @@ public class MultiThreadTreeLoaderCluster3 { if (size == 0) { String comd = String.format(cmd3, f.getPath(), portInner); cs.runShell(comd); -// edu.lu.uni.serval.fixminer.cluster.MultiThreadTreeLoaderCluster. -// loadRedis(comd); + scan = jedis.scan("0", sc); size = scan.getResult().size(); @@ -103,17 +101,10 @@ public class MultiThreadTreeLoaderCluster3 { String stopServer = "bash "+dbDir + "/" + "stopServer.sh" +" %s"; String stopServer1 = String.format(stopServer,Integer.valueOf(portInner)); -// loadRedis(stopServer2,serverWait); - cs.runShell(stopServer1,serverWait, port); + cs.runShell(stopServer1, port); String stopServer2 = String.format(stopServer,Integer.valueOf(port)); -// loadRedis(stopServer2,serverWait); - cs.runShell(stopServer2,serverWait, port); - - - - -// } + cs.runShell(stopServer2, port); @@ -151,13 +142,13 @@ public class MultiThreadTreeLoaderCluster3 { inner = outerPool.getResource(); String fn = project + "/"+type+"/" + s + ".txt_" + actionSetPosition; String si= inner.get(fn); - HierarchicalActionSet actionSet = (HierarchicalActionSet) fromString(si); + HierarchicalActionSet actionSet = (HierarchicalActionSet) EDiffHelper.fromString(si); ITree parent = null; ITree children =null; TreeContext tc = new TreeContext(); - tree = getASTTree(actionSet, parent, children,tc); + tree = EDiffHelper.getASTTree(actionSet, parent, children,tc); // tree.setParent(null); tc.validate(); @@ -176,46 +167,7 @@ public class MultiThreadTreeLoaderCluster3 { } - public static ITree getASTTree(HierarchicalActionSet actionSet, ITree parent, ITree children,TreeContext tc){ - int newType = 0; - - String astNodeType = actionSet.getAstNodeType(); - - String label = actionSet.getAction().toString(); - List keysByValue = getKeysByValue(ASTNodeMap.map, astNodeType); - - if(keysByValue.size() != 1){ - log.error("Birden cok astnodemapmapping"); - } - newType = keysByValue.get(0); - if(actionSet.getParent() == null){ - //root - -// parent = new Tree(newType,""); - parent = tc.createTree(newType, label, null); - tc.setRoot(parent); - }else{ -// children = new Tree(newType,""); -// parent.addChild(children); - children = tc.createTree(newType, label, null); - children.setParentAndUpdateChildren(parent); - } - List subActions = actionSet.getSubActions(); - if (subActions.size() != 0){ - for (HierarchicalActionSet subAction : subActions) { - - if(actionSet.getParent() == null){ - children = parent; - } - getASTTree(subAction,children,null,tc); - - } - - - } - return parent; - } public static List getNames(ITree oldTree, List oldTokens){ @@ -489,31 +441,6 @@ public class MultiThreadTreeLoaderCluster3 { String firstValue = resultMap.get("0"); String secondValue = resultMap.get("1"); -// if(firstValue.equals("7/0/7af9e0_e674f1_spring-social-web#src#main#java#org#springframework#social#connect#web#ConnectController.txt_0_SOCIAL") || secondValue.equals("7/0/7af9e0_e674f1_spring-social-web#src#main#java#org#springframework#social#connect#web#ConnectController.txt_0_SOCIAL")){ -// log.info(""); -// } - - ///35/1/22b5f7_84bf27_ui#org.eclipse.pde.runtime#src#org#eclipse#pde#internal#runtime#registry#RegistryBrowserLabelProvider.txt_2_PDE - - - -// firstValue = inputPath + firstValue; -// secondValue = inputPath + secondValue; - -// String[] firstValueSplit = firstValue.split("/"); -// String[] secondValueSplit = secondValue.split("/"); -// -// if (firstValueSplit.length == 1) { -// firstValue = inputPath + firstValueSplit[0]; -// } else { -// firstValue = inputPath + firstValueSplit[1]; -// } -// -// if (secondValueSplit.length == 1) { -// secondValue = inputPath + secondValueSplit[0]; -// } else { -// secondValue = inputPath + secondValueSplit[1]; -// } try { ITree oldTree = getTree(firstValue,outerPool,type); @@ -526,30 +453,18 @@ public class MultiThreadTreeLoaderCluster3 { return; } -// ITree oldTree = oldPair.getValue0(); -// ITree newTree = newPair.getValue0(); -// -// String oldProject = oldPair.getValue1(); -// String newProject = newPair.getValue1(); + List oldTokens = new ArrayList<>(); List newTokens = new ArrayList<>(); -// if(secondValue.startsWith("/2/")){ -// log.info("newss"); -// } - // 41 return statement oldTokens = getNames(oldTree,oldTokens); newTokens = getNames(newTree,newTokens); -// if(oldTokens.size() == 0 || newTokens.size() == 0){ -// log.error("Cluster {} has no tokens on pair {}",clusterName , name); -// } -// Matcher m = Matchers.getInstance().getMatcher(oldTree, newTree); -// m.match(); + CharSequence[] oldSequences = oldTokens.toArray(new CharSequence[oldTokens.size()]); CharSequence[] newSequences = newTokens.toArray(new CharSequence[newTokens.size()]); JaroWinklerDistance jwd = new JaroWinklerDistance(); @@ -572,14 +487,7 @@ public class MultiThreadTreeLoaderCluster3 { int retval = Double.compare(overallSimi, Double.valueOf(0.8)); if(retval >= 0){ -// log.info("YES"); -// log.info(name); -// log.info(firstValue); -// log.info(secondValue); -// log.info("************"); -// if(!overallSimi.equals(1.0)){ -// log.info(""); -// } + String matchKey = "match-"+clusterName+"_" + (String.valueOf(i)) + "_" + String.valueOf(j); String result = firstValue + "," + secondValue + ","+String.join(",", oldTokens); jedis.select(1); @@ -705,30 +613,6 @@ public class MultiThreadTreeLoaderCluster3 { - - - static final JedisPoolConfig poolConfig = buildPoolConfig(); - - - private static JedisPoolConfig buildPoolConfig() { - final JedisPoolConfig poolConfig = new JedisPoolConfig(); - poolConfig.setMaxTotal(128); - poolConfig.setMaxIdle(128); - poolConfig.setMinIdle(16); - poolConfig.setTestOnBorrow(true); - poolConfig.setTestOnReturn(true); - poolConfig.setTestWhileIdle(true); - poolConfig.setMinEvictableIdleTimeMillis(Duration.ofMinutes(60).toMillis()); - poolConfig.setTimeBetweenEvictionRunsMillis(Duration.ofHours(30).toMillis()); - poolConfig.setNumTestsPerEvictionRun(3); - poolConfig.setBlockWhenExhausted(true); - - return poolConfig; - } - - - -// return msgFiles; } diff --git a/src/main/java/edu/lu/uni/serval/fixminer/cluster/StoreFile.java b/src/main/java/edu/lu/uni/serval/fixminer/cluster/StoreEDiffInCache.java similarity index 64% rename from src/main/java/edu/lu/uni/serval/fixminer/cluster/StoreFile.java rename to src/main/java/edu/lu/uni/serval/fixminer/cluster/StoreEDiffInCache.java index f6b9eb4..39bba51 100644 --- a/src/main/java/edu/lu/uni/serval/fixminer/cluster/StoreFile.java +++ b/src/main/java/edu/lu/uni/serval/fixminer/cluster/StoreEDiffInCache.java @@ -1,5 +1,7 @@ package edu.lu.uni.serval.fixminer.cluster; +import edu.lu.uni.serval.FixPattern.utils.EDiffHelper; +import edu.lu.uni.serval.FixPattern.utils.PoolBuilder; import edu.lu.uni.serval.gumtree.regroup.HierarchicalActionSet; import org.slf4j.Logger; import org.slf4j.LoggerFactory; @@ -9,50 +11,28 @@ import redis.clients.jedis.JedisPool; import java.io.*; import java.util.ArrayList; import java.util.Arrays; -import java.util.Base64; import java.util.List; import java.util.stream.Collectors; import java.util.stream.Stream; -import static edu.lu.uni.serval.fixminer.cluster.TreeLoaderClusterL1.poolConfig; /** * Created by anilkoyuncu on 03/04/2018. */ -public class StoreFile { +public class StoreEDiffInCache { - private static Logger log = LoggerFactory.getLogger(StoreFile.class); + private static Logger log = LoggerFactory.getLogger(StoreEDiffInCache.class); -// public static void main(String[] args) { - public static void main(String inputPath,String portInner,String serverWait,String dbDir,String chunkName,String operation) throws Exception { -// String inputPath; -// String portInner; -// String serverWait; -// String dbDir; -// String chunkName; -// String numOfWorkers; -// if (args.length > 0) { -// inputPath = args[0]; -// portInner = args[1]; -// serverWait = args[2]; -// chunkName = args[3]; -// numOfWorkers = args[4]; -// dbDir = args[5]; -// } else { -// inputPath = "/Users/anilkoyuncu/bugStudy/dataset/GumTreeOutput2"; -// portInner = "6399"; -// serverWait = "10000"; -// chunkName ="dumps.rdb"; -// dbDir = "/Users/anilkoyuncu/bugStudy/dataset/redis"; -// numOfWorkers = "1"; -// } - String parameters = String.format("\nInput path %s \nportInner %s \nserverWait %s \nchunkName %s \ndbDir %s \noperation %s",inputPath,portInner,serverWait,chunkName,dbDir,operation); + + public static void main(String inputPath,String portInner,String dbDir,String chunkName,String operation) throws Exception { + + String parameters = String.format("\nInput path %s \nportInner %s \nchunkName %s \ndbDir %s \noperation %s",inputPath,portInner,chunkName,dbDir,operation); log.info(parameters); CallShell cs = new CallShell(); String cmd = "bash "+dbDir + "/" + "startServer.sh" +" %s %s %s"; cmd = String.format(cmd, dbDir,chunkName,Integer.valueOf(portInner)); -// loadRedis(cmd,serverWait); - cs.runShell(cmd,serverWait, portInner); + + cs.runShell(cmd, portInner); File folder = new File(inputPath); File[] subFolders = folder.listFiles(); @@ -98,7 +78,7 @@ public class StoreFile { } log.info(String.valueOf(workList.size())); - JedisPool innerPool = new JedisPool(poolConfig, "127.0.0.1",Integer.valueOf(portInner),20000000); + JedisPool innerPool = new JedisPool(PoolBuilder.getPoolConfig(), "127.0.0.1",Integer.valueOf(portInner),20000000); workList.stream().parallel() .forEach(m -> storeCore(innerPool, m.split(",")[1],m.split(",")[0])); @@ -107,10 +87,12 @@ public class StoreFile { String stopServer = "bash "+dbDir + "/" + "stopServer.sh" +" %s"; String stopServer2 = String.format(stopServer,Integer.valueOf(portInner)); -// loadRedis(stopServer2,serverWait); - cs.runShell(stopServer2,serverWait, portInner); + + cs.runShell(stopServer2, portInner); } + + public static void storeCore(JedisPool innerPool,String path,String key){ try { @@ -141,7 +123,7 @@ public class StoreFile { try (Jedis inner = innerPool.getResource()) { - inner.set(key,toString(actionSet)); + inner.set(key, EDiffHelper.toString(actionSet)); } @@ -155,25 +137,7 @@ public class StoreFile { } - /** Read the object from Base64 string. */ - private static Object fromString( String s ) throws IOException , - ClassNotFoundException { - byte [] data = Base64.getDecoder().decode( s ); - ObjectInputStream ois = new ObjectInputStream( - new ByteArrayInputStream( data ) ); - Object o = ois.readObject(); - ois.close(); - return o; - } - /** Write the object to a Base64 string. */ - private static String toString( Serializable o ) throws IOException { - ByteArrayOutputStream baos = new ByteArrayOutputStream(); - ObjectOutputStream oos = new ObjectOutputStream( baos ); - oos.writeObject( o ); - oos.close(); - return Base64.getEncoder().encodeToString(baos.toByteArray()); - } } diff --git a/src/main/java/edu/lu/uni/serval/fixminer/cluster/TreeActor.java b/src/main/java/edu/lu/uni/serval/fixminer/cluster/TreeActor.java index 443d889..939c129 100644 --- a/src/main/java/edu/lu/uni/serval/fixminer/cluster/TreeActor.java +++ b/src/main/java/edu/lu/uni/serval/fixminer/cluster/TreeActor.java @@ -8,13 +8,10 @@ import akka.routing.RoundRobinPool; import edu.lu.uni.serval.fixminer.cluster.akka.TreeMessage; import org.slf4j.Logger; import org.slf4j.LoggerFactory; -import redis.clients.jedis.Jedis; import redis.clients.jedis.JedisPool; import java.util.List; -import static edu.lu.uni.serval.fixminer.cluster.AkkaTreeLoader.loadRedis; - public class TreeActor extends UntypedActor { private static Logger logger = LoggerFactory.getLogger(TreeActor.class); diff --git a/src/main/java/edu/lu/uni/serval/fixminer/cluster/TreeLoaderClusterL1.java b/src/main/java/edu/lu/uni/serval/fixminer/cluster/TreeLoaderClusterL1.java index e7e15b4..36a480a 100644 --- a/src/main/java/edu/lu/uni/serval/fixminer/cluster/TreeLoaderClusterL1.java +++ b/src/main/java/edu/lu/uni/serval/fixminer/cluster/TreeLoaderClusterL1.java @@ -1,11 +1,14 @@ package edu.lu.uni.serval.fixminer.cluster; +import edu.lu.uni.serval.FixPattern.utils.PoolBuilder; import org.slf4j.Logger; import org.slf4j.LoggerFactory; -import redis.clients.jedis.*; +import redis.clients.jedis.Jedis; +import redis.clients.jedis.JedisPool; +import redis.clients.jedis.ScanParams; +import redis.clients.jedis.ScanResult; import java.io.File; -import java.time.Duration; import java.util.Arrays; import java.util.List; import java.util.stream.Collectors; @@ -18,19 +21,19 @@ public class TreeLoaderClusterL1 { private static Logger log = LoggerFactory.getLogger(TreeLoaderClusterL1.class); - public static void main(String portInner,String serverWait,String port,String inputPath,String level1DB,String level1Path,String innerTypePrefix) throws Exception { + public static void main(String portInner,String port,String inputPath,String level1DB,String level1Path,String innerTypePrefix) throws Exception { - String parameters = String.format("\nInput path %s \nportInner %s \nserverWait %s \nport %s",inputPath,portInner,serverWait,port); + String parameters = String.format("\nInput path %s \nportInner %s \nport %s",inputPath,portInner,port); log.info(parameters); String cmd = "bash "+inputPath + "/" + "startServer.sh" +" %s %s %s"; cmd = String.format(cmd, inputPath,level1DB,Integer.valueOf(port)); CallShell cs = new CallShell(); - cs.runShell(cmd,serverWait, port); - JedisPool outerPool = new JedisPool(poolConfig, "127.0.0.1",Integer.valueOf(port),20000000); + cs.runShell(cmd, port); + JedisPool outerPool = new JedisPool(PoolBuilder.getPoolConfig(), "127.0.0.1",Integer.valueOf(port),20000000); File chunks = new File(level1Path); @@ -44,8 +47,8 @@ public class TreeLoaderClusterL1 { String cmdInner = "bash "+inputPath + "/" + "startServer.sh" +" %s %s %s"; cmdInner = String.format(cmdInner, inputPath,db.getName(),Integer.valueOf(portInner)); - cs.runShell(cmdInner,serverWait, port); - JedisPool innerPool = new JedisPool(poolConfig, "127.0.0.1",Integer.valueOf(portInner),20000000); + cs.runShell(cmdInner, port); + JedisPool innerPool = new JedisPool(PoolBuilder.getPoolConfig(), "127.0.0.1",Integer.valueOf(portInner),20000000); Jedis inner = null; @@ -97,38 +100,21 @@ public class TreeLoaderClusterL1 { String stopServer = "bash "+inputPath + "/" + "stopServer.sh" +" %s"; stopServer = String.format(stopServer,Integer.valueOf(portInner)); -// loadRedis(stopServer,serverWait); - cs.runShell(stopServer,serverWait, port); + + cs.runShell(stopServer, port); } String stopServer1 = "bash "+inputPath + "/" + "stopServer.sh" +" %s"; stopServer1 = String.format(stopServer1,Integer.valueOf(port)); -// loadRedis(stopServer,serverWait); - cs.runShell(stopServer1,serverWait, port); + + cs.runShell(stopServer1, port); } - static final JedisPoolConfig poolConfig = buildPoolConfig(); - private static JedisPoolConfig buildPoolConfig() { - final JedisPoolConfig poolConfig = new JedisPoolConfig(); - poolConfig.setMaxTotal(128); - poolConfig.setMaxIdle(128); - poolConfig.setMinIdle(16); - poolConfig.setTestOnBorrow(true); - poolConfig.setTestOnReturn(true); - poolConfig.setTestWhileIdle(true); - poolConfig.setMinEvictableIdleTimeMillis(Duration.ofMinutes(60).toMillis()); - poolConfig.setTimeBetweenEvictionRunsMillis(Duration.ofHours(30).toMillis()); - poolConfig.setNumTestsPerEvictionRun(3); - poolConfig.setBlockWhenExhausted(true); - - return poolConfig; - } - } diff --git a/src/main/java/edu/lu/uni/serval/fixminer/cluster/TreeWorker.java b/src/main/java/edu/lu/uni/serval/fixminer/cluster/TreeWorker.java index 4c0e6a0..cfc7bb9 100644 --- a/src/main/java/edu/lu/uni/serval/fixminer/cluster/TreeWorker.java +++ b/src/main/java/edu/lu/uni/serval/fixminer/cluster/TreeWorker.java @@ -8,14 +8,10 @@ import edu.lu.uni.serval.fixminer.cluster.akka.TreeMessage; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import redis.clients.jedis.JedisPool; -import redis.clients.jedis.JedisPoolConfig; -import java.time.Duration; import java.util.List; import java.util.concurrent.*; -import static edu.lu.uni.serval.fixminer.cluster.AkkaTreeLoader.poolConfig; - public class TreeWorker extends UntypedActor { private static Logger log = LoggerFactory.getLogger(TreeWorker.class); diff --git a/src/main/java/edu/lu/uni/serval/gumtree/regroup/ActionFilter.java b/src/main/java/edu/lu/uni/serval/gumtree/regroup/ActionFilter.java deleted file mode 100644 index c8a1ce9..0000000 --- a/src/main/java/edu/lu/uni/serval/gumtree/regroup/ActionFilter.java +++ /dev/null @@ -1,254 +0,0 @@ -package edu.lu.uni.serval.gumtree.regroup; - -import java.util.ArrayList; -import java.util.List; - -public class ActionFilter { - - private List methodNames = new ArrayList<>(); - private List variableNames = new ArrayList<>(); - - /** - * Filter out the modify actions of changing method names, method parameters, variable names and field names in declaration part. - * - * @param actionSets - * @return - */ - public List filterOutUselessActions(List actionSets) { - // Filter out modifications of variable names and method names. - List uselessActions = findoutUselessActions(actionSets); - actionSets.removeAll(uselessActions); - uselessActions.clear(); - - // Filter out non-UPD modifications, and modifications of variable names and method names. - uselessActions = findoutUselessActionSets(actionSets, true); - actionSets.removeAll(uselessActions); - uselessActions.clear(); - return actionSets; - } - - private List findoutUselessActionSets(List actionSets, boolean isRoot) { - List uselessActions = new ArrayList<>(); - - FindActionSet: { - for (HierarchicalActionSet actionSet : actionSets) { - if (!isRoot) { - String actionStr = actionSet.getActionString(); - if (actionStr.startsWith("UPD MethodInvocation") || actionStr.startsWith("INS MethodInvocation") || actionStr.startsWith("DEL MethodInvocation")) { - String label = actionSet.getAction().getNode().getLabel(); - for (String methodName : methodNames) { - if (actionSet.getActionString().startsWith("UPD MethodInvocation@@" + methodName + "(") - || actionSet.getActionString().startsWith("INS MethodInvocation@@" + methodName + "(") - || actionSet.getActionString().startsWith("DEL MethodInvocation@@" + methodName + "(") - || label.contains("." + methodName + "(")) { - addToUselessActions(actionSet, uselessActions); - break FindActionSet; - } - } - } else if (actionStr.startsWith("UPD SimpleName") || actionStr.startsWith("INS SimpleName") || actionStr.startsWith("DEL SimpleName")) { - String label = actionSet.getAction().getNode().getLabel(); - for (String variableName : variableNames) { - if (label.equals(variableName) || label.equals("Name:" + variableName)) { - addToUselessActions(actionSet, uselessActions); - break FindActionSet; - } - } - } else if (actionStr.startsWith("UPD StringLiteral") || actionStr.startsWith("INS StringLiteral") - || actionStr.startsWith("DEL StringLiteral") || actionStr.startsWith("MOV StringLiteral") - || actionStr.startsWith("UPD CharacterLiteral") || actionStr.startsWith("INS CharacterLiteral") - || actionStr.startsWith("DEL CharacterLiteral") || actionStr.startsWith("MOV CharacterLiteral")) { - addToUselessActions(actionSet, uselessActions); - break FindActionSet; - } - - List uselessActionSets = findoutUselessActionSets(actionSet.getSubActions(), false); - if (uselessActionSets.size() > 0) { - uselessActions.addAll(uselessActionSets); - break; - } - } else { - if (actionSet.getAstNodeType().endsWith("Statement") || "FieldDeclaration".equals(actionSet.getAstNodeType())) { - uselessActions.addAll(findoutUselessActionSets(actionSet.getSubActions(), false)); - } else { - uselessActions.add(actionSet); - } - } - } - } - - return uselessActions; - } - - private void addToUselessActions(HierarchicalActionSet actionSet, List uselessActions) { - while (actionSet.getParent() != null) { - actionSet = actionSet.getParent(); - } - if (!uselessActions.contains(actionSet)) { - uselessActions.add(actionSet); - } - } - - /** - * Identify the the modify actions of changing method names, method parameters, variable names and field names in declaration part. - * - * @param actionSets - * @return - */ - private List findoutUselessActions(List actionSets) { - List uselessActions = new ArrayList<>(); - - for (HierarchicalActionSet actionSet : actionSets) { - String actionType = actionSet.getAstNodeType(); - if (actionType.equals("MethodDeclaration")) { - addToUselessActions(actionSet, uselessActions);// INS, DEL: useful?, UPD, except the modifier actions - if (!actionSet.getActionString().startsWith("MOV ")) { - String label = actionSet.getNode().getLabel(); - String methodName = label.substring(label.indexOf("MethodName:")); - methodName = methodName.substring(11, methodName.indexOf(",")); - methodNames.add(methodName); // "MethodName:***" - - // UPD, DEL, INS parameters. - List subActionSets = actionSet.getSubActions(); - for (HierarchicalActionSet subActionSet : subActionSets) { - if (subActionSet.getAstNodeType().equals("SingleVariableDeclaration")) { - List subActionSets2 = subActionSet.getSubActions(); // - if (subActionSets2.size() == 0) { - String actSetStr = subActionSet.getActionString(); - int index1 = actSetStr.indexOf("@@"); - int index2 = 0; - if (actSetStr.startsWith("DEL")) { - index2 = actSetStr.indexOf("@AT@"); - } else { - index2 = actSetStr.indexOf("@TO@");; - } - actSetStr = actSetStr.substring(index1, index2).trim(); - String variableName = actSetStr.substring(actSetStr.lastIndexOf(" ")); - variableNames.add(variableName); // "SimpleName:" + variableName TODO: effect range - } else { - HierarchicalActionSet actSet = subActionSets2.get(subActionSets2.size() - 1); - String actStr = actSet.getActionString(); - if (actStr.startsWith("UPD SimpleName") || actStr.startsWith("INS SimpleName") || actStr.startsWith("DEL SimpleName")) { - String variableName = actSet.getNode().getLabel(); - variableNames.add(variableName); // "SimpleName:" + variableName TODO: effect range - } - } - } - } - } - } else if (actionType.equals("FieldDeclaration") || actionType.equals("VariableDeclarationStatement")) { - // UPD VariableDeclarationFragment - if (!actionSet.getActionString().startsWith("MOV ")) { - List subActionSets = actionSet.getSubActions(); - if (subActionSets.size() > 0) { - for (HierarchicalActionSet subActionSet : subActionSets) { // VariableDeclarationFragments - if (identifyUpdateVDF(subActionSet)) { - addToUselessActions(actionSet, uselessActions); - } - } - } - } - } else if (actionType.equals("TryStatement")) { - if (actionSet.getActionString().startsWith("UPD ")) { - List subActionSets = actionSet.getSubActions(); - if (subActionSets.size() > 0) { - for (HierarchicalActionSet subActionSet : subActionSets) { - if (subActionSet.getActionString().startsWith("UPD VariableDeclarationExpression")) { - List subActionSets2 = subActionSet.getSubActions(); // VariableDeclarationFragments - for (HierarchicalActionSet subActionSet2 : subActionSets2) { - if (identifyUpdateVDF(subActionSet2)) { - addToUselessActions(actionSet, uselessActions); - } - } - } else { - break; - } - } - } - } - } else if (actionType.equals("EnhancedForStatement")) { // SingleVariableDeclaration - if (!actionSet.getActionString().startsWith("MOV ")) { - List subActionSets = actionSet.getSubActions(); - if (subActionSets.size() > 0) { - HierarchicalActionSet subActionSet = subActionSets.get(0); - if (subActionSet.getActionString().startsWith("UPD SingleVariableDeclaration")) { - List subActionSets2 = subActionSet.getSubActions(); - for (HierarchicalActionSet subActionSet2 : subActionSets2) { // Type or Identifier - if (subActionSet2.getActionString().startsWith("UPD SimpleName")) { - String variableName = subActionSet2.getNode().getLabel(); - variableNames.add(variableName); // "SimpleName:" + variableName TODO: effect range - addToUselessActions(actionSet, uselessActions); - } - } - } - } - } - } else if (actionType.equals("SingleVariableDeclaration")) { - if (!actionSet.getActionString().startsWith("MOV ")) { - List subActionSets2 = actionSet.getSubActions(); // - if (subActionSets2.size() == 0) { - String actSetStr = actionSet.getActionString(); - int index1 = actSetStr.indexOf("@@"); - int index2 = 0; - if (actSetStr.startsWith("DEL")) { - index2 = actSetStr.indexOf("@AT@"); - } else { - index2 = actSetStr.indexOf("@TO@");; - } - actSetStr = actSetStr.substring(index1, index2).trim(); - String variableName = actSetStr.substring(actSetStr.lastIndexOf(" ")); - variableNames.add(variableName); // "SimpleName:" + variableName TODO: effect range - addToUselessActions(actionSet, uselessActions); - } else { - HierarchicalActionSet actSet = subActionSets2.get(subActionSets2.size() - 1); - String actStr = actSet.getActionString(); - if (actStr.startsWith("UPD SimpleName") || actStr.startsWith("INS SimpleName") || actStr.startsWith("DEL SimpleName")) { - String variableName = actSet.getNode().getLabel(); - variableNames.add(variableName); // "SimpleName:" + variableName TODO: effect range - addToUselessActions(actionSet, uselessActions); - } - } - } - } else { - if (actionSet.getParent() != null) { - while (actionSet.getParent() != null) { - actionSet = actionSet.getParent(); - } - if (uselessActions.contains(actionSet)) { - return uselessActions; - } else { - uselessActions.addAll(findoutUselessActions(actionSet.getSubActions())); - } - } - } - } - return uselessActions; - } - - /** - * Identify the AST node of this ActionSet is VariableDeclarationFragment or not. - * And, whether the action is happened on the Variable name or not. - * - * @param actionSet - */ - private boolean identifyUpdateVDF(HierarchicalActionSet actionSet) { - String actStr = actionSet.getActionString(); - if (actStr.startsWith("UPD VariableDeclarationFragment") - || actStr.startsWith("INS VariableDeclarationFragment") - || actStr.startsWith("DEL VariableDeclarationFragment")) { - List subActionSets = actionSet.getSubActions(); - if (subActionSets == null || subActionSets.size() == 0) { - // modification of Dimension - return true; - } - HierarchicalActionSet actSet = subActionSets.get(0); - String actSetStr = actSet.getActionString(); - if (actSetStr.startsWith("UPD SimpleName") || actSetStr.startsWith("INS SimpleName") || actSetStr.startsWith("DEL SimpleName")) { - String variableName = actSet.getNode().getLabel(); - variableNames.add(variableName); // "SimpleName:" + variableName TODO: effect range - return true; - } - } - return false; - } - -} diff --git a/src/main/java/edu/lu/uni/serval/gumtree/regroup/HierarchicalActionSet.java b/src/main/java/edu/lu/uni/serval/gumtree/regroup/HierarchicalActionSet.java index 1bff3ac..4b5fb60 100644 --- a/src/main/java/edu/lu/uni/serval/gumtree/regroup/HierarchicalActionSet.java +++ b/src/main/java/edu/lu/uni/serval/gumtree/regroup/HierarchicalActionSet.java @@ -1,12 +1,12 @@ package edu.lu.uni.serval.gumtree.regroup; +import com.github.gumtreediff.actions.model.Action; +import com.github.gumtreediff.tree.ITree; + import java.io.Serializable; import java.util.ArrayList; import java.util.List; -import com.github.gumtreediff.actions.model.Action; -import com.github.gumtreediff.tree.ITree; - /** * Hierarchical-level results of GumTree results * @@ -29,11 +29,16 @@ public class HierarchicalActionSet implements Comparable, private List subActions = new ArrayList<>(); private ITree node; - private SimpleTree abstractSimpleTree = null; // semi-source code tree. and AST node type tree - private SimpleTree abstractIdentifierTree = null; // abstract identifier tree - private SimpleTree simpleTree = null; // source code tree and AST node type tree - private SimpleTree originalTree = null; // source code tree. - + // source code tree. + + public int getBugEndPosition() { + return bugEndPosition; + } + + public int getFixEndPosition() { + return fixEndPosition; + } + private int bugEndPosition; private int fixEndPosition; @@ -147,49 +152,12 @@ public class HierarchicalActionSet implements Comparable, this.subActions = subActions; } - public SimpleTree getAbstractSimpleTree() { - return abstractSimpleTree; - } - - public void setAbstractSimpleTree(SimpleTree simpleTree) { - this.abstractSimpleTree = simpleTree; - } - - public SimpleTree getAbstractIdentifierTree() { - return abstractIdentifierTree; - } - - public void setAbstractIdentifierTree(SimpleTree abstractIdentifierTree) { - this.abstractIdentifierTree = abstractIdentifierTree; - } - - public SimpleTree getSimpleTree() { - return simpleTree; - } - - public void setSimpleTree(SimpleTree rawTokenTree) { - this.simpleTree = rawTokenTree; - } - - public SimpleTree getOriginalTree() { - return originalTree; - } - - public void setOriginalTree(SimpleTree originalTree) { - this.originalTree = originalTree; - } - - public int getBugEndPosition() { - return bugEndPosition; - } public void setBugEndPosition(int bugEndPosition) { this.bugEndPosition = bugEndPosition; } - public int getFixEndPosition() { - return fixEndPosition; - } + public void setFixEndPosition(int fixEndPosition) { this.fixEndPosition = fixEndPosition; @@ -197,10 +165,7 @@ public class HierarchicalActionSet implements Comparable, @Override public int compareTo(HierarchicalActionSet o) { -// int result = this.startPosition.compareTo(o.startPosition); -// if (result == 0) { -// result = this.length >= o.length ? -1 : 1; -// } + return this.startPosition.compareTo(o.startPosition);//this.action.compareTo(o.action); } @@ -238,28 +203,5 @@ public class HierarchicalActionSet implements Comparable, return str; } - public String toASTNodeLevelAction() { - if (strList.size() == 0) { - toString(); - } - String astNodeStr = ""; - for (String str : strList) { - astNodeStr += str.substring(0, str.indexOf("@@")) + "\n"; - } - return astNodeStr; - } - - public String toRawCodeLevelAction() { - if (strList.size() == 0) { - toString(); - } - String astNodeStr = ""; - for (String str : strList) { - str = str.substring(0, str.indexOf(" @AT@")) + "\n"; - int index1 = str.indexOf(" ") + 1; - int index2 = str.indexOf("@@") + 2; - astNodeStr += str.substring(0, index1) + str.substring(index2); - } - return astNodeStr; - } + } diff --git a/src/main/java/edu/lu/uni/serval/gumtree/regroup/HierarchicalRegrouper.java b/src/main/java/edu/lu/uni/serval/gumtree/regroup/HierarchicalRegrouper.java index c00f09e..db1e1db 100644 --- a/src/main/java/edu/lu/uni/serval/gumtree/regroup/HierarchicalRegrouper.java +++ b/src/main/java/edu/lu/uni/serval/gumtree/regroup/HierarchicalRegrouper.java @@ -1,22 +1,13 @@ package edu.lu.uni.serval.gumtree.regroup; -import java.io.File; +import com.github.gumtreediff.actions.model.*; +import com.github.gumtreediff.tree.ITree; +import edu.lu.uni.serval.FixPattern.utils.ASTNodeMap; +import edu.lu.uni.serval.utils.ListSorter; + import java.util.ArrayList; import java.util.List; -import com.github.gumtreediff.actions.model.Action; -import com.github.gumtreediff.actions.model.Addition; -import com.github.gumtreediff.actions.model.Delete; -import com.github.gumtreediff.actions.model.Insert; -import com.github.gumtreediff.actions.model.Move; -import com.github.gumtreediff.actions.model.Update; -import com.github.gumtreediff.tree.ITree; - -import edu.lu.uni.serval.FixPattern.utils.ASTNodeMap; -import edu.lu.uni.serval.FixPattern.utils.Checker; -import edu.lu.uni.serval.gumtree.GumTreeComparer; -import edu.lu.uni.serval.utils.ListSorter; - /** * Regroup GumTree results to a hierarchical construction. * @@ -209,11 +200,6 @@ public class HierarchicalRegrouper { } -// } else if (parent.getType() == 31) { // method declaration -// int type = action.getNode().getType(); -// if (Checker.isStatement(type)) {// statements -// return null; -// } } for (Action act : actions) { diff --git a/src/main/java/edu/lu/uni/serval/gumtree/regroup/HierarchicalRegrouperForC.java b/src/main/java/edu/lu/uni/serval/gumtree/regroup/HierarchicalRegrouperForC.java deleted file mode 100644 index 23df400..0000000 --- a/src/main/java/edu/lu/uni/serval/gumtree/regroup/HierarchicalRegrouperForC.java +++ /dev/null @@ -1,300 +0,0 @@ -package edu.lu.uni.serval.gumtree.regroup; - -import java.util.ArrayList; -import java.util.List; - -import com.github.gumtreediff.actions.model.Action; -import com.github.gumtreediff.actions.model.Addition; -import com.github.gumtreediff.actions.model.Delete; -import com.github.gumtreediff.actions.model.Insert; -import com.github.gumtreediff.actions.model.Move; -import com.github.gumtreediff.actions.model.Update; -import com.github.gumtreediff.tree.ITree; - -import edu.lu.uni.serval.FixPattern.utils.CNodeMap; -import edu.lu.uni.serval.utils.ListSorter; - -/** - * Regroup GumTree results to a hierarchical construction. - * - * @author kui.liu - * - */ -public class HierarchicalRegrouperForC { - -// public static void main(String[] args) { -// GumTreeComparer com = new GumTreeComparer(); -// File cFile1 = new File("/Users/anilkoyuncu/bugStudy/dataset/GumTreeInput/linux-stable/prevFiles/prev_0a3d00_b404bc_drivers#pci#iov.c"); -// File cFile2 = new File("/Users/anilkoyuncu/bugStudy/dataset/GumTreeInput/linux-stable/revFiles/0a3d00_b404bc_drivers#pci#iov.c"); -// List action = com.compareTwoFilesWithGumTreeForCCode(cFile1, cFile2); -// List actionSet = new HierarchicalRegrouperForC().regroupGumTreeResults(action); -// System.out.println(actionSet); -// } - - List actionSets = new ArrayList<>(); - - public List regroupGumTreeResults(List actions) { - /* - * First, sort actions by their positions. - */ -// List actions = new ListSorter(actionsArgu).sortAscending(); -// if (actions == null) { -// actions = actionsArgu; -// } - - /* - * Second, group actions by their positions. - */ - HierarchicalActionSet actionSet = null; - for(Action act : actions){ - Action parentAct = findParentAction(act, actions); - - if (parentAct == null) { - actionSet = createActionSet(act, parentAct, null); - actionSets.add(actionSet); - } else { - if (!addToAactionSet(act, parentAct, actionSets)) { - // The index of the parent action in the actions' list is larger than the index of this action. - actionSet = createActionSet(act, parentAct, null); - actionSets.add(actionSet); - } - } - } - - /* - * Third, add the subActionSet to its parent ActionSet. - */ - List reActionSets = new ArrayList<>(); - for (HierarchicalActionSet actSet : actionSets) { - Action parentAct = actSet.getParentAction(); - if (parentAct != null) { - addToActionSets(actSet, parentAct, actionSets); - } else { - // TypeDeclaration, FieldDeclaration, MethodDeclaration, Statement. - // CatchClause, ConstructorInvocation, SuperConstructorInvocation, SwitchCase -// String astNodeType = actSet.getAstNodeType(); -// if (astNodeType.endsWith("TypeDeclaration") || astNodeType.endsWith("FieldDeclaration") || astNodeType.endsWith("EnumDeclaration") || -// astNodeType.endsWith("MethodDeclaration") || astNodeType.endsWith("Statement") || -// astNodeType.endsWith("ConstructorInvocation") || astNodeType.endsWith("CatchClause") || astNodeType.endsWith("SwitchCase")) { - reActionSets.add(actSet); -// } - } - } - return reActionSets; - } - - private HierarchicalActionSet createActionSet(Action act, Action parentAct, HierarchicalActionSet parent) { - HierarchicalActionSet actionSet = new HierarchicalActionSet(); - actionSet.setAction(act); - String actStr = parseAction(act.toString()); - actionSet.setActionString(actStr); - actionSet.setParentAction(parentAct); - actionSet.setNode(act.getNode()); - actionSet.setParent(parent); - - int bugStartLineNum = 0; - int bugEndLineNum = 0; - int fixStartLineNum = 0; - int fixEndLineNum = 0; - if (actStr.startsWith("INS")) { - Insert insert = (Insert) act; -// int pos = insert.getPos();//index position of the new node in the children array list of its corresponding old parent node. - ITree newTree = insert.getNode(); - fixStartLineNum = newTree.getPos(); - fixEndLineNum = newTree.getLength(); - } else { - ITree tree = act.getNode(); - bugStartLineNum = tree.getPos(); - bugEndLineNum = tree.getLength(); - if (actStr.startsWith("UPD")) { - Update update = (Update) act; - ITree newTree = update.getNewNode(); - fixStartLineNum = newTree.getPos(); - fixEndLineNum = newTree.getLength(); - } else if (actStr.startsWith("MOV")) { - Move update = (Move) act; - ITree newTree = update.getNewNode(); - fixStartLineNum = newTree.getPos(); - fixEndLineNum = newTree.getLength(); - } - } - actionSet.setBugStartLineNum(bugStartLineNum); - actionSet.setBugEndLineNum(bugEndLineNum); - actionSet.setFixStartLineNum(fixStartLineNum); - actionSet.setFixEndLineNum(fixEndLineNum); - return actionSet; - } - - private String parseAction(String actStr1) { - // UPD 25@@!a from !a to isTrue(a) at 69 - String[] actStrArrays = actStr1.split("@@"); - String actStr = ""; - int length = actStrArrays.length; - for (int i =0; i < length - 1; i ++) { - String actStrFrag = actStrArrays[i]; - int index = actStrFrag.lastIndexOf(" ") + 1; - String nodeType = actStrFrag.substring(index); - if (!"".equals(nodeType)) { - if (Character.isDigit(nodeType.charAt(0)) || (nodeType.startsWith("-") && Character.isDigit(nodeType.charAt(1)))) { - try { - int typeInt = Integer.parseInt(nodeType); - if (CNodeMap.map.containsKey(typeInt)) { - String type = CNodeMap.map.get(Integer.parseInt(nodeType)); - nodeType = type; - } - } catch (NumberFormatException e) { - nodeType = actStrFrag.substring(index); - } - } - } - actStrFrag = actStrFrag.substring(0, index) + nodeType + "@@"; - actStr += actStrFrag; - } - actStr += actStrArrays[length - 1]; - return actStr; - } - - private void addToActionSets(HierarchicalActionSet actionSet, Action parentAct, List actionSets) { - Action act = actionSet.getAction(); - for (HierarchicalActionSet actSet : actionSets) { - if (actSet.equals(actionSet)) continue; - Action action = actSet.getAction(); - - if (!areRelatedActions(action, act)) continue; - if (action.equals(parentAct)) { // actSet is the parent of actionSet. - actionSet.setParent(actSet); - actSet.getSubActions().add(actionSet); - sortSubActions(actSet); - break; - } else { - if (isPossibileSubAction(action, act)) { - // SubAction range： startPosition2 <= startPosition && length <= length2 - addToActionSets(actionSet, parentAct, actSet.getSubActions()); - } - } - } - } - - private boolean isPossibileSubAction(Action parent, Action child) { - if ((parent instanceof Update && !(child instanceof Addition)) - || (parent instanceof Delete && child instanceof Delete) - || (parent instanceof Insert && (child instanceof Insert))) { - int startPosition = child.getPosition(); - int length = child.getLength(); - int startPosition2 = parent.getPosition(); - int length2 = parent.getLength(); - - if (!(startPosition2 <= startPosition && length <= length2)) { - // when act is not the sub-set of action. - return false; - } - } - return true; - } - - private void sortSubActions(HierarchicalActionSet actionSet) { - ListSorter sorter = new ListSorter(actionSet.getSubActions()); - List subActions = sorter.sortAscending(); - if (subActions != null) { - actionSet.setSubActions(subActions); - } - } - - private boolean addToAactionSet(Action act, Action parentAct, List actionSets) { - for(HierarchicalActionSet actionSet : actionSets) { - Action action = actionSet.getAction(); - - if (!areRelatedActions(action, act)) continue; - - if (action.equals(parentAct)) { // actionSet is the parent of actSet. - HierarchicalActionSet actSet = createActionSet(act, actionSet.getAction(), actionSet); - actionSet.getSubActions().add(actSet); - sortSubActions(actionSet); - return true; - } else { - if (isPossibileSubAction(action, act)) { - // SubAction range: startPosition2 <= startPosition && startPosition + length <= startP + length2 - List subActionSets = actionSet.getSubActions(); - if (subActionSets.size() > 0) { - boolean added = addToAactionSet(act, parentAct, subActionSets); - if (added) { - return true; - } else { - continue; - } - } - } - } - } - return false; - } - - List newParentActions = new ArrayList<>(); - private Action findParentAction(Action action, List actions) { - - ITree parent = action.getNode().getParent(); - if (parent == null) return null; - if (action instanceof Addition) { - parent = ((Addition) action).getParent(); // parent in the fixed source code tree - } - - for (Action act : actions) { - if (act.getNode().equals(parent)) { - if (areRelatedActions(act, action)) { - return act; - } - } - } - for (Action act : newParentActions) { - if (act.getNode().equals(parent)) { - if (areRelatedActions(act, action)) { - return act; - } - } - } - - ITree tree = action.getNode(); - Action parentAction = null; - if (!isStatement(tree)) { - parentAction = new Update(parent, action.getNode().getParent()); - newParentActions.add(parentAction); - - Action higherParentAct = findParentAction(parentAction, actions); - HierarchicalActionSet actionSet = null; - if (higherParentAct == null) { - actionSet = createActionSet(parentAction, higherParentAct, null); - actionSets.add(actionSet); - } else { - if (!addToAactionSet(parentAction, higherParentAct, actionSets)) { - // The index of the parent action in the actions' list is larger than the index of this action. - actionSet = createActionSet(parentAction, higherParentAct, null); - actionSets.add(actionSet); - } - } - } - return parentAction; - } - - private boolean isStatement(ITree tree) { - int nodeType = tree.getType(); - if (nodeType == 280002 || nodeType == 280001 || nodeType == 310200 || nodeType == 280100 - || nodeType == 300100 || nodeType == 280003 || nodeType == 310100 || nodeType == 310300 - || 260300 == nodeType || nodeType == 460000) {// TODO - return true; - } - return false; - } - - private boolean areRelatedActions(Action parent, Action child) { - if (parent instanceof Move && !(child instanceof Move)) {// If action is MOV, its children must be MOV. - return false; - } - if (parent instanceof Delete && !(child instanceof Delete)) {// If action is DEL, its children must be DEL. - return false; - } - if (parent instanceof Insert && !(child instanceof Addition)) {// If action is INS, its children must be MOV or INS. - return false; - } - return true; - } -} diff --git a/src/main/java/edu/lu/uni/serval/gumtree/regroup/HunkActionFilter.java b/src/main/java/edu/lu/uni/serval/gumtree/regroup/HunkActionFilter.java deleted file mode 100644 index f986f33..0000000 --- a/src/main/java/edu/lu/uni/serval/gumtree/regroup/HunkActionFilter.java +++ /dev/null @@ -1,625 +0,0 @@ -package edu.lu.uni.serval.gumtree.regroup; - -import java.io.File; -import java.util.ArrayList; -import java.util.List; - -import org.eclipse.jdt.core.dom.CompilationUnit; - -import com.github.gumtreediff.actions.model.Move; -import com.github.gumtreediff.actions.model.Update; -import com.github.gumtreediff.tree.ITree; - -import edu.lu.uni.serval.FixPattern.utils.Checker; -import edu.lu.uni.serval.FixPatternParser.CUCreator; -import edu.lu.uni.serval.FixPatternParser.violations.Violation; -import edu.lu.uni.serval.diffentry.DiffEntryHunk; - -public class HunkActionFilter { - - /** - * Filter out the modify actions, which are not in the DiffEntry hunks, without considering the same parent node. - * - * @param hunks - * @param actionSets - * @return - */ - public List filterActionsByDiffEntryHunk(List hunks, - List actionSets, File revFile, File prevFile) { - List uselessActions = new ArrayList<>(); - - CUCreator cuCreator = new CUCreator(); - CompilationUnit prevUnit = cuCreator.createCompilationUnit(prevFile); - CompilationUnit revUnit = cuCreator.createCompilationUnit(revFile); - if (prevUnit == null || revUnit == null) { - return uselessActions; - } - - for (HierarchicalActionSet actionSet : actionSets) { - // position of buggy statements - int startPosition = 0; - int endPosition = 0; - int startLine = 0; - int endLine = 0; - // position of fixed statements - int startPosition2 = 0; - int endPosition2 = 0; - int startLine2 = 0; - int endLine2 = 0; - - String actionStr = actionSet.getActionString(); - if (actionStr.startsWith("INS")) { - startPosition2 = actionSet.getStartPosition(); - endPosition2 = startPosition2 + actionSet.getLength(); - - List firstAndLastMov = getFirstAndLastMoveAction(actionSet); - if (firstAndLastMov != null) { - startPosition = firstAndLastMov.get(0).getNode().getPos(); - ITree lastTree = firstAndLastMov.get(1).getNode(); - endPosition = lastTree.getPos() + lastTree.getLength(); - } - } else { - startPosition = actionSet.getStartPosition(); // range of actions - endPosition = startPosition + actionSet.getLength(); - if (actionStr.startsWith("UPD")) { - Update update = (Update) actionSet.getAction(); - ITree newNode = update.getNewNode(); - startPosition2 = newNode.getPos(); - endPosition2 = startPosition2 + newNode.getLength(); - } - } - startLine = startPosition == 0 ? 0 : prevUnit.getLineNumber(startPosition); - endLine = endPosition == 0 ? 0 : prevUnit.getLineNumber(endPosition); - startLine2 = startPosition2 == 0 ? 0 : revUnit.getLineNumber(startPosition2); - endLine2 = endPosition2 == 0 ? 0 : revUnit.getLineNumber(endPosition2); - - for (DiffEntryHunk hunk : hunks) { - int bugStartLine = hunk.getBugLineStartNum(); - int bugRange = hunk.getBugRange(); - int fixStartLine = hunk.getFixLineStartNum(); - int fixRange = hunk.getFixRange(); - - if (actionStr.startsWith("INS")) { - if (fixStartLine + fixRange < startLine2) { - continue; - } - if (endLine2 < fixStartLine ) { - uselessActions.add(actionSet); - } - } else { - if (bugStartLine + bugRange < startLine) { - continue; - } - if (endLine < bugStartLine ) { - uselessActions.add(actionSet); - } - break; - } - } - actionSet.setBugStartLineNum(startLine); - actionSet.setBugEndLineNum(endLine); - actionSet.setFixStartLineNum(startLine2); - actionSet.setFixEndLineNum(endLine2); - } - - actionSets.removeAll(uselessActions); - uselessActions.clear(); - return actionSets; - } - - /** - * Filter out the modify actions, which are not in the DiffEntry hunks, with considering the same parent node. - * - * @param hunks - * @param actionSets - * @return - */ - public List filterActionsByDiffEntryHunk2(List hunks, - List actionSets, File revFile, File prevFile) { - List allHunkFixPatterns = new ArrayList<>(); - - CUCreator cuCreator = new CUCreator(); - CompilationUnit prevUnit = cuCreator.createCompilationUnit(prevFile); - CompilationUnit revUnit = cuCreator.createCompilationUnit(revFile); - if (prevUnit == null || revUnit == null) { - return allHunkFixPatterns; - } - - int i = 0; - int size = actionSets.size(); - for (DiffEntryHunk hunk : hunks) { - int hunkBugStartLine = hunk.getBugLineStartNum(); - int hunkBugRange = hunk.getBugRange(); - int hunkFixStartLine = hunk.getFixLineStartNum(); - int hunkFixRange = hunk.getFixRange(); - - for (; i < size; i ++) { - HierarchicalActionSet actionSet = actionSets.get(i); - int actionBugStartLine = actionSet.getBugStartLineNum(); - if (actionBugStartLine == 0) { - actionBugStartLine = setLineNumbers(actionSet, prevUnit, revUnit); - } - int actionBugEndLine = actionSet.getBugEndLineNum(); - int actionFixStartLine = actionSet.getFixStartLineNum(); - int actionFixEndLine = actionSet.getFixEndLineNum(); - - String actionStr = actionSet.getActionString(); - ITree previousParent = null; - List hunkActionSets = new ArrayList<>(); - - if (actionStr.startsWith("INS")) { - if (hunkFixStartLine + hunkFixRange < actionFixStartLine) { - addHunkActionSets(hunkActionSets, allHunkFixPatterns, hunk);// save the previous non-null hunkFixPattern. - break; - } - if (actionFixEndLine >= hunkFixStartLine ) { - ITree parent = addToHunkActionSets(actionSet, hunkActionSets, allHunkFixPatterns, previousParent, hunk); - if (parent != null) { - if (parent != previousParent) { - hunkActionSets = new ArrayList<>(); - } - hunkActionSets.add(actionSet); - } else if (hunkActionSets.size() > 0) { - hunkActionSets = new ArrayList<>(); - } - previousParent = parent; - } - } else { // UPD, DEL, MOV - if (hunkBugStartLine + hunkBugRange < actionBugStartLine) { - addHunkActionSets(hunkActionSets, allHunkFixPatterns, hunk);// save the previous non-null hunkFixPattern. - break; - } - if (actionBugEndLine >= hunkBugStartLine ) { - ITree parent = addToHunkActionSets(actionSet, hunkActionSets, allHunkFixPatterns, previousParent, hunk); - if (parent != null) { // same parent - if (parent != previousParent) { - hunkActionSets = new ArrayList<>(); - } - hunkActionSets.add(actionSet); - } else if (hunkActionSets.size() > 0) { - hunkActionSets = new ArrayList<>(); - } - previousParent = parent; - } - } - addHunkActionSets(hunkActionSets, allHunkFixPatterns, hunk); - } - } - - return allHunkFixPatterns; - } - - private int getEndPosition(List children) { - int endPosition = 0; - for (int i = 0, size = children.size(); i < size; i ++) { - ITree child = children.get(i); - int type = child.getType(); - if (Checker.isStatement2(type)) { - if ( i > 0) { - child = children.get(i - 1); - endPosition = child.getPos() + child.getLength(); - } else { - endPosition = child.getPos() - 1; - } - break; - } - } - return endPosition; - } - - private void addHunkActionSets(List hunkActionSets, List allHunkFixPatterns, DiffEntryHunk hunk) { - if (hunkActionSets.size() > 0) { - HunkFixPattern hunkFixPattern = new HunkFixPattern(hunk, hunkActionSets); - allHunkFixPatterns.add(hunkFixPattern); - } - } - - private ITree addToHunkActionSets(HierarchicalActionSet actionSet, List hunkActionSets, - List allHunkFixPatterns, ITree previousParent, DiffEntryHunk hunk) { - String astNodeType = actionSet.getAstNodeType(); - if ("FieldDeclaration".equals(astNodeType)) { - addHunkActionSets(hunkActionSets, allHunkFixPatterns, hunk); - hunkActionSets = new ArrayList<>(); - hunkActionSets.add(actionSet); - HunkFixPattern hunkFixPattern = new HunkFixPattern(hunk, hunkActionSets); - allHunkFixPatterns.add(hunkFixPattern); - return null; - } else { - ITree currentParent = actionSet.getNode().getParent(); - if (previousParent == null) { - previousParent = currentParent; - } else { - if (!previousParent.equals(currentParent)) { - HunkFixPattern hunkFixPattern = new HunkFixPattern(hunk, hunkActionSets); - allHunkFixPatterns.add(hunkFixPattern); - previousParent = currentParent; - } - } - return previousParent; - } - } - - private List getFirstAndLastMoveAction(HierarchicalActionSet gumTreeResult) { - List firstAndLastMoveActions = new ArrayList<>(); - List actions = new ArrayList<>(); - actions.addAll(gumTreeResult.getSubActions()); - if (actions.size() == 0) { - return null; - } - Move firstMoveAction = null; - Move lastMoveAction = null; - while (actions.size() > 0) { - List subActions = new ArrayList<>(); - for (HierarchicalActionSet action : actions) { - subActions.addAll(action.getSubActions()); - if (action.toString().startsWith("MOV")) { - if (firstMoveAction == null) { - firstMoveAction = (Move) action.getAction(); - lastMoveAction = (Move) action.getAction(); - } else { - int startPosition = action.getStartPosition(); - int length = action.getLength(); - int startPositionFirst = firstMoveAction.getPosition(); - int startPositionLast = lastMoveAction.getPosition(); - int lengthLast = lastMoveAction.getNode().getLength(); - if (startPosition < startPositionFirst || (startPosition == startPositionFirst && length > firstMoveAction.getLength())) { - firstMoveAction = (Move) action.getAction(); - } - if ((startPosition + length) > (startPositionLast + lengthLast)) { - lastMoveAction = (Move) action.getAction(); - } - } - } - } - - actions.clear(); - actions.addAll(subActions); - } - if (firstMoveAction == null) { - return null; - } - firstAndLastMoveActions.add(firstMoveAction); - firstAndLastMoveActions.add(lastMoveAction); - return firstAndLastMoveActions; - } - - /** - * Filter out the modify actions, which are not in the DiffEntry hunks, without considering the same parent node. - * - * @param violations - * @param actionSets - * @param revFile - * @param prevFile - * @return - */ - public List filterActionsByModifiedRange(List violations, - List actionSets, File revFile, File prevFile) { - - List selectedViolations = new ArrayList<>(); - - CUCreator cuCreator = new CUCreator(); - CompilationUnit prevUnit = cuCreator.createCompilationUnit(prevFile); - CompilationUnit revUnit = cuCreator.createCompilationUnit(revFile); - if (prevUnit == null || revUnit == null) { - return selectedViolations; - } - - for (Violation violation : violations) { - int startLine = violation.getStartLineNum(); - int endLine = violation.getEndLineNum(); - int bugStartLine = violation.getBugStartLineNum(); - int bugEndLine = violation.getBugEndLineNum(); - int fixStartLine = violation.getFixStartLineNum(); - int fixEndLine = violation.getFixEndLineNum(); - - for (HierarchicalActionSet actionSet : actionSets) { - int actionBugStartLine = actionSet.getBugStartLineNum(); - if (actionBugStartLine == 0) { - actionBugStartLine = setLineNumbers(actionSet, prevUnit, revUnit); - } - int actionBugEndLine = actionSet.getBugEndLineNum(); - int actionFixStartLine = actionSet.getFixStartLineNum(); - int actionFixEndLine = actionSet.getFixEndLineNum(); - - String actionStr = actionSet.getActionString(); - if (actionStr.startsWith("INS")) { - if (fixStartLine <= actionFixStartLine && actionFixEndLine <= fixEndLine) { - if (actionBugStartLine != 0) { - if (startLine <= actionBugEndLine && endLine >= actionBugStartLine) { - violation.getActionSets().add(actionSet); - } - } else { - - violation.getActionSets().add(actionSet); - } - } - } else { -// if (bugEndLine < actionBugStartLine) { -// break; -// } - if (bugStartLine <= actionBugStartLine && actionBugEndLine <= bugEndLine) { - if (startLine <= actionBugEndLine && endLine >= actionBugStartLine) { - violation.getActionSets().add(actionSet); - } - } - } - } - - if (violation.getActionSets().size() > 0) { - selectedViolations.add(violation); - } - } - return selectedViolations; - } - - /** - * Match hierarchical actions with code change diffs for C code. - * - * @param diffentryHunks - * @param actionSets - * @param revFile - * @param prevFile - * @return - */ - public List matchActionsByDiffEntryForC(List diffentryHunks, List actionSets) { - - List selectedViolations = new ArrayList<>(); - - for (DiffEntryHunk diffentryHunk : diffentryHunks) { - int bugHunkStartLine = diffentryHunk.getBugLineStartNum(); - int bugHunkEndLine = bugHunkStartLine + diffentryHunk.getBugRange() - 1; - int fixHunkStartLine = diffentryHunk.getFixLineStartNum(); - int fixHunkEndLine = fixHunkStartLine + diffentryHunk.getFixedHunkSize() - 1; - - for (HierarchicalActionSet actionSet : actionSets) { - String actionStr = actionSet.getActionString(); - if (actionStr.startsWith("INS")) { - int actionFixStartLine = actionSet.getFixStartLineNum(); - int actionFixEndLine = actionSet.getFixEndLineNum(); - if (fixHunkStartLine <= actionFixEndLine && actionFixStartLine <= fixHunkEndLine ) { - diffentryHunk.getActionSets().add(actionSet); - } - } else { - int actionBugStartLine = actionSet.getBugStartLineNum(); - int actionBugEndLine = actionSet.getBugEndLineNum(); - - if (bugHunkStartLine <= actionBugEndLine && actionBugStartLine <= bugHunkEndLine) { - diffentryHunk.getActionSets().add(actionSet); - } - } - } - - if (diffentryHunk.getActionSets().size() > 0) { - selectedViolations.add(diffentryHunk); - } - } - return selectedViolations; - } - - - /** - * Filter out the modify actions, which are not in the DiffEntry hunks, with considering the same parent node. - * - * @param violations - * @param actionSets - * @param revFile - * @param prevFile - * @return - */ - public List filterActionsByModifiedRange2(List diffentryHunks, - List actionSets, File revFile, File prevFile) { - - List selectedViolations = new ArrayList<>(); - - CUCreator cuCreator = new CUCreator(); - CompilationUnit prevUnit = cuCreator.createCompilationUnit(prevFile); - CompilationUnit revUnit = cuCreator.createCompilationUnit(revFile); - if (prevUnit == null || revUnit == null) { - return selectedViolations; - } - - for (DiffEntryHunk diffentryHunk : diffentryHunks) { -// int violationEndLine = violationStartLine + diffentryHunk.getBugRange(); - int bugHunkStartLine = diffentryHunk.getBugLineStartNum(); - int bugHunkEndLine = bugHunkStartLine + diffentryHunk.getBugRange() - 1; - int fixHunkStartLine = diffentryHunk.getFixLineStartNum(); - int fixHunkEndLine = fixHunkStartLine + diffentryHunk.getFixedHunkSize() - 1; - - for (HierarchicalActionSet actionSet : actionSets) { - int actionBugStartLine = actionSet.getBugStartLineNum(); - if (actionBugStartLine == 0) { - actionBugStartLine = setLineNumbers(actionSet, prevUnit, revUnit); - } - int actionBugEndLine = actionSet.getBugEndLineNum(); - int actionFixStartLine = actionSet.getFixStartLineNum(); - int actionFixEndLine = actionSet.getFixEndLineNum(); - - String actionStr = actionSet.getActionString(); - if (actionStr.startsWith("INS")) { - if (fixHunkStartLine <= actionFixEndLine && fixHunkEndLine >= actionFixStartLine ) { - if (actionBugStartLine != 0) { - diffentryHunk.getActionSets().add(actionSet); - } - } - } else { - if (bugHunkStartLine <= actionBugEndLine && bugHunkEndLine >= actionBugStartLine) { - diffentryHunk.getActionSets().add(actionSet); - } - } - } - - - if (diffentryHunk.getActionSets().size() > 0) { - selectedViolations.add(diffentryHunk); - } - } - return selectedViolations; - } - - - /** - * Filter out the modify actions, which are not in the DiffEntry hunks, without considering DiffEntry hunks. - * - * @param violations - * @param actionSets - * @param revFile - * @param prevFile - * @return - */ - public List filterActionsByModifiedRange3(List violations, - List actionSets, File revFile, File prevFile) { - - List selectedViolations = new ArrayList<>(); - - CUCreator cuCreator = new CUCreator(); - CompilationUnit prevUnit = cuCreator.createCompilationUnit(prevFile); - CompilationUnit revUnit = cuCreator.createCompilationUnit(revFile); - if (prevUnit == null || revUnit == null) { - return selectedViolations; - } - - for (Violation violation : violations) { - int startLine = violation.getStartLineNum(); - int endLine = violation.getEndLineNum(); - -// ITree parent = null; -// List actionSetsWithSameParent = new ArrayList<>(); //TODO - for (HierarchicalActionSet actionSet : actionSets) { - int actionBugStartLine = actionSet.getStartPosition(); - int actionBugEndLine = actionSet.getLength(); - int actionFixStartLine = actionSet.getFixStartLineNum(); - int actionFixEndLine = actionSet.getFixEndLineNum(); - - String actionStr = actionSet.getActionString(); - if (actionStr.startsWith("INS")) { // FIXME It is impossible to locate the INS action by the buggy line range. - if (startLine <= actionFixStartLine && actionFixEndLine <= endLine) { - if (actionBugStartLine != 0) { - if (startLine <= actionBugEndLine && endLine >= actionBugStartLine) { - violation.getActionSets().add(actionSet); - } - } else { - violation.getActionSets().add(actionSet); - } - } - } else { -// if (endLine < actionBugStartLine) { -// break; -// } - if (startLine <= actionBugStartLine && actionBugEndLine <= endLine) { - if (startLine <= actionBugEndLine && endLine >= actionBugStartLine) { - violation.getActionSets().add(actionSet); - } - } - } - } - - if (violation.getActionSets().size() > 0) { - selectedViolations.add(violation); - } - } - return selectedViolations; - } - - private int setLineNumbers(HierarchicalActionSet actionSet, CompilationUnit prevUnit, CompilationUnit revUnit) { - int actionBugStartLine; - int actionBugEndLine; - int actionFixStartLine; - int actionFixEndLine; - - // position of buggy statements - int bugStartPosition = 0; - int bugEndPosition = 0; - // position of fixed statements - int fixStartPosition = 0; - int fixEndPosition = 0; - - String actionStr = actionSet.getActionString(); - if (actionStr.startsWith("INS")) { - fixStartPosition = actionSet.getStartPosition(); - fixEndPosition = fixStartPosition + actionSet.getLength(); - - List firstAndLastMov = getFirstAndLastMoveAction(actionSet); - if (firstAndLastMov != null) { - bugStartPosition = firstAndLastMov.get(0).getNode().getPos(); - ITree lastTree = firstAndLastMov.get(1).getNode(); - bugEndPosition = lastTree.getPos() + lastTree.getLength(); - } - } else { - bugStartPosition = actionSet.getStartPosition(); // range of actions - bugEndPosition = bugStartPosition + actionSet.getLength(); - if (actionStr.startsWith("UPD")) { - Update update = (Update) actionSet.getAction(); - ITree newNode = update.getNewNode(); - fixStartPosition = newNode.getPos(); - fixEndPosition = fixStartPosition + newNode.getLength(); - - String astNodeType = actionSet.getAstNodeType(); -// if (Checker.withBlockStatement(newNode.getType())) { -//// List children = update.getNode().getChildren(); -//// bugEndPosition = getEndPosition(children); -//// List newChildren = newNode.getChildren(); -//// fixEndPosition = getEndPosition(newChildren); -// } else - if ("TypeDeclaration".equals(astNodeType)) { - bugEndPosition = getClassBodyStartPosition(update.getNode()); - fixEndPosition = getClassBodyStartPosition(newNode); - } else if ("MethodDeclaration".equals(astNodeType)) { - List children = update.getNode().getChildren(); - bugEndPosition = getEndPosition(children); - List newChildren = newNode.getChildren(); - fixEndPosition = getEndPosition(newChildren); - } - if (fixEndPosition == 0) { - fixEndPosition = fixStartPosition + newNode.getLength(); - } - } else if (actionStr.startsWith("DEL")) { - ITree buggyTree = actionSet.getNode(); - int type = buggyTree.getType(); - if (type == 55) { // TypeDeclaration - bugEndPosition = getClassBodyStartPosition(buggyTree); - } else if (type == 31 || Checker.withBlockStatement(type)) {//MethodDeclaration && Block-Statements - List children = buggyTree.getChildren(); - bugEndPosition = getEndPosition(children); - } - } - if (bugEndPosition == 0) { - bugEndPosition = bugStartPosition + actionSet.getLength(); - } - } - actionBugStartLine = bugStartPosition == 0 ? 0 : prevUnit.getLineNumber(bugStartPosition); - actionBugEndLine = bugEndPosition == 0 ? 0 : prevUnit.getLineNumber(bugEndPosition); - actionFixStartLine = fixStartPosition == 0 ? 0 : revUnit.getLineNumber(fixStartPosition); - actionFixEndLine = fixEndPosition == 0 ? 0 : revUnit.getLineNumber(fixEndPosition); - actionSet.setBugStartLineNum(actionBugStartLine); - actionSet.setBugEndLineNum(actionBugEndLine); - actionSet.setFixStartLineNum(actionFixStartLine); - actionSet.setFixEndLineNum(actionFixEndLine); - actionSet.setBugEndPosition(bugEndPosition); - actionSet.setFixEndPosition(fixEndPosition); - - return actionBugStartLine; - } - - private int getClassBodyStartPosition(ITree tree) { - List children = tree.getChildren(); - for (int i = 0, size = children.size(); i < size; i ++) { - ITree child = children.get(i); - int type = child.getType(); - // Modifier, NormalAnnotation, MarkerAnnotation, SingleMemberAnnotation - if (type != 83 && type != 77 && type != 78 && type != 79 - && type != 5 && type != 39 && type != 43 && type != 74 && type != 75 - && type != 76 && type != 84 && type != 87 && type != 88 && type != 42) { - // ArrayType, PrimitiveType, SimpleType, ParameterizedType, - // QualifiedType, WildcardType, UnionType, IntersectionType, NameQualifiedType, SimpleName - if (i > 0) { - child = children.get(i - 1); - return child.getPos() + child.getLength() + 1; - } else { - return child.getPos() - 1; - } - } - } - return 0; - } - -} diff --git a/src/main/java/edu/lu/uni/serval/gumtree/regroup/HunkFixPattern.java b/src/main/java/edu/lu/uni/serval/gumtree/regroup/HunkFixPattern.java deleted file mode 100644 index 3bd89fe..0000000 --- a/src/main/java/edu/lu/uni/serval/gumtree/regroup/HunkFixPattern.java +++ /dev/null @@ -1,27 +0,0 @@ -package edu.lu.uni.serval.gumtree.regroup; - -import java.util.List; - -import edu.lu.uni.serval.diffentry.DiffEntryHunk; - -public class HunkFixPattern { - - private DiffEntryHunk hunk; - - private List hunkActionSets; - - public HunkFixPattern(DiffEntryHunk hunk, List hunkActionSets) { - super(); - this.hunk = hunk; - this.hunkActionSets = hunkActionSets; - } - - public DiffEntryHunk getHunk() { - return hunk; - } - - public List getHunkActionSets() { - return hunkActionSets; - } - -} diff --git a/src/main/java/edu/lu/uni/serval/gumtree/regroup/SimpleTree.java b/src/main/java/edu/lu/uni/serval/gumtree/regroup/SimpleTree.java deleted file mode 100644 index 0900b7a..0000000 --- a/src/main/java/edu/lu/uni/serval/gumtree/regroup/SimpleTree.java +++ /dev/null @@ -1,68 +0,0 @@ -package edu.lu.uni.serval.gumtree.regroup; - -import java.util.ArrayList; -import java.util.List; - -public class SimpleTree { - - private String nodeType; - private String label; - private SimpleTree parent; - private List children = new ArrayList<>(); - - public String getNodeType() { - return nodeType; - } - - public void setNodeType(String nodeType) { - this.nodeType = nodeType; - } - - public String getLabel() { - return label; - } - - public void setLabel(String label) { - this.label = label; - } - - public SimpleTree getParent() { - return parent; - } - - public void setParent(SimpleTree parent) { - this.parent = parent; - } - - public List getChildren() { - return children; - } - - public void setChildren(List children) { - this.children = children; - } - - private List strList = new ArrayList<>(); - - @Override - public String toString() { - String str = this.nodeType + "@@" + this.label; - if (strList.size() == 0) { - strList.add(str); - for (SimpleTree child : children) { - child.toString(); - List strList1 = child.strList; - for (String str1 : strList1) { - strList.add("------" + str1); - } - } - } - - str = ""; - for (String str1 : strList) { - str += str1 + "\n"; - } - - return str; - } -} diff --git a/src/main/java/edu/lu/uni/serval/gumtree/regroup/SimplifyTree.java b/src/main/java/edu/lu/uni/serval/gumtree/regroup/SimplifyTree.java deleted file mode 100644 index 317bf18..0000000 --- a/src/main/java/edu/lu/uni/serval/gumtree/regroup/SimplifyTree.java +++ /dev/null @@ -1,902 +0,0 @@ -package edu.lu.uni.serval.gumtree.regroup; - -import java.util.ArrayList; -import java.util.HashMap; -import java.util.List; -import java.util.Map; - -import com.github.gumtreediff.actions.model.Action; -import com.github.gumtreediff.tree.ITree; - -import edu.lu.uni.serval.FixPattern.utils.ASTNodeMap; -import edu.lu.uni.serval.FixPattern.utils.Checker; -import edu.lu.uni.serval.utils.ListSorter; - -/** - * Simplify the ITree of source code into a simple tree. - * - * @author kui.liu - * - */ -public class SimplifyTree { - - private static final String ABSTRACT_TYPE = "T"; - private static final String ABSTRACT_NAME = "N"; - private static final String ABSTRACT_METHOD = "m"; - private static final String ABSTRACT_VARIABLE = "v"; - - private Map abstractTypeIdentifiers = new HashMap<>(); - private Map abstractMethodIdentifiers = new HashMap<>(); - private Map abstractNameIdentifiers = new HashMap<>(); - private Map abstractVariableIdentifiers = new HashMap<>(); - - /** - * Convert ITree to a source code simple tree, an abstract identifier simple tree, and a semi-source code simple tree. - * - * @param actionSet - */ - public void abstractTree(HierarchicalActionSet actionSet) { - SimpleTree sourceCodeSimpleTree = null; // source code tree and AST node type tree - SimpleTree abstractIdentifierTree = null; // abstract identifier tree - SimpleTree abstractSimpleTree = null; // semi-source code tree. and AST node type tree - SimpleTree simpleTree = null; // source code tree with canonical variable names. - - if (actionSet.getActionString().startsWith("INS")) { - List allMoveActions = getAllMoveActions(actionSet); - if (allMoveActions != null) { - List actions = new ArrayList<>(); - for (Action action : allMoveActions) { - boolean hasParent = false; - ITree parent = action.getNode().getParent(); - for (Action act : allMoveActions) { - if (act == action) continue; - ITree actNode = act.getNode(); - if (actNode.equals(parent)) { - hasParent = true; - break; - } - } - if (!hasParent) { - actions.add(action); - } - } -// sourceCodeSimpleTree = sourceCodeTree(actions); - simpleTree = canonicalizeSourceCodeTree(actions, null); - } - } else { - ITree tree = actionSet.getNode(); - String astNodeType = actionSet.getAstNodeType(); - if (Checker.containsBodyBlock(astNodeType)) { - // delete the body block. - List children = tree.getChildren(); - List newChildren = new ArrayList<>(); - for (ITree child : children) { - if (!child.getLabel().endsWith("Body")) { - newChildren.add(child); - } - } - tree.setChildren(newChildren); - } -// sourceCodeSimpleTree = originalSourceCodeTree(tree, null); -// abstractIdentifierTree = abstractIdentifierTree(actionSet, tree, null); -// abstractSimpleTree = semiSourceCodeTree(actionSet, tree, null); - simpleTree = canonicalizeSourceCodeTree(tree, null); - } - - actionSet.setAbstractSimpleTree(abstractSimpleTree); - actionSet.setAbstractIdentifierTree(abstractIdentifierTree); - actionSet.setSimpleTree(simpleTree); - actionSet.setOriginalTree(sourceCodeSimpleTree); - } - - /** - * Convert ITree to a source code simple tree, an abstract identifier simple tree, and a semi-source code simple tree. - * - * @param actionSet - */ - public void abstractTree(HierarchicalActionSet actionSet, int bugEndPosition) { - SimpleTree sourceCodeSimpleTree = null; // source code tree and AST node type tree - SimpleTree abstractIdentifierTree = null; // abstract identifier tree - SimpleTree abstractSimpleTree = null; // semi-source code tree. and AST node type tree - SimpleTree simpleTree = null; // source code tree with canonical variable names. - - if (actionSet.getActionString().startsWith("INS")) { - List allMoveActions = getAllMoveActions(actionSet); - if (allMoveActions != null) { - List actions = new ArrayList<>(); - for (Action action : allMoveActions) { - boolean hasParent = false; - ITree parent = action.getNode().getParent(); - for (Action act : allMoveActions) { - if (act == action) continue; - ITree actNode = act.getNode(); - if (actNode.equals(parent)) { - hasParent = true; - break; - } - } - if (!hasParent) { - actions.add(action); - } - } -// sourceCodeSimpleTree = sourceCodeTree(actions); - simpleTree = canonicalizeSourceCodeTree(actions, null); - } - } else { - ITree tree = actionSet.getNode(); -// String astNodeType = actionSet.getAstNodeType(); -// if (Checker.containsBodyBlock(astNodeType)) { -// // delete the body block. -// List children = tree.getChildren(); -// List newChildren = new ArrayList<>(); -// for (ITree child : children) { -// if (!child.getLabel().endsWith("Body")) { -// newChildren.add(child); -// } -// } -// tree.setChildren(newChildren); -// } -// sourceCodeSimpleTree = originalSourceCodeTree(tree, null); -// abstractIdentifierTree = abstractIdentifierTree(actionSet, tree, null); -// abstractSimpleTree = semiSourceCodeTree(actionSet, tree, null); -// if (actionSet.getActionString().startsWith("UPD")) { -// simpleTree = canonicalizeSourceCodeTree(tree, null, bugEndPosition); -// } else { -// simpleTree = canonicalizeSourceCodeTree(tree, null); -// } - simpleTree = canonicalizeSourceCodeTree(tree, null, bugEndPosition); - } - - actionSet.setAbstractSimpleTree(abstractSimpleTree); - actionSet.setAbstractIdentifierTree(abstractIdentifierTree); - actionSet.setSimpleTree(simpleTree); - actionSet.setOriginalTree(sourceCodeSimpleTree); - } - - private SimpleTree canonicalizeSourceCodeTree(List actions, SimpleTree parent) { - SimpleTree simpleTree = new SimpleTree(); - simpleTree.setLabel("Block"); - simpleTree.setNodeType("Block"); - simpleTree.setParent(parent); - List children = new ArrayList<>(); - for (Action action : actions) { - ITree node = action.getNode(); - children.add(canonicalizeSourceCodeTree(node, simpleTree)); - } - simpleTree.setChildren(children); - return simpleTree; - } - - public SimpleTree canonicalizeSourceCodeTree(ITree tree, SimpleTree parent) { - SimpleTree simpleTree = new SimpleTree(); - - String label = tree.getLabel(); - String astNode = ASTNodeMap.map.get(tree.getType()); - - List children = tree.getChildren(); - if (children.size() > 0) { - simpleTree.setNodeType(astNode); - if (astNode.endsWith("Type")) { - simpleTree.setLabel(canonicalizeTypeStr(label).replaceAll(" ", "")); - } else { - if ((astNode.equals("SimpleName") || astNode.equals("MethodInvocation"))) { - if (label.startsWith("MethodName:")) { - simpleTree.setNodeType("MethodName"); - label = label.substring(11); - int argusIndex = label.indexOf(":["); - if (argusIndex > 0) { - label = label.substring(0, argusIndex); - } - } else if (label.startsWith("ClassName:")) { - simpleTree.setNodeType("ClassName"); - label = label.substring(10); - } - simpleTree.setLabel(label); - } else { - simpleTree.setLabel(astNode); - } - List subTrees = new ArrayList<>(); - for (ITree child : children) { - subTrees.add(canonicalizeSourceCodeTree(child, simpleTree)); - } - simpleTree.setChildren(subTrees); - } - } else { - if (astNode.endsWith("Name")) { - // variableName, methodName, QualifiedName - if (label.startsWith("MethodName:")) { // - simpleTree.setNodeType("MethodName"); - label = label.substring(11); - int argusIndex = label.indexOf(":["); - if (argusIndex > 0) { - label = label.substring(0, argusIndex); - } - simpleTree.setLabel(label); - } else if (label.startsWith("ClassName:")) { - simpleTree.setNodeType("ClassName"); - label = label.substring(10); - simpleTree.setLabel(label); - } else if (label.startsWith("Name:")) { - label = label.substring(5); - char firstChar = label.charAt(0); - if (Character.isUpperCase(firstChar)) { - simpleTree.setNodeType("Name"); - simpleTree.setLabel(label); - } else {// variableName: - simpleTree.setNodeType("VariableName"); - simpleTree.setLabel(canonicalVariableName(label, tree)); - } - } else {// variableName: - simpleTree.setNodeType("VariableName"); - simpleTree.setLabel(canonicalVariableName(label, tree)); - } - } else { - simpleTree.setNodeType(astNode); - if (astNode.endsWith("Type")) { - simpleTree.setLabel(canonicalizeTypeStr(label).replaceAll(" ", "")); - } else if (astNode.startsWith("Type")) { - simpleTree.setLabel(canonicalizeTypeStr(label).replaceAll(" ", "")); - } else if ((astNode.equals("SimpleName") || astNode.equals("MethodInvocation")) && label.startsWith("MethodName:")) { - simpleTree.setNodeType("MethodName"); - label = label.substring(11); - int argusIndex = label.indexOf(":["); - if (argusIndex > 0) { - label = label.substring(0, argusIndex); - } - simpleTree.setLabel(label); - } else { - simpleTree.setLabel(label.replaceAll(" ", "")); - } - } - } - - simpleTree.setParent(parent); - return simpleTree; - } - - public void canonicalizeSourceCodeTree(ITree tree) { - String label = tree.getLabel(); - String astNode = ASTNodeMap.map.get(tree.getType()); - - List children = tree.getChildren(); - if (children.size() > 0) { - if (astNode.endsWith("Type")) { - } else { - if ((astNode.equals("SimpleName") || astNode.equals("MethodInvocation"))) { - if (label.startsWith("MethodName:")) { - } else if (label.startsWith("ClassName:")) { - } - } else { - } - for (ITree child : children) { - canonicalizeSourceCodeTree(child); - } - } - } else { - if (astNode.endsWith("Name")) { - // variableName, methodName, QualifiedName - if (label.startsWith("MethodName:")) { // - } else if (label.startsWith("ClassName:")) { - } else if (label.startsWith("Name:")) { - label = label.substring(5); - char firstChar = label.charAt(0); - if (Character.isUpperCase(firstChar)) { -// simpleTree.setNodeType("Name"); - } else {// variableName: - canonicalVariableName(label, tree); - } - } else {// variableName: - canonicalVariableName(label, tree); - } - } - } - } - - public SimpleTree canonicalizeSourceCodeTree(ITree tree, SimpleTree parent, int bugEndPosition) { - SimpleTree simpleTree = new SimpleTree(); - - String label = tree.getLabel(); - String astNode = ASTNodeMap.map.get(tree.getType()); - - List children = tree.getChildren(); - if (children.size() > 0) { - simpleTree.setNodeType(astNode); - if (astNode.endsWith("Type")) { - simpleTree.setLabel(canonicalizeTypeStr(label).replaceAll(" ", "")); - } else { - if ((astNode.equals("SimpleName") || astNode.equals("MethodInvocation"))) { - if (label.startsWith("MethodName:")) { - simpleTree.setNodeType("MethodName"); - label = label.substring(11); - int argusIndex = label.indexOf(":["); - if (argusIndex > 0) { - label = label.substring(0, argusIndex); - } - } else if (label.startsWith("ClassName:")) { - simpleTree.setNodeType("ClassName"); - label = label.substring(10); - } - simpleTree.setLabel(label); - } else { - simpleTree.setLabel(astNode); - } - List subTrees = new ArrayList<>(); - for (ITree child : children) { - if (child.getPos() > bugEndPosition) continue; - subTrees.add(canonicalizeSourceCodeTree(child, simpleTree)); - } - simpleTree.setChildren(subTrees); - } - } else { - if (astNode.endsWith("Name")) { - // variableName, methodName, QualifiedName - if (label.startsWith("MethodName:")) { // - simpleTree.setNodeType("MethodName"); - label = label.substring(11); - int argusIndex = label.indexOf(":["); - if (argusIndex > 0) { - label = label.substring(0, argusIndex); - } - simpleTree.setLabel(label); - } else if (label.startsWith("ClassName:")) { - simpleTree.setNodeType("ClassName"); - label = label.substring(10); - simpleTree.setLabel(label); - } else if (label.startsWith("Name:")) { - label = label.substring(5); - char firstChar = label.charAt(0); - if (Character.isUpperCase(firstChar)) { - simpleTree.setNodeType("Name"); - simpleTree.setLabel(label); - } else {// variableName: - simpleTree.setNodeType("VariableName"); - simpleTree.setLabel(canonicalVariableName(label, tree)); - } - } else {// variableName: - simpleTree.setNodeType("VariableName"); - simpleTree.setLabel(canonicalVariableName(label, tree)); - } - } else { - simpleTree.setNodeType(astNode); - if (astNode.endsWith("Type")) { - simpleTree.setLabel(canonicalizeTypeStr(label).replaceAll(" ", "")); - } else if (astNode.startsWith("Type")) { - simpleTree.setLabel(canonicalizeTypeStr(label).replaceAll(" ", "")); - } else if ((astNode.equals("SimpleName") || astNode.equals("MethodInvocation")) && label.startsWith("MethodName:")) { - simpleTree.setNodeType("MethodName"); - label = label.substring(11); - int argusIndex = label.indexOf(":["); - if (argusIndex > 0) { - label = label.substring(0, argusIndex); - } - simpleTree.setLabel(label); - } else { - simpleTree.setLabel(label.replaceAll(" ", "")); - } - } - } - - simpleTree.setParent(parent); - return simpleTree; - } - - public String canonicalVariableName(String label, ITree tree) { - ITree parent = tree.getParent(); - if (parent == null) { - return label; - } else { - String matchStr = null; - int parentType = parent.getType(); - if (parentType == 44) { // SingleVariableDeclaration - matchStr = matchSingleVariableDeclaration(parent, label); - } else if (parentType == 23 || parentType == 58 || parentType == 60) { - //FieldDeclaration, VariableDeclarationExpression, VariableDeclarationStatement - matchStr = matchVariableDeclarationExpression(parent, label); - } else if (parentType == 31) { // MethodDeclaration - List children = parent.getChildren(); - int index = children.indexOf(tree); - for (int i = index - 1; i >=0; i --) { - ITree child = children.get(i); - int childType = child.getType(); - if (childType == 60) { // VariableDeclarationStatement - matchStr = matchVariableDeclarationExpression(child, label); - } else if (childType == 44) { // SingleVariableDeclaration - matchStr = matchSingleVariableDeclaration(child, label); - } - if (matchStr != null) break; - } - } else if (parentType ==70 || parentType == 24 ||parentType == 12 || parentType == 54) { - // EnhancedForStatement, ForStatement, CatchClause, TryStatement - matchStr = matchStatements(parentType, parent, label); - } else if (parentType == 55) { // TypeDeclaration: Class Declaration - List children = parent.getChildren(); - int index = children.indexOf(tree); - for (int i = index - 1; i >=0; i --) { - ITree child = children.get(i); - if (child.getType() == 23) { // FieldDeclaration - matchStr = matchVariableDeclarationExpression(child, label); - if (matchStr != null) break; - } - } - } else if (parentType == 8) { // Block body - List children = parent.getChildren(); - int index = children.indexOf(tree); - for (int i = index - 1; i >=0; i --) { - ITree child = children.get(i); - if (child.getType() == 60) { // VariableDeclarationStatement - matchStr = matchVariableDeclarationExpression(child, label); - if (matchStr != null) break; - } - } - } - - if (matchStr != null) { - return matchStr; - } else { - return canonicalVariableName(label, parent); - } - } - } - - private String matchStatements(int typeInt, ITree tree, String label) { - String matchStr = null; - if (typeInt == 70) { // EnhancedForStatement - matchStr = matchSingleVariableDeclaration(tree.getChild(0), label); - } else if (typeInt == 24) { // ForStatement - List children = tree.getChildren(); - for (ITree child : children) { - if (child.getType() == 58) { - matchStr = matchVariableDeclarationExpression(child, label); - if (matchStr != null) break; - } else { - break; - } - } - } else if (typeInt == 12) { // CatchClause - matchStr = matchSingleVariableDeclaration(tree.getChild(0), label); - } else if (typeInt == 54) { // TryStatement - List children = tree.getChildren(); - for (ITree child : children) { - if (child.getType() == 58) { //VariableDeclarationExpression - matchStr = matchVariableDeclarationExpression(tree, label); - if (matchStr != null) break; - } else { - break; - } - } - } - return null; - } - - public Map canonicalVariableMap = new HashMap<>(); - public Map canonicalVariables = new HashMap<>(); - - private String matchVariableDeclarationExpression(ITree variable, String label) { - List children = variable.getChildren(); - ITree type = null; - for (int i = 0, size = children.size(); i < size; i ++) { - ITree child = children.get(i); - if (child.getType() == 59) {// VariableDeclarationFragment - if (type == null) { - type = children.get(i - 1); - } - ITree simpleName = child.getChild(0); - if (simpleName.getLabel().equals(label)) { - String typeStr = canonicalizeTypeStr(type.getLabel()); - return canonicalizeVariable(label, typeStr); - } - } - } - return null; - } - - private String matchSingleVariableDeclaration(ITree singleVariable, String label) { - List children = singleVariable.getChildren(); - for (int i = 0, size = children.size(); i < size; i ++) { - ITree child = children.get(i); - if (child.getType() == 42) { // SimpleName - if (child.getLabel().equals(label)) { - ITree type = children.get(i - 1); - String typeStr = canonicalizeTypeStr(type.getLabel()); - return canonicalizeVariable(label, typeStr); - } - break; - } - } - return null; - } - - private String canonicalizeVariable(String label, String typeStr) { - String key = label + ":" + typeStr; - if (canonicalVariableMap.containsKey(key)) { - label = canonicalVariableMap.get(key); - } else { - label = typeStr.toLowerCase() + "Var"; - Integer num = canonicalVariables.get(label); - if (num == null) { - num = 0; - } - num ++; - canonicalVariables.put(label, num); - label += "" + num; - canonicalVariableMap.put(key, label); - } - return label; - } - - private String canonicalizeTypeStr(String label) { - String typeStr = label; - int index1 = typeStr.indexOf("<"); - if (index1 != -1) { - typeStr = typeStr.substring(0, index1); - } - index1 = typeStr.lastIndexOf("."); - if (index1 != -1) { - typeStr = typeStr.substring(index1 + 1); - } - return typeStr; - } - -// public static String addPrefixByType(Type type) { -// String newName = ""; -// if (type instanceof PrimitiveType) { -// // byte,short,char,int,long,float,double,boolean,void -// newName = type.toString().toLowerCase(); -// } else if (type instanceof ArrayType) { -// // Type [ ] -// ArrayType at = (ArrayType) type; -// type = at.getElementType(); -// if (type instanceof SimpleType || type instanceof PrimitiveType) { -// newName = getNewName(type); -// } else { -// newName = addPrefixByType(type); -// } -// } else if (type instanceof SimpleType) { -// // TypeName -// if (type.toString().equals("Integer")) { -// newName = "int"; -// } else { -// newName = getNewName(type); -// } -// } else if (type instanceof QualifiedType) { -// // Type.SimpleName -// newName = ((QualifiedType) type).getName().toString().toLowerCase(); -// } else if (type instanceof ParameterizedType) { -// // Type < Type { , Type } > 泛型 -// ParameterizedType t = (ParameterizedType) type; -// newName = getNewName(t.getType()); -// } else if (type instanceof WildcardType) { -// newName = "object"; -// } -// return newName; -// } -// -// private static String getNewName(Type type) { -// String newName = ""; -// String typeName = type.toString(); -// int dot = typeName.lastIndexOf("."); -// if (dot > 0) { -// newName = typeName.substring(dot + 1).toString().toLowerCase(); -// } else { -// newName = typeName.toString().toLowerCase(); -// } -// return newName; -// } - - /** - * Convert the Move actions of an INS action into a simple tree with AST nodes and leaf labels. - * - * @param actions - * @return - */ - private SimpleTree sourceCodeTree(List actions) { - if (actions.size() > 0) { - SimpleTree simpleTree = new SimpleTree(); - simpleTree.setNodeType("Block"); - simpleTree.setLabel("Block"); - simpleTree.setParent(null); - List subTrees = new ArrayList<>(); - for (Action action : actions) { - ITree node = action.getNode(); - subTrees.add(sourceCodeTree(node, simpleTree)); - } - simpleTree.setChildren(subTrees); - - return simpleTree; - } - return null; - } - - /** - * Convert a Move action into a simple tree with AST nodes and leaf labels. - * - * @param tree - * @param parent - * @return - */ - private SimpleTree sourceCodeTree(ITree tree, SimpleTree parent) { - SimpleTree simpleTree = new SimpleTree(); - String astNode = ASTNodeMap.map.get(tree.getType()); - do { - if (astNode.endsWith("Statement") || astNode.equals("FieldDeclaration")) break; - - tree = tree.getParent(); - astNode = ASTNodeMap.map.get(tree.getType());// FIXME if the ASTNode is a method declaration or class declaration? - } while (!astNode.endsWith("Statement") && !astNode.equals("FieldDeclaration")); - - String label = tree.getLabel(); - List children = tree.getChildren(); - if (children.size() > 0) { - List subTrees = new ArrayList<>(); - for (ITree child : children) { - subTrees.add(sourceCodeTree(child, simpleTree)); - } - simpleTree.setChildren(subTrees); - simpleTree.setLabel(astNode); - } else { - simpleTree.setLabel(label); - } - simpleTree.setNodeType(astNode); - simpleTree.setParent(parent); - return simpleTree; - } - - /** - * Convert an UPD/DEL/MOV action into a simple tree with AST nodes and leaf labels. - * - * @param tree - * @param parent - * @return - */ - private SimpleTree originalSourceCodeTree(ITree tree, SimpleTree parent) { - SimpleTree simpleTree = new SimpleTree(); - - String label = tree.getLabel(); - String astNode = ASTNodeMap.map.get(tree.getType()); - - simpleTree.setNodeType(astNode); - List children = tree.getChildren(); - if (children.size() > 0) { - List subTrees = new ArrayList<>(); - for (ITree child : children) { - subTrees.add(originalSourceCodeTree(child, simpleTree)); - } - simpleTree.setChildren(subTrees); - simpleTree.setLabel(astNode); - } else { - simpleTree.setLabel(label); - } - - simpleTree.setParent(parent); - return simpleTree; - } - - /** - * Convert an UPD/DEL/MOV action into a simple tree with abstract identifiers of AST nodes and abstract identifiers of leaf labels. - * - * @param actionSet - * @param tree - * @param parent - * @return - */ - private SimpleTree abstractIdentifierTree(ITree tree, SimpleTree parent) { - SimpleTree simpleTree = new SimpleTree(); - - String label = tree.getLabel(); - String astNode = ASTNodeMap.map.get(tree.getType()); - - simpleTree.setNodeType(astNode); - List children = tree.getChildren(); - if (children.size() > 0) { - if (astNode.endsWith("Type")) { - simpleTree.setNodeType("Type"); - simpleTree.setLabel(getAbstractLabel(abstractTypeIdentifiers, label, ABSTRACT_TYPE)); // abstract Type identifier - } else { - List subTrees = new ArrayList<>(); - for (ITree child : children) { - subTrees.add(abstractIdentifierTree(child, simpleTree)); - } - simpleTree.setChildren(subTrees); - simpleTree.setLabel(astNode); - } - } else { - if (astNode.endsWith("Type")) { - simpleTree.setNodeType("Type"); - if (astNode.equals("WildcardType")) { - simpleTree.setLabel("?"); - } else { - simpleTree.setLabel(getAbstractLabel(abstractTypeIdentifiers, label, ABSTRACT_TYPE)); // abstract Type identifier - } - } else if (astNode.endsWith("Name")) { - // variableName, methodName, QualifiedName - if (label.startsWith("MethodName:")) { // - label = label.substring(11); - simpleTree.setNodeType("Method"); - simpleTree.setLabel(getAbstractLabel(abstractMethodIdentifiers, label, ABSTRACT_METHOD)); // abstract method identifier - } else if (label.startsWith("Name:")) { - label = label.substring(5); - String firstChar = label.substring(0, 1); - if (firstChar.equals(firstChar.toUpperCase())) { - simpleTree.setNodeType("Name"); - simpleTree.setLabel(getAbstractLabel(abstractNameIdentifiers, label, ABSTRACT_NAME)); // abstract Name identifier - } else {// variableName: - simpleTree.setNodeType("Variable"); - simpleTree.setLabel(getAbstractLabel(abstractVariableIdentifiers, label, ABSTRACT_VARIABLE));// abstract Variable identifier - } - } else {// variableName: - simpleTree.setNodeType("Variable"); - simpleTree.setLabel(getAbstractLabel(abstractVariableIdentifiers, label, ABSTRACT_VARIABLE));// abstract Variable identifier - } - } else if (astNode.equals("BooleanLiteral") || astNode.equals("CharacterLiteral") || astNode.equals("NullLiteral") - || astNode.equals("NumberLiteral") || astNode.equals("StringLiteral") || astNode.equals("ThisExpression") - || astNode.equals("Modifier") || astNode.equals("Operator")) { - simpleTree.setNodeType(astNode); - simpleTree.setLabel(label); - } - } - - simpleTree.setParent(parent); - return simpleTree; - } - - /** - * Convert an UPD/DEL/MOV action into a semi-source code simple tree by abstracting the non-buggy code. - * - * @param actionSet - * @param tree - * @param parent - * @return - */ - private SimpleTree semiSourceCodeTree(HierarchicalActionSet actionSet, ITree tree, SimpleTree parent) { - SimpleTree simpleTree = new SimpleTree(); - simpleTree.setParent(parent); - // deep first - abstractBuggyTreeDeepFirst(actionSet, tree, simpleTree); - - return simpleTree; - } - - private void abstractBuggyTreeDeepFirst(HierarchicalActionSet actionSet, ITree tree, SimpleTree simpleTree) { - List children = tree.getChildren(); - HierarchicalActionSet modifyAction = findHierarchicalActionSet(tree.getPos(), tree.getLength(), actionSet); - String label = tree.getLabel(); - String astNode = ASTNodeMap.map.get(tree.getType()); - - if (Checker.isExpressionType(astNode)) { - if (modifyAction == null || !modifyAction.getActionString().contains("@@" + label)) { - simpleTree.setNodeType("Expression"); - simpleTree.setLabel("EXP"); // astNode - } - } else { - if (astNode.endsWith("Type")) { // TODO: sub Type - simpleTree.setNodeType("Type"); - // simpleTree.setLabel("?"); - if (astNode.equals("WildcardType")) { - simpleTree.setLabel("?"); - } else { // ArrayType, PrimitiveType, SimpleType, ParameterizedType, QualifiedType, WildcardType, UnionType,NameQualifiedType, IntersectionType - simpleTree.setLabel(astNode + "@@" + label); - } - } else if (astNode.endsWith("Name")) { // variableName, methodName, QualifiedName - if (label.startsWith("MethodName:")) { // - label = label.substring(11); - simpleTree.setNodeType("Method"); - simpleTree.setLabel(label); - } else if (label.startsWith("Name:")) { - label = label.substring(5); - String firstChar = label.substring(0, 1); - if (firstChar.equals(firstChar.toUpperCase())) { - simpleTree.setNodeType("Name"); - simpleTree.setLabel(label); // - } else {// variableName: - simpleTree.setNodeType("Variable"); - simpleTree.setLabel(getAbstractLabel(abstractVariableIdentifiers, label, ABSTRACT_VARIABLE)); - } - } else {// variableName: - simpleTree.setNodeType("Variable"); - simpleTree.setLabel(getAbstractLabel(abstractVariableIdentifiers, label, ABSTRACT_VARIABLE)); - } - } else if (astNode.equals("BooleanLiteral") ||astNode.equals("CharacterLiteral") || astNode.equals("ThisExpression") - || astNode.equals("NullLiteral") || astNode.equals("NumberLiteral") || astNode.equals("StringLiteral") - || astNode.equals("Modifier") || astNode.equals("Operator")) { - simpleTree.setNodeType(astNode); - simpleTree.setLabel(label); - } else { - simpleTree.setNodeType(astNode); - simpleTree.setLabel(astNode); - } - } - - List simpleChildren = new ArrayList<>(); - if (children != null && !astNode.endsWith("Type")) { - for (ITree child : children) { - simpleChildren.add(semiSourceCodeTree(actionSet, child, simpleTree)); - } - } - simpleTree.setChildren(simpleChildren); - } - - private List getAllMoveActions(HierarchicalActionSet actionSet) { - String astNodeType = actionSet.getAstNodeType(); - if (Checker.containsBodyBlock(astNodeType)) { - List allMoveActions = getAllMoveActions2(actionSet); - if (allMoveActions != null && allMoveActions.size() > 0) { - ListSorter sorter = new ListSorter(allMoveActions); - List moveActions = sorter.sortAscending(); - if (moveActions != null) { - allMoveActions = moveActions; - } - return allMoveActions; - } else {// FIXME: pure INS actions. - return null; - } - } else {// FIXME: pure INS actions. - return null; - } - /** - * Variables, non-new and used in the inserted statements, could be selected to localize buggy code - */ - } - - private List getAllMoveActions2(HierarchicalActionSet actionSet) { - List allMoveActions = new ArrayList<>(); - List actions = new ArrayList<>(); - actions.addAll(actionSet.getSubActions()); - if (actions.size() == 0) { - return null; - } - while (actions.size() > 0) { - List subActions = new ArrayList<>(); - for (HierarchicalActionSet action : actions) { - subActions.addAll(action.getSubActions()); - if (action.toString().startsWith("MOV")) { - allMoveActions.add(action.getAction()); - } - } - - actions.clear(); - actions.addAll(subActions); - } - return allMoveActions; - } - - private String getAbstractLabel(Map map, String label, String nameType) { - if (map.containsKey(label)) { - return map.get(label); - } else { - String name = nameType + map.size(); - map.put(label, name); - return name; - } - } - - private HierarchicalActionSet findHierarchicalActionSet(int position, int length, HierarchicalActionSet actionSet) { - if (actionSet.getStartPosition() == position && actionSet.getLength() == length && !actionSet.getActionString().startsWith("INS")) { - return actionSet; - } else { - for (HierarchicalActionSet subActionSet : actionSet.getSubActions()) { - HierarchicalActionSet actSet = findHierarchicalActionSet(position, length, subActionSet); - if (actSet != null) { - return actSet; - } - } - } - return null; - } - - public Map getAbstractTypeIdentifiers() { - return abstractTypeIdentifiers; - } - - public Map getAbstractMethodIdentifiers() { - return abstractMethodIdentifiers; - } - - public Map getAbstractNameIdentifiers() { - return abstractNameIdentifiers; - } - - public Map getAbstractVariableIdentifiers() { - return abstractVariableIdentifiers; - } - -} diff --git a/src/main/java/edu/lu/uni/serval/gumtree/regroup/Traveler.java b/src/main/java/edu/lu/uni/serval/gumtree/regroup/Traveler.java deleted file mode 100644 index 451086d..0000000 --- a/src/main/java/edu/lu/uni/serval/gumtree/regroup/Traveler.java +++ /dev/null @@ -1,140 +0,0 @@ -package edu.lu.uni.serval.gumtree.regroup; - -import java.util.ArrayList; -import java.util.List; - -import com.github.gumtreediff.tree.ITree; - -import edu.lu.uni.serval.FixPattern.utils.ASTNodeMap; - -/** - * A traveler to travel a tree-constructed object. - * - * @author kui.liu - * - */ -public class Traveler { - - public List> list = new ArrayList<>(); - - /** - * Get all action string by traveling HierarchicalActionSet in a deep-first way. - * - * @param actionSet - * @param astNodeTypeActionQueue - */ - public void travelActionSetDeepFirstToASTNodeQueue(HierarchicalActionSet actionSet, List astNodeTypeActionQueue) { - if (actionSet == null) { - System.err.println("Null Action set!"); - } else { - if (astNodeTypeActionQueue == null) { - astNodeTypeActionQueue = new ArrayList<>(); - } - - String actionStr = actionSet.getActionString(); - actionStr = actionStr.substring(0, actionStr.indexOf("@@")); - astNodeTypeActionQueue.add(actionStr); // RawToken: TODO - - if (actionStr.startsWith("DEL")) { - list.add(astNodeTypeActionQueue); // FIXME BUG: Change AST node type 1 to AST node type 2. Solve method: a list is one pattern. - } else { - List subActionSet = actionSet.getSubActions(); - int size = subActionSet.size(); - if (size > 0) { - for (HierarchicalActionSet subAction : subActionSet) { - List astNodeTypeActionQueue_ = new ArrayList<>(); - astNodeTypeActionQueue_.addAll(astNodeTypeActionQueue); - travelActionSetDeepFirstToASTNodeQueue(subAction, astNodeTypeActionQueue_); - } - } else { - list.add(astNodeTypeActionQueue); - } - } - } - } - - /** - * Get all AST node types of a root tree by traveling the root tree in a deep-first way. - * - * @param root - * @return - */ - public static List travelTreeDeepFirstToASTNodeQueue(ITree root) { - if (root == null) { - System.err.println("Null tree!"); - return null; - } - - List astNodeTypeQueue = new ArrayList<>(); - astNodeTypeQueue.add(ASTNodeMap.map.get(root.getType())); // RawToken: root.getLabel(); - - List childrenTreeList = root.getChildren(); - - if (childrenTreeList != null && childrenTreeList.size() > 0) { - for (ITree childTree : childrenTreeList) { - astNodeTypeQueue.addAll(travelTreeDeepFirstToASTNodeQueue(childTree)); - } - } - return astNodeTypeQueue; - } - - /** - * Get all AST node types of a root tree by traveling the root tree in a breadth-first way. - * - * @param root - * @return - */ - public static List travelTreeBreadthFirstToASTNodeQueue(ITree root) { - if (root == null) { - System.err.println("Null tree."); - return null; - } - - List astNodeTypeQueue = new ArrayList<>(); - astNodeTypeQueue.add(ASTNodeMap.map.get(root.getType())); // RawToken: root.getLabel(); - - List treeList = new ArrayList<>(); - treeList.add(root); - while (!treeList.isEmpty()) { - List childrenTreeList = new ArrayList<>(); - for (ITree tree : treeList) { - astNodeTypeQueue.addAll(travelTreeBreadthFirstToASTNodeQueue(tree)); - childrenTreeList.addAll(tree.getChildren()); - } - - treeList.clear(); - treeList.addAll(childrenTreeList); - } - return astNodeTypeQueue; - } - - /** - * Convert a root ITree into a SimpleTree by traveling the root tree in a deep-first way. - * - * SimpleTree node label is root.toShortString(). - * - * @param root - * @param parent - * @return - */ - public static SimpleTree travelITreeDeepFirstToSimpleTree(ITree root, SimpleTree parent) { - if (root == null) { - System.err.println("Null tree!"); - return null; - } - SimpleTree simpleTree = new SimpleTree(); - simpleTree.setLabel(root.toShortString()); - simpleTree.setParent(parent); - List children = new ArrayList<>(); - - List childrenTreeList = root.getChildren(); - if (childrenTreeList != null && childrenTreeList.size() > 0) { - for (ITree childTree : childrenTreeList) { - children.add(travelITreeDeepFirstToSimpleTree(childTree, simpleTree)); - } - } - simpleTree.setChildren(children); - return simpleTree; - } - -} diff --git a/src/main/java/edu/lu/uni/serval/livestudy/Alarm.java b/src/main/java/edu/lu/uni/serval/livestudy/Alarm.java deleted file mode 100644 index a49ef12..0000000 --- a/src/main/java/edu/lu/uni/serval/livestudy/Alarm.java +++ /dev/null @@ -1,33 +0,0 @@ -package edu.lu.uni.serval.livestudy; - -public class Alarm { - private String alarmType; - private String fileName; - private int startLine; - private int endLine; - - public String getAlarmType() { - return alarmType; - } - - public String getFileName() { - return fileName; - } - - public int getStartLine() { - return startLine; - } - - public int getEndLine() { - return endLine; - } - - public Alarm(String alarmType, String fileName, int startLine, int endLine) { - super(); - this.alarmType = alarmType; - this.fileName = fileName; - this.startLine = startLine; - this.endLine = endLine; - } - -} diff --git a/src/main/java/edu/lu/uni/serval/livestudy/ParseViolations.java b/src/main/java/edu/lu/uni/serval/livestudy/ParseViolations.java deleted file mode 100644 index 8e0d4ae..0000000 --- a/src/main/java/edu/lu/uni/serval/livestudy/ParseViolations.java +++ /dev/null @@ -1,212 +0,0 @@ -package edu.lu.uni.serval.livestudy; - -import java.io.File; -import java.io.FileInputStream; -import java.io.FileNotFoundException; -import java.io.IOException; -import java.util.ArrayList; -import java.util.HashMap; -import java.util.List; -import java.util.Map; -import java.util.Scanner; - -import edu.lu.uni.serval.FixPatternParser.Tokenizer; -import edu.lu.uni.serval.config.Configuration; -import edu.lu.uni.serval.gumtree.regroup.SimpleTree; -import edu.lu.uni.serval.utils.FileHelper; - -public class ParseViolations { - - private static final String OUTPUT_PATH = Configuration.ROOT_PATH + "LiveStudy/BugsInfo/"; - private static int i = 0; - private static int j = 0; - - public static void main(String[] args) { - // output path -// FileHelper.deleteDirectory(OUTPUT_PATH); - List projects = new ArrayList<>(); - File[] files = new File(OUTPUT_PATH).listFiles(); - for (File file : files) { - if (file.isDirectory()) { - projects.add(file.getName()); - } - } - String projectsPath = Configuration.ROOT_PATH + "LiveStudy/projects/"; - String bugsListPath = Configuration.ROOT_PATH + "LiveStudy/BugsList/"; - List bugsListFiles = FileHelper.getAllFiles(bugsListPath, ".list"); - for (File bugsListFile : bugsListFiles) { - String fileName = FileHelper.getFileNameWithoutExtension(bugsListFile); - if (projects.contains(fileName)) continue; - ParseViolations parser = new ParseViolations(); - Map violations = new HashMap<>(); // , Violation: >. - violations = parser.readViolations(bugsListFile); - parser.parseViolationToTokens(violations, projectsPath); - } - - System.out.println(i); - System.out.println(j); - } - - /** - * Get the source code tokens of all violation instances by visiting each java project. - * - * @param violations - * @param projectsPath - */ - public void parseViolationToTokens(Map violations, String projectsPath) { - for (Map.Entry entry : violations.entrySet()) { - String projectName = entry.getKey(); - List alarms = entry.getValue().getAlarms(); - List javaFiles = FileHelper.getAllFiles(projectsPath + projectName, ".java"); - - //Each violation: commons-math : DLS_DEAD_LOCAL_STORE : org/apache/commons/math4/dfp/Dfp.java : 2049 : 2049 - /** - * @ProjectName - * @ViolationType - * @FileName - * @LineNumber - * @SourceCode - * @Tokens - * @NumberOfTokens - */ - // sizes file, tokens file, and bugs-info file - StringBuilder sizesBuilder = new StringBuilder(); - StringBuilder tokensBuilder = new StringBuilder(); - StringBuilder bugsInfoBuilder = new StringBuilder(); - for (Alarm alarm : alarms) { - String fileName = alarm.getFileName(); -// if (fileName.toLowerCase(Locale.ENGLISH).contains("test")) continue; - - File sourceCodeFile = locateSourceCodeFile(javaFiles, fileName); - if (sourceCodeFile == null) { - j ++; - continue; - } - - Parser parser = new Parser(alarm, sourceCodeFile); - parser.parse(); - SimpleTree simpleTree = parser.getSimpleTree(); - - if (simpleTree != null) { - int finalStartLine = parser.getFinalStartLine(); - int finalEndLine = parser.getFinalEndLine(); - String violationType = alarm.getAlarmType(); - - String tokens = Tokenizer.getTokensDeepFirst(simpleTree); - String[] tokensArray = tokens.split(" "); - int length = tokensArray.length; - StringBuilder sourceCode = readSourceCode(sourceCodeFile, finalStartLine, finalEndLine); - - sizesBuilder.append(length).append("\n"); - tokensBuilder.append(tokens).append("\n"); - bugsInfoBuilder.append("###BugInstance###\n##Info:"); - bugsInfoBuilder.append(violationType).append(":"); - bugsInfoBuilder.append(projectName).append(":"); - bugsInfoBuilder.append(fileName).append(":"); - bugsInfoBuilder.append(finalStartLine).append(":"); - bugsInfoBuilder.append(finalEndLine).append("\n"); - bugsInfoBuilder.append(sourceCode).append("\n"); - i ++; - } else { - j ++; - } - } - - FileHelper.outputToFile(OUTPUT_PATH + "sizes.list", sizesBuilder, true); - FileHelper.outputToFile(OUTPUT_PATH + "tokens.list", tokensBuilder, true); - FileHelper.outputToFile(OUTPUT_PATH + "bugsInfo.list", bugsInfoBuilder, true); - } - } - - private StringBuilder readSourceCode(File javaFile, int startLine, int endLine) { - StringBuilder sourceCode = new StringBuilder("##Source_Code:\n"); - FileInputStream fis = null; - Scanner scanner = null; - - try { - fis = new FileInputStream(javaFile); - scanner = new Scanner(fis); - int counter = 0; - while (scanner.hasNextLine()) { - String line = scanner.nextLine(); - counter ++; - if (startLine <= counter && counter <= endLine) { - sourceCode.append(line + "\n"); - } - if (counter == endLine) break; - } - } catch (FileNotFoundException e) { - e.printStackTrace(); - } finally { - try { - scanner.close(); - fis.close(); - } catch (IOException e) { - e.printStackTrace(); - } - } - - return sourceCode; - } - - private File locateSourceCodeFile(List javaFiles, String fileName) { - for (File javaFile : javaFiles) { - if (javaFile.getPath().endsWith(fileName)) return javaFile; - } - return null; - } - - public Map readViolations(String violationFile) { - return readViolations(new File(violationFile)); - } - - public Map readViolations(File violationFile) { - Map violations = new HashMap<>(); - - FileInputStream fis = null; - Scanner scanner = null; - try { - fis = new FileInputStream(violationFile); - scanner = new Scanner(fis); - - while (scanner.hasNextLine()) { - //commons-math : DLS_DEAD_LOCAL_STORE : org/apache/commons/math4/dfp/Dfp.java : 2049 : 2049 - String line = scanner.nextLine(); - String[] elements = line.split(" : "); - String projectName = elements[0]; - String alarmType = elements[1]; - String fileName = elements[2]; - int startLine = Integer.parseInt(elements[3]); - int endLine = Integer.parseInt(elements[4]); - - Alarm alarm = new Alarm(alarmType, fileName, startLine, endLine); - addAlarmToViolations(projectName, alarm, violations); - } - } catch (FileNotFoundException e) { - e.printStackTrace(); - } finally { - try { - scanner.close(); - fis.close(); - } catch (IOException e) { - e.printStackTrace(); - } - } - - return violations; - } - - private void addAlarmToViolations(String projectName, Alarm alarm, Map violations) { - Violation violation = null; - if (violations.containsKey(projectName)) { - violation = violations.get(projectName); - } else { - violation = new Violation(projectName); - violations.put(projectName, violation); - } - - List alarms = violation.getAlarms(); - alarms.add(alarm); - } - -} diff --git a/src/main/java/edu/lu/uni/serval/livestudy/Parser.java b/src/main/java/edu/lu/uni/serval/livestudy/Parser.java deleted file mode 100644 index 93d1d30..0000000 --- a/src/main/java/edu/lu/uni/serval/livestudy/Parser.java +++ /dev/null @@ -1,84 +0,0 @@ -package edu.lu.uni.serval.livestudy; - -import java.io.File; -import java.util.ArrayList; -import java.util.List; - -import com.github.gumtreediff.tree.ITree; - -import edu.lu.uni.serval.gumtree.regroup.SimpleTree; -import edu.lu.uni.serval.gumtree.regroup.SimplifyTree; -import edu.lu.uni.serval.violation.code.parser.ViolationSourceCodeTree; - -public class Parser { - // input - private Alarm alarm; - private File sourceCodeFile; - - // output - private int finalStartLine = 0; - private int finalEndLine = 0; - private SimpleTree simpleTree = null; - - public Parser(Alarm alarm, File sourceCodeFile) { - this.alarm = alarm; - this.sourceCodeFile = sourceCodeFile; - } - - public int getFinalStartLine() { - return finalStartLine; - } - - public int getFinalEndLine() { - return finalEndLine; - } - - public SimpleTree getSimpleTree() { - return simpleTree; - } - - public void parse() { - int startLine = this.alarm.getStartLine(); - int endLine = this.alarm.getEndLine(); - - String violationType = this.alarm.getAlarmType(); - - ViolationSourceCodeTree treeParser = new ViolationSourceCodeTree(this.sourceCodeFile, startLine, endLine); - - if ("EQ_DOESNT_OVERRIDE_EQUALS".equals(violationType)|| "HE_EQUALS_USE_HASHCODE".equals(violationType) - || "HE_INHERITS_EQUALS_USE_HASHCODE".equals(violationType)|| "SE_NO_SUITABLE_CONSTRUCTOR".equals(violationType) - || "RI_REDUNDANT_INTERFACES".equals(violationType) || "CN_IDIOM".equals(violationType) - || "SE_NO_SERIALVERSIONID".equals(violationType) || "SE_COMPARATOR_SHOULD_BE_SERIALIZABLE".equals(violationType)) { - // Class name level, tokens - // classStartP <= vS <= vE <= classEndP - ITree classNameTree = treeParser.getClassNameTokens(); - if (classNameTree != null) { - this.simpleTree = new SimplifyTree().canonicalizeSourceCodeTree(classNameTree, null); - } else { - System.err.println("#Null_Violation_Hunk: " + this.alarm.getAlarmType() + ":" + this.sourceCodeFile.getPath() + ":" + startLine + ":" + endLine); - } - } else { - treeParser.extract(); - List matchedTrees = treeParser.getViolationSourceCodeTrees(); - if (matchedTrees.size() == 0) { - System.err.println("#Null_Violation_Hunk: " + this.alarm.getAlarmType() + ":" + this.sourceCodeFile.getPath() + ":" + startLine + ":" + endLine); - } else { - this.simpleTree = new SimpleTree(); - this.simpleTree.setLabel("Block"); - this.simpleTree.setNodeType("Block"); - List children = new ArrayList<>(); - for (ITree matchedTree : matchedTrees) { - SimpleTree simpleT = new SimplifyTree().canonicalizeSourceCodeTree(matchedTree, this.simpleTree); - children.add(simpleT); - } - this.simpleTree.setChildren(children); - } - } - - if (this.simpleTree != null) { - this.finalStartLine = treeParser.getViolationFinalStartLine(); - this.finalEndLine = treeParser.getViolationFinalEndLine(); - } - } - -} diff --git a/src/main/java/edu/lu/uni/serval/livestudy/README.md b/src/main/java/edu/lu/uni/serval/livestudy/README.md deleted file mode 100644 index bdda18e..0000000 --- a/src/main/java/edu/lu/uni/serval/livestudy/README.md +++ /dev/null @@ -1,6 +0,0 @@ -## Parse the violations of Live Study ## - -1. Localize bugs with FindBugs. -2. Parse results of FindBugs. (bug-type project.) - -3. Parse source code of violations. (ParseViolation.java) \ No newline at end of file diff --git a/src/main/java/edu/lu/uni/serval/livestudy/Violation.java b/src/main/java/edu/lu/uni/serval/livestudy/Violation.java deleted file mode 100644 index e6eaa2d..0000000 --- a/src/main/java/edu/lu/uni/serval/livestudy/Violation.java +++ /dev/null @@ -1,25 +0,0 @@ -package edu.lu.uni.serval.livestudy; - -import java.util.ArrayList; -import java.util.List; - -public class Violation { - - private String project; - private List alarms; - - public String getProject() { - return project; - } - - public List getAlarms() { - return alarms; - } - - public Violation(String project) { - super(); - this.project = project; - this.alarms = new ArrayList<>(); - } - -} diff --git a/src/main/java/edu/lu/uni/serval/parameters/ParseAlarms.java b/src/main/java/edu/lu/uni/serval/parameters/ParseAlarms.java deleted file mode 100644 index fe174b6..0000000 --- a/src/main/java/edu/lu/uni/serval/parameters/ParseAlarms.java +++ /dev/null @@ -1,145 +0,0 @@ -package edu.lu.uni.serval.parameters; - -import java.io.BufferedReader; -import java.io.File; -import java.io.IOException; -import java.io.StringReader; -import java.util.ArrayList; -import java.util.List; - -import com.github.gumtreediff.tree.ITree; - -import edu.lu.uni.serval.FixPatternParser.Tokenizer; -import edu.lu.uni.serval.FixPatternParser.violations.Violation; -import edu.lu.uni.serval.config.Configuration; -import edu.lu.uni.serval.gumtree.regroup.SimpleTree; -import edu.lu.uni.serval.gumtree.regroup.SimplifyTree; -import edu.lu.uni.serval.utils.FileHelper; -import edu.lu.uni.serval.violation.code.parser.ViolationSourceCodeTree; - -/** - * Prepare data for tuning parameters of deep learning models. - * - * @author kui.liu - * - */ -public class ParseAlarms { - - public static void main(String[] args) { - ParseAlarms parser = new ParseAlarms(); - - String outputPath = Configuration.ROOT_PATH + "TuneParameters/fixedAlarmTokens.list"; - String outputPath2 = Configuration.ROOT_PATH + "TuneParameters/EmptyStatement/fixedAlarmTokens.list"; - FileHelper.deleteFile(outputPath); - FileHelper.deleteFile(outputPath2); - int subIndex = 5; - String fixedAlarmFilesPath = Configuration.GUM_TREE_INPUT + "prevFiles/"; - String positionsFilePath = Configuration.GUM_TREE_INPUT + "positions/"; - parser.dataPreparation(fixedAlarmFilesPath, positionsFilePath, subIndex, outputPath, outputPath2); - - outputPath = Configuration.ROOT_PATH + "TuneParameters/unfixedAlarmTokens.list"; - outputPath2 = Configuration.ROOT_PATH + "TuneParameters/EmptyStatement/unfixedAlarmTokens.list"; - FileHelper.deleteFile(outputPath); - FileHelper.deleteFile(outputPath2); - subIndex = 8; - String unfixedAlarmFilesPath = Configuration.GUM_TREE_INPUT + "unfixAlarms/"; - String unfixedPositionsFilePath = Configuration.GUM_TREE_INPUT + "un_positions/"; - parser.dataPreparation(unfixedAlarmFilesPath, unfixedPositionsFilePath, subIndex, outputPath, outputPath2); - } - - public void dataPreparation(String sourceCodeFilePath, String positionFilePath, int subIndex, String outputPath, String outputPath2) { - StringBuilder tokensBuilder = new StringBuilder(); - List javaFiles = FileHelper.getAllFilesInCurrentDiectory(sourceCodeFilePath, ".java"); - int counter = 0; - int a = 0; - StringBuilder emptyStatements = new StringBuilder(); - StringBuilder sizes = new StringBuilder(); - for (File javaFile : javaFiles) { - String fileName = javaFile.getName().replace(".java", ".txt"); - fileName = fileName.substring(subIndex); - -// if (fileName.endsWith("apache-commons-configuration_8c42aa_8b26e6src#java#org#apache#commons#configuration#plist#XMLPropertyListConfiguration.txt")) { -// System.out.println(); -// } - - List violations = readViolations(positionFilePath + fileName); - - for (Violation violation : violations) { - int startLine = violation.getStartLineNum(); - int endLine = violation.getEndLineNum(); - String alarmType = violation.getViolationType(); - - if (endLine > startLine + 5) continue; - - ViolationSourceCodeTree alarmTree = new ViolationSourceCodeTree(javaFile, startLine, endLine); - alarmTree.extract(alarmType); - List matchedTrees = alarmTree.getViolationSourceCodeTrees(); - if (matchedTrees.size() == 0) { - emptyStatements.append(alarmType + "," + fileName + "," + startLine + "," + endLine + "\n"); - a ++; - continue; - } - SimpleTree simpleTree = new SimpleTree(); - simpleTree.setLabel("Block"); - simpleTree.setNodeType("Block"); - List children = new ArrayList<>(); - - for (ITree matchedTree : matchedTrees) { - SimpleTree simpleT = new SimplifyTree().canonicalizeSourceCodeTree(matchedTree, null); - children.add(simpleT); - } - simpleTree.setChildren(children); - - String tokens = Tokenizer.getTokensDeepFirst(simpleTree); - String[] tokensArray = tokens.split(" "); - int length = tokensArray.length; - sizes.append(length + "\n"); - tokensBuilder.append(alarmType + ":" + fileName + ":" + alarmTree.getViolationFinalStartLine() + ":" + alarmTree.getViolationFinalEndLine() + ":" + tokens + "\n"); - - counter ++; - if (counter % 10000 == 0) { - FileHelper.outputToFile(outputPath, tokensBuilder, true); - tokensBuilder.setLength(0); - } - } - } - - System.out.println("Volidated Instances: " + counter); - System.out.println("Empty Instances: " + a); - FileHelper.outputToFile(outputPath2, emptyStatements, false); - FileHelper.outputToFile(outputPath.replace(".list", "Sizes.csv"), sizes, false); - FileHelper.outputToFile(outputPath, tokensBuilder, true); - } - - private List readViolations(String file) { - List violations = new ArrayList<>(); - - String fileContent = FileHelper.readFile(file); - BufferedReader reader = null; - reader = new BufferedReader(new StringReader(fileContent)); - String line = null; - try { - while ((line = reader.readLine()) != null) { - String[] positionStr = line.split(":"); - int startLine = Integer.parseInt(positionStr[1]); - int endLine = Integer.parseInt(positionStr[2]); - - if (startLine == -1 || endLine == -1) { - continue; - } - String alarmType = positionStr[0]; - Violation violation = new Violation(startLine, endLine, alarmType); - violations.add(violation); - } - } catch (IOException e) { - e.printStackTrace(); - } finally { - try { - reader.close(); - } catch (IOException e) { - e.printStackTrace(); - } - } - return violations; - } -} diff --git a/src/main/java/edu/lu/uni/serval/statistics/.Rapp.history b/src/main/java/edu/lu/uni/serval/statistics/.Rapp.history deleted file mode 100644 index e69de29..0000000 diff --git a/src/main/java/edu/lu/uni/serval/statistics/Categories.java b/src/main/java/edu/lu/uni/serval/statistics/Categories.java deleted file mode 100644 index 0eea731..0000000 --- a/src/main/java/edu/lu/uni/serval/statistics/Categories.java +++ /dev/null @@ -1,75 +0,0 @@ -package edu.lu.uni.serval.statistics; - -import java.io.BufferedReader; -import java.io.IOException; -import java.io.StringReader; -import java.util.ArrayList; -import java.util.HashMap; -import java.util.List; -import java.util.Map; - -import edu.lu.uni.serval.config.Configuration; -import edu.lu.uni.serval.utils.FileHelper; - -public class Categories { - - public static void main(String[] args) throws IOException { - String content = FileHelper.readFile(Configuration.ROOT_PATH + "RQ1/Quantity-per-Fixed_1.0V-Type.csv");//"RQ1/Quantity-per-V-Type.csv"); - BufferedReader reader = new BufferedReader(new StringReader(content)); - String line = reader.readLine(); - int counter = 0; -// int size = 400; - Map map = new HashMap<>(); - map.put("Dodgy code", 0); - map.put("Experimental", 0); - map.put("Internationalization", 0); - map.put("Multithreaded correctness", 0); - map.put("Malicious code vulnerability", 0); - map.put("Performance", 0); - map.put("Correctness", 0); - map.put("Security", 0); - map.put("Bad practice", 0); - map.put("Other", 0); -// List list = new ArrayList<>(); - Map> map2 = new HashMap<>(); - map2.put("Dodgy code", new ArrayList()); - map2.put("Experimental", new ArrayList()); - map2.put("Internationalization", new ArrayList()); - map2.put("Multithreaded correctness", new ArrayList()); - map2.put("Malicious code vulnerability", new ArrayList()); - map2.put("Performance", new ArrayList()); - map2.put("Correctness", new ArrayList()); - map2.put("Security", new ArrayList()); - map2.put("Bad practice", new ArrayList()); - map2.put("Other", new ArrayList()); - while ((line = reader.readLine()) != null) { - String type = line.substring(line.lastIndexOf(",") + 1); - counter ++; - if (map.containsKey(type)) { - map.put(type, map.get(type) + 1); - } else { - map.put(type, 1); - } - if (counter % 10 == 0) { - for (Map.Entry> entry : map2.entrySet()) { - String type2 = entry.getKey(); - Integer integ = map.get(type2); - if (integ == null) { - map2.get(type2).add(0); - } else { - map2.get(type2).add(integ); - } - } -// System.out.println(); - } - } - reader.close(); - for (Map.Entry entry : map.entrySet()) { - System.out.println(entry.getKey() + "," + entry.getValue()); - } - for (Map.Entry> entry : map2.entrySet()) { - System.out.println(entry.getKey() + "," + entry.getValue()); - } - } - -} diff --git a/src/main/java/edu/lu/uni/serval/statistics/FixedProjects.java b/src/main/java/edu/lu/uni/serval/statistics/FixedProjects.java deleted file mode 100644 index 122cfab..0000000 --- a/src/main/java/edu/lu/uni/serval/statistics/FixedProjects.java +++ /dev/null @@ -1,26 +0,0 @@ -package edu.lu.uni.serval.statistics; - -import java.io.BufferedReader; -import java.io.IOException; -import java.io.StringReader; - -import edu.lu.uni.serval.utils.FileHelper; - -public class FixedProjects { - - public static void main(String[] args) throws IOException { - String content = FileHelper.readFile("../FPM_Violations/RQ1/Quantity-per-FixedProj.csv"); - BufferedReader reader = new BufferedReader(new StringReader(content)); - String line = reader.readLine(); - StringBuilder builder = new StringBuilder(); - while ((line = reader.readLine()) != null) { - String[] elements = line.split(","); -// String projectName = elements[0]; - builder.append(elements[0] + "\n"); - } - reader.close(); - - FileHelper.outputToFile("../FPM_Violations/RQ1/fixedProjects.list", builder, false); - } - -} diff --git a/src/main/java/edu/lu/uni/serval/statistics/FixedVilations.java b/src/main/java/edu/lu/uni/serval/statistics/FixedVilations.java deleted file mode 100644 index 95c8023..0000000 --- a/src/main/java/edu/lu/uni/serval/statistics/FixedVilations.java +++ /dev/null @@ -1,47 +0,0 @@ -package edu.lu.uni.serval.statistics; - -import java.io.FileInputStream; -import java.io.IOException; -import java.util.HashMap; -import java.util.Map; -import java.util.Scanner; - -import edu.lu.uni.serval.config.Configuration; -import edu.lu.uni.serval.utils.FileHelper; - -public class FixedVilations { - - public static void main(String[] args) throws IOException { - // projectName,ViolationType,Number. - FileInputStream fis = new FileInputStream(Configuration.ROOT_PATH + "RQ1/fixed-alarms-v1.0.list"); - Scanner scanner = new Scanner(fis); - Map map = new HashMap<>(); - int counter = 0; - while (scanner.hasNextLine()) { - String line = scanner.nextLine(); - String[] elements = line.split(":"); -// String violationType = elements[0]; -// String projectName = elements[1]; - String key = elements[1] + "," + elements[0]; - if (map.containsKey(key)) { - map.put(key, map.get(key)+ 1); - } else { - map.put(key, 1); - } - counter ++; - } - - scanner.close(); - fis.close(); - - System.out.println(counter); - StringBuilder builder = new StringBuilder(); - for (Map.Entry entry : map.entrySet()) { - builder.append(entry.getKey()).append(",").append(entry.getValue()).append("\n"); - counter -= entry.getValue(); - } - FileHelper.outputToFile(Configuration.ROOT_PATH + "RQ1/fixedViolations-v-1.0.csv", builder, false); - System.out.println(counter); - } - -} diff --git a/src/main/java/edu/lu/uni/serval/statistics/HunkSizeComputer.java b/src/main/java/edu/lu/uni/serval/statistics/HunkSizeComputer.java deleted file mode 100644 index ca5f4b5..0000000 --- a/src/main/java/edu/lu/uni/serval/statistics/HunkSizeComputer.java +++ /dev/null @@ -1,106 +0,0 @@ -package edu.lu.uni.serval.statistics; - -import java.io.BufferedReader; -import java.io.File; -import java.io.IOException; -import java.io.StringReader; -import java.util.ArrayList; -import java.util.HashMap; -import java.util.List; -import java.util.Map; - -import edu.lu.uni.serval.config.Configuration; -import edu.lu.uni.serval.utils.FileHelper; -import edu.lu.uni.serval.utils.ListSorter; - -public class HunkSizeComputer { - - public static void main(String[] args) throws IOException { - String violationsFilePath = Configuration.ROOT_PATH + "unFixedInstances/"; - sizes(violationsFilePath, ".list"); - } - - public static void sizes(String filePath, String fileType) throws NumberFormatException, IOException { - List unfixedAlarmFiles = FileHelper.getAllFilesInCurrentDiectory(filePath, fileType); - System.out.println(unfixedAlarmFiles.size()); - StringBuilder builder = new StringBuilder(); - int counter = 0; - int size = 0; - int i = 0; - List sizes = new ArrayList<>(); - Map map = new HashMap<>();// - for (File file : unfixedAlarmFiles) { - String content = FileHelper.readFile(file); - BufferedReader reader = new BufferedReader(new StringReader(content)); - String line = null; - while ((line = reader.readLine()) != null) { - String[] elements = line.split(","); - int startLine = Integer.parseInt(elements[4]); - int endLine = Integer.parseInt(elements[5]); - i ++; - if (startLine == -1 || endLine == -1) continue; - - int range = endLine - startLine + 1; - builder.append(range + "\n"); - if (range != 1) { - counter ++; - } - size ++; - sizes.add(range); - if (map.containsKey(range)) { - map.put(range, map.get(range) + 1); - } else { - map.put(range, 1); - } - } - reader.close(); - } - System.out.println(i); - - String content = FileHelper.readFile("Dataset/fixed-alarms-v1.0.list"); - BufferedReader reader = new BufferedReader(new StringReader(content)); - String line = null; - while ((line = reader.readLine()) != null) { - int arrowIndex = line.indexOf("=>"); - String buggyInfo = line.substring(0, arrowIndex); - String[] buggyElements = buggyInfo.split(":"); - - int startLine = Integer.parseInt(buggyElements[4]); - int endLine = Integer.parseInt(buggyElements[5]); - - if (startLine == -1 || endLine == -1) continue; - - int range = endLine - startLine + 1; - if (range != 1) { - counter ++; - } - builder.append(range + "\n"); - size ++; - sizes.add(range); - if (map.containsKey(range)) { - map.put(range, map.get(range) + 1); - } else { - map.put(range, 1); - } - } - reader.close(); - - FileHelper.outputToFile("Dataset/sizes.csv", builder, false); - - System.out.println(size); - System.out.println(counter); - ListSorter sorter = new ListSorter<>(sizes); - sizes = sorter.sortAscending(); - System.out.println(sizes.get((int) (sizes.size() * 0.7))); - System.out.println(sizes.get((int) (sizes.size() * 0.8))); - System.out.println(sizes.get((int) (sizes.size() * 0.9))); - System.out.println(sizes.get((int) (sizes.size() * 0.95))); - - int sum = 0; - for (i = 1; i <= 100; i ++) { - sum += map.get(i); - System.out.println(i + "," + String.format("%.2f", ((double) sum / size * 100))); - } - } - -} diff --git a/src/main/java/edu/lu/uni/serval/statistics/NumberOfFilesAndCodeLines.java b/src/main/java/edu/lu/uni/serval/statistics/NumberOfFilesAndCodeLines.java deleted file mode 100644 index 8a9fe38..0000000 --- a/src/main/java/edu/lu/uni/serval/statistics/NumberOfFilesAndCodeLines.java +++ /dev/null @@ -1,74 +0,0 @@ -package edu.lu.uni.serval.statistics; - -import java.io.File; -import java.io.FileInputStream; -import java.io.FileNotFoundException; -import java.io.IOException; -import java.util.List; -import java.util.Locale; -import java.util.Scanner; - -import edu.lu.uni.serval.config.Configuration; -import edu.lu.uni.serval.utils.FileHelper; - -/** - * Statistics of files and code lines of projects in Live Study. - * - * @author kui.liu - * - */ -public class NumberOfFilesAndCodeLines { - - public static void main(String[] args) { - String projectsPath = Configuration.ROOT_PATH + "LiveStudy/BugsInfo/"; - File[] projects = new File(projectsPath).listFiles(); - for (File project : projects) { - if (project.isDirectory()) { - if (project.getName().equals("poi")) - new NumberOfFilesAndCodeLines().statistic(project.getName()); - } - } - } - - public void statistic(String project) { - List javaFiles = FileHelper.getAllFiles(Configuration.ROOT_PATH + "LiveStudy/projects/" + project, ".java"); - int numberOfFiles = 0; - int LOC = 0; - for (File javaFile : javaFiles) { - if (!javaFile.getPath().toLowerCase(Locale.ENGLISH).contains("test")) { - numberOfFiles ++; - LOC += readLinesOfCode(javaFile); - } -// numberOfFiles ++; -// LOC += readLinesOfCode(javaFile); - } - System.out.println(project + " : Files = " + numberOfFiles + ", LOC = " + LOC); - } - - private int readLinesOfCode(File javaFile) { - int LOC = 0; - Scanner scanner = null; - FileInputStream fis = null; - try { - fis = new FileInputStream(javaFile); - scanner = new Scanner(fis); - - while (scanner.hasNextLine()) { - scanner.nextLine(); - LOC ++; - } - } catch (FileNotFoundException e) { - e.printStackTrace(); - } finally { - try { - scanner.close(); - fis.close(); - } catch (IOException e) { - e.printStackTrace(); - } - } - - return LOC; - } - -} diff --git a/src/main/java/edu/lu/uni/serval/statistics/ReadSpearmanResults.java b/src/main/java/edu/lu/uni/serval/statistics/ReadSpearmanResults.java deleted file mode 100644 index 9763c70..0000000 --- a/src/main/java/edu/lu/uni/serval/statistics/ReadSpearmanResults.java +++ /dev/null @@ -1,104 +0,0 @@ -package edu.lu.uni.serval.statistics; - -import java.io.BufferedReader; -import java.io.IOException; -import java.io.StringReader; - -import edu.lu.uni.serval.utils.FileHelper; - -public class ReadSpearmanResults { - - public static void main(String[] args) throws IOException { - String fileName = "../FPM_Violations/RQ1/SpearmanResults.list"; - String content = FileHelper.readFile(fileName); - BufferedReader reader = new BufferedReader(new StringReader(content)); - String line = null; - String str1 = "1"; - String str2 = "2"; - String str3 = "3"; - String str4 = "4"; - String str5 = "5"; - String str6 = "6"; - String str7 = "7"; - String str8 = "8"; - String str9 = "9"; - String str10 = "10"; - int counter = 0; - while ((line = reader.readLine()) != null) { -// String[] elements = line.split(""); - - counter ++; - - if ((counter / 10 == 2 || counter / 10 == 4) && counter % 10 == 1) { - str1 += "@@@@1"; - str2 += "@@@@2"; - str3 += "@@@@3"; - str4 += "@@@@4"; - str5 += "@@@@5"; - str6 += "@@@@6"; - str7 += "@@@@7"; - str8 += "@@@@8"; - str9 += "@@@@9"; - str10 += "@@@@10"; - } - - - int n = counter % 10; - switch (n) { - case 1: - str1 += "@" + line; - break; - case 2: - str2 += "@" + line; - break; - case 3: - str3 += "@" + line; - break; - case 4: - str4 += "@" + line; - break; - case 5: - str5 += "@" + line; - break; - case 6: - str6 += "@" + line; - break; - case 7: - str7 += "@" + line; - break; - case 8: - str8 += "@" + line; - break; - case 9: - str9 += "@" + line; - break; - case 0: - str10 += "@" + line; - break; - } - } - reader.close(); - - str1 = str1.replace(".", ","); - str2 = str2.replace(".", ","); - str3 = str3.replace(".", ","); - str4 = str4.replace(".", ","); - str5 = str5.replace(".", ","); - str6 = str6.replace(".", ","); - str7 = str7.replace(".", ","); - str8 = str8.replace(".", ","); - str9 = str9.replace(".", ","); - str10 = str10.replace(".", ","); - System.out.println(str1); - System.out.println(str2); - System.out.println(str3); - System.out.println(str4); - System.out.println(str5); - System.out.println(str6); - System.out.println(str7); - System.out.println(str8); - System.out.println(str9); - System.out.println(str10); - } - -} diff --git a/src/main/java/edu/lu/uni/serval/statistics/Spearman.R b/src/main/java/edu/lu/uni/serval/statistics/Spearman.R deleted file mode 100644 index 549ad42..0000000 --- a/src/main/java/edu/lu/uni/serval/statistics/Spearman.R +++ /dev/null @@ -1,362 +0,0 @@ -a <- read.csv("~/Public/git/FPM_Violations/RQ1/TenFolds-Q/Ten-fold-all-fixed-violation-type1-70.csv", header=T) -d<-cor.test( ~ X0 + X0.T, - data=a, method = "spearman", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = FALSE, sep = "@") - -d<-cor.test( ~ X1 + X1.T, - data=a, method = "spearman", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X2 + X2.T, - data=a, method = "spearman", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X3 + X3.T, - data=a, method = "spearman", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X4 + X4.T, - data=a, method = "spearman", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X5 + X5.T, - data=a, method = "spearman", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X6 + X6.T, - data=a, method = "spearman", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X7 + X7.T, - data=a, method = "spearman", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X8 + X8.T, - data=a, method = "spearman", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X9 + X9.T, - data=a, method = "spearman", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X0.R + X0.T.R, - data=a, method = "spearman", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X1.R + X1.T.R, - data=a, method = "spearman", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X2.R + X2.T.R, - data=a, method = "spearman", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X3.R + X3.T.R, - data=a, method = "spearman", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X4.R + X4.T.R, - data=a, method = "spearman", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X5.R + X5.T.R, - data=a, method = "spearman", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X6.R + X6.T.R, - data=a, method = "spearman", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X7.R + X7.T.R, - data=a, method = "spearman", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X8.R + X8.T.R, - data=a, method = "spearman", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X9.R + X9.T.R, - data=a, method = "spearman", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X0 + X0.T, - data=a, method = "pearson", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X1 + X1.T, - data=a, method = "pearson", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X2 + X2.T, - data=a, method = "pearson", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X3 + X3.T, - data=a, method = "pearson", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X4 + X4.T, - data=a, method = "pearson", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X5 + X5.T, - data=a, method = "pearson", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X6 + X6.T, - data=a, method = "pearson", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X7 + X7.T, - data=a, method = "pearson", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X8 + X8.T, - data=a, method = "pearson", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X9 + X9.T, - data=a, method = "pearson", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X0.R + X0.T.R, - data=a, method = "pearson", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X1.R + X1.T.R, - data=a, method = "pearson", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X2.R + X2.T.R, - data=a, method = "pearson", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X3.R + X3.T.R, - data=a, method = "pearson", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X4.R + X4.T.R, - data=a, method = "pearson", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X5.R + X5.T.R, - data=a, method = "pearson", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X6.R + X6.T.R, - data=a, method = "pearson", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X7.R + X7.T.R, - data=a, method = "pearson", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X8.R + X8.T.R, - data=a, method = "pearson", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X9.R + X9.T.R, - data=a, method = "pearson", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X0 + X0.T, - data=a, method = "kendall", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X1 + X1.T, - data=a, method = "kendall", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X2 + X2.T, - data=a, method = "kendall", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X3 + X3.T, - data=a, method = "kendall", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X4 + X4.T, - data=a, method = "kendall", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X5 + X5.T, - data=a, method = "kendall", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X6 + X6.T, - data=a, method = "kendall", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X7 + X7.T, - data=a, method = "kendall", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X8 + X8.T, - data=a, method = "kendall", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X9 + X9.T, - data=a, method = "kendall", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X0.R + X0.T.R, - data=a, method = "kendall", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X1.R + X1.T.R, - data=a, method = "kendall", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X2.R + X2.T.R, - data=a, method = "kendall", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X3.R + X3.T.R, - data=a, method = "kendall", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X4.R + X4.T.R, - data=a, method = "kendall", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X5.R + X5.T.R, - data=a, method = "kendall", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X6.R + X6.T.R, - data=a, method = "kendall", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X7.R + X7.T.R, - data=a, method = "kendall", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X8.R + X8.T.R, - data=a, method = "kendall", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -d<-cor.test( ~ X9.R + X9.T.R, - data=a, method = "kendall", - continuity = FALSE, - conf.level = 0.95) -write(c(d$estimate, d$p.value), file = "~/Public/git/FPM_Violations/RQ1/SpearmanResults.list",append = TRUE, sep = "@") - -a=1 diff --git a/src/main/java/edu/lu/uni/serval/statistics/SpearmanCodeGenerator.java b/src/main/java/edu/lu/uni/serval/statistics/SpearmanCodeGenerator.java deleted file mode 100644 index 055e522..0000000 --- a/src/main/java/edu/lu/uni/serval/statistics/SpearmanCodeGenerator.java +++ /dev/null @@ -1,81 +0,0 @@ -package edu.lu.uni.serval.statistics; - - -public class SpearmanCodeGenerator { - - public static void main(String[] args) { - generateSpearmanCode(); - } - - public static void generateSpearmanCode() { - for (int i = 0; i < 10; i ++) { - String s = "d<-cor.test( ~ X" + i + " + X" + i + ".T, \n"; - s += " data=a,"; - s += " method = \"spearman\",\n"; - s += " continuity = FALSE,\n"; - s += " conf.level = 0.95)\n"; - if (i == 0) { - s += "write(c(d$estimate, d$p.value), file = \"~/Public/git/FPM_Violations/RQ1/SpearmanResults.list\"," + - "append = FALSE, sep = \"@\")\n"; - } else { - s += "write(c(d$estimate, d$p.value), file = \"~/Public/git/FPM_Violations/RQ1/SpearmanResults.list\"," + - "append = TRUE, sep = \"@\")\n"; - } - - System.out.println(s); - } - for (int i = 0; i < 10; i ++) { - String s = "d<-cor.test( ~ X" + i + ".R + X" + i + ".T.R, \n"; - s += " data=a,"; - s += " method = \"spearman\",\n"; - s += " continuity = FALSE,\n"; - s += " conf.level = 0.95)\n"; - s += "write(c(d$estimate, d$p.value), file = \"~/Public/git/FPM_Violations/RQ1/SpearmanResults.list\"," + - "append = TRUE, sep = \"@\")\n"; - System.out.println(s); - } - - for (int i = 0; i < 10; i ++) { - String s = "d<-cor.test( ~ X" + i + " + X" + i + ".T, \n"; - s += " data=a,"; - s += " method = \"pearson\",\n"; - s += " continuity = FALSE,\n"; - s += " conf.level = 0.95)\n"; - s += "write(c(d$estimate, d$p.value), file = \"~/Public/git/FPM_Violations/RQ1/SpearmanResults.list\"," + - "append = TRUE, sep = \"@\")\n"; - System.out.println(s); - } - for (int i = 0; i < 10; i ++) { - String s = "d<-cor.test( ~ X" + i + ".R + X" + i + ".T.R, \n"; - s += " data=a,"; - s += " method = \"pearson\",\n"; - s += " continuity = FALSE,\n"; - s += " conf.level = 0.95)\n"; - s += "write(c(d$estimate, d$p.value), file = \"~/Public/git/FPM_Violations/RQ1/SpearmanResults.list\"," + - "append = TRUE, sep = \"@\")\n"; - System.out.println(s); - } - - for (int i = 0; i < 10; i ++) { - String s = "d<-cor.test( ~ X" + i + " + X" + i + ".T, \n"; - s += " data=a,"; - s += " method = \"kendall\",\n"; - s += " continuity = FALSE,\n"; - s += " conf.level = 0.95)\n"; - s += "write(c(d$estimate, d$p.value), file = \"~/Public/git/FPM_Violations/RQ1/SpearmanResults.list\"," + - "append = TRUE, sep = \"@\")\n"; - System.out.println(s); - } - for (int i = 0; i < 10; i ++) { - String s = "d<-cor.test( ~ X" + i + ".R + X" + i + ".T.R, \n"; - s += " data=a,"; - s += " method = \"kendall\",\n"; - s += " continuity = FALSE,\n"; - s += " conf.level = 0.95)\n"; - s += "write(c(d$estimate, d$p.value), file = \"~/Public/git/FPM_Violations/RQ1/SpearmanResults.list\"," + - "append = TRUE, sep = \"@\")\n"; - System.out.println(s); - } - } - -} diff --git a/src/main/java/edu/lu/uni/serval/statistics/Statistic.java b/src/main/java/edu/lu/uni/serval/statistics/Statistic.java deleted file mode 100644 index f1f1aae..0000000 --- a/src/main/java/edu/lu/uni/serval/statistics/Statistic.java +++ /dev/null @@ -1,947 +0,0 @@ -package edu.lu.uni.serval.statistics; - -import java.io.BufferedReader; -import java.io.File; -import java.io.FileInputStream; -import java.io.FileNotFoundException; -import java.io.IOException; -import java.io.StringReader; -import java.util.ArrayList; -import java.util.HashMap; -import java.util.List; -import java.util.Map; -import java.util.Scanner; - -import edu.lu.uni.serval.config.Configuration; -import edu.lu.uni.serval.utils.FileHelper; -import edu.lu.uni.serval.utils.ListSorter; -import edu.lu.uni.serval.utils.MapSorter; - -public class Statistic { - private static Map map1 = new HashMap(); - private static Map map2 = new HashMap<>(); - - public static void main(String[] args) throws IOException { - /* - * DM_DEFAULT_ENCODING - * NP_NONNULL_RETURN_VIOLATION - * NP_NULL_ON_SOME_PATH_FROM_RETURN_VALUE - * NP_PARAMETER_MUST_BE_NONNULL_BUT_MARKED_AS_NULLABLE - * ODR_OPEN_DATABASE_RESOURCE - * PZLA_PREFER_ZERO_LENGTH_ARRAYS - * RI_REDUNDANT_INTERFACES - * RV_RETURN_VALUE_IGNORED_BAD_PRACTICE - * RV_RETURN_VALUE_IGNORED_NO_SIDE_EFFECT - * SE_NO_SERIALVERSIONID - * SF_SWITCH_NO_DEFAULT - * SIC_INNER_SHOULD_BE_STATIC - * SQL_PREPARED_STATEMENT_GENERATED_FROM_NONCONSTANT_STRING - * UC_USELESS_CONDITION - * UC_USELESS_OBJECT - * UCF_USELESS_CONTROL_FLOW - * WMI_WRONG_MAP_ITERATOR - */ -// /* -// * Quantities' distribution of all violation types. -// */ -// quantityOfEachViolationType(); -// /* -// * Widespread of each violation type. -// */ -// widespreadOfEachViolationType(); -// /* -// * Statistics of categories of all violation types. -// */ -// statisticWithCategories(); -// -// /* -// * Quantity of each violation type in each project. -// */ -// reloadData(); -// -// /* -// * Quantities' distribution of all fixed violation types. -// * Widespread of each fixed violation type. -// * Statistics of categories of all fixed violation types. -// * Quantity of each fixed violation type in each project. -// */ -// statisticOfFixedViolations(); -// fixedVSunfixed(); - - /** - * Do statistics from two files: - */ - statistics("../FPM_Violations/RQ1/all-leafnodes-per-project-vtype.csv", "", map1, 16918530, 730); -// statistics("../FPM_Violations/RQ1/distinct-fixed-summary-per-project-vtype.csv", "Fixed"); - statistics("../FPM_Violations/RQ1/fixedViolations-v-1.0.csv", "Fixed_1.0", map2, 88927, 548); -// fixedVSunfixed(); - StringBuilder builder = new StringBuilder(); - for (Map.Entry entry : map1.entrySet()) { - String key = entry.getKey(); - builder.append(key + "," + entry.getValue() + "," + (map2.containsKey(key) ? map2.get(key) : 0) + "\n"); - } - FileHelper.outputToFile(Configuration.ROOT_PATH + "RQ2/quantity-ratios.csv", builder, false); - -// statisticsOfFixedViolations(); - - //rsync -avP gaia-cluster:/work/users/kliu/FixPattern/FPM_Violations/UnfixedViolations/BC_UNCONFIRMED_CAST/Sizes.list Sizes/Sizes1.list -// String s = "rsync -avP gaia-cluster:/work/users/kliu/FixPattern/FPM_Violations/UnfixedViolations_RQ3/"; -// File[] files = new File(Configuration.ROOT_PATH + "RQ3_1/UnfixedInstances/").listFiles(); -// int i = 0; -// for (File file : files) { -// if (file.getName().endsWith(".list")) { -// i ++; -// System.out.println(s + FileHelper.getFileNameWithoutExtension(file) + "/Sizes.list Sizes/Sizes" + i + ".list"); -// } -// } -// tokenSizes(); - } - - public static void tokenSizes() { - List sizes = new ArrayList<>(); - List files = FileHelper.getAllFilesInCurrentDiectory(Configuration.ROOT_PATH + "RQ3_1/Sizes/", ".list"); - StringBuilder builder = new StringBuilder(); - for (File file : files) { - try { - String content = FileHelper.readFile(file); - BufferedReader reader = new BufferedReader(new StringReader(content)); - String line = null; - while ((line = reader.readLine()) != null) { - sizes.add(Integer.parseInt(line)); - builder.append("1,").append(line).append("\n"); - } - reader.close(); - } catch (IOException e) { - e.printStackTrace(); - } - } - System.out.println(sizes.size()); - FileHelper.outputToFile(Configuration.ROOT_PATH + "RQ3_1/Sizes.csv", builder, false); - } - - public static void statisticsOfFixedViolations() { - String statistic = "../FPM_Violations/OUTPUT3/"; - List files = FileHelper.getAllFiles(statistic, ".list"); - - int positions = 0; - int numV = 0; - int testAlarms = 0; - int nullGumTreeResults = 0; - int nullMappingGumTreeResults = 0; - int pureDeletion = 0; - int timeout = 0; - int noSourceCodeChagnes = 0; - int largeHunk = 0; - int nullSourceCode = 0; - int noStatementChanges = 0; - int nullDiffentry = 0; - int TestingInfo = 0; - int i = 0; - Map types1 = new HashMap<>(); - for (File file : files) { - if (file.getName().startsWith("statistic")) { - String content = FileHelper.readFile(file); - BufferedReader reader = new BufferedReader(new StringReader(content)); - String line = null; - i ++; - try { - while ((line = reader.readLine()) != null) { - if (line.startsWith("Positions")) { - positions += Integer.parseInt(line.substring(line.lastIndexOf(":") + 1).trim()); - } else if (line.startsWith("NumViolations")) { - numV += Integer.parseInt(line.substring(line.lastIndexOf(":") + 1).trim()); - } else - if (line.startsWith("TestViolations")) { - testAlarms += Integer.parseInt(line.substring(line.lastIndexOf(":") + 1).trim()); - } else if (line.startsWith("NullGumTreeResults")) { - nullGumTreeResults += Integer.parseInt(line.substring(line.lastIndexOf(":") + 1).trim()); - } else if (line.startsWith("NoSourceCodeChanges")) { - noSourceCodeChagnes += Integer.parseInt(line.substring(line.lastIndexOf(":") + 1).trim()); - } else if (line.startsWith("NoStatementChanges")) { - noStatementChanges += Integer.parseInt(line.substring(line.lastIndexOf(":") + 1).trim()); - } else if (line.startsWith("NullDiffEntry")) { - nullDiffentry += Integer.parseInt(line.substring(line.lastIndexOf(":") + 1).trim()); - } else if (line.startsWith("NullMatchedGumTreeResults")) { - nullMappingGumTreeResults += Integer.parseInt(line.substring(line.lastIndexOf(":") + 1).trim()); - } else if (line.startsWith("PureDeletion")) { - pureDeletion += Integer.parseInt(line.substring(line.lastIndexOf(":") + 1).trim()); - } else if (line.startsWith("LargeHunk")) { - largeHunk += Integer.parseInt(line.substring(line.lastIndexOf(":") + 1).trim()); - } else if (line.startsWith("NullSourceCode")) { - nullSourceCode += Integer.parseInt(line.substring(line.lastIndexOf(":") + 1).trim()); - } else if (line.startsWith("Timeout")) { - timeout += Integer.parseInt(line.substring(line.lastIndexOf(":") + 1).trim()); - } else if (line.startsWith("TestingInfo")) { - TestingInfo +=Integer.parseInt(line.substring(line.lastIndexOf(":") + 1).trim()); - } - } - } catch (IOException e) { - e.printStackTrace(); - } finally { - try { - reader.close(); - } catch (IOException e) { - e.printStackTrace(); - } - } - } - - - if (file.getName().startsWith("UnfixedV")) { - String content = FileHelper.readFile(file); - BufferedReader reader = new BufferedReader(new StringReader(content)); - String line = null; - try { - while ((line = reader.readLine()) != null) { -// types1 - if (line.startsWith("## OAR [")) break; - String type = line.substring(0, line.indexOf(":")); - if (types1.containsKey(type)) { - types1.put(type, types1.get(type) + 1); - } else { - types1.put(type, 1); - } - if (line.startsWith("#NullSourceCode:")) { - System.out.println(line); - } - } - } catch(IOException e) { - e.printStackTrace(); - } finally { - try { - reader.close(); - } catch (IOException e) { - e.printStackTrace(); - } - } - } - } - - Map types = new HashMap<>(); -// FileInputStream fis = new FileInputStream("../FPM_Violations/OAR.FPM.4222208.stderr"); -// Scanner scanner = new Scanner(fis); -// while (scanner.hasNextLine()) { -// String line = scanner.nextLine(); -// if (line.startsWith("## OAR [")) break; -// String type = line.substring(0, line.indexOf(":")); -// if (types.containsKey(type)) { -// types.put(type, types.get(type) + 1); -// } else { -// types.put(type, 1); -// } -// } -// scanner.close(); -// fis.close(); -// int sum = 0; -// int sum2 = 0; -// for (Map.Entry entry : types.entrySet()) { -// System.out.println(entry.getKey() + ": " + entry.getValue()); -// if (!entry.getKey().startsWith("#PureDeletion")) { -// if (!entry.getKey().startsWith("#Timeout") && !entry.getKey().startsWith("#TestViolation")) -// sum += entry.getValue(); -// else sum2 += entry.getValue(); -// } -// } - int sum3 = 0; - int sum4 = 0; - int sum5 = 0; - for (Map.Entry entry : types1.entrySet()) { - System.out.println(entry.getKey() + ": " + entry.getValue()); - if (!entry.getKey().startsWith("#PureDeletion")) { - if (!entry.getKey().startsWith("#Timeout") && !entry.getKey().startsWith("#TestViolation")) - sum3 += entry.getValue(); - else sum4 += entry.getValue(); - sum5+= entry.getValue(); - } - } - System.out.println(sum5); - - System.out.println(i); - System.out.println("\n\nStatistics:\nPositions: " + positions); - System.out.println("NumViolations: " + numV); - System.out.println("\nTestViolation: " + testAlarms + " :: " + types.get("#TestViolation") + " :: " + types1.get("#TestViolation")); - System.out.println("NullGumTreeResults: " + nullGumTreeResults + " :: " + types.get("#NullGumTreeResults") + " :: " + types1.get("#NullGumTreeResults")); - System.out.println("NoSourceCodeChange: " + noSourceCodeChagnes + " :: " + types.get("#NoSourceCodeChange") + " :: " + types1.get("#NoSourceCodeChange")); - System.out.println("NoStatementChange: " + noStatementChanges + " :: " + types.get("#NoStatementChange") + " :: " + types1.get("#NoStatementChange")); - System.out.println("NullDiffEntry: " + nullDiffentry + " :: " + types.get("#NullDiffEntry") + " :: " + types1.get("#NullDiffEntry")); - System.out.println("NullMatchedGumTreeResult: " + nullMappingGumTreeResults + " :: " + types.get("#NullMatchedGumTreeResult") + " :: " + types1.get("#NullMatchedGumTreeResult")); - System.out.println("PureDeletion: " + pureDeletion + " :: " + types.get("#PureDeletion") + " :: " + types1.get("#PureDeletion")); - System.out.println("LargeHunk: " + largeHunk + " :: " + types.get("#LargeHunk") + " :: " + types1.get("#LargeHunk")); - System.out.println("NullSourceCode: " + nullSourceCode + " :: " + types.get("#NullSourceCode") + " :: " + types1.get("#NullSourceCode")); - System.out.println("Timeout: " + timeout + " :: " + types.get("#Timeout") + " :: " + types1.get("#Timeout")); - System.out.println("TestingInfo: " + TestingInfo + " :: " + types.get("#TestingInfo") + " :: " + types1.get("#TestingInfo")); -// System.out.println("A: " + (positions + testAlarms + timeout)); -// System.out.println("B: " + (numV + testAlarms + timeout)); - System.out.println(testAlarms + nullGumTreeResults + noSourceCodeChagnes + noStatementChanges + - nullDiffentry + nullMappingGumTreeResults + nullSourceCode + timeout + TestingInfo); -// System.out.println(nullGumTreeResults + noSourceCodeChagnes + noStatementChanges + -// nullDiffentry + nullMappingGumTreeResults + nullSourceCode + TestingInfo); -// System.out.println(testAlarms + timeout); -// System.out.println(sum); -// System.out.println(sum2); - System.out.println(sum3); - System.out.println(sum4); - System.out.println(types1); - /*32690 56237 ,, 88927 31782 - * Statistics: - -TestViolation: 4682 :: null :: null -NullGumTreeResults: 0 :: null :: null -NoSourceCodeChange: 7010 :: null :: 6984 -NoStatementChange: 163 :: null :: 163 -NullDiffEntry: 6943 :: null :: 6943 -NullMatchedGumTreeResult: 25747 :: null :: 25747 -PureDeletion: 10815 :: null :: 10815 -LargeHunk: 6318 :: null :: 6318 -NullSourceCode: 1025 :: null :: 1025 -Timeout: 0 :: null :: null -TestingInfo: 0 :: null :: null -A: 4682 -B: 4682 -51888 -47206 -4682 -47180 -0 - */ - } - - public static void statistics(String fileName, String type, Map map, int totalQ, int totalS) throws IOException { - FileInputStream fis = new FileInputStream(fileName); - Scanner scanner = new Scanner(fis); - - Map violationTypesMap = new HashMap<>(); - Map projectsMap = new HashMap<>(); - Map perVperProjMap = new HashMap<>(); - Map> perVProjs = new HashMap<>(); - Map> widespreadViolationsMap = new HashMap<>(); - - while (scanner.hasNextLine()) { - String line = scanner.nextLine(); - String[] elements = line.split(","); - String projectName = elements[0]; - String violationType = elements[1]; - int quantity = Integer.parseInt(elements[2]); - - addToMap(projectsMap, projectName, quantity); - addToMap(violationTypesMap, violationType, quantity); - addToMap(perVperProjMap, projectName + "," + violationType, quantity); - - if (widespreadViolationsMap.containsKey(violationType)) { - List projectList = widespreadViolationsMap.get(violationType); - if (!projectList.contains(projectName)) { - projectList.add(projectName); - } - } else { - List projectList = new ArrayList<>(); - projectList.add(projectName); - widespreadViolationsMap.put(violationType, projectList); - } - - if (perVProjs.containsKey(violationType)) { - perVProjs.get(violationType).add(projectName); - } else { - List projs = new ArrayList<>(); - projs.add(projectName); - perVProjs.put(violationType, projs); - } - } - - scanner.close(); - fis.close(); - - - // Category - MapSorter sorter = new MapSorter(); - violationTypesMap = sorter.sortByValueDescending(violationTypesMap); - projectsMap = sorter.sortByValueDescending(projectsMap); - - Map categories = new HashMap<>(); - Map> categoryVList = new HashMap<>(); - String content = FileHelper.readFile("../FPM_Violations/RQ1/ViolationCategory.list"); - BufferedReader reader = new BufferedReader(new StringReader(content)); - String line = null; - while ((line = reader.readLine()) != null) { - String[] elements = line.split("@@"); - categories.put(elements[1], elements[0]); // Violation type, category - } - reader.close(); - - // Sort Violation types by widespread. - Map widespreadOfAllViolations = new HashMap<>(); - for (Map.Entry> entry : widespreadViolationsMap.entrySet()) { - widespreadOfAllViolations.put(entry.getKey(), entry.getValue().size()); - } - widespreadOfAllViolations = sorter.sortByValueDescending(widespreadOfAllViolations); - StringBuilder wbuilder = new StringBuilder("Type,Identifier,Quantity,Category\n"); - int identifier1 = 0; - for (Map.Entry entry : widespreadOfAllViolations.entrySet()) { - identifier1 ++; - String violationType = entry.getKey(); - String category = categories.get(violationType); - if (category == null || category.equals("null")) { - category = "Other"; - } - wbuilder.append(violationType + "," + identifier1 + "," + entry.getValue() + "," + category + "\n"); - - if (categoryVList.containsKey(category)) { - categoryVList.get(category).add(violationType); - } else { - List list = new ArrayList<>(); - list.add(violationType); - categoryVList.put(category, list); - } - } - - FileHelper.outputToFile("../FPM_Violations/RQ1/Widespread-per-" + type + "V-Type.csv", wbuilder, false); - - // output statistics - List sortedViolationTypes = new ArrayList<>(); - - Map quantityOfCategory = new HashMap<>(); - Map> violationTypesOfCategory = new HashMap<>(); - Map> projectsOfCategory = new HashMap<>(); - StringBuilder violationsBuilder = new StringBuilder("Type,Identifier,Quantity,Ratio,Widespread,Ratio2, Categories\n"); - int identifier = 0; - for (Map.Entry entry : violationTypesMap.entrySet()) { - String violationType = entry.getKey(); - int quantity = entry.getValue(); - identifier ++; - String category = categories.get(violationType); - if (category == null || category.equals("null")) { - category = "Other"; - } - int spread = widespreadViolationsMap.get(violationType).size(); - violationsBuilder.append(violationType + "," + identifier + "," + quantity + "," + ((double) quantity / totalQ * 100) + "," - + spread + "," + ((double) spread / totalS * 100) + "," + category + "\n"); - - if (quantityOfCategory.containsKey(category)) { - quantityOfCategory.put(category, quantityOfCategory.get(category) + quantity); - } else { - quantityOfCategory.put(category, quantity); - } - - if (violationTypesOfCategory.containsKey(category)) { - List violationTypes = violationTypesOfCategory.get(category); - if (!violationTypes.contains(violationType)) { - violationTypes.add(violationType); - } - } else { - List violationTypes = new ArrayList<>(); - violationTypes.add(violationType); - violationTypesOfCategory.put(category, violationTypes); - } - - if (projectsOfCategory.containsKey(category)) { - List projs = projectsOfCategory.get(category); - List projs2 = perVProjs.get(violationType); - for (String proj : projs2) { - if (!projs.contains(proj)) { - projs.add(proj); - } - } - } else { - projectsOfCategory.put(category, perVProjs.get(violationType)); - } - - sortedViolationTypes.add(violationType); - - map.put(violationType, quantity); - } - FileHelper.outputToFile("../FPM_Violations/RQ1/Quantity-per-" + type + "V-Type.csv", violationsBuilder, false); - - StringBuilder pBuilder = new StringBuilder("Project,Quantity\n"); - List projectNames = new ArrayList<>(); - for (Map.Entry entry : projectsMap.entrySet()) { - String project = entry.getKey(); - pBuilder.append(project + "," + entry.getValue() + "\n"); - projectNames.add(project); - } - FileHelper.outputToFile("../FPM_Violations/RQ1/Quantity-per-" + type + "Proj.csv", pBuilder, false); - - StringBuilder categoryBuilder = new StringBuilder("Category,Quantity,Types,Projects\n"); - for (Map.Entry entry : quantityOfCategory.entrySet()) { - String key = entry.getKey(); - categoryBuilder.append(key + "," + entry.getValue() + "," + violationTypesOfCategory.get(key).size() + "," + projectsOfCategory.get(key).size() + "\n"); - } - FileHelper.outputToFile("../FPM_Violations/RQ1/Quantity-per-" + type + "Category.csv", categoryBuilder, false); - - StringBuilder builder = new StringBuilder("Projects"); - String a = ""; - String b = ""; - for (int i = 0; i < sortedViolationTypes.size(); i ++) { - builder.append("," + sortedViolationTypes.get(i)); - if (i < 50) { - a += "a$" + sortedViolationTypes.get(i) + ","; - b += "'" + (i + 1) + "',"; - } - } - builder.append("\n"); - System.out.println(a); - System.out.println(b); -// for (int i = 0; i < sortedViolationTypes.size(); i ++) { -// builder.append("," + i); -// } -// builder.append("\n"); - StringBuilder bui = new StringBuilder(); - for (int i = 0; i < projectNames.size(); i++) { - String projectName = projectNames.get(i); - builder.append(projectName); - - for (int j = 0; j < sortedViolationTypes.size(); j ++) { - String violationType = sortedViolationTypes.get(j); - String key = projectName + "," + violationType; - Integer value = perVperProjMap.get(key); - if (value == null) { - value = 0; - } else { - bui.append(projectName).append(",").append(violationType).append(",").append(value).append(",").append(categories.get(violationType) == null ? "Other" : categories.get(violationType)).append("\n"); - } - builder.append("," + value); - } - builder.append("\n"); - } - FileHelper.outputToFile("../FPM_Violations/RQ1/Distribution-per-project-per-" + type + "type.csv", builder, false); - FileHelper.outputToFile("../FPM_Violations/RQ1/Distribution-per-project-per-" + type + "type___.csv", bui, false); - - StringBuilder ssbuilder = new StringBuilder("Type, Identifier, Quantity, Category\n"); - Map perTypePerProj = new HashMap<>(); - Map> categoryProjects = new HashMap<>(); - - List others = new ArrayList<>(); - for (int j = 0; j < sortedViolationTypes.size(); j ++) { - String violationType = sortedViolationTypes.get(j); - List projs = new ArrayList<>(); - - for (int i = 0; i < projectNames.size(); i++) { - String projectName = projectNames.get(i); - String key = projectName + "," + violationType; - Integer value = perVperProjMap.get(key); - - if (value != null) { - String category = categories.get(violationType); - if (category == null || category.equals("null")) { - category = "Other"; - if (!others.contains(violationType)) { - others.add(violationType); - } - } - ssbuilder.append(violationType + "," + (j + 1) + "," + value + "," + category + "\n"); - - projs.add(value); - - if (categoryProjects.containsKey(category)) { - List projects = categoryProjects.get(category); - if (!projects.contains(projectName)) { - projects.add(projectName); - } - } else { - List projects = new ArrayList<>(); - projects.add(projectName); - categoryProjects.put(category, projects); - } - } - } - ListSorter sorter2 = new ListSorter(projs); - projs = sorter2.sortAscending(); - int index = projs.size() % 2 == 0 ? projs.size() / 2 - 1 : projs.size() / 2; - perTypePerProj.put(violationType, projs.get(index)); - } - - System.out.println(others); - - for (Map.Entry> entry : categoryVList.entrySet()) { - System.out.println(entry.getKey() + ":" + entry.getValue().size() + ":" + categoryProjects.get(entry.getKey()).size()); - } - - FileHelper.outputToFile("../FPM_Violations/RQ1/Distribution-per-project-per-" + type + "type2.csv", ssbuilder, false); - StringBuilder ssbuilder2 = new StringBuilder("Type, Identifier, Quantity, Category\n"); - perTypePerProj = sorter.sortByValueDescending(perTypePerProj); - int j = 0; - for (Map.Entry entry : perTypePerProj.entrySet()) { - String violationType = entry.getKey(); -// System.out.println(entry.getValue()); - j ++; - for (int i = 0; i < projectNames.size(); i++) { - String projectName = projectNames.get(i); - String key = projectName + "," + violationType; - Integer value = perVperProjMap.get(key); - - if (value != null) { - String category = categories.get(violationType); - if (category == null || category.equals("null")) { - category = "Other"; - } - ssbuilder2.append(violationType + "," + j + "," + value + "," + category + "\n"); - } - } - } - FileHelper.outputToFile("../FPM_Violations/RQ1/Distribution-per-project-per-" + type + "type3.csv", ssbuilder2, false); -// StringBuilder pVpPBuilder = new StringBuilder(); -// for (Map.Entry entry : perVperProjMap.entrySet()) { -// pVpPBuilder.append(entry.getKey() + "," + entry.getValue() + "\n"); -// } -// FileHelper.outputToFile("../FPM_Violations/RQ1/Per-project-per-" + type + "type.csv", pVpPBuilder, false); - } - - private static void addToMap(Map map, String key, int value) { - if (map.containsKey(key)) { - map.put(key, map.get(key) + value); - } else { - map.put(key, value); - } - } - - public static void quantityOfEachViolationType() { - Map violationQuantities = readTypeQuantityMap("../FPM_Violations/RQ1/distinct-per-vtype.csv"); - - Map violationWidespread = readWidespread("../FPM_Violations/RQ1/distinct-per-project-vtype.csv"); - - StringBuilder buidler = new StringBuilder("Violation Type, Identifier, Quantity, Quantity of Projects, Ratio\n"); - int identifier = 0; - double totality = 15961605d; - int sum = 0; - for (Map.Entry entry : violationQuantities.entrySet()) { - String key = entry.getKey(); - identifier ++; - int quantity = entry.getValue(); - sum += quantity; - buidler.append(key + "," + identifier + "," + quantity + "," + violationWidespread.get(key) + "," + (sum / totality) + "\n"); -// if (identifier >= 50) break; - } - FileHelper.outputToFile("../FPM_Violations/RQ1/Quantity-per-V-type.csv", buidler, false); - } - - public static void widespreadOfEachViolationType() { - Map violationWidespread = readWidespread("../FPM_Violations/RQ1/distinct-per-project-vtype.csv"); - System.out.println("Violation types: " + violationWidespread.size()); - - StringBuilder buidler = new StringBuilder("Violation Type, Identifier, Quantity of Projects\n"); - int identifier = 0; - for (Map.Entry entry : violationWidespread.entrySet()) { - identifier ++; - buidler.append(entry.getKey() + "," + identifier + "," + entry.getValue() + "\n"); -// if (identifier >= 50) break; - } - FileHelper.outputToFile("../FPM_Violations/RQ1/Widespread-per-V-type.csv", buidler, false); - } - - public static void statisticWithCategories() throws IOException { - Map categories = new HashMap<>(); - String content = FileHelper.readFile("../FPM_Violations/RQ1/ViolationCategory.list"); - BufferedReader reader = new BufferedReader(new StringReader(content)); - String line = null; - while ((line = reader.readLine()) != null) { - String[] elements = line.split("@@"); - categories.put(elements[1], elements[0]); // Violation type, category - } - reader.close(); - - Map quantityOfCategory = new HashMap<>(); - - String content2 = FileHelper.readFile("../FPM_Violations/RQ1/distinct-per-vtype.csv"); - reader = new BufferedReader(new StringReader(content2)); - line = reader.readLine(); - while ((line = reader.readLine()) != null) { - String[] elements = line.split(","); - String violationType = elements[0]; - int quantity = Integer.parseInt(elements[1]); - String category = categories.get(violationType); - if (quantityOfCategory.containsKey(category)) { - quantityOfCategory.put(category, quantityOfCategory.get(category) + quantity); - } else { - quantityOfCategory.put(category, quantity); - } - } - reader.close(); - - String categoryQuantity = "Category Type, Quantity\n"; - for (Map.Entry entry : quantityOfCategory.entrySet()) { - categoryQuantity += entry.getKey() + "," + entry.getValue() + "\n"; - } - - FileHelper.outputToFile("../FPM_Violations/RQ1/Quantity-per-Category.csv", categoryQuantity, false); - } - - public static void reloadData() { - // ordered projects by quantity of violations - Map projectQuantities = readTypeQuantityMap("../FPM_Violations/RQ1/distinct-per-project.csv"); - List projectNames = new ArrayList<>(); - for (Map.Entry entry : projectQuantities.entrySet()) { - projectNames.add(entry.getKey()); - } - - // get ordered types by quantity of violations. - Map violations = readTypeQuantityMap("../FPM_Violations/RQ1/distinct-per-vtype.csv"); - List violationTypes = new ArrayList<>(); - for (Map.Entry entry : violations.entrySet()) { - violationTypes.add(entry.getKey()); - } - - Map perVperProjs = readData("../FPM_Violations/RQ1/distinct-per-project-vtype.csv"); - - StringBuilder builder = new StringBuilder("Projects"); - for (int i = 0; i < violationTypes.size(); i ++) { - builder.append("," + violationTypes.get(i)); - } - builder.append("\n"); - for (int i = 0; i < projectNames.size(); i++) { - String projectName = projectNames.get(i); - builder.append(projectName); - for (int j = 0; j < violationTypes.size(); j ++) { - String violationType = violationTypes.get(j); - String key = projectName + "," + violationType; - String value = perVperProjs.get(key); - if (value == null) { - value = "0"; - } - builder.append("," + value); - - } - builder.append("\n"); - } - FileHelper.outputToFile("../FPM_Violations/RQ1/Distribution-per-project-per-type.csv", builder, false); - } - - public static void statisticOfFixedViolations() throws IOException { - String fileName = "../FPM_Violations/RQ1/fixed-alarms-v1.0.list"; - FileInputStream fis = new FileInputStream(fileName); - Scanner scanner = new Scanner(fis); - - Map violations = new HashMap<>(); - Map projects = new HashMap<>(); - Map perVperPro = new HashMap<>(); - Map> widespreadFixedV = new HashMap<>(); - while (scanner.hasNextLine()) { - String line = scanner.nextLine(); - String[] elements = line.split(":"); - String violationType = elements[0]; - String projectName = elements[1]; - - if (violations.containsKey(violationType)) { - violations.put(violationType, violations.get(violationType) + 1); - } else { - violations.put(violationType, 1); - } - - if (projects.containsKey(projectName)) { - projects.put(projectName, projects.get(projectName) + 1); - } else { - projects.put(projectName, 1); - } - - String perVperProj = projectName + "," + violationType; - if (perVperPro.containsKey(perVperProj)) { - perVperPro.put(perVperProj, perVperPro.get(perVperProj) + 1); - } else { - perVperPro.put(perVperProj, 1); - } - - if (widespreadFixedV.containsKey(violationType)) { - List projectList = widespreadFixedV.get(violationType); - if (!projectList.contains(projectName)) { - projectList.add(projectName); - } - } else { - List projectList = new ArrayList<>(); - projectList.add(projectName); - widespreadFixedV.put(violationType, projectList); - } - } - - scanner.close(); - fis.close(); - - MapSorter sorter = new MapSorter(); - violations = sorter.sortByValueDescending(violations); - projects = sorter.sortByValueDescending(projects); - - Map categories = new HashMap<>(); - String content = FileHelper.readFile("../FPM_Violations/RQ1/ViolationCategory.list"); - BufferedReader reader = new BufferedReader(new StringReader(content)); - String line = null; - while ((line = reader.readLine()) != null) { - String[] elements = line.split("@@"); - categories.put(elements[1], elements[0]); // Violation type, category - } - reader.close(); - - List violationTypes = new ArrayList<>(); - - Map quantityOfCategory = new HashMap<>(); - StringBuilder violationsBuilder = new StringBuilder(); - for (Map.Entry entry : violations.entrySet()) { - String violationType = entry.getKey(); - int quantity = entry.getValue(); - - violationsBuilder.append(violationType + "," + quantity + "," + widespreadFixedV.get(violationType).size() + "\n"); - - String category = categories.get(violationType); - if (quantityOfCategory.containsKey(category)) { - quantityOfCategory.put(category, quantityOfCategory.get(category) + quantity); - } else { - quantityOfCategory.put(category, quantity); - } - - violationTypes.add(violationType); - } - FileHelper.outputToFile("../FPM_Violations/RQ1/Quantity-per-FixedV-Type.csv", violationsBuilder, false); - - StringBuilder pBuilder = new StringBuilder(); - List projectNames = new ArrayList<>(); - for (Map.Entry entry : projects.entrySet()) { - String project = entry.getKey(); - pBuilder.append(project + "," + entry.getValue() + "\n"); - projectNames.add(project); - } - FileHelper.outputToFile("../FPM_Violations/RQ1/Quantity-per-FixedV-Proj.csv", pBuilder, false); - - StringBuilder categoryBuilder = new StringBuilder(); - for (Map.Entry entry : quantityOfCategory.entrySet()) { - categoryBuilder.append(entry.getKey() + "," + entry.getValue() + "\n"); - } - FileHelper.outputToFile("../FPM_Violations/RQ1/Quantity-per-Fixed-Category.csv", categoryBuilder, false); - - StringBuilder builder = new StringBuilder("Projects"); - for (int i = 0; i < violationTypes.size(); i ++) { - builder.append("," + violationTypes.get(i)); - if (i < 500) { - } - } - builder.append("\n"); - for (int i = 0; i < projectNames.size(); i++) { - String projectName = projectNames.get(i); - builder.append(projectName); - for (int j = 0; j < violationTypes.size(); j ++) { - String violationType = violationTypes.get(j); - String key = projectName + "," + violationType; - Integer value = perVperPro.get(key); - if (value == null) { - value = 0; - } - builder.append("," + value); - } - builder.append("\n"); - } - FileHelper.outputToFile("../FPM_Violations/RQ1/Distribution-per-project-per-Fixed-type.csv", builder, false); - - StringBuilder pVpPBuilder = new StringBuilder(); - for (Map.Entry entry : perVperPro.entrySet()) { - pVpPBuilder.append(entry.getKey() + "," + entry.getValue() + "\n"); - } - FileHelper.outputToFile("../FPM_Violations/RQ1/Per-project-per-Fixed-type.csv", pVpPBuilder, false); - } - - public static void fixedVSunfixed() throws IOException { - String fileName = "../FPM_Violations/RQ1/Quantity-per-V-type.csv"; // all violations - Map allViolations = readTypeQuantityMap(fileName); - String file = "../FPM_Violations/RQ1/Quantity-per-FixedV-Type.csv"; // fixed violations - Map fixedViolations = readTypeQuantityMap(file); - - MapSorter sorter = new MapSorter<>(); - allViolations = sorter.sortByValueDescending(allViolations); - StringBuilder builder = new StringBuilder("Type,fixed,unfixed,all,fixed Ratio,unfixed Ratio\n"); - for (Map.Entry entry : allViolations.entrySet()) { - String violationType = entry.getKey(); - int quantity = entry.getValue(); - Integer fixedQuantity = fixedViolations.get(violationType); - if (fixedQuantity == null) { - builder.append(violationType + "," + 0 + "," + quantity + "," + quantity + ",0.0,1\n"); - } else { - builder.append(violationType + "," + fixedQuantity + "," + (quantity) - + "," + quantity + "," + ((double)fixedQuantity) / ((double) quantity) - + "," + ((double)(quantity)) / ((double) quantity) + "\n"); - } - } - FileHelper.outputToFile("../FPM_Violations/RQ1/Distribution-per-Fixed-type-VS-per-unFixed-type.csv", builder, false); - } - - private static Map readData(String fileName) { - Map perVperPros = new HashMap<>(); - FileInputStream fis = null; - Scanner scanner = null; - try { - fis = new FileInputStream(fileName); - scanner = new Scanner(fis); - while (scanner.hasNextLine()) { - String line = scanner.nextLine(); - String[] elements = line.split(","); - String key = elements[0] + "," + elements[1]; - String value = elements[2]; - perVperPros.put(key, value); - } - } catch (FileNotFoundException e) { - e.printStackTrace(); - } finally { - try { - scanner.close(); - fis.close(); - } catch (IOException e) { - e.printStackTrace(); - } - } - - return perVperPros; - } - - private static Map readTypeQuantityMap(String fileName) { - Map map = new HashMap<>(); - String fileContent = FileHelper.readFile(fileName); - BufferedReader reader = new BufferedReader(new StringReader(fileContent)); - - try { - String line= reader.readLine(); - while ((line = reader.readLine()) != null) { - String[] elements = line.split(","); - map.put(elements[0], Integer.valueOf(elements[2])); - } - } catch (IOException e) { - e.printStackTrace(); - } finally { - try { - reader.close(); - } catch (IOException e) { - e.printStackTrace(); - } - } - - MapSorter sorter = new MapSorter<>(); - map = sorter.sortByValueDescending(map); - return map; - } - - private static Map readWidespread(String fileName) { - Map violationWidespread = new HashMap(); - - String fileContent = FileHelper.readFile(fileName); - BufferedReader reader = new BufferedReader(new StringReader(fileContent)); - - try { - String line = null; - while ((line = reader.readLine()) != null) { - String[] strArray = line.split(","); - String key = strArray[1]; - if (violationWidespread.containsKey(key)) { - violationWidespread.put(key, violationWidespread.get(key) + 1); - } else { - violationWidespread.put(key, 1); - } - -// String[] elements = line.split(","); -// violationWidespread.put(elements[0], Integer.valueOf(elements[1])); - } - } catch (IOException e) { - e.printStackTrace(); - } finally { - try { - reader.close(); - } catch (IOException e) { - e.printStackTrace(); - } - } - - MapSorter sorter = new MapSorter<>(); - violationWidespread = sorter.sortByValueDescending(violationWidespread); - return violationWidespread; - } -} diff --git a/src/main/java/edu/lu/uni/serval/statistics/TenFoldPossibilities.java b/src/main/java/edu/lu/uni/serval/statistics/TenFoldPossibilities.java deleted file mode 100644 index 58b276a..0000000 --- a/src/main/java/edu/lu/uni/serval/statistics/TenFoldPossibilities.java +++ /dev/null @@ -1,243 +0,0 @@ -package edu.lu.uni.serval.statistics; - -import java.io.BufferedReader; -import java.io.File; -import java.io.IOException; -import java.io.StringReader; -import java.util.ArrayList; -import java.util.HashMap; -import java.util.List; -import java.util.Map; - -import edu.lu.uni.serval.utils.FileHelper; -import edu.lu.uni.serval.utils.MapSorter; - -public class TenFoldPossibilities { - - public static void main(String[] args) throws IOException { - rankingInTenFolds("../FPM_Violations/RQ1/TenFolds/", "../FPM_Violations/RQ1/Quantity-per-V-type.csv", "TenFolds"); // ten folds of all projects. - rankingInTenFolds("../FPM_Violations/RQ1/FixedTenFolds-1/", "../FPM_Violations/RQ1/Quantity-per-FixedV-Type.csv", "FixedTenFolds-1");// all fixed violation types are contained. - } - - public static void rankingInTenFolds(String tenFoldFiles, String typeFile, String outputPath) throws NumberFormatException, IOException { - List files = FileHelper.getAllFilesInCurrentDiectory(tenFoldFiles, ".list"); - - Map> tenFoldsOfAllViolationTypes = new HashMap<>(); - Map> tenFoldsOfAllFixedViolationTypes1 = new HashMap<>(); - Map> tenFoldsOfAllFixedViolationTypes2 = new HashMap<>(); - Map> testingTenFoldsOfAllViolationTypes = new HashMap<>(); - Map> testingTenFoldsOfAllFixedViolationTypes1 = new HashMap<>(); - Map> testingTenFoldsOfAllFixedViolationTypes2 = new HashMap<>(); - for (int i = 0; i < 10; i ++) { - List projects = selectPorjects(files, i); - - // the distribution of all violation types in these 9 sub-sets. - Map violations = new HashMap<>(); - int quantityOfAllViolations = readViolationsPerProject(violations, projects, "../FPM_Violations/RQ1/all-leafnodes-per-project-vtype.csv"); - // the distribution of all fixed violation types in these 9 sub-sets. - Map fixedViolations = new HashMap<>(); - int quantityOfAllFixedViolations = readViolationsPerProject(fixedViolations, projects, "../FPM_Violations/RQ1/distinct-fixed-summary-per-project-vtype.csv"); - - // Ratio of each violation type in all violations. - Map ratioOfEachViolationType = new HashMap<>(); // ratio of each violation type - Map ratioOfEachFixedViolationType1 = new HashMap<>(); // quantity of each fixed violation type / quantity of each violation type. - Map ratioOfEachFixedViolationType2 = new HashMap<>(); // quantity of each fixed violation type / quantityOfAllFixedViolations - - for (Map.Entry entry : violations.entrySet()) { - String violationType = entry.getKey(); - int quantity = entry.getValue(); - double ratio = (double) quantity / quantityOfAllViolations; - ratioOfEachViolationType.put(violationType, ratio); - - if (fixedViolations.containsKey(violationType)) { - int quantity1 = fixedViolations.get(violationType); - double ratio1 = (double)quantity1 / quantity; - double ratio2 = (double)quantity1 / quantityOfAllFixedViolations; - ratioOfEachFixedViolationType1.put(violationType, ratio1); - ratioOfEachFixedViolationType2.put(violationType, ratio2); - } else { - ratioOfEachFixedViolationType1.put(violationType, 0d); - } - } - - tenFoldsOfAllViolationTypes.put(i, ratioOfEachViolationType); - tenFoldsOfAllFixedViolationTypes1.put(i, ratioOfEachFixedViolationType1); - tenFoldsOfAllFixedViolationTypes2.put(i, ratioOfEachFixedViolationType2); - - - // Testing Data - List testingProjects = readList(files.get(i)); - Map testingViolations = new HashMap<>(); - int testingQuantitifOfAllViolations = readViolationsPerProject(testingViolations, testingProjects, "../FPM_Violations/RQ1/all-leafnodes-per-project-vtype.csv"); - Map testingFixedViolations = new HashMap<>(); - int testingQuantityOfAllFixedViolations = readViolationsPerProject(testingFixedViolations, testingProjects, "../FPM_Violations/RQ1/distinct-fixed-summary-per-project-vtype.csv"); - - Map testingRatioOfEachViolationType = new HashMap<>(); - Map testingRatioOfEachFixedViolationType1 = new HashMap<>(); - Map testingRatioOfEachFixedViolationType2 = new HashMap<>(); - - for (Map.Entry entry : testingViolations.entrySet()) { - String violationType = entry.getKey(); - int quantity = entry.getValue(); - double ratio = (double) quantity / testingQuantitifOfAllViolations; - - testingRatioOfEachViolationType.put(violationType, ratio); - if (testingFixedViolations.containsKey(violationType)) { - int quantity1 = testingFixedViolations.get(violationType); - testingRatioOfEachFixedViolationType1.put(violationType, (double)quantity1 / quantity); - testingRatioOfEachFixedViolationType2.put(violationType, (double)quantity1 / testingQuantityOfAllFixedViolations); - } else { - testingRatioOfEachFixedViolationType1.put(violationType, 0d); - } - } - testingTenFoldsOfAllViolationTypes.put(i, testingRatioOfEachViolationType); - testingTenFoldsOfAllFixedViolationTypes1.put(i, testingRatioOfEachFixedViolationType1); - testingTenFoldsOfAllFixedViolationTypes2.put(i, testingRatioOfEachFixedViolationType2); - } - - List violationTypes = readTypes(typeFile); - outputTenFolds(tenFoldsOfAllViolationTypes, testingTenFoldsOfAllViolationTypes, violationTypes, "../FPM_Violations/RQ1/" + outputPath + "/Ten-fold-all-violation-type.csv"); - outputTenFolds(tenFoldsOfAllFixedViolationTypes1, testingTenFoldsOfAllFixedViolationTypes1, violationTypes, "../FPM_Violations/RQ1/" + outputPath + "/Ten-fold-all-fixed-violation-type1.csv"); - outputTenFolds(tenFoldsOfAllFixedViolationTypes2, testingTenFoldsOfAllFixedViolationTypes2, violationTypes, "../FPM_Violations/RQ1/" + outputPath + "/Ten-fold-all-fixed-violation-type2.csv"); - } - - private static List readTypes(String fileName) throws IOException { - List violationTypes = new ArrayList<>(); - String content = FileHelper.readFile(fileName); - BufferedReader reader = new BufferedReader(new StringReader(content)); - String line = reader.readLine(); - while ((line = reader.readLine()) != null) { - String[] elements = line.split(","); - violationTypes.add(elements[0]); - } - reader.close(); - return violationTypes; - } - - private static void outputTenFolds(Map> ratiosMap, Map> testingMap, List violationTypes, String fileName) { - StringBuilder builder = new StringBuilder("Violatype, 0, 0-R, 0-T, 0-T-R, 1, 1-R, 1-T, 1-T-R, 2, 2-R, 2-T, 2-T-R, 3, 3-R, 3-T, 3-T-R, 4, 4-R, 4-T, 4-T-R, 5, 5-R, 5-T, 5-T-R, 6, 6-R, 6-T, 6-T-R, 7, 7-R, 7-T, 7-T-R, 8, 8-R, 8-T, 8-T-R, 9, 9-R, 9-T, 9-T-R\n"); - - Map> ratiosRankingMap = new HashMap<>(); - Map> testingDataRankingMap = new HashMap<>(); - - for (String type : violationTypes) { - builder.append(type); - for (int i = 0; i < 10; i ++) { - Map ratios = ratiosMap.get(i); - Map testingData = testingMap.get(i); - - Map ratiosRanking; - Map testingDataRanking; - if (!ratiosRankingMap.containsKey(i)) { - ratiosRanking = rankAlarmTypes(ratios); - testingDataRanking = rankAlarmTypes(testingData); - } else { - ratiosRanking = ratiosRankingMap.get(i); - testingDataRanking = testingDataRankingMap.get(i); - } - - - if (ratios.containsKey(type)) { - builder.append(", " + ratios.get(type));//.toString().replace(".", ",") - } else { - builder.append(", 0.0"); - } - if (ratiosRanking.containsKey(type)) { - builder.append(", " + ratiosRanking.get(type)); - } else { - builder.append(", " + (ratiosRanking.size() + 1)); - } - if (testingData.containsKey(type)) { - builder.append(", " + testingData.get(type)); - } else { - builder.append(", 0.0"); - } - if (testingDataRanking.containsKey(type)) { - builder.append(", " + testingDataRanking.get(type)); - } else { - builder.append(", " + (testingDataRanking.size() + 1)); - } - } - builder.append("\n"); - } - FileHelper.outputToFile(fileName, builder, false); - } - - private static Map rankAlarmTypes(Map possibilityMap) { - MapSorter sorter = new MapSorter<>(); - possibilityMap = sorter.sortByValueDescending(possibilityMap); - Map ranking = new HashMap<>(); - int ranker = 0; - double possibility = 0; - for (Map.Entry entry : possibilityMap.entrySet()) { - String alarmType = entry.getKey(); - double value = entry.getValue(); - if (possibility != value) { - ranker = ranking.size() + 1; - } - ranking.put(alarmType, ranker); - } - return ranking; - } - - private static int readViolationsPerProject(Map violations, List projects, String fileName) throws NumberFormatException, IOException { - int quantityOfAllViolations = 0; - - String content = FileHelper.readFile(fileName); - BufferedReader reader = new BufferedReader(new StringReader(content)); - String line = null; - while ((line = reader.readLine()) != null) { - String[] elements = line.split(","); - String projectName = elements[0]; - if (projects.contains(projectName)) { - String alarmType = elements[1]; - int quantity = Integer.parseInt(elements[2]); - - quantityOfAllViolations += quantity; - if (violations.containsKey(alarmType)) { - violations.put(alarmType, violations.get(alarmType) + quantity); - } else { - violations.put(alarmType, quantity); - } - } - } - reader.close(); - return quantityOfAllViolations; - } - - private static List selectPorjects(List files, int i) { - List projects = new ArrayList<>(); - for (File file : files) { - if (file.getName().equals("Fold_" + i + ".list")) { - continue; - } - - projects.addAll(readList(file)); - } - return projects; - } - - private static List readList(File file) { - List projects = new ArrayList<>(); - - String content = FileHelper.readFile(file); - BufferedReader reader = new BufferedReader(new StringReader(content)); - String line = null; - try { - while ((line = reader.readLine()) != null) { - projects.add(line); - } - } catch (IOException e) { - e.printStackTrace(); - } finally { - try { - reader.close(); - } catch (IOException e) { - e.printStackTrace(); - } - } - - return projects; - } - -} diff --git a/src/main/java/edu/lu/uni/serval/statistics/TenFoldPossibilities2.java b/src/main/java/edu/lu/uni/serval/statistics/TenFoldPossibilities2.java deleted file mode 100644 index 96ba1b6..0000000 --- a/src/main/java/edu/lu/uni/serval/statistics/TenFoldPossibilities2.java +++ /dev/null @@ -1,256 +0,0 @@ -package edu.lu.uni.serval.statistics; - -import java.io.BufferedReader; -import java.io.File; -import java.io.IOException; -import java.io.StringReader; -import java.util.ArrayList; -import java.util.HashMap; -import java.util.List; -import java.util.Map; - -import edu.lu.uni.serval.utils.FileHelper; -import edu.lu.uni.serval.utils.MapSorter; - -/** - * Fixed violation types are selected by their widespread. - * - * @author kui.liu - * - */ -public class TenFoldPossibilities2 { - - public static void main(String[] args) throws IOException { - rankingInTenFolds("../FPM_Violations/RQ1/FixedTenFolds-W/", "../FPM_Violations/RQ1/Widespread-per-FixedV-Type.csv", "FixedTenFolds-W"); - } - - public static void rankingInTenFolds(String tenFoldFiles, String typeFile, String outputPath) throws NumberFormatException, IOException { - int topNumber = 10; - List violationTypes = readTypes(typeFile, topNumber); - - List files = FileHelper.getAllFilesInCurrentDiectory(tenFoldFiles, ".list"); - - Map> tenFoldsOfAllViolationTypes = new HashMap<>(); - Map> tenFoldsOfAllFixedViolationTypes1 = new HashMap<>(); - Map> tenFoldsOfAllFixedViolationTypes2 = new HashMap<>(); - Map> testingTenFoldsOfAllViolationTypes = new HashMap<>(); - Map> testingTenFoldsOfAllFixedViolationTypes1 = new HashMap<>(); - Map> testingTenFoldsOfAllFixedViolationTypes2 = new HashMap<>(); - for (int i = 0; i < 10; i ++) { - List projects = selectPorjects(files, i); - - // all violations in these 9 sub-sets. - Map violations = new HashMap<>(); - int quantityOfAllViolations = readViolationsPerProject(violationTypes, violations, projects, "../FPM_Violations/RQ1/all-leafnodes-per-project-vtype.csv"); - Map fixedViolations = new HashMap<>(); - int quantityOfAllFixedViolations = readViolationsPerProject(violationTypes, fixedViolations, projects, "../FPM_Violations/RQ1/distinct-fixed-summary-per-project-vtype.csv"); - - // Ratio of each violation type in all violations. - Map ratioOfEachViolationType = new HashMap<>(); // ratio of each violation type - Map ratioOfEachFixedViolationType1 = new HashMap<>(); // quantity of each fixed violation type / quantity of each violation type. - Map ratioOfEachFixedViolationType2 = new HashMap<>(); // quantity of each fixed violation type / quantityOfAllFixedViolations - - for (Map.Entry entry : violations.entrySet()) { - String violationType = entry.getKey(); - int quantity = entry.getValue(); - double ratio = (double) quantity / quantityOfAllViolations; - ratioOfEachViolationType.put(violationType, ratio); - - if (fixedViolations.containsKey(violationType)) { - int quantity1 = fixedViolations.get(violationType); - double ratio1 = (double)quantity1 / quantity; - double ratio2 = (double)quantity1 / quantityOfAllFixedViolations; - ratioOfEachFixedViolationType1.put(violationType, ratio1); - ratioOfEachFixedViolationType2.put(violationType, ratio2); - } else { - ratioOfEachFixedViolationType1.put(violationType, 0d); - } - } - - tenFoldsOfAllViolationTypes.put(i, ratioOfEachViolationType); - tenFoldsOfAllFixedViolationTypes1.put(i, ratioOfEachFixedViolationType1); - tenFoldsOfAllFixedViolationTypes2.put(i, ratioOfEachFixedViolationType2); - - - // Testing Data - List testingProjects = readList(files.get(i)); - Map testingViolations = new HashMap<>(); - int testingQuantitifOfAllViolations = readViolationsPerProject(violationTypes, testingViolations, testingProjects, "../FPM_Violations/RQ1/all-leafnodes-per-project-vtype.csv"); - Map testingFixedViolations = new HashMap<>(); - int testingQuantityOfAllFixedViolations = readViolationsPerProject(violationTypes, testingFixedViolations, testingProjects, "../FPM_Violations/RQ1/distinct-fixed-summary-per-project-vtype.csv"); - - Map testingRatioOfEachViolationType = new HashMap<>(); - Map testingRatioOfEachFixedViolationType1 = new HashMap<>(); - Map testingRatioOfEachFixedViolationType2 = new HashMap<>(); - - for (Map.Entry entry : testingViolations.entrySet()) { - String violationType = entry.getKey(); - int quantity = entry.getValue(); - double ratio = (double) quantity / testingQuantitifOfAllViolations; - - testingRatioOfEachViolationType.put(violationType, ratio); - if (testingFixedViolations.containsKey(violationType)) { - int quantity1 = testingFixedViolations.get(violationType); - testingRatioOfEachFixedViolationType1.put(violationType, (double)quantity1 / quantity); - testingRatioOfEachFixedViolationType2.put(violationType, (double)quantity1 / testingQuantityOfAllFixedViolations); - } else { - testingRatioOfEachFixedViolationType1.put(violationType, 0d); - } - } - testingTenFoldsOfAllViolationTypes.put(i, testingRatioOfEachViolationType); - testingTenFoldsOfAllFixedViolationTypes1.put(i, testingRatioOfEachFixedViolationType1); - testingTenFoldsOfAllFixedViolationTypes2.put(i, testingRatioOfEachFixedViolationType2); - } - - outputTenFolds(tenFoldsOfAllViolationTypes, testingTenFoldsOfAllViolationTypes, violationTypes, "../FPM_Violations/RQ1/" + outputPath + "/Ten-fold-all-violation-type-" + topNumber + ".csv"); - outputTenFolds(tenFoldsOfAllFixedViolationTypes1, testingTenFoldsOfAllFixedViolationTypes1, violationTypes, "../FPM_Violations/RQ1/" + outputPath + "/Ten-fold-all-fixed-violation-type1-" + topNumber + ".csv"); - outputTenFolds(tenFoldsOfAllFixedViolationTypes2, testingTenFoldsOfAllFixedViolationTypes2, violationTypes, "../FPM_Violations/RQ1/" + outputPath + "/Ten-fold-all-fixed-violation-type2-" + topNumber + ".csv"); - } - - private static List readTypes(String fileName, int number) throws IOException { - List violationTypes = new ArrayList<>(); - String content = FileHelper.readFile(fileName); - BufferedReader reader = new BufferedReader(new StringReader(content)); - String line = reader.readLine(); - int counter = 0; - while ((line = reader.readLine()) != null) { - String[] elements = line.split(","); - violationTypes.add(elements[0]); - - if (++counter == number) break; - } - reader.close(); - return violationTypes; - } - - private static void outputTenFolds(Map> ratiosMap, Map> testingMap, List violationTypes, String fileName) { - StringBuilder builder = new StringBuilder("Violatype, 0, 0-R, 0-T, 0-T-R, 1, 1-R, 1-T, 1-T-R, 2, 2-R, 2-T, 2-T-R, 3, 3-R, 3-T, 3-T-R, 4, 4-R, 4-T, 4-T-R, 5, 5-R, 5-T, 5-T-R, 6, 6-R, 6-T, 6-T-R, 7, 7-R, 7-T, 7-T-R, 8, 8-R, 8-T, 8-T-R, 9, 9-R, 9-T, 9-T-R\n"); - - Map> ratiosRankingMap = new HashMap<>(); - Map> testingDataRankingMap = new HashMap<>(); - - for (String type : violationTypes) { - builder.append(type); - for (int i = 0; i < 10; i ++) { - Map ratios = ratiosMap.get(i); - Map testingData = testingMap.get(i); - - Map ratiosRanking; - Map testingDataRanking; - if (!ratiosRankingMap.containsKey(i)) { - ratiosRanking = rankAlarmTypes(ratios); - testingDataRanking = rankAlarmTypes(testingData); - } else { - ratiosRanking = ratiosRankingMap.get(i); - testingDataRanking = testingDataRankingMap.get(i); - } - - - if (ratios.containsKey(type)) { - builder.append(", " + ratios.get(type));//.toString().replace(".", ",") - } else { - builder.append(", 0.0"); - } - if (ratiosRanking.containsKey(type)) { - builder.append(", " + ratiosRanking.get(type)); - } else { - builder.append(", " + (ratiosRanking.size() + 1)); - } - if (testingData.containsKey(type)) { - builder.append(", " + testingData.get(type)); - } else { - builder.append(", 0.0"); - } - if (testingDataRanking.containsKey(type)) { - builder.append(", " + testingDataRanking.get(type)); - } else { - builder.append(", " + (testingDataRanking.size() + 1)); - } - } - builder.append("\n"); - } - FileHelper.outputToFile(fileName, builder, false); - } - - private static Map rankAlarmTypes(Map possibilityMap) { - MapSorter sorter = new MapSorter<>(); - possibilityMap = sorter.sortByValueDescending(possibilityMap); - Map ranking = new HashMap<>(); - int ranker = 0; - double possibility = 0; - for (Map.Entry entry : possibilityMap.entrySet()) { - String alarmType = entry.getKey(); - double value = entry.getValue(); - if (possibility != value) { - ranker = ranking.size() + 1; - } - ranking.put(alarmType, ranker); - } - return ranking; - } - - private static int readViolationsPerProject(List violationTypes, Map violations, List projects, String fileName) throws NumberFormatException, IOException { - int quantityOfAllViolations = 0; - - String content = FileHelper.readFile(fileName); - BufferedReader reader = new BufferedReader(new StringReader(content)); - String line = null; - while ((line = reader.readLine()) != null) { - String[] elements = line.split(","); - String projectName = elements[0]; - if (projects.contains(projectName)) { - String alarmType = elements[1]; - - if (violationTypes.contains(alarmType)) { - int quantity = Integer.parseInt(elements[2]); - - quantityOfAllViolations += quantity; - if (violations.containsKey(alarmType)) { - violations.put(alarmType, violations.get(alarmType) + quantity); - } else { - violations.put(alarmType, quantity); - } - } - - } - } - reader.close(); - return quantityOfAllViolations; - } - - private static List selectPorjects(List files, int i) { - List projects = new ArrayList<>(); - for (File file : files) { - if (file.getName().equals("Fold_" + i + ".list")) { - continue; - } - - projects.addAll(readList(file)); - } - return projects; - } - - private static List readList(File file) { - List projects = new ArrayList<>(); - - String content = FileHelper.readFile(file); - BufferedReader reader = new BufferedReader(new StringReader(content)); - String line = null; - try { - while ((line = reader.readLine()) != null) { - projects.add(line); - } - } catch (IOException e) { - e.printStackTrace(); - } finally { - try { - reader.close(); - } catch (IOException e) { - e.printStackTrace(); - } - } - - return projects; - } - -} diff --git a/src/main/java/edu/lu/uni/serval/statistics/TenFoldPossibilities3.java b/src/main/java/edu/lu/uni/serval/statistics/TenFoldPossibilities3.java deleted file mode 100644 index 3aabe88..0000000 --- a/src/main/java/edu/lu/uni/serval/statistics/TenFoldPossibilities3.java +++ /dev/null @@ -1,256 +0,0 @@ -package edu.lu.uni.serval.statistics; - -import java.io.BufferedReader; -import java.io.File; -import java.io.IOException; -import java.io.StringReader; -import java.util.ArrayList; -import java.util.HashMap; -import java.util.List; -import java.util.Map; - -import edu.lu.uni.serval.utils.FileHelper; -import edu.lu.uni.serval.utils.MapSorter; - -/** - * Fixed violation types are selected by their quantities. - * - * @author kui.liu - * - */ -public class TenFoldPossibilities3 { - - public static void main(String[] args) throws IOException { - rankingInTenFolds("../FPM_Violations/RQ1/TenFolds/", "../FPM_Violations/RQ1/Quantity-per-V-type.csv", "TenFolds-Q"); // ten folds of all projects. -// rankingInTenFolds("../FPM_Violations/RQ1/FixedTenFolds-Q/", "../FPM_Violations/RQ1/Quantity-per-FixedV-Type.csv", "FixedTenFolds-Q"); - } - - public static void rankingInTenFolds(String tenFoldFiles, String typeFile, String outputPath) throws NumberFormatException, IOException { - int topNumber = 70; - List violationTypes = readTypes(typeFile, topNumber); - - List files = FileHelper.getAllFilesInCurrentDiectory(tenFoldFiles, ".list"); - - Map> tenFoldsOfAllViolationTypes = new HashMap<>(); - Map> tenFoldsOfAllFixedViolationTypes1 = new HashMap<>(); - Map> tenFoldsOfAllFixedViolationTypes2 = new HashMap<>(); - Map> testingTenFoldsOfAllViolationTypes = new HashMap<>(); - Map> testingTenFoldsOfAllFixedViolationTypes1 = new HashMap<>(); - Map> testingTenFoldsOfAllFixedViolationTypes2 = new HashMap<>(); - for (int i = 0; i < 10; i ++) { - List projects = selectPorjects(files, i); - - // all violations in these 9 sub-sets. - Map violations = new HashMap<>(); - int quantityOfAllViolations = readViolationsPerProject(violationTypes, violations, projects, "../FPM_Violations/RQ1/all-leafnodes-per-project-vtype.csv"); - Map fixedViolations = new HashMap<>(); - int quantityOfAllFixedViolations = readViolationsPerProject(violationTypes, fixedViolations, projects, "../FPM_Violations/RQ1/distinct-fixed-summary-per-project-vtype.csv"); - - // Ratio of each violation type in all violations. - Map ratioOfEachViolationType = new HashMap<>(); // ratio of each violation type - Map ratioOfEachFixedViolationType1 = new HashMap<>(); // quantity of each fixed violation type / quantity of each violation type. - Map ratioOfEachFixedViolationType2 = new HashMap<>(); // quantity of each fixed violation type / quantityOfAllFixedViolations - - for (Map.Entry entry : violations.entrySet()) { - String violationType = entry.getKey(); - int quantity = entry.getValue(); - double ratio = (double) quantity / quantityOfAllViolations; - ratioOfEachViolationType.put(violationType, ratio); - - if (fixedViolations.containsKey(violationType)) { - int quantity1 = fixedViolations.get(violationType); - double ratio1 = (double)quantity1 / quantity; - double ratio2 = (double)quantity1 / quantityOfAllFixedViolations; - ratioOfEachFixedViolationType1.put(violationType, ratio1); - ratioOfEachFixedViolationType2.put(violationType, ratio2); - } else { - ratioOfEachFixedViolationType1.put(violationType, 0d); - } - } - - tenFoldsOfAllViolationTypes.put(i, ratioOfEachViolationType); - tenFoldsOfAllFixedViolationTypes1.put(i, ratioOfEachFixedViolationType1); - tenFoldsOfAllFixedViolationTypes2.put(i, ratioOfEachFixedViolationType2); - - - // Testing Data - List testingProjects = readList(files.get(i)); - Map testingViolations = new HashMap<>(); - int testingQuantitifOfAllViolations = readViolationsPerProject(violationTypes, testingViolations, testingProjects, "../FPM_Violations/RQ1/all-leafnodes-per-project-vtype.csv"); - Map testingFixedViolations = new HashMap<>(); - int testingQuantityOfAllFixedViolations = readViolationsPerProject(violationTypes, testingFixedViolations, testingProjects, "../FPM_Violations/RQ1/distinct-fixed-summary-per-project-vtype.csv"); - - Map testingRatioOfEachViolationType = new HashMap<>(); - Map testingRatioOfEachFixedViolationType1 = new HashMap<>(); - Map testingRatioOfEachFixedViolationType2 = new HashMap<>(); - - for (Map.Entry entry : testingViolations.entrySet()) { - String violationType = entry.getKey(); - int quantity = entry.getValue(); - double ratio = (double) quantity / testingQuantitifOfAllViolations; - - testingRatioOfEachViolationType.put(violationType, ratio); - if (testingFixedViolations.containsKey(violationType)) { - int quantity1 = testingFixedViolations.get(violationType); - testingRatioOfEachFixedViolationType1.put(violationType, (double)quantity1 / quantity); - testingRatioOfEachFixedViolationType2.put(violationType, (double)quantity1 / testingQuantityOfAllFixedViolations); - } else { - testingRatioOfEachFixedViolationType1.put(violationType, 0d); - } - } - testingTenFoldsOfAllViolationTypes.put(i, testingRatioOfEachViolationType); - testingTenFoldsOfAllFixedViolationTypes1.put(i, testingRatioOfEachFixedViolationType1); - testingTenFoldsOfAllFixedViolationTypes2.put(i, testingRatioOfEachFixedViolationType2); - } - - outputTenFolds(tenFoldsOfAllViolationTypes, testingTenFoldsOfAllViolationTypes, violationTypes, "../FPM_Violations/RQ1/" + outputPath + "/Ten-fold-all-violation-type" + topNumber + ".csv"); - outputTenFolds(tenFoldsOfAllFixedViolationTypes1, testingTenFoldsOfAllFixedViolationTypes1, violationTypes, "../FPM_Violations/RQ1/" + outputPath + "/Ten-fold-all-fixed-violation-type1-" + topNumber + ".csv"); - outputTenFolds(tenFoldsOfAllFixedViolationTypes2, testingTenFoldsOfAllFixedViolationTypes2, violationTypes, "../FPM_Violations/RQ1/" + outputPath + "/Ten-fold-all-fixed-violation-type2-" + topNumber + ".csv"); - } - - private static List readTypes(String fileName, int number) throws IOException { - List violationTypes = new ArrayList<>(); - String content = FileHelper.readFile(fileName); - BufferedReader reader = new BufferedReader(new StringReader(content)); - String line = reader.readLine(); - int counter = 0; - while ((line = reader.readLine()) != null) { - String[] elements = line.split(","); - violationTypes.add(elements[0]); - - if(++ counter == number) break; - } - reader.close(); - return violationTypes; - } - - private static void outputTenFolds(Map> ratiosMap, Map> testingMap, List violationTypes, String fileName) { - StringBuilder builder = new StringBuilder("Violatype, 0, 0-R, 0-T, 0-T-R, 1, 1-R, 1-T, 1-T-R, 2, 2-R, 2-T, 2-T-R, 3, 3-R, 3-T, 3-T-R, 4, 4-R, 4-T, 4-T-R, 5, 5-R, 5-T, 5-T-R, 6, 6-R, 6-T, 6-T-R, 7, 7-R, 7-T, 7-T-R, 8, 8-R, 8-T, 8-T-R, 9, 9-R, 9-T, 9-T-R\n"); - - Map> ratiosRankingMap = new HashMap<>(); - Map> testingDataRankingMap = new HashMap<>(); - - for (String type : violationTypes) { - builder.append(type); - for (int i = 0; i < 10; i ++) { - Map ratios = ratiosMap.get(i); - Map testingData = testingMap.get(i); - - Map ratiosRanking; - Map testingDataRanking; - if (!ratiosRankingMap.containsKey(i)) { - ratiosRanking = rankAlarmTypes(ratios); - testingDataRanking = rankAlarmTypes(testingData); - } else { - ratiosRanking = ratiosRankingMap.get(i); - testingDataRanking = testingDataRankingMap.get(i); - } - - - if (ratios.containsKey(type)) { - builder.append(", " + ratios.get(type));//.toString().replace(".", ",") - } else { - builder.append(", 0.0"); - } - if (ratiosRanking.containsKey(type)) { - builder.append(", " + ratiosRanking.get(type)); - } else { - builder.append(", " + (ratiosRanking.size() + 1)); - } - if (testingData.containsKey(type)) { - builder.append(", " + testingData.get(type)); - } else { - builder.append(", 0.0"); - } - if (testingDataRanking.containsKey(type)) { - builder.append(", " + testingDataRanking.get(type)); - } else { - builder.append(", " + (testingDataRanking.size() + 1)); - } - } - builder.append("\n"); - } - FileHelper.outputToFile(fileName, builder, false); - } - - private static Map rankAlarmTypes(Map possibilityMap) { - MapSorter sorter = new MapSorter<>(); - possibilityMap = sorter.sortByValueDescending(possibilityMap); - Map ranking = new HashMap<>(); - int ranker = 0; - double possibility = 0; - for (Map.Entry entry : possibilityMap.entrySet()) { - String alarmType = entry.getKey(); - double value = entry.getValue(); - if (possibility != value) { - ranker = ranking.size() + 1; - } - ranking.put(alarmType, ranker); - } - return ranking; - } - - private static int readViolationsPerProject(List violationTypes, Map violations, List projects, String fileName) throws NumberFormatException, IOException { - int quantityOfAllViolations = 0; - - String content = FileHelper.readFile(fileName); - BufferedReader reader = new BufferedReader(new StringReader(content)); - String line = null; - while ((line = reader.readLine()) != null) { - String[] elements = line.split(","); - String projectName = elements[0]; - if (projects.contains(projectName)) { - String alarmType = elements[1]; - if (violationTypes.contains(alarmType)) { - int quantity = Integer.parseInt(elements[2]); - - quantityOfAllViolations += quantity; - if (violations.containsKey(alarmType)) { - violations.put(alarmType, violations.get(alarmType) + quantity); - } else { - violations.put(alarmType, quantity); - } - } - - } - } - reader.close(); - return quantityOfAllViolations; - } - - private static List selectPorjects(List files, int i) { - List projects = new ArrayList<>(); - for (File file : files) { - if (file.getName().equals("Fold_" + i + ".list")) { - continue; - } - - projects.addAll(readList(file)); - } - return projects; - } - - private static List readList(File file) { - List projects = new ArrayList<>(); - - String content = FileHelper.readFile(file); - BufferedReader reader = new BufferedReader(new StringReader(content)); - String line = null; - try { - while ((line = reader.readLine()) != null) { - projects.add(line); - } - } catch (IOException e) { - e.printStackTrace(); - } finally { - try { - reader.close(); - } catch (IOException e) { - e.printStackTrace(); - } - } - - return projects; - } - -} diff --git a/src/main/java/edu/lu/uni/serval/statistics/TenFoldProjs.java b/src/main/java/edu/lu/uni/serval/statistics/TenFoldProjs.java deleted file mode 100644 index f697a47..0000000 --- a/src/main/java/edu/lu/uni/serval/statistics/TenFoldProjs.java +++ /dev/null @@ -1,121 +0,0 @@ -package edu.lu.uni.serval.statistics; - -import java.io.BufferedReader; -import java.io.IOException; -import java.io.StringReader; -import java.util.ArrayList; -import java.util.HashMap; -import java.util.List; -import java.util.Map; -import java.util.Random; - -import edu.lu.uni.serval.utils.FileHelper; - -public class TenFoldProjs { - - public static void main(String[] args) { - List allProjects = readList("../FPM_Violations/RQ1/Quantity-per-Proj.csv"); - randomSeparateProjects(allProjects, "../FPM_Violations/RQ1/TenFolds/"); - List allFixedProjects = readList("../FPM_Violations/RQ1/Quantity-per-FixedProj.csv"); - randomSeparateProjects(allFixedProjects, "../FPM_Violations/RQ1/FixedTenFolds-1/"); - - List selectedProjects = selectFixedProjects("../FPM_Violations/RQ1/Quantity-per-FixedProj.csv"); - randomSeparateProjects(selectedProjects, "../FPM_Violations/RQ1/FixedTenFolds-2/"); - } - - private static void randomSeparateProjects(List projectNames, String outputPath) { - List selectedIndexes = new ArrayList<>(); - - int number = projectNames.size(); - int number2 = (int) Math.round((double) number / 10); - - - Map> map = new HashMap<>(); - - for (int i = 0; i < 9; i ++) { - int counter = 0; - List value = new ArrayList<>(); - - while (counter < number2) { - Random random = new Random(); - int index = random.nextInt(number); - if (!selectedIndexes.contains(index)) { - counter ++; - value.add(projectNames.get(index)); - selectedIndexes.add(index); - - if (selectedIndexes.size() == number) break; - } - } - - map.put(i, value); - } - - List value = new ArrayList<>(); - for (int i = 0; i < number; i ++) { - if (!selectedIndexes.contains(i)) { - value.add(projectNames.get(i)); - } - } - map.put(9, value); - - for (Map.Entry> entry : map.entrySet()) { - int key = entry.getKey(); - List projects = entry.getValue(); - System.out.println(projects.size()); - String pojectsStr = ""; - for (String project : projects) { - pojectsStr += project + "\n"; - } - FileHelper.outputToFile(outputPath + "Fold_" + key + ".list", pojectsStr, false); - } - } - - private static List selectFixedProjects(String fileName) { - List list = new ArrayList<>(); - String fileContent = FileHelper.readFile(fileName); - BufferedReader reader = new BufferedReader(new StringReader(fileContent)); - String line= null; - try { - line = reader.readLine(); - while ((line = reader.readLine()) != null) { - String[] elements = line.split(","); - list.add(elements[0]); - } - } catch (IOException e) { - e.printStackTrace(); - } finally { - try { - reader.close(); - } catch (IOException e) { - e.printStackTrace(); - } - } - - return list; - } - - private static List readList(String fileName) { - List list = new ArrayList<>(); - String fileContent = FileHelper.readFile(fileName); - BufferedReader reader = new BufferedReader(new StringReader(fileContent)); - String line= null; - try { - line = reader.readLine(); - while ((line = reader.readLine()) != null) { - list.add(line.split(",")[0]);; - } - } catch (IOException e) { - e.printStackTrace(); - } finally { - try { - reader.close(); - } catch (IOException e) { - e.printStackTrace(); - } - } - - return list; - } - -} diff --git a/src/main/java/edu/lu/uni/serval/statistics/UnhappenedTypesLiveStudy.java b/src/main/java/edu/lu/uni/serval/statistics/UnhappenedTypesLiveStudy.java deleted file mode 100644 index 12ea075..0000000 --- a/src/main/java/edu/lu/uni/serval/statistics/UnhappenedTypesLiveStudy.java +++ /dev/null @@ -1,73 +0,0 @@ -package edu.lu.uni.serval.statistics; - -import java.io.BufferedReader; -import java.io.File; -import java.io.IOException; -import java.io.StringReader; -import java.util.ArrayList; -import java.util.HashMap; -import java.util.List; -import java.util.Map; - -import edu.lu.uni.serval.config.Configuration; -import edu.lu.uni.serval.utils.FileHelper; -import edu.lu.uni.serval.utils.MapSorter; - -public class UnhappenedTypesLiveStudy { - - public static void main(String[] args) throws IOException { - List top50Types = readTypes(); - String path = Configuration.ROOT_PATH + "RQ3_3/LiveStudy/BugsInfo/"; - File[] projects = new File(path).listFiles(); - Map map = new HashMap<>(); - int i = 0; - for (File project : projects) { - if (project.isDirectory()) { - File[] types = project.listFiles(); - List top50TypesCopy = new ArrayList<>(); - top50TypesCopy.addAll(top50Types); - for (File type :types) { - if (type.isDirectory()) { - String typeStr = type.getName(); - top50TypesCopy.remove(typeStr); - } - } - - System.out.println(project.getName() + "::"); - for (String type : top50TypesCopy) { - System.out.println(type); - if (map.containsKey(type)) { - map.put(type, map.get(type) + 1); - } else { - map.put(type, 1); - } - } - i ++; - if (i == 10) break; - } - } - - MapSorter sorter = new MapSorter<>(); - map = sorter.sortByValueDescending(map); - for (Map.Entry entry : map.entrySet()) { - System.out.println(entry.getKey() + "==" + entry.getValue()); - } - } - - private static List readTypes() throws IOException { - List types = new ArrayList<>(); - String content = FileHelper.readFile(Configuration.ROOT_PATH + "RQ1/Quantity-per-Fixed_1.0V-Type.csv"); - BufferedReader reader = new BufferedReader(new StringReader(content)); - String line = null; - int i = 0; - while ((line = reader.readLine()) != null) { - String type = line.substring(0, line.indexOf(",")); - types.add(type); - i ++; - if (i == 51) break; - } - - return types; - } - -} diff --git a/src/main/java/edu/lu/uni/serval/statistics/UnparsedFiles.java b/src/main/java/edu/lu/uni/serval/statistics/UnparsedFiles.java deleted file mode 100644 index a139fb0..0000000 --- a/src/main/java/edu/lu/uni/serval/statistics/UnparsedFiles.java +++ /dev/null @@ -1,55 +0,0 @@ -package edu.lu.uni.serval.statistics; - -import java.io.FileInputStream; -import java.io.IOException; -import java.util.ArrayList; -import java.util.List; -import java.util.Scanner; - -import edu.lu.uni.serval.FixPatternParser.violations.Violation; -import edu.lu.uni.serval.utils.FileHelper; - -public class UnparsedFiles { - - public static void main(String[] args) throws IOException { - FileInputStream fis = new FileInputStream("../FPM_Violations/OAR.FPM.4221129.stderr"); - Scanner scanner = new Scanner(fis); - List vList = new ArrayList<>(); - String test1 = ""; - String test2 = ""; - String test3 = ""; - int i = 0; - while (scanner.hasNextLine()) { - String line = scanner.nextLine(); - String[] elements = line.split(":"); - Violation v = new Violation(Integer.parseInt(elements[2]), Integer.parseInt(elements[3]), elements[4]); - v.setFileName(elements[1]); - if (vList.contains(v)) { - i ++; -// System.out.println(elements[0]); - } else { - vList.add(v); - } - if (line.startsWith("#TestViolation:")) { -// System.out.println(line); - if (elements[1].toLowerCase().contains("/test/")) { - test1 += elements[1] + "\n"; - } else if (elements[1].toLowerCase().contains("tests/")) { - test2 += elements[1] + "\n"; - } else { - test3 += elements[1] + "\n"; - } - } - } - - scanner.close(); - fis.close(); - - System.out.println(vList.size()); - System.out.println(i); - FileHelper.outputToFile("logs/test1.txt", test1, false); - FileHelper.outputToFile("logs/test2.txt", test2, false); - FileHelper.outputToFile("logs/test3.txt", test3, false); - } - -} diff --git a/src/main/java/edu/lu/uni/serval/violation/Alarm.java b/src/main/java/edu/lu/uni/serval/violation/Alarm.java deleted file mode 100644 index e566658..0000000 --- a/src/main/java/edu/lu/uni/serval/violation/Alarm.java +++ /dev/null @@ -1,82 +0,0 @@ -package edu.lu.uni.serval.violation; - -import java.util.List; -import java.util.Map; - -public class Alarm { - - private String buggyCommitId; - private String buggyFileName; - private String fixedCommitId; - private String fixedFileName; - @Deprecated - private Map alarmTypes; - @Deprecated - private Map positions; - private List alarmTypesAndPositions; - - public Alarm(String buggyCommitId, String buggyFileName, String fixedCommitId, String fixedFileName) { - super(); - this.buggyCommitId = buggyCommitId; - this.buggyFileName = buggyFileName; - this.fixedCommitId = fixedCommitId; - this.fixedFileName = fixedFileName; - } - - public String getBuggyCommitId() { - return buggyCommitId; - } - - public String getBuggyFileName() { - return buggyFileName; - } - - public String getFixedCommitId() { - return fixedCommitId; - } - - public String getFixedFileName() { - return fixedFileName; - } - - @Deprecated - public Map getAlarmTypes() { - return alarmTypes; - } - - @Deprecated - public void setAlarmTypes(Map alarmTypes) { - this.alarmTypes = alarmTypes; - } - - @Deprecated - public Map getPositions() { - return positions; - } - - @Deprecated - public void setPositions(Map positions) { - this.positions = positions; - } - - public List getAlarmTypesAndPositions() { - return alarmTypesAndPositions; - } - - public void setAlarmTypesAndPositions(List alarmTypesAndPositions) { - this.alarmTypesAndPositions = alarmTypesAndPositions; - } - - @Override - public boolean equals(Object obj) { - if (obj instanceof Alarm) { - Alarm alarm = (Alarm) obj; - if (alarm.buggyCommitId.equals(this.buggyCommitId) && alarm.buggyFileName.equals(this.buggyFileName) - && alarm.fixedCommitId.equals(this.fixedCommitId) && alarm.fixedFileName.equals(this.fixedFileName)) { - return true; - } - } - return false; - } - -} diff --git a/src/main/java/edu/lu/uni/serval/violation/Violation.java b/src/main/java/edu/lu/uni/serval/violation/Violation.java deleted file mode 100644 index 27fb771..0000000 --- a/src/main/java/edu/lu/uni/serval/violation/Violation.java +++ /dev/null @@ -1,31 +0,0 @@ -package edu.lu.uni.serval.violation; - -import java.util.ArrayList; -import java.util.List; - -/** - * Violation: all alarms identified by FindBugs in one java project. - * - * @author kui.liu - * - */ -public class Violation { - - private String project; - private List alarms; - - public Violation(String project) { - this.project = project; - this.alarms = new ArrayList<>(); - } - - public String getProject() { - return project; - } - - public List getAlarms() { - return alarms; - } - - -} diff --git a/src/main/java/edu/lu/uni/serval/violation/code/parser/Test.java b/src/main/java/edu/lu/uni/serval/violation/code/parser/Test.java deleted file mode 100644 index e848b11..0000000 --- a/src/main/java/edu/lu/uni/serval/violation/code/parser/Test.java +++ /dev/null @@ -1,223 +0,0 @@ -package edu.lu.uni.serval.violation.code.parser; - -import java.io.BufferedReader; -import java.io.File; -import java.io.FileInputStream; -import java.io.IOException; -import java.io.StringReader; -import java.util.ArrayList; -import java.util.HashMap; -import java.util.List; -import java.util.Map; -import java.util.Scanner; - -import edu.lu.uni.serval.config.Configuration; -import edu.lu.uni.serval.diffentry.DiffEntryHunk; -import edu.lu.uni.serval.diffentry.DiffEntryReader; -import edu.lu.uni.serval.utils.FileHelper; -import edu.lu.uni.serval.utils.ListSorter; - -public class Test { - - public static void main(String[] args) throws IOException { -// testV1(); -// testV2(); -// testV3("../FPM_Violations/OAR.FPM.4225346.stderr", "OUTPUT/unparsedviolations.txt"); -// testV4("../FPM_Violations/OAR.FPM.4222208.stderr"); - } - - public static void testV4(String inputFile) throws IOException { - FileInputStream fis = new FileInputStream(inputFile); - Scanner scanner = new Scanner(fis); - StringBuilder builder = new StringBuilder(); - -// boolean isDiff = false; - - while (scanner.hasNextLine()) { - String line = scanner.nextLine(); - if (line.startsWith("## OAR")) break; -// if (line.startsWith("#NullDiffEntry")) { -// isDiff = true; -// continue; -// } else if (line.startsWith("#")) { -// isDiff = false; -// continue; -// } -// if (!isDiff) continue; - - String[] elements = line.trim().split(":"); - String type = elements[0]; - - - if (type.equals("#NullDiffEntry")) { - List diffentryHunks = new DiffEntryReader().readHunks2(new File("/Users/kui.liu/Public/git/FPM_Violations/GumTreeInput/diffentries/" + elements[1].replace(".java", ".txt").trim())); - int startLine = Integer.parseInt(elements[2].trim()); - int endLine = Integer.parseInt(elements[3].trim()); - for (DiffEntryHunk hunk : diffentryHunks) { - int hunkStart = hunk.getBugLineStartNum(); - int hunkEnd = hunk.getBugRange() + hunkStart - 1; - - if (startLine <= hunkEnd && hunkStart <= endLine) { - builder.append("vi " + elements[1].replace(".java", ".txt") + "\n : " + elements[2] + " : " + elements[3] + " : " + elements[4] + "\n"); - } - } - } -// List diffentryHunks = new DiffEntryReader().readHunks2(new File("/Users/kui.liu/Public/git/FPM_Violations/GumTreeInput/diffentries/" + elements[0].replace(".java", ".txt").trim())); -// int startLine = Integer.parseInt(elements[1].trim()); -// int endLine = Integer.parseInt(elements[2].trim()); -// for (DiffEntryHunk hunk : diffentryHunks) { -// int hunkStart = hunk.getBugLineStartNum(); -// int hunkEnd = hunk.getBugRange() + hunkStart - 1; -// -// if (startLine <= hunkEnd && hunkStart <= endLine) { -// builder.append("vi " + elements[0].replace(".java", ".txt") + "\n : " + elements[1] + " : " + elements[2] + "\n"); //+ " : " + elements[4] -// } -// } - } - scanner.close(); - fis.close(); - - FileHelper.outputToFile("Dataset/a.txt", builder, false); - } - - public static void testV3(String inputFile, String outputFile) throws IOException { - FileInputStream fis = new FileInputStream(inputFile); - Scanner scanner = new Scanner(fis); - - Map> types = new HashMap<>(); - while (scanner.hasNextLine()) { - String line = scanner.nextLine(); - if (line.startsWith("## OAR")) break; - String[] elements = line.split(":"); - String type = elements[0]; - - if (types.containsKey(type)) { - String info = elements[1] + " : " + elements[2] + " : " + elements[3] + " : " + elements[4]; - if (!types.get(type).contains(info)) { - types.get(type).add(info); - } - } else { - List files = new ArrayList<>(); - files.add(elements[1] + " : " + elements[2] + " : " + elements[3] + " : " + elements[4]); - types.put(type, files); - } - } - scanner.close(); - fis.close(); - - StringBuilder builder = new StringBuilder(); - for (Map.Entry> entry : types.entrySet()) { - System.out.println(entry.getKey()); - if (entry.getKey().equals("#NoStatementChange")) { - // --- /dev/null - builder.append(entry.getKey() + "\n"); - List files = entry.getValue(); - for (String file : files) { - builder.append(" " + file + "\n"); - String fileName = Configuration.GUM_TREE_INPUT + "diffentries/" + file.substring(0, file.indexOf(".java")) + ".txt"; - String content = FileHelper.readFile(fileName); - if (!content.contains("--- /dev/null")) { - System.out.println(file.substring(0, file.indexOf(".java")) + ".txt"); - } - } - } - } - FileHelper.outputToFile(outputFile, builder, false); - } - - public static void testV2() throws IOException { - String content = FileHelper.readFile("logs/testV2.txt"); - BufferedReader reader = new BufferedReader(new StringReader(content)); - String line = null; - Map> types = new HashMap<>(); - while ((line = reader.readLine()) != null) { - String[] elements = line.split(" : "); - String type = elements[0]; - - if (types.containsKey(type)) { - types.get(type).add(elements[1] + " : " + elements[2] + " : " + elements[3]); - } else { - List files = new ArrayList<>(); - files.add(elements[1] + " : " + elements[2] + " : " + elements[3]); - types.put(type, files); - } - } - reader.close(); - - StringBuilder builder = new StringBuilder(); - for (Map.Entry> entry : types.entrySet()) { - System.out.println(entry.getKey()); - builder.append(entry.getKey() + "\n"); - List files = entry.getValue(); - for (String file : files) { - builder.append(file + "\n"); - } - } - FileHelper.outputToFile("logs/MultiV.txt", builder, false); - } - - public static void testV1() throws IOException { - Map>> map = new HashMap<>(); - String content = FileHelper.readFile("OUTPUT/list-1.txt"); - BufferedReader reader = new BufferedReader(new StringReader(content)); - String line = null; - List types1 = new ArrayList<>(); - List types2 = new ArrayList<>(); - while ((line = reader.readLine()) != null) { - String[] elements = line.split(":"); - String type = elements[0]; - String startLine = elements[2]; - if (!"-1".equals(startLine)) { - startLine = "1"; - if (!types1.contains(type)) { - types1.add(type); - } - } else { - if (!types2.contains(type)) { - types2.add(type); - } - } - if (map.containsKey(startLine)) { - Map> types = map.get(startLine); - if (types.containsKey(type)) { - List files = types.get(type); - files.add(elements[1] + "\n" + elements[2] + " : " + elements[3]); - } else { - List files = new ArrayList<>(); - files.add(elements[1] + "\n" + elements[2] + " : " + elements[3]); - types.put(type, files); - } - } else { - Map> types = new HashMap<>(); - List files = new ArrayList<>(); - files.add(elements[1] + "\n" + elements[2] + " : " + elements[3]); - types.put(type, files); - map.put(startLine, types); - } - } - reader.close(); - - StringBuilder builder = new StringBuilder(); - for (Map.Entry>> entry : map.entrySet()) { - builder.append(entry.getKey() + "\n"); - List tList = null; - if (entry.getKey().equals("1")) { - tList = types1; - } else { - tList = types2; - } - ListSorter sorter = new ListSorter(tList); - tList = sorter.sortAscending(); - Map> types = entry.getValue(); - for (String type : tList) { - builder.append(" " + type + "\n"); - List files = types.get(type); - for (String file : files) { - builder.append(file + "\n"); - } - } - } - FileHelper.outputToFile("OUTPUT/NullV.txt", builder, false); - } - -} diff --git a/src/main/java/edu/lu/uni/serval/violation/code/parser/ViolatePositionReader.java b/src/main/java/edu/lu/uni/serval/violation/code/parser/ViolatePositionReader.java deleted file mode 100644 index 68bacd7..0000000 --- a/src/main/java/edu/lu/uni/serval/violation/code/parser/ViolatePositionReader.java +++ /dev/null @@ -1,138 +0,0 @@ -package edu.lu.uni.serval.violation.code.parser; - -import java.io.BufferedReader; -import java.io.File; -import java.io.IOException; -import java.io.StringReader; -import java.util.ArrayList; -import java.util.HashMap; -import java.util.List; -import java.util.Map; - -import edu.lu.uni.serval.MultipleThreadsParser.MessageFile; -import edu.lu.uni.serval.config.Configuration; -import edu.lu.uni.serval.utils.FileHelper; - -/** - * Read violations' positions. - * - * Class name part, - * Field declaration, - * Initializer, - * Method name, - * Method body, - * Inner class, - * Anonymous class. - * - * @author kui.liu - * - */ -public class ViolatePositionReader { - /* - -0 : 1280 --1 : 15 -1 : 505 AnonymousClassDeclaration -23 : 7108 FieldDeclaration -71 : 310 EnumDeclaration -55 : 640 TypeDeclaration -72 : 87 EnumConstantDeclaration -28 : 1022 Initializer -31 : 77960 MethodDeclaration - - */ - public static void main(String[] args) throws NumberFormatException, IOException { - List msgFiles = getMessageFiles(Configuration.GUM_TREE_INPUT); - - Map map1 = new HashMap<>(); - Map> map2 = new HashMap<>(); - - StringBuilder zeorBuilder = new StringBuilder(); - StringBuilder minusOneBuilder = new StringBuilder(); - for (MessageFile file : msgFiles) { - -// if (!file.getPrevFile().getName().equals( -//"prev_ovgu-ccd-jchess_c3f4a0_bdca7bjchess#util#PixelCoordinateNotOnBoardException.java")) continue; - - String fileContent = FileHelper.readFile(file.getPositionFile()); - BufferedReader reader = null; - reader = new BufferedReader(new StringReader(fileContent)); - String line = null; - - while ((line = reader.readLine()) != null) { - String[] positionStr = line.split(":"); - int startLine = Integer.parseInt(positionStr[1]); - int endLine = Integer.parseInt(positionStr[2]); - String violationType = positionStr[0]; - - int range; - if (startLine != -1) { - ViolationSourceCodeTree alarmTree = new ViolationSourceCodeTree(file.getPrevFile(), startLine, endLine); - alarmTree.locateParentNode(); - range = alarmTree.getViolationFinalStartLine(); - } else { - range = 0; - } - - if (map1.containsKey(range)) { - map1.put(range, map1.get(range) + 1); - } else { - map1.put(range, 1); - } - - if (map2.containsKey(violationType)) { - Map map = map2.get(violationType); - if (map.containsKey(range)) { - map.put(range, map.get(range) + 1); - } else { - map.put(range, 1); - } - } else { - Map map = new HashMap<>(); - map.put(range, 1); - map2.put(violationType, map); - } - - if (range == 0) { - zeorBuilder.append(line + ":" + file.getPrevFile().getName() + "\n"); - } else if (range == -1) { - minusOneBuilder.append(line + ":" + file.getPrevFile().getName() + "\n"); - } - } - - reader.close(); - } - for (Map.Entry entry : map1.entrySet()) { - System.out.println(entry.getKey() + " : " + entry.getValue()); - } - FileHelper.outputToFile("Dataset/0.list", zeorBuilder, false); - FileHelper.outputToFile("Dataset/1.list", minusOneBuilder, false); - } - - /** - * Get violation-related files. - * - * @param gumTreeInput - * @return - */ - public static List getMessageFiles(String gumTreeInput) { - String inputPath = gumTreeInput; // prevFiles revFiles diffentryFile positionsFile - File revFilesPath = new File(inputPath + "revFiles/"); - File[] revFiles = revFilesPath.listFiles(); // project folders - List msgFiles = new ArrayList<>(); - - for (File revFile : revFiles) { - if (revFile.getName().endsWith(".java")) { - String fileName = revFile.getName(); - File prevFile = new File(gumTreeInput + "prevFiles/prev_" + fileName);// previous file - fileName = fileName.replace(".java", ".txt"); - File positionFile = new File(gumTreeInput + "positions/" + fileName); // position file - MessageFile msgFile = new MessageFile(null, prevFile, null); - msgFile.setPositionFile(positionFile); - msgFiles.add(msgFile); - } - } - - return msgFiles; - } -} diff --git a/src/main/java/edu/lu/uni/serval/violation/code/parser/ViolationCodeParser.java b/src/main/java/edu/lu/uni/serval/violation/code/parser/ViolationCodeParser.java deleted file mode 100644 index 5f01175..0000000 --- a/src/main/java/edu/lu/uni/serval/violation/code/parser/ViolationCodeParser.java +++ /dev/null @@ -1,282 +0,0 @@ -package edu.lu.uni.serval.violation.code.parser; - -import java.io.BufferedReader; -import java.io.File; -import java.io.FileInputStream; -import java.io.FileNotFoundException; -import java.io.IOException; -import java.io.StringReader; -import java.util.ArrayList; -import java.util.List; -import java.util.Scanner; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -import com.github.gumtreediff.tree.ITree; - -import edu.lu.uni.serval.FixPatternParser.Tokenizer; -import edu.lu.uni.serval.FixPatternParser.violations.Violation; -import edu.lu.uni.serval.config.Configuration; -import edu.lu.uni.serval.gumtree.regroup.SimpleTree; -import edu.lu.uni.serval.gumtree.regroup.SimplifyTree; -import edu.lu.uni.serval.utils.FileHelper; - -public class ViolationCodeParser { - - private static Logger log = LoggerFactory.getLogger(ViolationCodeParser.class); - - public static void main(String[] args) { - /* - * Fixed violations: - * Violation code files. - * Position files. - */ -// String fixedViolationFilesPath = Configuration.GUM_TREE_INPUT + "prevFiles/"; -// String positionsFilePath = Configuration.GUM_TREE_INPUT + "positions/"; -// int subIndex = 5; -// String outputPath = Configuration.ROOT_PATH + "Alarms_tokens/fixedAlarms.list"; -// FileHelper.deleteFile(outputPath); -// new ViolationCodeParser().parse(fixedViolationFilesPath, positionsFilePath, subIndex, outputPath); - - /* - * UnFixed violations: - * Violation code files. - * Position files. - */ - String unfixedViolationFilesPath = Configuration.GUM_TREE_INPUT + "unfixAlarms/"; - String un_positionsFilePath = Configuration.GUM_TREE_INPUT + "un_positions/"; - int subIndex2 = 8; - String outputPath2 = Configuration.ROOT_PATH + "Alarms_tokens/unfixedAlarms.list"; - FileHelper.deleteFile(outputPath2); - new ViolationCodeParser().parse(unfixedViolationFilesPath, un_positionsFilePath, subIndex2, outputPath2); - } - - public void parse(String alarmFilesPath, String positionFilesPath, int subIndex, String outputPath) { - StringBuilder tokensBuilder = new StringBuilder(); - List javaFiles = FileHelper.getAllFilesInCurrentDiectory(alarmFilesPath, ".java"); - int counter = 0; - int a = 0; - int maxLength = 0; - for (File javaFile : javaFiles) { - String fileName = javaFile.getName().replace(".java", ".txt"); - fileName = fileName.substring(subIndex); - - List violations = readViolationInfo(positionFilesPath + fileName); - - for (Violation violation : violations) { - int startLine = violation.getStartLineNum(); - int endLine = violation.getEndLineNum(); - String alarmType = violation.getViolationType(); - -// if (endLine > startLine + 5) { -// log.warn("#Large_Violation_Hunk: " + fileName.replace("#", "/").replace(".txt", ".java") + ":" + startLine + ":" + endLine + ":" + alarmType); -// continue; -// } - - ViolationSourceCodeTree alarmTree = new ViolationSourceCodeTree(javaFile, startLine, endLine); - alarmTree.extract(); - List matchedTrees = alarmTree.getViolationSourceCodeTrees(); - if (matchedTrees.size() == 0) { - System.out.println(fileName + " == " + startLine + " : " + endLine); - a ++; - log.warn("#Null_Violation_Hunk: " + fileName.replace("#", "/").replace(".txt", ".java") + ":" + startLine + ":" + endLine + ":" + alarmType); - continue; - } - SimpleTree simpleTree = new SimpleTree(); - simpleTree.setLabel("Block"); - simpleTree.setNodeType("Block"); - List children = new ArrayList<>(); - - for (ITree matchedTree : matchedTrees) { - SimpleTree simpleT = new SimplifyTree().canonicalizeSourceCodeTree(matchedTree, null); - children.add(simpleT); - } - simpleTree.setChildren(children); - - String tokens = Tokenizer.getTokensDeepFirst(simpleTree); - String[] tokensArray = tokens.split(" "); - int length = tokensArray.length; - if (length > maxLength) maxLength = length; - tokensBuilder.append(alarmType + ":" + fileName + ":" + alarmTree.getViolationFinalStartLine() + ":" + alarmTree.getViolationFinalEndLine() + ":" + tokens + "\n"); - counter ++; - if (counter % 5000 == 0) { - FileHelper.outputToFile(outputPath, tokensBuilder, true); - tokensBuilder.setLength(0); - } - } - } - - System.out.println(counter); - System.out.println(a); - System.out.println("MaxLength: " + maxLength); - FileHelper.outputToFile(outputPath, tokensBuilder, true); - tokensBuilder.setLength(0); - } - - public String sourceCode = ""; - public String tokens = ""; - public String sizes = ""; - - public void parse(File javaFile, File positionFile) { - - List violations = readViolationInfo(positionFile); - for (Violation violation : violations) { - int startLine = violation.getStartLineNum(); - int endLine = violation.getEndLineNum(); - - String type = violation.getViolationType(); - -// if (violationTypes != null && violationTypes.contains(type)) { -//// if (endLine > startLine + 5) { -////// log.warn("#Large_Violation_Hunk: " + javaFile.getName() + ":" + startLine + ":" + endLine + ":" + alarmType); -//// continue; -//// } -// } - SimpleTree simpleTree = null; - if ("EQ_DOESNT_OVERRIDE_EQUALS".equals(type)|| "HE_EQUALS_USE_HASHCODE".equals(type) || "HE_INHERITS_EQUALS_USE_HASHCODE".equals(type)|| - "SE_NO_SUITABLE_CONSTRUCTOR".equals(type) || "RI_REDUNDANT_INTERFACES".equals(type) - ||"CN_IDIOM".equals(type)||"SE_NO_SERIALVERSIONID".equals(type) || "SE_COMPARATOR_SHOULD_BE_SERIALIZABLE".equals(type)) { - ViolationSourceCodeTree parser = new ViolationSourceCodeTree(javaFile, violation.getStartLineNum(), violation.getEndLineNum()); - ITree classNameTree = parser.getClassNameTokens(); - simpleTree = new SimplifyTree().canonicalizeSourceCodeTree(classNameTree, null); - - startLine = parser.getViolationFinalStartLine(); - endLine = parser.getViolationFinalEndLine(); - } else { - ViolationSourceCodeTree alarmTree = new ViolationSourceCodeTree(javaFile, startLine, endLine); - alarmTree.extract(); - List matchedTrees = alarmTree.getViolationSourceCodeTrees(); - if (matchedTrees.size() == 0) { - System.err.println("#Null_Violation_Hunk: " + javaFile.getName() + ":" + startLine + ":" + endLine); - continue; - } - simpleTree = new SimpleTree(); - simpleTree.setLabel("Block"); - simpleTree.setNodeType("Block"); - List children = new ArrayList<>(); - - for (ITree matchedTree : matchedTrees) { - SimpleTree simpleT = new SimplifyTree().canonicalizeSourceCodeTree(matchedTree, null); - children.add(simpleT); - } - simpleTree.setChildren(children); - - startLine = alarmTree.getViolationFinalStartLine(); - endLine = alarmTree.getViolationFinalEndLine(); - } - String tokens = Tokenizer.getTokensDeepFirst(simpleTree); - String[] tokensArray = tokens.split(" "); - int length = tokensArray.length; - sizes += length + "\n"; - this.tokens += tokens + "\n"; - String sourceCode = readSourceCode(javaFile, startLine, endLine, violation.getViolationType()); - this.sourceCode += sourceCode + "\n"; - } - } - - private String readSourceCode(File javaFile, int startLine, int endLine, String violationType) { - StringBuilder sourceCode = new StringBuilder("##Source_Code:\n"); - sourceCode.append(violationType).append("\n"); - sourceCode.append(javaFile.getName().replaceAll("#", "/")).append("\nPosition: ").append(startLine).append(" : ").append(endLine).append("\n"); - FileInputStream fis = null; - Scanner scanner = null; - - try { - fis = new FileInputStream(javaFile); - scanner = new Scanner(fis); - int counter = 0; - while (scanner.hasNextLine()) { - String line = scanner.nextLine(); - counter ++; - if (startLine <= counter && counter <= endLine) { - sourceCode.append(line + "\n"); - } - if (counter == endLine) break; - } - } catch (FileNotFoundException e) { - e.printStackTrace(); - } finally { - try { - scanner.close(); - fis.close(); - } catch (IOException e) { - e.printStackTrace(); - } - } - - return sourceCode.toString(); - } - - private List readViolationInfo(String file) { - List violations = new ArrayList<>(); - - String fileContent = FileHelper.readFile(file); - BufferedReader reader = null; - reader = new BufferedReader(new StringReader(fileContent)); - String line = null; - try { - while ((line = reader.readLine()) != null) { - String[] positionStr = line.split(":"); - int startLine = Integer.parseInt(positionStr[1]); - int endLine = Integer.parseInt(positionStr[2]); - String alarmType = positionStr[0]; - - if (startLine == -1 || endLine == -1) { - log.warn("#Illegal_Line_Position: " + FileHelper.getFileName(file).replace("#", "/").replace(".txt", ".java") + ":" + startLine + ":" + endLine + ":" + alarmType); - continue; - } - - Violation violation = new Violation(startLine, endLine, alarmType); - violations.add(violation); - } - } catch (IOException e) { - e.printStackTrace(); - } finally { - try { - reader.close(); - } catch (IOException e) { - e.printStackTrace(); - } - } - return violations; - } - - private List readViolationInfo(File file) { - List violations = new ArrayList<>(); - - String fileContent = FileHelper.readFile(file); - BufferedReader reader = null; - reader = new BufferedReader(new StringReader(fileContent)); - String line = null; - try { - while ((line = reader.readLine()) != null) { - String[] positionStr = line.split(":"); - int startLine = Integer.parseInt(positionStr[1]); - int endLine = Integer.parseInt(positionStr[2]); - String alarmType = positionStr[0]; - - if (startLine == -1 || endLine == -1) { - continue; - } - - Violation violation = new Violation(startLine, endLine, alarmType); - violations.add(violation); - } - } catch (IOException e) { - e.printStackTrace(); - } finally { - try { - reader.close(); - } catch (IOException e) { - e.printStackTrace(); - } - } - return violations; - } - - public void setTypes(List violationTypes) { - this.violationTypes = violationTypes; - } - private List violationTypes = null; -} diff --git a/src/main/java/edu/lu/uni/serval/violation/code/parser/ViolationSourceCodeTree.java b/src/main/java/edu/lu/uni/serval/violation/code/parser/ViolationSourceCodeTree.java deleted file mode 100644 index d48173a..0000000 --- a/src/main/java/edu/lu/uni/serval/violation/code/parser/ViolationSourceCodeTree.java +++ /dev/null @@ -1,785 +0,0 @@ -package edu.lu.uni.serval.violation.code.parser; - -import java.io.File; -import java.util.ArrayList; -import java.util.List; - -import org.eclipse.jdt.core.dom.CompilationUnit; - -import com.github.gumtreediff.tree.ITree; - -import edu.lu.uni.serval.FixPattern.utils.Checker; -import edu.lu.uni.serval.FixPatternParser.CUCreator; -import edu.lu.uni.serval.gumtree.GumTreeGenerator; -import edu.lu.uni.serval.gumtree.GumTreeGenerator.GumTreeType; - -public class ViolationSourceCodeTree { - - private File file; - private int violationStartLine; - private int violationEndLine; - private CompilationUnit cUnit; - - private int violationFinalStartLine = 0; - private int violationFinalEndLine; - - private List matchedTrees = new ArrayList<>(); - - public ViolationSourceCodeTree(File file, int violationStartLine, int violationEndLine) { - super(); - this.file = file; - this.violationStartLine = violationStartLine; - this.violationEndLine = violationEndLine; - - CUCreator cuCreator = new CUCreator(); - this.cUnit = cuCreator.createCompilationUnit(this.file); - } - - public ViolationSourceCodeTree(String fileName, int violationStartLine, int violationEndLine) { - this(new File(fileName), violationStartLine, violationEndLine); - } - - public List getViolationSourceCodeTrees() { - return this.matchedTrees; - } - - public int getViolationFinalStartLine() { - return violationFinalStartLine; - } - - public int getViolationFinalEndLine() { - return violationFinalEndLine; - } - - /** - * extract source code of violations in method body or field body. - */ - public void extract() { - ITree rootTree = new GumTreeGenerator().generateITreeForJavaFile(file, GumTreeType.EXP_JDT); - - List trees = rootTree.getChildren(); - for (ITree tree : trees) { - int startPosition = tree.getPos(); - int startLine = cUnit.getLineNumber(startPosition); - if (startLine > violationEndLine) { - break; - } - - int endPosition = startPosition + tree.getLength(); - int endLine = cUnit.getLineNumber(endPosition - 1); - if (endLine < violationStartLine) continue; - - // FIXME the violation occurred in the Class Name - matchTrees(tree.getChildren()); - } - - int size = matchedTrees.size(); - if (size > 0) { - this.violationFinalStartLine = cUnit.getLineNumber(this.matchedTrees.get(0).getPos()); - ITree lastTree = matchedTrees.get(size - 1); - this.violationFinalEndLine = cUnit.getLineNumber(lastTree.getPos() + lastTree.getLength()); - } else { - System.err.println(this.file.getName() + " : " + this.violationStartLine + " : " + this.violationEndLine); - } - - } - - public void extract(String type) { - ITree rootTree = new GumTreeGenerator().generateITreeForJavaFile(file, GumTreeType.EXP_JDT); - - List trees = rootTree.getChildren(); - for (ITree tree : trees) { - int startPosition = tree.getPos(); - int startLine = cUnit.getLineNumber(startPosition); - if (startLine > violationEndLine) { - break; - } - - int endPosition = startPosition + tree.getLength(); - int endLine = cUnit.getLineNumber(endPosition - 1); - if (endLine < violationStartLine) continue; - /* - violationT || - violationType.equals("UC_USELESS_CONDITION") - */ - if (type.equals("SE_NO_SERIALVERSIONID")) { - - } - // FIXME the violation occurred in the Class Name - matchTrees(tree.getChildren()); - } - - int size = matchedTrees.size(); - if (size > 0) { - this.violationFinalStartLine = cUnit.getLineNumber(this.matchedTrees.get(0).getPos()); - ITree lastTree = matchedTrees.get(size - 1); - this.violationFinalEndLine = cUnit.getLineNumber(lastTree.getPos() + lastTree.getLength()); - } else { - System.err.println(type + " : " + this.file.getName() + " : " + this.violationStartLine + " : " + this.violationEndLine); - } - - } - - private void matchTrees(List trees) { - for (ITree tree : trees) { - int startPosition = tree.getPos(); - int startLine = cUnit.getLineNumber(startPosition); - if (startLine > violationEndLine) { - break; - } - - int endPosition = startPosition + tree.getLength(); - int endLine = cUnit.getLineNumber(endPosition); - if (endLine < violationStartLine) continue; - - if (endLine == violationEndLine) { - if (tree.getType() == 31) { // MethodDeclaration - matchTrees(tree.getChildren()); - } else if (isStatement(tree)) { - addToMatchedTrees(tree); - } else { - ITree parent = getParentStatement(tree); - if (parent == null) { - if (tree.getType() == 8) { // 8: Block - matchTrees(tree.getChildren()); - } - continue; - } - addToMatchedTrees(parent); - } - continue; - } - - if (startLine >= violationStartLine) { - if (isStatement(tree)) { - addToMatchedTrees(tree); - } else { - ITree parent = getParentStatement(tree); - if (parent == null) { - if (tree.getType() == 8) { - matchTrees(tree.getChildren()); - } - continue; - } - addToMatchedTrees(parent); - } - } else { -// if (tree.getType() == 14) { -// ITree parent = getParentStatement(tree); -// if (parent == null) { -// matchTrees(tree.getChildren()); -// } else { -// addToMatchedTrees(parent); -// } -// } else { -// matchTrees(tree.getChildren()); -// } - matchTrees(tree.getChildren()); - } - } - } - - private void addToMatchedTrees(ITree tree) { - if (!matchedTrees.contains(tree)) { - /* - * TODO with the same parent, or the sub trees. - * In the same method body. - */ - matchedTrees.add(tree); - } - int type = tree.getType(); - if (type == 8 || type == 12 || Checker.withBlockStatement(type)) { - int endLine = cUnit.getLineNumber(tree.getPos() + tree.getLength()); - if (endLine > violationEndLine) { - tree = removeBlock(tree); - } - } - } - - private ITree removeBlock(ITree tree) { - List oldChildren = tree.getChildren(); - List newChildren = new ArrayList<>(); - for (ITree child : oldChildren) { - int startPosition = child.getPos(); - int startLine = cUnit.getLineNumber(startPosition); - if (startLine > violationEndLine) { - break; - } - int endPosition = startPosition + child.getLength(); - int endLine = cUnit.getLineNumber(endPosition); - if (endLine > this.violationEndLine) { - int type = child.getType(); - if (type == 8 || type == 12 || Checker.withBlockStatement(type)) { // 8: Block, CatchClause - child = removeBlock(child); - if (child.getChildren().size() == 0) { - continue; - } - } - } - newChildren.add(child); - } - tree.setChildren(newChildren); - return tree; - } - - private ITree getParentStatement(ITree tree) { - ITree parent = tree; - int type = parent.getType(); - do { - parent = parent.getParent(); - if (parent == null) { - return null; - } - - type = parent.getType(); - if (type == 1 || type == 31 || type == 55 || type == 71) { - // AnonymousClassDeclaration - // MethodDeclaration Initializer (type == 28) - // TypeDeclaration - // EnumDeclaration - return null; - } - } while (!isStatement(parent)); - - return parent; - } - - private boolean isStatement(ITree tree) { - int type = tree.getType(); // 8 Block - if (type == 12) return true; // catchClause - if (type == 23) return true; // FieldDeclaration - if (Checker.isStatement(type)) return true; - return false; - } - - public void locateParentNode(String type) { - ITree rootTree = new GumTreeGenerator().generateITreeForJavaFile(file, GumTreeType.EXP_JDT); - - List trees = rootTree.getChildren(); - for (ITree tree : trees) { - int startPosition = tree.getPos(); - int startLine = cUnit.getLineNumber(startPosition); - if (startLine > violationEndLine) { - break; - } - - int endPosition = startPosition + tree.getLength(); - int endLine = cUnit.getLineNumber(endPosition - 1); - if (endLine < violationStartLine) continue; - - if (startLine == this.violationStartLine || endLine == this.violationEndLine) { - this.violationFinalStartLine = startLine; - this.violationFinalEndLine = endLine; - } - locateParentNode(tree.getChildren(), type); - } - } - - private void locateParentNode(List trees, String type) { - for (ITree tree : trees) { - int startPosition = tree.getPos(); - int startLine = cUnit.getLineNumber(startPosition); - if (startLine > violationEndLine) { - break; - } - - int endPosition = startPosition + tree.getLength(); - int endLine = cUnit.getLineNumber(endPosition); - if (endLine < violationStartLine) { - continue; - } - - if (endLine < violationEndLine) { - if ("NM_SAME_SIMPLE_NAME_AS_INTERFACE".equals(type) || "NM_SAME_SIMPLE_NAME_AS_SUPERCLASS".equals(type) || "NM_CLASS_NAMING_CONVENTION".equals(type) - || "NM_CLASS_NOT_EXCEPTION".equals(type) || "RI_REDUNDANT_INTERFACES".equals(type) - // inner class - || "SE_INNER_CLASS".equals(type) || "SE_BAD_FIELD_INNER_CLASS".equals(type) || "SIC_INNER_SHOULD_BE_STATIC_ANON".equals(type) - || "SIC_INNER_SHOULD_BE_STATIC".equals(type) || "SIC_INNER_SHOULD_BE_STATIC_NEEDS_THIS".equals(type)) { - if (tree.getType() != 55) { - ITree parent = getParentTypeDeclaration(tree); - if (parent == null) { - this.violationFinalStartLine = -1; - break; - } - tree = parent; - } - startPosition = tree.getPos(); - this.violationFinalStartLine = cUnit.getLineNumber(startPosition); - endPosition = getClassBodyStartPosition(tree); - if (endPosition == 0) { - endPosition = startPosition + tree.getLength(); - } - this.violationFinalEndLine = cUnit.getLineNumber(endPosition); - } else if ("NM_METHOD_NAMING_CONVENTION".equals(type)){ - // method name level - if (tree.getType() != 31) { - ITree parent = getParentMethodDeclaration(tree); - if (parent == null) { - this.violationFinalStartLine = -1; - break; - } - tree = parent; - } - startPosition = tree.getPos(); - this.violationFinalStartLine = cUnit.getLineNumber(startPosition); - endPosition = getMethodBodyStartPosition(tree); - if (endPosition == 0) { - endPosition = startPosition + tree.getLength(); - } - this.violationFinalEndLine = cUnit.getLineNumber(endPosition); -// } else if ("SE_NO_SUITABLE_CONSTRUCTOR".equals(type) || "CN_IDIOM".equals(type) -// || "SE_NO_SERIALVERSIONID".equals(type) || "SE_NO_SUITABLE_CONSTRUCTOR_FOR_EXTERNALIZATION".equals(type) -// || "SE_COMPARATOR_SHOULD_BE_SERIALIZABLE".equals(type)) { -// this.violationFinalStartLine = -1; - } else { - this.violationFinalStartLine = -1; - } -// FileHelper.outputToFile("logs/testV2.txt", type + " : " + this.file.getName() + " : " + this.violationStartLine + " : " + this.violationEndLine + "\n", true); - break; - } - - int astNodeType = tree.getType(); - // Class Name(super class etc.), Field, initializer, EnumDeclaration, EnumConstantDeclaration, Method Name, method body, - if (astNodeType == 31 || astNodeType == 23 || astNodeType == 28 || astNodeType == 71 || astNodeType == 72 - || astNodeType == 1 || astNodeType == 55) {// inner class - // MethodDeclaration, FieldDeclaration, Initializer, EnumDeclaration, EnumConstantDeclaration, AnonymousClassDeclaration - this.violationFinalStartLine = startLine; - this.violationFinalEndLine = endLine; - break; - } else { - locateParentNode(tree.getChildren(), type); - } - } - } - - private int getMethodBodyStartPosition(ITree tree) { - List children = tree.getChildren(); - for (int i = 0, size = children.size(); i < size; i ++) { - ITree child = children.get(i); - int type = child.getType(); - if (Checker.isStatement2(type)) { - if ( i > 0) { - child = children.get(i - 1); - return child.getPos() + child.getLength(); - } else { - return child.getPos() - 1; - } - } - } - return 0; - } - - private ITree getParentMethodDeclaration(ITree tree) { - ITree parent = tree; - int type = 0; - do { - parent = parent.getParent(); - if (parent == null) { - return null; - } - type = parent.getType(); - } while (type != 31); - return parent; - } - - private int getClassBodyStartPosition(ITree tree) { - List children = tree.getChildren(); - for (int i = 0, size = children.size(); i < size; i ++) { - ITree child = children.get(i); - int type = child.getType(); - // Modifier, NormalAnnotation, MarkerAnnotation, SingleMemberAnnotation - if (type != 83 && type != 77 && type != 78 && type != 79 - && type != 5 && type != 39 && type != 43 && type != 74 && type != 75 - && type != 76 && type != 84 && type != 87 && type != 88) { - // ArrayType, PrimitiveType, SimpleType, ParameterizedType, - // QualifiedType, WildcardType, UnionType, IntersectionType, NameQualifiedType - if (type == 42 && child.getLabel().startsWith("ClassName:")) { - continue; - } - if (i > 0) { - child = children.get(i - 1); - return child.getPos() + child.getLength() + 1; - } else { - return child.getPos() - 1; - } - } - } - return 0; - } - - private ITree getParentTypeDeclaration(ITree tree) { - ITree parent = tree; - int type = 0; - do { - parent = parent.getParent(); - if (parent == null) { - return null; - } - type = parent.getType(); - } while (type != 55); - return parent; - } - - public void locateParentNode() { - ITree rootTree = new GumTreeGenerator().generateITreeForJavaFile(file, GumTreeType.EXP_JDT); - - List trees = rootTree.getChildren(); - for (ITree tree : trees) { - int startPosition = tree.getPos(); - int startLine = cUnit.getLineNumber(startPosition); - if (startLine > violationEndLine) { - break; - } - - int endPosition = startPosition + tree.getLength(); - int endLine = cUnit.getLineNumber(endPosition - 1); - if (endLine < violationStartLine) continue; - - int type = tree.getType(); - switch (type) { - case 55: - this.classNamePosition = 1; - break; - case 71: - this.enumPosition = 1; - break; - case 72: - this.enumConsP = 1; - break; - default : - break; - } - locateParentNode(tree.getChildren()); - } - -// if (this.violationFinalStartLine == 0) { -// FileHelper.outputToFile("logs/testV1.txt", type + " : " + this.file.getName() + " : " + this.violationStartLine + " : " + this.violationEndLine + "\n", true); -// } - } - int methodPosition = 0; - int classNamePosition = 0; - int fieldPosition = 0; - int initializerP = 0; - int anonymousPosition = 0; - int enumPosition = 0; - int enumConsP = 0; - private void locateParentNode(List trees) { - boolean isBigRange = false; - for (ITree tree : trees) { - int startPosition = tree.getPos(); - int startLine = cUnit.getLineNumber(startPosition); - if (startLine > violationEndLine) { - break; - } - - int endPosition = startPosition + tree.getLength(); - int endLine = cUnit.getLineNumber(endPosition); - if (endLine < violationStartLine) { - continue; - } - - int type = tree.getType(); - if (isBigRange) { - if (type == 31 || type == 55 || type == 23 || type == 28 || type == 71 || type == 72 - || type == 81 || type == 82|| type == 1) { - this.violationFinalStartLine = -1; - break; - } - } - - - if (endLine < violationEndLine) { - if (this.violationFinalStartLine == 0) { - this.violationFinalStartLine = type; - isBigRange = true; - continue; - } - } - - // Class Name(super class etc.), Method Name, - if (type == 31) { //MethodDeclaration - this.violationFinalStartLine = type; - this.methodPosition = 1; - locateParentNode(tree.getChildren()); - break; - } else if (type == 55) {// TypeDeclaration, inner class - this.violationFinalStartLine = type; - this.classNamePosition = 1; - locateParentNode(tree.getChildren()); - break; - } else if (type == 1) {// AnonymousClassDeclaration - this.violationFinalStartLine = type; - this.anonymousPosition = 1; - locateParentNode(tree.getChildren()); - break; - } else if (type == 23) {// FieldDeclaration - this.violationFinalStartLine = type; - this.fieldPosition = 1; - locateParentNode(tree.getChildren()); - break; - } else if (type == 28) {// Initializer - this.violationFinalStartLine = type; - this.initializerP = 1; - locateParentNode(tree.getChildren()); - break; - } else if (type == 71) {// EnumDeclaration - this.violationFinalStartLine = type; - this.enumPosition = 1; - locateParentNode(tree.getChildren()); - break; - } else if (type == 72) {// EnumConstantDeclaration - this.violationFinalStartLine = tree.getType(); - this.enumConsP = 1; - locateParentNode(tree.getChildren()); - break; - } else { - locateParentNode(tree.getChildren()); - } - } - } - - /** - * extract source code of violations. - */ - public void extract2() { - ITree rootTree = new GumTreeGenerator().generateITreeForJavaFile(file, GumTreeType.EXP_JDT); - - List trees = rootTree.getChildren(); - for (ITree tree : trees) { - int startPosition = tree.getPos(); - int startLine = cUnit.getLineNumber(startPosition); - if (startLine > violationEndLine) { - break; - } - - int endPosition = startPosition + tree.getLength(); - int endLine = cUnit.getLineNumber(endPosition - 1); - if (endLine < violationStartLine) continue; - - matchTrees2(tree.getChildren()); - } - - int size = matchedTrees.size(); - if (size > 0) { - if (this.violationFinalStartLine != 0) { - this.violationFinalStartLine = cUnit.getLineNumber(this.matchedTrees.get(0).getPos()); - ITree lastTree = matchedTrees.get(size - 1); - this.violationFinalEndLine = cUnit.getLineNumber(lastTree.getPos() + lastTree.getLength()); - } - } else { - System.err.println(this.file.getName() + "===" + this.violationStartLine + ":" + this.violationEndLine); - } - - } - - private void matchTrees2(List trees) { - for (ITree tree : trees) { - int startPosition = tree.getPos(); - int startLine = cUnit.getLineNumber(startPosition); - if (startLine > violationEndLine) { - break; - } - - int endPosition = startPosition + tree.getLength(); - int endLine = cUnit.getLineNumber(endPosition); - if (endLine < violationStartLine) continue; - - if (endLine == violationEndLine) { - if (tree.getType() == 31) { // MethodDeclaration - if (startLine == violationStartLine) { - int finalEndPosition = getMethodDeclarationWithoutBody(tree); - addToMatchedTrees(tree); - this.violationFinalStartLine = cUnit.getLineNumber(tree.getPos()); - this.violationFinalEndLine = cUnit.getLineNumber(finalEndPosition); - } else { - matchTrees(tree.getChildren()); - } - } else if (isStatement(tree)) { - addToMatchedTrees(tree); - } else { - ITree parent = getParentStatement2(tree); - if (parent == null) { - if (tree.getType() == 8) { // 8: Block - matchTrees(tree.getChildren()); - } - continue; - } else if (parent.getType() == 31) { // method name - if (startLine == violationStartLine || endLine < violationEndLine) { - int finalEndPosition = getMethodDeclarationWithoutBody(parent); - addToMatchedTrees(parent); - this.violationFinalStartLine = cUnit.getLineNumber(parent.getPos()); - this.violationFinalEndLine = cUnit.getLineNumber(finalEndPosition); - } - break; - } else if (parent.getType() == 55) { // class name - if (startLine == violationStartLine || endLine < violationEndLine) { - int finalEndPosition = getClassDecalrationWithoutBody(parent); - addToMatchedTrees(parent); - this.violationFinalStartLine = cUnit.getLineNumber(parent.getPos()); - this.violationFinalEndLine = cUnit.getLineNumber(finalEndPosition); - } - break; - } - addToMatchedTrees(parent); - } - continue; - } - - if (startLine >= violationStartLine) { - if (isStatement(tree)) { - addToMatchedTrees(tree); - } else { - ITree parent = getParentStatement2(tree); - if (parent == null) { - if (tree.getType() == 8) { - matchTrees(tree.getChildren()); - } - continue; - } else if (parent.getType() == 31) { // method name - if (startLine == violationStartLine || endLine < violationEndLine) { - int finalEndPosition = getMethodDeclarationWithoutBody(parent); - addToMatchedTrees(parent); - this.violationFinalStartLine = cUnit.getLineNumber(parent.getPos()); - this.violationFinalEndLine = cUnit.getLineNumber(finalEndPosition); - } - break; - } else if (parent.getType() == 55) { // class name - if (startLine == violationStartLine || endLine < violationEndLine) { - int finalEndPosition = getClassDecalrationWithoutBody(parent); - addToMatchedTrees(parent); - this.violationFinalStartLine = cUnit.getLineNumber(parent.getPos()); - this.violationFinalEndLine = cUnit.getLineNumber(finalEndPosition); - } - break; - } - addToMatchedTrees(parent); - } - } else { - matchTrees(tree.getChildren()); - } - } - } - - private int getMethodDeclarationWithoutBody(ITree tree) { - List children = tree.getChildren(); - List newChildren = new ArrayList<>(); - for (int i = 0, size = children.size(); i < size; i ++) { - ITree child = children.get(i); - int type = child.getType(); - if (Checker.isStatement2(type)) { - if (i > 0) { - child = children.get(i - 1); - return child.getPos() + child.getLength() + 1; - } else { - return child.getPos() - 1; - } - } else { - newChildren.add(child); - } - } - tree.setChildren(newChildren); - return 0; - } - - private int getClassDecalrationWithoutBody(ITree tree) { - List children = tree.getChildren(); - List newChildren = new ArrayList<>(); - for (int i = 0, size = children.size(); i < size; i ++) { - ITree child = children.get(i); - int type = child.getType(); - // Modifier, NormalAnnotation, MarkerAnnotation, SingleMemberAnnotation - if (type != 83 && type != 77 && type != 78 && type != 79 - && type != 5 && type != 39 && type != 43 && type != 74 && type != 75 - && type != 76 && type != 84 && type != 87 && type != 88) { - // ArrayType, PrimitiveType, SimpleType, ParameterizedType, - // QualifiedType, WildcardType, UnionType, IntersectionType, NameQualifiedType - if (type == 42 && child.getLabel().startsWith("ClassName:")) { - newChildren.add(child); - continue; - } - if (i > 0) { - child = children.get(i - 1); - tree.setChildren(newChildren); - return child.getPos() + child.getLength() + 1; - } else { - tree.setChildren(newChildren); - return child.getPos() - 1; - } - } else { - newChildren.add(child); - } - } - tree.setChildren(newChildren); - return 0; - } - - private ITree getParentStatement2(ITree tree) { - ITree parent = tree; - do { - parent = parent.getParent(); - if (parent == null) { - return null; - } - - int type = parent.getType(); - if (type == 31 || type == 55) { - // MethodDeclaration - // TypeDeclaration - return parent; - } else if (type == 1 || type == 71) { - // AnonymousClassDeclaration - // EnumDeclaration - return null; - } - } while (!isStatement(parent)); - - return parent; - } - - public ITree getClassNameTokens() { - ITree classNameTree = null; - - ITree rootTree = new GumTreeGenerator().generateITreeForJavaFile(file, GumTreeType.EXP_JDT); - List trees = rootTree.getChildren(); - for (ITree tree : trees) { - int type = tree.getType(); - if (type == 55 || type == 71) { - classNameTree = tree; - ITree classNameTree2 = getClassNameTokens(tree.getChildren()); - if (classNameTree2 != null) { - classNameTree = classNameTree2; - } - } - } - - if (classNameTree != null) { - int finalEndPosition = getClassDecalrationWithoutBody(classNameTree); - int finalStartPosition = classNameTree.getPos(); - this.violationFinalStartLine = this.cUnit.getLineNumber(finalStartPosition); - this.violationFinalEndLine = this.cUnit.getLineNumber(finalEndPosition); - } - return classNameTree; - } - - private ITree getClassNameTokens(List children) { - ITree classNameTree = null; - for (ITree tree : children) { - int startPosition = tree.getPos(); - int startLine = cUnit.getLineNumber(startPosition); - if (startLine > violationStartLine) { - break; - } - - int endPosition = startPosition + tree.getLength(); - int endLine = cUnit.getLineNumber(endPosition - 1); - if (endLine < violationStartLine) continue; - - int type = tree.getType(); - if (type == 55 || type == 71) { - classNameTree = tree; - break; - } - } - return classNameTree; - } -} diff --git a/src/main/java/edu/lu/uni/serval/violation/parse/AlarmsReader.java b/src/main/java/edu/lu/uni/serval/violation/parse/AlarmsReader.java deleted file mode 100644 index bebe02e..0000000 --- a/src/main/java/edu/lu/uni/serval/violation/parse/AlarmsReader.java +++ /dev/null @@ -1,197 +0,0 @@ -package edu.lu.uni.serval.violation.parse; - -import java.io.FileInputStream; -import java.io.FileNotFoundException; -import java.io.IOException; -import java.util.ArrayList; -import java.util.HashMap; -import java.util.List; -import java.util.Map; -import java.util.Scanner; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -import edu.lu.uni.serval.violation.Alarm; -import edu.lu.uni.serval.violation.Violation; - -public class AlarmsReader { - - @SuppressWarnings("unused") - private static Logger log = LoggerFactory.getLogger(AlarmsReader.class); - - int counter = 0; - - public Map readAlarmsList(String fileName) { -// StringBuilder builder = new StringBuilder(); - Map violationsMap = new HashMap<>(); - FileInputStream fis = null; - Scanner scanner = null; - try { - fis = new FileInputStream(fileName); - scanner = new Scanner(fis); - - while (scanner.hasNextLine()) { - String line = scanner.nextLine(); - int arrowIndex = line.indexOf("=>"); - String buggyInfo = line.substring(0, arrowIndex); - String fixedInfo = line.substring(arrowIndex + 2); - String[] buggyElements = buggyInfo.split(":"); - String[] fixedElements = fixedInfo.split(":"); - -// String alarmType = buggyElements[0]; - String projectName = buggyElements[1]; - String buggyCommitId = buggyElements[2]; - String buggyFile = buggyElements[3]; -// int startLine = Integer.parseInt(buggyElements[4]); -// int endLine = Integer.parseInt(buggyElements[5]); - String fixCommitId = fixedElements[1]; - String fixedFile = fixedElements[2]; - -// if (startLine == -1 || endLine == -1 || endLine == 1) { -//// log.error("FIXED ALARM WRONG_POSITION: " + line); -// builder.append(line + "\n"); -// continue; -// } - - Alarm alarm = new Alarm(buggyCommitId, buggyFile, fixCommitId, fixedFile); -// String alarmTypeAndPosition = buggyElements[0] + ":" + startLine + ":" + endLine; - String alarmTypeAndPosition = buggyElements[0] + ":" + buggyElements[4] + ":" + buggyElements[5]; - - Violation violation; - if (violationsMap.containsKey(projectName)) { - violation = violationsMap.get(projectName); - } else { - violation = new Violation(projectName); - violationsMap.put(projectName, violation); - } - List alarms = violation.getAlarms(); - int index = alarms.indexOf(alarm); - if (index >= 0) { - Alarm tempAlarm = alarms.get(index); -// Map positions = tempAlarm.getPositions(); -// if (positions.containsKey(startLine)) { -// int end = positions.get(startLine); -// if (endLine < end) { -// positions.put(startLine, endLine); -// tempAlarm.getAlarmTypes().put(startLine, alarmType); -// } -// } else { -// positions.put(startLine, endLine); -// tempAlarm.getAlarmTypes().put(startLine, alarmType); - counter ++; -// } - tempAlarm.getAlarmTypesAndPositions().add(alarmTypeAndPosition); - } else { -// Map alarmTypes = new HashMap<>(); -// alarmTypes.put(startLine, alarmType); -// alarm.setAlarmTypes(alarmTypes); -// Map positions = new HashMap<>(); -// positions.put(startLine, endLine); -// alarm.setPositions(positions); - List alarmTypesAndPositions = new ArrayList<>(); - alarmTypesAndPositions.add(alarmTypeAndPosition); - alarm.setAlarmTypesAndPositions(alarmTypesAndPositions); - alarms.add(alarm); - counter ++; - } - } - } catch (FileNotFoundException e) { - e.printStackTrace(); - } finally { - try { - scanner.close(); - fis.close(); - } catch (IOException e) { - e.printStackTrace(); - } - } - - System.out.println(counter); -// FileHelper.outputToFile("../FPM_Violations/TuneParameters/WrongPosition/FixedAlarm.list", builder, false); - return violationsMap; - } - - public Map readAlarmsList2(String fileName) { -// StringBuilder builder = new StringBuilder(); - Map violationsMap = new HashMap<>(); - FileInputStream fis = null; - Scanner scanner = null; - try { - fis = new FileInputStream(fileName); - scanner = new Scanner(fis); - - while (scanner.hasNextLine()) { - String line = scanner.nextLine(); -// int arrowIndex = line.indexOf("=>"); -// String alarmInfo = arrowIndex > 0 ? line.substring(0, arrowIndex) : line; -// String[] buggyElements = alarmInfo.split(","); - String[] buggyElements = line.split(","); - - String projectName = buggyElements[1]; - String buggyCommitId = buggyElements[2]; - String buggyFile = buggyElements[3]; -// if (startLine == -1 || endLine == -1 || endLine == 1) { -//// log.error("UNFIXED ALARM WRONG_POSITION: " + line); -// builder.append(line + "\n"); -// continue; -// } - String alarmTypeAndPosition = buggyElements[0] + ":" + buggyElements[4] + ":" + buggyElements[5]; // Alarm type : start line : end line. - - Alarm alarm = new Alarm(buggyCommitId, buggyFile, "", ""); - - Violation violation; - if (violationsMap.containsKey(projectName)) { - violation = violationsMap.get(projectName); - } else { - violation = new Violation(projectName); - violationsMap.put(projectName, violation); - } - List alarms = violation.getAlarms(); - int index = alarms.indexOf(alarm); - if (index >= 0) { - Alarm tempAlarm = alarms.get(index); -// Map positions = tempAlarm.getPositions(); -// if (positions.containsKey(startLine)) { -// int end = positions.get(startLine); -// if (endLine < end) { -// positions.put(startLine, endLine); -// tempAlarm.getAlarmTypes().put(startLine, alarmType); -// } -// } else { -// positions.put(startLine, endLine); -// tempAlarm.getAlarmTypes().put(startLine, alarmType); - counter ++; -// } - tempAlarm.getAlarmTypesAndPositions().add(alarmTypeAndPosition); - } else { -// Map alarmTypes = new HashMap<>(); -// alarmTypes.put(startLine, alarmType); -// alarm.setAlarmTypes(alarmTypes); -// Map positions = new HashMap<>(); -// positions.put(startLine, endLine); -// alarm.setPositions(positions); - List alarmTypesAndPositions = new ArrayList<>(); - alarmTypesAndPositions.add(alarmTypeAndPosition); - alarm.setAlarmTypesAndPositions(alarmTypesAndPositions); - alarms.add(alarm); - counter ++; - } - } - } catch (FileNotFoundException e) { - e.printStackTrace(); - } finally { - try { - scanner.close(); - fis.close(); - } catch (IOException e) { - e.printStackTrace(); - } - } - - System.out.println(counter); -// FileHelper.outputToFile("../FPM_Violations/TuneParameters/WrongPosition/UnFixedAlarm.list", builder, true); - return violationsMap; - } - -} diff --git a/src/main/java/edu/lu/uni/serval/violation/parse/Test.java b/src/main/java/edu/lu/uni/serval/violation/parse/Test.java deleted file mode 100644 index 294ceb2..0000000 --- a/src/main/java/edu/lu/uni/serval/violation/parse/Test.java +++ /dev/null @@ -1,83 +0,0 @@ -package edu.lu.uni.serval.violation.parse; - -import java.io.BufferedReader; -import java.io.File; -import java.io.IOException; -import java.io.StringReader; -import java.util.List; - -import edu.lu.uni.serval.config.Configuration; -import edu.lu.uni.serval.utils.FileHelper; - -public class Test { - - public static void main(String[] args) throws IOException { -// String filePath = Configuration.GUM_TREE_INPUT + "un_positions/"; -// List files = FileHelper.getAllFiles(filePath, ".txt"); -// System.out.println(files.size()); -// List projects = new ArrayList<>(); -// int unfixedI = 0; -// for (File file : files) { -// String fileName = file.getName(); -// fileName = fileName.substring(0, fileName.indexOf("#")); -// fileName = fileName.substring(0, fileName.lastIndexOf("_")); -// fileName = fileName.substring(0, fileName.lastIndexOf("_")); -// if (!projects.contains(fileName)) { -// projects.add(fileName); -// } -// String content = FileHelper.readFile(file); -// BufferedReader reader = new BufferedReader(new StringReader(content)); -// while (reader.readLine() != null) { -// unfixedI ++; -// } -// reader.close(); -// } -// -// for (String str : projects) { -// System.out.println(str); -// } -// System.out.println("Unfixed: " + unfixedI); - - String positionFath = Configuration.GUM_TREE_INPUT + "positions/"; - List files = FileHelper.getAllFilesInCurrentDiectory(positionFath, ".txt"); - System.out.println("File Path: " + positionFath); - System.out.println(files.size()); - int i = 0; - for (File file : files) { - String content = FileHelper.readFile(file); - BufferedReader reader = new BufferedReader(new StringReader(content)); - while (reader.readLine() != null) { - i ++; - } - reader.close(); - } - - System.out.println("Fixed: " + i); - - -// String unfixedAlarmFile = "Dataset/Unfixed-Alarms/"; -// List unfixedAlarmFiles = FileHelper.getAllFilesInCurrentDiectory(unfixedAlarmFile, ".csv"); -// int a = 0; -// for (File file : unfixedAlarmFiles) { -// String content = FileHelper.readFile(file); -// BufferedReader reader = new BufferedReader(new StringReader(content)); -// while (reader.readLine() != null) { -// a ++; -// } -// reader.close(); -// } -// System.out.println("unfixed: " + a); - - String fixedAlarmFile = "Dataset/fixed-alarms-v1.0.list"; - int b = 0; - String content = FileHelper.readFile(fixedAlarmFile); - BufferedReader reader = new BufferedReader(new StringReader(content)); - while (reader.readLine() != null) { - b ++; - } - reader.close(); - System.out.println(b); - - } - -} diff --git a/src/main/java/edu/lu/uni/serval/violation/parse/TestViolationParser.java b/src/main/java/edu/lu/uni/serval/violation/parse/TestViolationParser.java deleted file mode 100644 index 42a7431..0000000 --- a/src/main/java/edu/lu/uni/serval/violation/parse/TestViolationParser.java +++ /dev/null @@ -1,94 +0,0 @@ -package edu.lu.uni.serval.violation.parse; - -import java.io.File; -import java.io.IOException; -import java.util.ArrayList; -import java.util.List; - -import edu.lu.uni.serval.config.Configuration; -import edu.lu.uni.serval.utils.FileHelper; - -public class TestViolationParser { - - private static final String REPO_PATH = "../../repos/";//"/Volumes/MacBook/repos/"; - - public static void main(String[] args) throws IOException { - List repositoriesList = new ArrayList<>(); - File repositories = new File(REPO_PATH); - File[] subFiles = repositories.listFiles(); - for (File subFile : subFiles) { - if (subFile.isDirectory()) { - File[] repos = subFile.listFiles(); - for (File repo : repos) { - if (repo.isDirectory()) { - repositoriesList.add(repo); - } - } - } - } - - List violationTypes = new ArrayList<>(); - /* - * DM_DEFAULT_ENCODING - */ - violationTypes.add("NP_NONNULL_RETURN_VIOLATION"); - violationTypes.add("NP_NULL_ON_SOME_PATH_FROM_RETURN_VALUE"); - violationTypes.add("NP_PARAMETER_MUST_BE_NONNULL_BUT_MARKED_AS_NULLABLE"); - violationTypes.add("ODR_OPEN_DATABASE_RESOURCE"); - violationTypes.add("PZLA_PREFER_ZERO_LENGTH_ARRAYS"); - violationTypes.add("RI_REDUNDANT_INTERFACES"); - violationTypes.add("RV_RETURN_VALUE_IGNORED_BAD_PRACTICE"); - violationTypes.add("RV_RETURN_VALUE_IGNORED_NO_SIDE_EFFECT"); - violationTypes.add("SE_NO_SERIALVERSIONID"); - violationTypes.add("SF_SWITCH_NO_DEFAULT"); - violationTypes.add("SIC_INNER_SHOULD_BE_STATIC"); - violationTypes.add("SQL_PREPARED_STATEMENT_GENERATED_FROM_NONCONSTANT_STRING"); - violationTypes.add("UC_USELESS_CONDITION"); - violationTypes.add("UC_USELESS_OBJECT"); - violationTypes.add("UCF_USELESS_CONTROL_FLOW"); - violationTypes.add("WMI_WRONG_MAP_ITERATOR"); - - // Violation instances of single violation type - String unfixedViolations = "../FPM_Violations/unFixedInstances/"; - String unfixedFilesPath = Configuration.GUM_TREE_INPUT + "UnfixedViolations/"; - String unfixedPositionsFilePath = Configuration.GUM_TREE_INPUT + "UnFV_positions/"; - List unfixedAlarmFiles = FileHelper.getAllFilesInCurrentDiectory(unfixedViolations, ".list"); - for (File file : unfixedAlarmFiles) { - String fileName = FileHelper.getFileNameWithoutExtension(file); -// if (!violationTypes.contains(fileName)) continue; - if (!fileName.equals("DM_DEFAULT_ENCODING")) continue; - FileHelper.createDirectory(unfixedFilesPath + fileName + "/"); - FileHelper.createDirectory(unfixedPositionsFilePath + fileName + "/"); - ViolationParser parser = new ViolationParser(); - parser.parseViolations(file, repositoriesList, unfixedFilesPath + fileName + "/", unfixedPositionsFilePath + fileName + "/"); - } - -// String unfixedAlarmFile = "Dataset/Unfixed-Alarms/"; -// final String unfixedFilesPath = Configuration.GUM_TREE_INPUT + "unfixAlarms/"; -// final String unfixedOositionsFilePath = Configuration.GUM_TREE_INPUT + "un_positions/"; -// FileHelper.createDirectory(unfixedFilesPath); -// FileHelper.createDirectory(unfixedOositionsFilePath); -// -// List unfixedAlarmFiles = FileHelper.getAllFilesInCurrentDiectory(unfixedAlarmFile, ".csv"); -// -// for (File file : unfixedAlarmFiles) { -// ViolationParser parser = new ViolationParser(); -// parser.parseViolations(file, repositoriesList, unfixedFilesPath, unfixedOositionsFilePath); -// } - -// String fixedAlarmFile = "Dataset/fixed-alarms-v1.0.list"; -// final String previousFilesPath = Configuration.GUM_TREE_INPUT + "prevFiles/"; -// final String revisedFilesPath = Configuration.GUM_TREE_INPUT + "revFiles/"; -// final String positionsFilePath = Configuration.GUM_TREE_INPUT + "positions/"; -// final String diffentryFilePath = Configuration.GUM_TREE_INPUT + "diffentries/"; -// FileHelper.createDirectory(previousFilesPath); -// FileHelper.createDirectory(revisedFilesPath); -// FileHelper.createDirectory(positionsFilePath); -// FileHelper.createDirectory(diffentryFilePath); -// -// ViolationParser parser = new ViolationParser(); -// parser.parseViolations(fixedAlarmFile, repositoriesList, previousFilesPath, revisedFilesPath, positionsFilePath, diffentryFilePath); - - } - -} diff --git a/src/main/java/edu/lu/uni/serval/violation/parse/ViolationParser.java b/src/main/java/edu/lu/uni/serval/violation/parse/ViolationParser.java deleted file mode 100644 index 481c56a..0000000 --- a/src/main/java/edu/lu/uni/serval/violation/parse/ViolationParser.java +++ /dev/null @@ -1,274 +0,0 @@ -package edu.lu.uni.serval.violation.parse; - -import java.io.File; -import java.io.IOException; -import java.util.ArrayList; -import java.util.HashMap; -import java.util.List; -import java.util.Map; - -import org.eclipse.jgit.errors.RevisionSyntaxException; - -import edu.lu.uni.serval.config.Configuration; -import edu.lu.uni.serval.git.exception.GitRepositoryNotFoundException; -import edu.lu.uni.serval.git.exception.NotValidGitRepositoryException; -import edu.lu.uni.serval.git.travel.GitRepository; -import edu.lu.uni.serval.utils.Exporter; -import edu.lu.uni.serval.utils.FileHelper; -import edu.lu.uni.serval.utils.MapSorter; -import edu.lu.uni.serval.violation.Alarm; -import edu.lu.uni.serval.violation.Violation; - -/** - * - * @author kui.liu - * - */ -public class ViolationParser { - - Map alarmTypesCounter = new HashMap<>(); - - /** - * Travel Git repositories to get the violation-localized java files, violation-removed java files, and violation types and positions. - * - * @param fixedAlarmFile - * @param repos - * @param previousFilesPath - * @param revisedFilesPath - * @param positionsFilePath - * @param diffentryFilePath - */ - public void parseViolations(String fixedAlarmFile, List repos, String previousFilesPath, String revisedFilesPath, String positionsFilePath, String diffentryFilePath) { - AlarmsReader reader = new AlarmsReader(); - Map violations = reader.readAlarmsList(fixedAlarmFile); - List throwExpProjs = new ArrayList<>(); - int a = 0; - int exceptionsCounter = 0; - int violationsAmount = 0; -// System.out.println(violations.size()); - for (Map.Entry entry : violations.entrySet()) { - String projectName = entry.getKey(); - String repoName = ""; - for (File repo : repos) { - if (repo.getName().equals(projectName)) { - repoName = repo.getPath() + "/"; - break; - } - } - if ("".equals(repoName)) { - a ++; - System.out.println(projectName); - continue; - } - Violation violation = entry.getValue(); - List alarms = violation.getAlarms(); - - String repoPath = repoName + "/.git"; - GitRepository gitRepo = new GitRepository(repoPath, revisedFilesPath, previousFilesPath); - try { - gitRepo.open(); - for (Alarm alarm : alarms) { - String buggyCommitId = alarm.getBuggyCommitId(); - String buggyFileName = alarm.getBuggyFileName(); - String buggyFileContent = gitRepo.getFileContentByCommitIdAndFileName(buggyCommitId, buggyFileName); - if (buggyFileContent == null || "".equals(buggyFileContent)) { -// System.out.println(projectName); - throwExpProjs.add(projectName); - exceptionsCounter ++; - continue; - } - - String fixedCommitId = alarm.getFixedCommitId(); - String fixedFileName = alarm.getFixedFileName(); - String fixedFileContent = gitRepo.getFileContentByCommitIdAndFileName(fixedCommitId, fixedFileName); - if (fixedFileContent == null || "".equals(fixedFileContent)) { -// System.out.println(projectName); - throwExpProjs.add(projectName); - exceptionsCounter ++; - continue; - } - - String diffentry = gitRepo.getDiffentryByTwoCommitIds(buggyCommitId, fixedCommitId, fixedFileName); - if (diffentry == null) { -// System.out.println(projectName); - throwExpProjs.add(projectName); - exceptionsCounter ++; - continue; - } - - String commitId = buggyCommitId.substring(0, 6) + "_" + fixedCommitId.substring(0, 6); - String fileName = fixedFileName.replaceAll("/", "#"); - fileName = projectName + "_" + commitId + fileName; - if (fileName.length() > 240) { - List files = FileHelper.getAllFilesInCurrentDiectory(revisedFilesPath, ".java"); - fileName = files.size() + "TooLongFileName.java"; - } - String buggyFile = previousFilesPath + "prev_" + fileName; - String fixedFile = revisedFilesPath + fileName; - fileName = fileName.replace(".java", ".txt"); - String positionFile = positionsFilePath + fileName; - String diffentryFile = diffentryFilePath + fileName; - FileHelper.outputToFile(buggyFile, buggyFileContent, false); - FileHelper.outputToFile(fixedFile, fixedFileContent, false); -// FileHelper.outputToFile(positionFile, readPosition(alarm.getPositions(), alarm.getAlarmTypes()), false); - FileHelper.outputToFile(positionFile, readAlarmTypeAndPosition(alarm.getAlarmTypesAndPositions()), false); - FileHelper.outputToFile(diffentryFile, diffentry, false); - - violationsAmount += counter(alarm); - } - } catch (GitRepositoryNotFoundException e) { - System.out.println("Exception: " + projectName); - exceptionsCounter ++; - e.printStackTrace(); - } catch (NotValidGitRepositoryException e) { - System.out.println("Exception: " + projectName); - exceptionsCounter ++; - e.printStackTrace(); - } catch (IOException e) { - System.out.println("Exception: " + projectName); - exceptionsCounter ++; - e.printStackTrace(); - } catch (RevisionSyntaxException e) { - System.out.println("Exception: " + projectName); - exceptionsCounter ++; - e.printStackTrace(); - } finally { - gitRepo.close(); - } - } - System.out.println(a); - System.out.println(exceptionsCounter); - System.out.println(throwExpProjs.size()); - System.out.println(throwExpProjs); - - System.out.println("### Violations amount: " + violationsAmount); - - MapSorter sorter = new MapSorter(); - alarmTypesCounter = sorter.sortByKeyAscending(alarmTypesCounter); - String[] columns = { "Alarm Type", "amount" }; - Exporter.exportOutliers(alarmTypesCounter, new File(Configuration.GUM_TREE_INPUT + "FixedAlarmTypes.xls"), 1, columns); - } - - private int counter(Alarm alarm) { - int counter = 0; -// Map alarmTypes = alarm.getAlarmTypes(); -// counter += alarmTypes.size(); -// for (Map.Entry entry : alarmTypes.entrySet()) { -// String type = entry.getValue(); -// if (this.alarmTypesCounter.containsKey(entry.getValue())) { -// this.alarmTypesCounter.put(type, this.alarmTypesCounter.get(type) + 1); -// } else { -// this.alarmTypesCounter.put(type, 1); -// } -// } - - List alarmTypesAndPositions = alarm.getAlarmTypesAndPositions(); - for (String alarmTypeAndPosition : alarmTypesAndPositions) { - String[] elements = alarmTypeAndPosition.split(":"); - String alarmType = elements[0]; - if (this.alarmTypesCounter.containsKey(alarmType)) { - this.alarmTypesCounter.put(alarmType, this.alarmTypesCounter.get(alarmType) + 1); - } else { - this.alarmTypesCounter.put(alarmType, 1); - } - } - counter += alarmTypesAndPositions.size(); - return counter; - } - - /** - * Output data in terms of alarm types. - * - * @param alarmsInfo - * @param repos - * @param previousFilesPath - * @param revisedFilesPath - * @param positionsFilePath - * @param diffentryFilePath - */ - public void parseViolations(File alarmsInfo, List repos, String violationFilesPath, String positionsFilePath) { - AlarmsReader reader = new AlarmsReader(); - Map violations = reader.readAlarmsList2(alarmsInfo.getPath()); - int a = 0; - for (Map.Entry entry : violations.entrySet()) { - String projectName = entry.getKey(); - String repoName = ""; - for (File repo : repos) { - if (repo.getName().equals(projectName)) { - repoName = repo.getPath() + "/"; - break; - } - } - if ("".equals(repoName)) { - a ++; - System.out.println(projectName); - continue; - } - Violation violation = entry.getValue(); - List alarms = violation.getAlarms(); - - String repoPath = repoName + "/.git"; - GitRepository gitRepo = new GitRepository(repoPath, "", ""); - try { - gitRepo.open(); - for (Alarm alarm : alarms) { - String buggyCommitId = alarm.getBuggyCommitId(); - String buggyFileName = alarm.getBuggyFileName(); - String buggyFileContent = gitRepo.getFileContentByCommitIdAndFileName(buggyCommitId, buggyFileName); - if (buggyFileContent == null || "".equals(buggyFileContent)) { - System.out.println(projectName); - continue; - } - - String commitId = buggyCommitId.substring(0, 6) + "_"; - String fileName = buggyFileName.replaceAll("/", "#"); - fileName = projectName + "_" + commitId + fileName; - if (fileName.length() > 240) { - List files = FileHelper.getAllFilesInCurrentDiectory(violationFilesPath, ".java"); - fileName = files.size() + "TooLongFileName.java"; - } - String buggyFile = violationFilesPath + "unfixed_" + fileName; - fileName = fileName.replace(".java", ".txt"); - String positionFile = positionsFilePath + fileName; - FileHelper.outputToFile(buggyFile, buggyFileContent, false); - FileHelper.outputToFile(positionFile, readAlarmTypeAndPosition(alarm.getAlarmTypesAndPositions()), false); - } - } catch (GitRepositoryNotFoundException e) { - System.out.println("Exception: " + projectName); - e.printStackTrace(); - } catch (NotValidGitRepositoryException e) { - System.out.println("Exception: " + projectName); - e.printStackTrace(); - } catch (IOException e) { - System.out.println("Exception: " + projectName); - e.printStackTrace(); - } catch (RevisionSyntaxException e) { - System.out.println("Exception: " + projectName); - e.printStackTrace(); - } finally { - gitRepo.close(); - } - } - System.out.println(a); - } - - private String readAlarmTypeAndPosition(List alarmTypesAndPositions) { - String positionsStr = ""; - for (String element : alarmTypesAndPositions) { - positionsStr += element + "\n"; - } - return positionsStr; - } - - @SuppressWarnings("unused") - @Deprecated - private String readAlarmTypeAndPosition(Map positions, Map alarmTypes) { - String positionsStr = ""; - for (Map.Entry entry : alarmTypes.entrySet()) { - int key = entry.getKey(); - positionsStr += key + ":" + positions.get(key) + ":" + entry.getValue() + "\n"; - } - return positionsStr; - } - -}